BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12864
(147 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1U3O|A Chain A, Solution Structure Of Rat Kalirin N-Terminal Sh3 Domain
Length = 82
Score = 53.1 bits (126), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 39/67 (58%)
Query: 34 PDWALGSGIEMTWVLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEG 93
P L G E+T VL D++A +++ELS+ GQ VE++ S P W LVR + EG
Sbjct: 9 PGSTLSGGCELTVVLQDFSAAHSSELSIQVGQTVELLERPSERPGWCLVRTTERSPPQEG 68
Query: 94 LVPTCVL 100
LVP+ L
Sbjct: 69 LVPSSTL 75
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 1 MTWVLADYTAANTTELSVHKGQQVEVVHNSSAPPDWAL 38
+T VL D++AA+++ELS+ GQ VE++ S P W L
Sbjct: 19 LTVVLQDFSAAHSSELSIQVGQTVELLERPSERPGWCL 56
>pdb|4AFZ|C Chain C, Human Chymase - Fynomer Complex
pdb|4AFZ|D Chain D, Human Chymase - Fynomer Complex
pdb|4AG1|C Chain C, Human Chymase - Fynomer Complex
Length = 84
Score = 39.3 bits (90), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 6/60 (10%)
Query: 39 GSGIEMTWVLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVR-LSLGEECSEGLVPT 97
GSG+ + L DY AT T+LS HKG++ +++ P DW R L+ GE G +P+
Sbjct: 3 GSGVTLFVALYDYNATRWTDLSFHKGEKFQILE--FGPGDWWEARSLTTGE---TGYIPS 57
Score = 31.2 bits (69), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 5 LADYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
L DY A T+LS HKG++ +++ P DW
Sbjct: 12 LYDYNATRWTDLSFHKGEKFQILE--FGPGDW 41
>pdb|4AFQ|C Chain C, Human Chymase - Fynomer Complex
pdb|4AFQ|D Chain D, Human Chymase - Fynomer Complex
pdb|4AFS|C Chain C, Human Chymase - Fynomer Complex
pdb|4AFU|C Chain C, Human Chymase - Fynomer Complex
pdb|4AFU|D Chain D, Human Chymase - Fynomer Complex
Length = 85
Score = 39.3 bits (90), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 5/60 (8%)
Query: 39 GSGIEMTWVLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVR-LSLGEECSEGLVPT 97
GSG+ + L DY A T+LS HKG++ +++ ++S P DW R L+ GE G +P+
Sbjct: 3 GSGVTLFVALYDYQADRWTDLSFHKGEKFQIL-DASPPGDWWEARSLTTGE---TGYIPS 58
Score = 32.3 bits (72), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 5 LADYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
L DY A T+LS HKG++ +++ ++S P DW
Sbjct: 12 LYDYQADRWTDLSFHKGEKFQIL-DASPPGDW 42
>pdb|4AG2|C Chain C, Human Chymase - Fynomer Complex
pdb|4AG2|D Chain D, Human Chymase - Fynomer Complex
Length = 84
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 6/60 (10%)
Query: 39 GSGIEMTWVLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVR-LSLGEECSEGLVPT 97
GSG+ + L DY AT T+LS HKG++ +++ S DW R L+ GE G +P+
Sbjct: 3 GSGVTLFVALYDYNATRWTDLSFHKGEKFQILDGDSG--DWWEARSLTTGE---TGYIPS 57
Score = 30.4 bits (67), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 5 LADYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
L DY A T+LS HKG++ +++ S DW
Sbjct: 12 LYDYNATRWTDLSFHKGEKFQILDGDSG--DW 41
>pdb|3UA6|A Chain A, Crystal Structure Of The Human Fyn Sh3 Domain
pdb|3UA6|B Chain B, Crystal Structure Of The Human Fyn Sh3 Domain
pdb|3UA7|A Chain A, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
pdb|3UA7|B Chain B, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
pdb|3UA7|C Chain C, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
pdb|3UA7|D Chain D, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
Length = 64
Score = 35.8 bits (81), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 38 LGSGIEMTWVLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPT 97
+G+G+ + L DY A +LS HKG++ +++ NSS W L+ GE G +P+
