RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy12863
         (150 letters)



>2gak_A Beta-1,6-N-acetylglucosaminyltransferase; glycoprotein,
           CIS-peptide, dimer; HET: NAG; 2.00A {Mus musculus} PDB:
           2gam_A* 3otk_A*
          Length = 391

 Score = 41.0 bits (95), Expect = 6e-05
 Identities = 13/84 (15%), Positives = 22/84 (26%), Gaps = 16/84 (19%)

Query: 2   YVLRNSVHCFSYIDNNLHITNWKRSLG--------CKCQYRHVVDWCGCSPNDFRSSDYS 53
               ++ +  S ++       W+   G          C   HV   C     D       
Sbjct: 298 SFPSSNKYDLSDMNAIARFVKWQYFEGDVSNGAPYPPCSGVHVRSVCVFGAGDLS----- 352

Query: 54  RLVATKGKQLYFARKFEPVVNQDI 77
                  +   FA KF+  V+   
Sbjct: 353 ---WMLRQHHLFANKFDMDVDPFA 373


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 39.3 bits (91), Expect = 2e-04
 Identities = 32/146 (21%), Positives = 52/146 (35%), Gaps = 32/146 (21%)

Query: 1   RYVLRNSVHCF-SYIDNNLHITNWKRSLGCKCQY--RHVVDWCGCSPND-------FRS- 49
            Y+  N +H   + +      T  K     K     R +       P D       FR+ 
Sbjct: 94  CYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAK----RPFDKKSNSALFRAV 149

Query: 50  -SDYSRLVATKGKQ----LYFA--RK----FEPVVNQDIHLEVSSSYDQKEQMSRDFLHA 98
               ++LVA  G Q     YF   R     +  +V  D+   +  S +   ++ R  L A
Sbjct: 150 GEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLV-GDL---IKFSAETLSELIRTTLDA 205

Query: 99  IGPYSEPVLIHEWLT--LVTHNITYL 122
              +++ + I EWL     T +  YL
Sbjct: 206 EKVFTQGLNILEWLENPSNTPDKDYL 231



 Score = 26.6 bits (58), Expect = 4.9
 Identities = 7/40 (17%), Positives = 22/40 (55%), Gaps = 3/40 (7%)

Query: 112 LTLVTH-NITYLWIDPTNVLAAVTRVQVDENTTSITQSSQ 150
           LTL +H ++ ++ + PT      +++Q ++    + + ++
Sbjct: 9   LTL-SHGSLEHVLLVPTASFFIASQLQ-EQFNKILPEPTE 46


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 28.0 bits (61), Expect = 0.86
 Identities = 6/25 (24%), Positives = 11/25 (44%), Gaps = 6/25 (24%)

Query: 87  QKEQM----SRDFLHAIGPYSEPVL 107
           +K+ +    +   L+A    S P L
Sbjct: 18  EKQALKKLQASLKLYA--DDSAPAL 40


>1z6o_A Ferritin light chain; metal binding protein, iron storage; 1.91A
          {Trichoplusia NI} SCOP: a.25.1.1
          Length = 212

 Score = 28.1 bits (62), Expect = 1.1
 Identities = 10/53 (18%), Positives = 15/53 (28%), Gaps = 4/53 (7%)

Query: 33 YRHVVDWCGCSPNDFRSSDYSRLVATKGKQLYFARKFEPVVNQDIHLEVSSSY 85
          Y  V   CG + N       +   A  G+           +     L +  SY
Sbjct: 5  YNDVALDCGITSNSLALPRCN---AVYGEYGS-HGNVATELQAYAKLHLERSY 53


>1x5i_A Neogenin; RGM binding, fibronectin type III domain, structural
           genomics, NPPSFA, national project on protein structural
           and functional analyses; NMR {Homo sapiens} SCOP:
           b.1.2.1
          Length = 126

 Score = 26.3 bits (58), Expect = 2.9
 Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 9/49 (18%)

Query: 100 GPYSEPVLIHEWLTLVTHNITYLWIDPTNVLAAVTRVQVDENTTSITQS 148
           GP ++ +      T  +       +D T V    + + V    TSI  S
Sbjct: 7   GPATDWLSAE---TFESD------LDETRVPEVPSSLHVRPLVTSIVVS 46


>3hlc_A Transesterase, LOVD; alpha/beta hydrolase fold, transferase; HET:
           PG4; 2.00A {Aspergillus terreus} PDB: 3hld_A* 3hlf_A*
           3hle_A* 3hlg_A* 3hlb_A 3hl9_A
          Length = 432

 Score = 26.7 bits (59), Expect = 3.5
 Identities = 5/19 (26%), Positives = 7/19 (36%)

Query: 120 TYLWIDPTNVLAAVTRVQV 138
               IDP   L  +   Q+
Sbjct: 388 IVWQIDPKAGLCTLAFFQL 406


>1ci9_A ESTB, protein (carboxylesterase); hydrolase, caboxylesterase; HET:
           DFP; 1.80A {Burkholderia gladioli} SCOP: e.3.1.1 PDB:
           1ci8_A*
          Length = 392

 Score = 26.2 bits (58), Expect = 4.8
 Identities = 2/14 (14%), Positives = 6/14 (42%)

Query: 120 TYLWIDPTNVLAAV 133
              ++D    L+ +
Sbjct: 354 HSWFVDRALGLSVL 367


>3fky_A Glutamine synthetase; beta-grAsp, catalytic domain, acetylation,
           cytoplasm, ligase, UBL conjugation; HET: FLC; 2.95A
           {Saccharomyces cerevisiae}
          Length = 370

 Score = 25.4 bits (56), Expect = 8.0
 Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 1/27 (3%)

Query: 119 ITYLWIDPTNVLAAVTRVQVDENTTSI 145
             Y+WID T  L +  R  + +  TSI
Sbjct: 26  AEYVWIDGTGNLRSKGRT-LKKRITSI 51


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.321    0.133    0.424 

Gapped
Lambda     K      H
   0.267   0.0715    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,236,737
Number of extensions: 116614
Number of successful extensions: 238
Number of sequences better than 10.0: 1
Number of HSP's gapped: 235
Number of HSP's successfully gapped: 11
Length of query: 150
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 65
Effective length of database: 4,328,508
Effective search space: 281353020
Effective search space used: 281353020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.2 bits)