Query psy12863
Match_columns 150
No_of_seqs 65 out of 67
Neff 3.4
Searched_HMMs 13730
Date Fri Aug 16 21:42:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12863.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/12863hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wmda1 b.18.1.20 (A:319-434) 60.9 7.5 0.00054 26.5 5.2 42 99-140 9-56 (116)
2 d1wp0a1 c.47.1.10 (A:138-297) 29.7 14 0.001 23.5 2.2 20 116-135 122-141 (160)
3 d1b4ra_ b.1.3.1 (A:) Polycyste 29.5 60 0.0044 20.2 5.6 37 104-140 44-80 (80)
4 d1a8ya3 c.47.1.3 (A:229-347) C 28.4 5.8 0.00042 28.3 0.0 17 114-130 49-65 (119)
5 d1v8ha1 b.1.18.19 (A:2-107) Su 25.4 51 0.0037 21.8 4.6 31 100-130 67-97 (106)
6 d1v8ba2 c.23.12.3 (A:4-234,A:3 15.5 34 0.0025 27.2 2.1 38 33-71 66-103 (313)
7 d2b7ka1 c.47.1.10 (A:111-279) 14.1 33 0.0024 21.2 1.4 21 115-135 127-147 (169)
8 d2j5ha1 g.3.11.7 (A:1-39) Crip 13.9 35 0.0026 19.7 1.3 24 22-49 11-36 (39)
9 d1g0da1 b.1.18.9 (A:6-140) Tra 13.1 1.9E+02 0.014 19.4 6.1 26 118-143 87-112 (135)
10 d1lm8v_ b.3.3.1 (V:) VHL {Huma 12.4 1.3E+02 0.0097 21.1 4.5 36 99-134 5-40 (150)
No 1
>d1wmda1 b.18.1.20 (A:319-434) Alkaline serine protease kp-43, C-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]}
Probab=60.95 E-value=7.5 Score=26.53 Aligned_cols=42 Identities=10% Similarity=0.136 Sum_probs=27.7
Q ss_pred CCCCCcceEEEEeccccceEEEEEEECCCC------ceeeeeEEEeec
Q psy12863 99 IGPYSEPVLIHEWLTLVTHNITYLWIDPTN------VLAAVTRVQVDE 140 (150)
Q Consensus 99 lgp~~ep~~~~~w~~~~~~~vtv~widP~~------~ia~~~~~~ie~ 140 (150)
|++...-...+.-..+..+.||+.|-||.+ .|+.-.|+.|++
T Consensus 9 l~~g~~~ty~~~v~~~~~l~vtL~W~D~p~s~~a~~~LvnDLDL~V~~ 56 (116)
T d1wmda1 9 LSTSQKATYSFTATAGKPLKISLVWSDAPASTTASVTLVNDLDLVITA 56 (116)
T ss_dssp ECTTCEEEEEEEECTTSCEEEEEECCCCCCCTTCSCCCCSEEEEEEEC
T ss_pred CCCCCeEEEEEEeCCCCCEEEEEEeeCCCCCCCcchheeeeeeEEEEc
Confidence 334444444444446678999999999986 455557777765
No 2
>d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.67 E-value=14 Score=23.49 Aligned_cols=20 Identities=20% Similarity=0.258 Sum_probs=16.6
Q ss_pred ceEEEEEEECCCCceeeeeE
Q psy12863 116 THNITYLWIDPTNVLAAVTR 135 (150)
Q Consensus 116 ~~~vtv~widP~~~ia~~~~ 135 (150)
+|+.++.-|||.|+|++.|.
T Consensus 122 ~H~~~~~LId~~G~i~~~~~ 141 (160)
T d1wp0a1 122 DHTIIMYLIGPDGEFLDYFG 141 (160)
T ss_dssp EECCEEEEECTTSCEEEEEE
T ss_pred eccceEEEECCCCcEEEEEC
Confidence 45667888999999999874
No 3
>d1b4ra_ b.1.3.1 (A:) Polycystein-1, PKD-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.53 E-value=60 Score=20.18 Aligned_cols=37 Identities=19% Similarity=0.126 Sum_probs=32.7
Q ss_pred cceEEEEeccccceEEEEEEECCCCceeeeeEEEeec
Q psy12863 104 EPVLIHEWLTLVTHNITYLWIDPTNVLAAVTRVQVDE 140 (150)
Q Consensus 104 ep~~~~~w~~~~~~~vtv~widP~~~ia~~~~~~ie~ 140 (150)
.|...+.+...-.++|++.=-|+.|......+|.||.