Sbjct: 1 MGTGVTLFVALYDYEARTEDDLSFHKGEKFQIL-NSSEGDWWEARSLTTGE---TGYIPS 56
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 5 LADYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
L DY A +LS HKG++ +++++S DW
Sbjct: 11 LYDYEARTEDDLSFHKGEKFQILNSSEG--DW 40
>pdb|3UF4|A Chain A, Crystal Structure Of A Sh3 And Sh2 Domains Of Fyn
Protein (Proto- Concogene Tyrosine-Protein Kinase Fyn)
From Mus Musculus At 1.98 A Resolution
Length = 164
Score = 35.8 bits (81), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 39 GSGIEMTWVLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPT 97
G+G+ + L DY A +LS HKG++ +++ NSS W L+ GE G +P+
Sbjct: 1 GTGVTLFVALYDYEARTEDDLSFHKGEKFQIL-NSSEGDWWEARSLTTGE---TGYIPS 55
Score = 28.9 bits (63), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 4 VLADYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
L DY A +LS HKG++ +++++S DW
Sbjct: 9 ALYDYEARTEDDLSFHKGEKFQILNSSEG--DW 39
>pdb|1FYN|A Chain A, Phosphotransferase
Length = 62
Score = 34.7 bits (78), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 39 GSGIEMTWVLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPT 97
G+G+ + L DY A +LS HKG++ +++ NSS W L+ GE G +P+
Sbjct: 1 GTGVTLFVALYDYEARTEDDLSFHKGEKFQIL-NSSEGDWWEARSLTTGE---TGYIPS 55
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 5 LADYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
L DY A +LS HKG++ +++++S DW
Sbjct: 10 LYDYEARTEDDLSFHKGEKFQILNSSEG--DW 39
>pdb|3H0H|A Chain A, Human Fyn Sh3 Domain R96i Mutant, Crystal Form I
pdb|3H0I|A Chain A, Human Fyn Sh3 Domain R96i Mutant, Crystal Form Ii
pdb|3H0I|B Chain B, Human Fyn Sh3 Domain R96i Mutant, Crystal Form Ii
Length = 73
Score = 34.7 bits (78), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 39 GSGIEMTWVLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPT 97
G+G+ + L DY A +LS HKG++ +++ NSS W L+ GE G +P+
Sbjct: 12 GTGVTLFVALYDYEAITEDDLSFHKGEKFQIL-NSSEGDWWEARSLTTGE---TGYIPS 66
Score = 28.9 bits (63), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 5 LADYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
L DY A +LS HKG++ +++++S DW
Sbjct: 21 LYDYEAITEDDLSFHKGEKFQILNSSEG--DW 50
>pdb|2HDA|A Chain A, Yes Sh3 Domain
Length = 64
Score = 33.9 bits (76), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 38 LGSGIEMTWVLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVR 83
+G G+ + L DY A T +LS KG++ ++++N+ DW R
Sbjct: 1 MGGGVTIFVALYDYEARTTEDLSFKKGERFQIINNTEG--DWWEAR 44
Score = 29.3 bits (64), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 5 LADYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
L DY A T +LS KG++ ++++N+ DW
Sbjct: 11 LYDYEARTTEDLSFKKGERFQIINNTEG--DW 40
>pdb|3H0F|A Chain A, Crystal Structure Of The Human Fyn Sh3 R96w Mutant
Length = 73
Score = 33.9 bits (76), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 39 GSGIEMTWVLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPT 97
G+G+ + L DY A +LS HKG++ +++ NSS W L+ GE G +P+
Sbjct: 12 GTGVTLFVALYDYEAWTEDDLSFHKGEKFQIL-NSSEGDWWEARSLTTGE---TGYIPS 66
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 4 VLADYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
L DY A +LS HKG++ +++++S DW
Sbjct: 20 ALYDYEAWTEDDLSFHKGEKFQILNSSEG--DW 50
>pdb|1G83|A Chain A, Crystal Structure Of Fyn Sh3-Sh2
pdb|1G83|B Chain B, Crystal Structure Of Fyn Sh3-Sh2
Length = 165
Score = 33.5 bits (75), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 40 SGIEMTWVLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPT 97