T Consensus 44 ~~~~~HtY~~~G~Y~Vtltvt~~~g~~~~~~~V~V~a 80 (80)
T d1b4ra_ 44 GPAASHRYVLPGRYHVTAVLALGAGSALLGTDVQVEA 80 (80)
T ss_dssp TTEEEEEECSSEEEEEEEEEECSSCEEEEEEEEEEBC
T ss_pred CCCEEEEEeCCCEEEEEEEEEcCCCeEEEEEEEEEEC
Confidence 5667889988889999999999999999999999873
No 4
>d1a8ya3 c.47.1.3 (A:229-347) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=28.39 E-value=5.8 Score=28.25 Aligned_cols=17 Identities=24% Similarity=0.673 Sum_probs=13.7
Q ss_pred ccceEEEEEEECCCCce
Q psy12863 114 LVTHNITYLWIDPTNVL 130 (150)
Q Consensus 114 ~~~~~vtv~widP~~~i 130 (150)
+.+.+++++||||....
T Consensus 49 t~n~~LsivWIDPD~FP 65 (119)
T d1a8ya3 49 TDNPDLSIIWIDPDDFP 65 (119)
T ss_dssp TTCSSCCEEEECGGGCT
T ss_pred CcCCCceEEEECCcccc
Confidence 36667999999998764
No 5
>d1v8ha1 b.1.18.19 (A:2-107) Sulfur oxidation protein SoxZ {Thermus thermophilus [TaxId: 274]}
Probab=25.36 E-value=51 Score=21.81 Aligned_cols=31 Identities=10% Similarity=0.072 Sum_probs=25.3
Q ss_pred CCCCcceEEEEeccccceEEEEEEECCCCce
Q psy12863 100 GPYSEPVLIHEWLTLVTHNITYLWIDPTNVL 130 (150)
Q Consensus 100 gp~~ep~~~~~w~~~~~~~vtv~widP~~~i 130 (150)
|-...|.+.+.+.....-++++.|+|=.|..
T Consensus 67 svS~NP~~~F~~~~~~~g~l~v~~~Dn~G~~ 97 (106)
T d1v8ha1 67 STSANPLYAFKFKAEKAGTFTIKLKDTDGDT 97 (106)
T ss_dssp SCCSSCEEEEEEECCSCEEEEEEEEETTSCE
T ss_pred cccCCCeEEEEEccCCCceEEEEEEECCCCE
Confidence 4456899999998666668999999988864
No 6
>d1v8ba2 c.23.12.3 (A:4-234,A:398-479) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}
Probab=15.46 E-value=34 Score=27.16 Aligned_cols=38 Identities=18% Similarity=0.318 Sum_probs=24.2
Q ss_pred cceeeeccCCCCCCCCcchHHHHHhhcCCceeEEeccCc
Q psy12863 33 YRHVVDWCGCSPNDFRSSDYSRLVATKGKQLYFARKFEP 71 (150)
Q Consensus 33 yk~iVDWcGCSP~~fr~~D~~rl~~~~~~~~fFARKFe~ 71 (150)
.+..|-||||-|..--.+=...|.+. ..-.-||.|=+.
T Consensus 66 ~GAeV~~~scNp~STQD~vAAAl~~~-~gi~VfAwkGet 103 (313)
T d1v8ba2 66 LGAQIRWCSCNIYSTADYAAAAVSTL-ENVTVFAWKNET 103 (313)
T ss_dssp TTCEEEEECSSSSCCCHHHHHHHTTS-TTEEEECCTTCC
T ss_pred hCCeeEEeccCCcccchHHHHHhhcc-CCceEEEecCCC
Confidence 46789999998765444334445432 256788888543
No 7
>d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=14.10 E-value=33 Score=21.22 Aligned_cols=21 Identities=24% Similarity=0.472 Sum_probs=16.8
Q ss_pred cceEEEEEEECCCCceeeeeE
Q psy12863 115 VTHNITYLWIDPTNVLAAVTR 135 (150)
Q Consensus 115 ~~~~vtv~widP~~~ia~~~~ 135 (150)
..|+-++.-|||.|+|++.|.