+G+ + L DY A +LS HKG++ +++ NSS W L+ GE G +P+
Sbjct: 1 TGVTLFVALYDYEARTEDDLSFHKGEKFQIL-NSSEGDWWEARSLTTGE---TGYIPS 54
Score = 29.3 bits (64), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 4 VLADYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
L DY A +LS HKG++ +++++S DW
Sbjct: 8 ALYDYEARTEDDLSFHKGEKFQILNSSEG--DW 38
>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor
Length = 535
Score = 33.1 bits (74), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 6/61 (9%)
Query: 38 LGSGIEMTWVLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVR-LSLGEECSEGLVP 96
L G+ L DY + T+LS KG+++++V+N+ DW L LS G+ G +P
Sbjct: 81 LAGGVTTFVALYDYESRTETDLSFKKGERLQIVNNTEG--DWWLAHSLSTGQ---TGYIP 135
Query: 97 T 97
+
Sbjct: 136 S 136
Score = 30.0 bits (66), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Query: 4 VLADYTAANTTELSVHKGQQVEVVHNSSAPPDWALGSGI---EMTWVLADYTA 53
L DY + T+LS KG+++++V+N+ DW L + + ++ ++Y A
Sbjct: 90 ALYDYESRTETDLSFKKGERLQIVNNTEG--DWWLAHSLSTGQTGYIPSNYVA 140
>pdb|3CQT|A Chain A, N53i V55l Mutant Of Fyn Sh3 Domain
Length = 79
Score = 32.7 bits (73), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 48 LADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPTCVL 100
L DY A +LS HKG++ +++ NSS W L+ GE G +P+ L
Sbjct: 11 LYDYEARTEDDLSFHKGEKFQIL-NSSEGDWWEARSLTTGE---TGYIPSIYL 59
Score = 29.3 bits (64), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 5 LADYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
L DY A +LS HKG++ +++++S DW
Sbjct: 11 LYDYEARTEDDLSFHKGEKFQILNSSEG--DW 40
>pdb|2L2P|A Chain A, Folding Intermediate Of The Fyn Sh3 A39vN53PV55L FROM NMR
RELAXATION Dispersion Experiments
pdb|2LP5|A Chain A, Native Structure Of The Fyn Sh3 A39vN53PV55L
Length = 66
Score = 32.7 bits (73), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 6/54 (11%)
Query: 48 LADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVR-LSLGEECSEGLVPTCVL 100
L DY A +LS HKG++ +++++S DW VR L+ GE G +P+ L
Sbjct: 13 LYDYEARTEDDLSFHKGEKFQILNSSEG--DWWEVRSLTTGE---TGYIPSPYL 61
Score = 29.3 bits (64), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 5 LADYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
L DY A +LS HKG++ +++++S DW
Sbjct: 13 LYDYEARTEDDLSFHKGEKFQILNSSEG--DW 42
>pdb|1AZG|B Chain B, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase Kinase Complexed With The Synthetic
Peptide P2l Corresponding To Residues 91-104 Of The P85
Subunit Of Pi3-Kinase, Minimized Average (Probmap)
Structure
pdb|1NYF|A Chain A, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase, Minimized Average (Probmap) Structure
pdb|1NYG|A Chain A, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase, Family Of 20 Structures
Length = 67
Score = 32.3 bits (72), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 40 SGIEMTWVLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPT 97
+G+ + L DY A +LS HKG++ +++ NSS W L+ GE G +P+
Sbjct: 1 TGVTLFVALYDYEARTEDDLSFHKGEKFQIL-NSSEGDWWEARSLTTGE---TGYIPS 54
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 5 LADYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
L DY A +LS HKG++ +++++S DW
Sbjct: 9 LYDYEARTEDDLSFHKGEKFQILNSSEG--DW 38
>pdb|1A0N|B Chain B, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase Complexed With The Synthetic Peptide
P2l Corresponding To Residues 91-104 Of The P85 Subunit
Of Pi3- Kinase, Family Of 25 Structures
Length = 69
Score = 32.3 bits (72), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 40 SGIEMTWVLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPT 97
+G+ + L DY A +LS HKG++ +++ NSS W L+ GE G +P+
Sbjct: 3 TGVTLFVALYDYEARTEDDLSFHKGEKFQIL-NSSEGDWWEARSLTTGE---TGYIPS 56
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 5 LADYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
L DY A +LS HKG++ +++++S DW
Sbjct: 11 LYDYEARTEDDLSFHKGEKFQILNSSEG--DW 40
>pdb|1PRL|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1PRM|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1RLP|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1RLQ|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1SRL|A Chain A, 1h And 15n Assignments And Secondary Structure Of The
Src Sh3 Domain
pdb|1SRM|A Chain A, 1h And 15n Assignments And Secondary Structure Of The
Src Sh3 Domain
Length = 64
Score = 32.0 bits (71), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 6/62 (9%)
Query: 37 ALGSGIEMTWVLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVR-LSLGEECSEGLV 95
AL G+ L DY + T+LS KG+++++V+N+ DW L L+ G+ G +
Sbjct: 2 ALAGGVTTFVALYDYESRTETDLSFKKGERLQIVNNTEG--DWWLAHSLTTGQ---TGYI 56
Query: 96 PT 97
P+
Sbjct: 57 PS 58
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Query: 5 LADYTAANTTELSVHKGQQVEVVHNSSAPPDWAL 38
L DY + T+LS KG+++++V+N+ DW L
Sbjct: 13 LYDYESRTETDLSFKKGERLQIVNNTEG--DWWL 44
>pdb|2YT6|A Chain A, Solution Structure Of The Sh3_1 Domain Of Yamaguchi
Sarcoma Viral (V-Yes) Oncogene Homolog 1
Length = 109
Score = 32.0 bits (71), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 37 ALGSGIEMTWVLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVR 83
L G+ + L DY A T +LS KG++ ++++N+ DW R
Sbjct: 22 GLTGGVTIFVALYDYEARTTEDLSFKKGERFQIINNTEG--DWWEAR 66
Score = 29.6 bits (65), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 4 VLADYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
L DY A T +LS KG++ ++++N+ DW
Sbjct: 32 ALYDYEARTTEDLSFKKGERFQIINNTEG--DW 62
>pdb|3GF9|A Chain A, Crystal Structure Of Human Intersectin 2 Rhogef Domain
Length = 295
Score = 31.6 bits (70), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 48 LADYTATNTTELSVHKGQQVEVVHNSSAPPDW 79
+ DY A N ELS KGQ + V++ PDW
Sbjct: 24 MYDYAANNEDELSFSKGQLINVMNKDD--PDW 53
Score = 30.8 bits (68), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 5 LADYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
+ DY A N ELS KGQ + V++ PDW
Sbjct: 24 MYDYAANNEDELSFSKGQLINVMNKDD--PDW 53
>pdb|3JV3|A Chain A, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l
pdb|3JV3|B Chain B, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l
Length = 283
Score = 31.2 bits (69), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 5 LADYTAANTTELSVHKGQQVEVVHNSSAPPDWALG 39
+ DYTA N EL+ KGQ + V++ PDW G
Sbjct: 8 MYDYTAQNDDELAFSKGQIINVLNKED--PDWWKG 40
Score = 31.2 bits (69), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 48 LADYTATNTTELSVHKGQQVEVVHNSSAPPDW 79
+ DYTA N EL+ KGQ + V++ PDW
Sbjct: 8 MYDYTAQNDDELAFSKGQIINVLNKED--PDW 37
>pdb|1X43|A Chain A, Solution Structure Of The Sh3 Domain Of Endophilin B1
(Sh3g1b1)
Length = 81
Score = 31.2 bits (69), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 4 VLADYTAANTTELSVHKGQQVEVVHNSSAPPDWALG 39
VL DY AAN+TELS+ + + V DW +G
Sbjct: 22 VLYDYDAANSTELSLLADEVITVFSVVGMDSDWLMG 57
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 6/56 (10%)
Query: 47 VLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSE-GLVPTCVLK 101
VL DY A N+TELS+ + + V DW +GE ++ G VP L+
Sbjct: 22 VLYDYDAANSTELSLLADEVITVFSVVGMDSDWL-----MGERGNQKGKVPITYLE 72