T Consensus 127 i~h~~~~fLID~~G~vv~~~~ 147 (169)
T d2b7ka1 127 VDHSIFFYLMDPEGQFVDALG 147 (169)
T ss_dssp TTTCCCEEEECTTSCEEEEEC
T ss_pred eeccceEEEECCCCeEEEEEC
Confidence 455666788999999999875
No 8
>d2j5ha1 g.3.11.7 (A:1-39) Cripto growth factor {Mouse (Mus musculus) [TaxId: 10090]}
Probab=13.94 E-value=35 Score=19.73 Aligned_cols=24 Identities=29% Similarity=0.804 Sum_probs=16.5
Q ss_pred ec--cCCCCCccccceeeeccCCCCCCCCc
Q psy12863 22 NW--KRSLGCKCQYRHVVDWCGCSPNDFRS 49 (150)
Q Consensus 22 nW--~Rk~GC~Cqyk~iVDWcGCSP~~fr~ 49 (150)
.| |+=--|||.|+.+- |.|.+|-+
T Consensus 11 ~w~~k~CslCrC~~G~lh----Cfpq~fl~ 36 (39)
T d2j5ha1 11 TWLPKKCSLCRCWHGQLH----CLPQTFLP 36 (39)
T ss_dssp TCSSCCCCCCCCCSSSCC----SCCSSSST
T ss_pred ceecccceEEEeccCcee----eccccccC
Confidence 46 33345899888774 88888754
No 9
>d1g0da1 b.1.18.9 (A:6-140) Transglutaminase N-terminal domain {Red sea bream (Chrysophrys major) [TaxId: 143350]}
Probab=13.08 E-value=1.9e+02 Score=19.37 Aligned_cols=26 Identities=19% Similarity=0.166 Sum_probs=22.0
Q ss_pred EEEEEEECCCCceeeeeEEEeeccCc
Q psy12863 118 NITYLWIDPTNVLAAVTRVQVDENTT 143 (150)
Q Consensus 118 ~vtv~widP~~~ia~~~~~~ie~~~~ 143 (150)
+++|.--=|.+-++..|.+.|+....
T Consensus 87 ~v~vsV~spa~A~VG~y~L~v~~~~~ 112 (135)
T d1g0da1 87 EILLTLHSPANAVIGHYRLAVLVMSP 112 (135)
T ss_dssp EEEEEEECCTTCCCEEEEEEEEEECT
T ss_pred EEEEEEeCCCCCeEEEEEEEEEEEec
Confidence 57777789999999999999986543
No 10
>d1lm8v_ b.3.3.1 (V:) VHL {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.36 E-value=1.3e+02 Score=21.06 Aligned_cols=36 Identities=6% Similarity=-0.039 Sum_probs=25.9
Q ss_pred CCCCCcceEEEEeccccceEEEEEEECCCCceeeee
Q psy12863 99 IGPYSEPVLIHEWLTLVTHNITYLWIDPTNVLAAVT 134 (150)
Q Consensus 99 lgp~~ep~~~~~w~~~~~~~vtv~widP~~~ia~~~ 134 (150)
=|..+..-....|.......|.+.|||-.|......
T Consensus 5 RS~~S~~p~~V~FvN~s~~~v~l~WId~~G~~~~Y~ 40 (150)
T d1lm8v_ 5 RSVNSREPSQVIFCNRSPRVVLPVWLNFDGEPQPYP 40 (150)
T ss_dssp CCCCCCCEEEEEEEECSSSCEEEEEECTTSCEEECC
T ss_pred ccCCCCCCEEEEEEcCCCCEEEEEEECCCCCEEEee
Confidence 344553335566888889999999999999876543
Done!