>pdb|1EFN|A Chain A, Hiv-1 Nef Protein In Complex With R96i Mutant Fyn Sh3
Domain
pdb|1EFN|C Chain C, Hiv-1 Nef Protein In Complex With R96i Mutant Fyn Sh3
Domain
Length = 59
Score = 31.2 bits (69), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 48 LADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPT 97
L DY A +LS HKG++ +++ NSS W L+ GE G +P+
Sbjct: 6 LYDYEAITEDDLSFHKGEKFQIL-NSSEGDWWEARSLTTGE---TGYIPS 51
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 5 LADYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
L DY A +LS HKG++ +++++S DW
Sbjct: 6 LYDYEAITEDDLSFHKGEKFQILNSSEG--DW 35
>pdb|1AVZ|C Chain C, V-1 Nef Protein In Complex With Wild Type Fyn Sh3 Domain
Length = 57
Score = 30.8 bits (68), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 48 LADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPT 97
L DY A +LS HKG++ +++ NSS W L+ GE G +P+
Sbjct: 6 LYDYEARTEDDLSFHKGEKFQIL-NSSEGDWWEARSLTTGE---TGYIPS 51
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 5 LADYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
L DY A +LS HKG++ +++++S DW
Sbjct: 6 LYDYEARTEDDLSFHKGEKFQILNSSEG--DW 35
>pdb|1SHF|A Chain A, Crystal Structure Of The Sh3 Domain In Human Fyn;
Comparison Of The Three-Dimensional Structures Of Sh3
Domains In Tyrosine Kinases And Spectrin
pdb|1SHF|B Chain B, Crystal Structure Of The Sh3 Domain In Human Fyn;
Comparison Of The Three-Dimensional Structures Of Sh3
Domains In Tyrosine Kinases And Spectrin
pdb|1ZBJ|A Chain A, Inferential Structure Determination Of The Fyn Sh3
Domain Using Noesy Data From A 15n,H2 Enriched Protein
Length = 59
Score = 30.8 bits (68), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 48 LADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPT 97
L DY A +LS HKG++ +++ NSS W L+ GE G +P+
Sbjct: 7 LYDYEARTEDDLSFHKGEKFQIL-NSSEGDWWEARSLTTGE---TGYIPS 52
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 5 LADYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
L DY A +LS HKG++ +++++S DW
Sbjct: 7 LYDYEARTEDDLSFHKGEKFQILNSSEG--DW 36
>pdb|1M27|C Chain C, Crystal Structure Of SapFYNSH3SLAM TERNARY COMPLEX
Length = 61
Score = 30.8 bits (68), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 48 LADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPT 97
L DY A +LS HKG++ +++ NSS W L+ GE G +P+
Sbjct: 7 LYDYEARTEDDLSFHKGEKFQIL-NSSEGDWWEARSLTTGE---TGYIPS 52
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 5 LADYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
L DY A +LS HKG++ +++++S DW
Sbjct: 7 LYDYEARTEDDLSFHKGEKFQILNSSEG--DW 36
>pdb|1UDL|A Chain A, The Solution Structure Of The Fifth Sh3 Domain Of
Intersectin 2 (Kiaa1256)
Length = 98
Score = 30.4 bits (67), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 47 VLADYTATNTTELSVHKGQQVEVVHNSSAPPDW 79
+ DY A N ELS KGQ + V++ PDW
Sbjct: 39 AMYDYAANNEDELSFSKGQLINVMNKDD--PDW 69
Score = 30.4 bits (67), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 4 VLADYTAANTTELSVHKGQQVEVVHNSSAPPDWALG 39
+ DY A N ELS KGQ + V++ PDW G
Sbjct: 39 AMYDYAANNEDELSFSKGQLINVMNKDD--PDWWQG 72
>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An
Inhibitor
Length = 452
Score = 30.4 bits (67), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 6/51 (11%)
Query: 48 LADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVR-LSLGEECSEGLVPT 97
L DY + T+LS KG+++++V+N+ DW L LS G+ G +P+
Sbjct: 8 LYDYESRTETDLSFKKGERLQIVNNTEG--DWWLAHSLSTGQ---TGYIPS 53
Score = 30.0 bits (66), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 5 LADYTAANTTELSVHKGQQVEVVHNSSAPPDWALGSGI 42
L DY + T+LS KG+++++V+N+ DW L +
Sbjct: 8 LYDYESRTETDLSFKKGERLQIVNNTEG--DWWLAHSL 43
>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src
pdb|2SRC|A Chain A, Crystal Structure Of Human Tyrosine-protein Kinase
C-src, In Complex With Amp-pnp
Length = 452
Score = 30.4 bits (67), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 6/51 (11%)
Query: 48 LADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVR-LSLGEECSEGLVPT 97
L DY + T+LS KG+++++V+N+ DW L LS G+ G +P+
Sbjct: 8 LYDYESRTETDLSFKKGERLQIVNNTEG--DWWLAHSLSTGQ---TGYIPS 53
Score = 30.0 bits (66), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 5 LADYTAANTTELSVHKGQQVEVVHNSSAPPDWALGSGI 42
L DY + T+LS KG+++++V+N+ DW L +
Sbjct: 8 LYDYESRTETDLSFKKGERLQIVNNTEG--DWWLAHSL 43
>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly
Mutant) In Complex With N6-Benzyl Adp
Length = 452
Score = 30.4 bits (67), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 6/51 (11%)
Query: 48 LADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVR-LSLGEECSEGLVPT 97
L DY + T+LS KG+++++V+N+ DW L LS G+ G +P+
Sbjct: 8 LYDYESRTETDLSFKKGERLQIVNNTEG--DWWLAHSLSTGQ---TGYIPS 53
Score = 30.0 bits (66), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 5 LADYTAANTTELSVHKGQQVEVVHNSSAPPDWALGSGI 42
L DY + T+LS KG+++++V+N+ DW L +
Sbjct: 8 LYDYESRTETDLSFKKGERLQIVNNTEG--DWWLAHSL 43
>pdb|4D8D|A Chain A, Crystal Structure Of Hiv-1 Nef Fyn-sh3 R96w Variant
pdb|4D8D|C Chain C, Crystal Structure Of Hiv-1 Nef Fyn-sh3 R96w Variant
Length = 58
Score = 30.4 bits (67), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 48 LADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPT 97
L DY A +LS HKG++ +++ NSS W L+ GE G +P+
Sbjct: 7 LYDYEAWTEDDLSFHKGEKFQIL-NSSEGDWWEARSLTTGE---TGYIPS 52
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 5 LADYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
L DY A +LS HKG++ +++++S DW
Sbjct: 7 LYDYEAWTEDDLSFHKGEKFQILNSSEG--DW 36
>pdb|3FJ5|A Chain A, Crystal Structure Of The C-Src-Sh3 Domain
pdb|3FJ5|B Chain B, Crystal Structure Of The C-Src-Sh3 Domain
Length = 57
Score = 30.4 bits (67), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
Query: 1 MTWV-LADYTAANTTELSVHKGQQVEVVHNSSAPPDWALGSGI 42
MT+V L DY + T+LS KG+++++V+N+ DW L +
Sbjct: 1 MTFVALYDYESRTETDLSFKKGERLQIVNNTEG--DWWLAHSL 41
Score = 30.4 bits (67), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 26/39 (66%), Gaps = 3/39 (7%)
Query: 44 MTWV-LADYTATNTTELSVHKGQQVEVVHNSSAPPDWAL 81
MT+V L DY + T+LS KG+++++V+N+ DW L
Sbjct: 1 MTFVALYDYESRTETDLSFKKGERLQIVNNTEG--DWWL 37
>pdb|3NGP|A Chain A, High Resolution Structure Of Alpha-Spectrin Sh3 Domain
Mutant With A Redesigned Core
Length = 62
Score = 30.4 bits (67), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 40 SGIEMTWVLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPTCV 99
+G E+ VL DY + EL+V KG + +++ S DW + ++ +G VP
Sbjct: 4 TGKELVLVLYDYQEKSPRELTVKKGDILTLLN--STNKDWWKIEVN----GRQGFVPAAY 57
Query: 100 LKQ 102
LK+
Sbjct: 58 LKK 60
>pdb|4HXJ|A Chain A, Crystal Structure Of Sh3:rgt Complex
pdb|4HXJ|B Chain B, Crystal Structure Of Sh3:rgt Complex
Length = 60
Score = 30.4 bits (67), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 6/52 (11%)
Query: 47 VLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVR-LSLGEECSEGLVPT 97
L DY + T+LS KG+++++V+N+ DW L LS G+ G +P+
Sbjct: 7 ALYDYESRTETDLSFKKGERLQIVNNTEG--DWWLAHSLSTGQ---TGYIPS 53
Score = 28.9 bits (63), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 4 VLADYTAANTTELSVHKGQQVEVVHNSSAPPDWAL 38
L DY + T+LS KG+++++V+N+ DW L
Sbjct: 7 ALYDYESRTETDLSFKKGERLQIVNNTEG--DWWL 39
>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase
Length = 453
Score = 30.4 bits (67), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 41 GIEMTWVLADYTATNTTELSVHKGQQVEVVHNSSAPPDWAL 81
G+ L DY + T+LS KG+++++V+N+ DW L
Sbjct: 2 GVTTFVALYDYESRTETDLSFKKGERLQIVNNTEG--DWWL 40
Score = 30.0 bits (66), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 5 LADYTAANTTELSVHKGQQVEVVHNSSAPPDWALGSGI 42
L DY + T+LS KG+++++V+N+ DW L +
Sbjct: 9 LYDYESRTETDLSFKKGERLQIVNNTEG--DWWLAHSL 44
>pdb|4ESR|A Chain A, Molecular And Structural Characterization Of The Sh3
Domain Of Ahi-1 In Regulation Of Cellular Resistance Of
Bcr-Abl+ Chronic Myeloid Leukemia Cells To Tyrosine
Kinase Inhibitors
pdb|4ESR|B Chain B, Molecular And Structural Characterization Of The Sh3
Domain Of Ahi-1 In Regulation Of Cellular Resistance Of
Bcr-Abl+ Chronic Myeloid Leukemia Cells To Tyrosine
Kinase Inhibitors
Length = 69
Score = 30.4 bits (67), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 5 LADYTAANTTELSVHKGQQVEVVHNSSAPPDWALGS 40
L DYTA + EL++H+G + V + DW GS
Sbjct: 12 LYDYTANRSDELTIHRGDIIRVFFKDN--EDWWYGS 45
Score = 30.0 bits (66), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 48 LADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEE 89
L DYTA + EL++H+G + V + DW + G+E
Sbjct: 12 LYDYTANRSDELTIHRGDIIRVFFKDN--EDWWYGSIGKGQE 51
>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family-
Selective Tyrosine Kinase Inhibitor
pdb|2C0I|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0I|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0O|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0O|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0T|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-641359
pdb|2C0T|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-641359
Length = 454
Score = 30.0 bits (66), Expect = 0.44, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
Query: 37 ALGSGIEMTWV-LADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLV 95
A+GSGI + V L DY A + +LS KG Q+ V+ S +W R SL EG +
Sbjct: 2 AMGSGIRIIVVALYDYEAIHHEDLSFQKGDQMVVLEESG---EWWKAR-SLATR-KEGYI 56
Query: 96 PT 97
P+
Sbjct: 57 PS 58
>pdb|2A37|A Chain A, Solution Structure Of The T22g Mutant Of N-Terminal Sh3
Domain Of Drk (Drkn Sh3 Domain)
pdb|2AZV|A Chain A, Solution Structure Of The T22g Mutant Of N-Terminal Sh3
Domain Of Drk (Calculated Without Noes)
Length = 59
Score = 30.0 bits (66), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 50 DYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPTCVLK 101
D++AT ELS KGQ ++++ N +W L + EGL+P+ ++
Sbjct: 8 DFSATADDELSFRKGQILKIL-NMEDDSNWYRAEL----DGKEGLIPSNYIE 54
>pdb|3THK|A Chain A, Structure Of Sh3 Chimera With A Type Ii Ligand Linked To
The Chain C- Terminal
pdb|3THK|B Chain B, Structure Of Sh3 Chimera With A Type Ii Ligand Linked To
The Chain C- Terminal
Length = 73
Score = 30.0 bits (66), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Query: 38 LGSGIEMTWVLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPT 97
+G+G E+ L DY + E+++ KG + +++ S DW V ++ +G VP
Sbjct: 1 MGTGKELVLALYDYQEKSPREVTMKKGDILTLLN--STNKDWWKVEVN----DRQGFVPA 54
Query: 98 CVLKQPPPS 106
+K+ P+
Sbjct: 55 AYVKKLDPA 63
>pdb|1E7O|A Chain A, A-Spectrin Sh3 Domain A11v, V23l, M25v, V44i, V58l
Mutations
Length = 62
Score = 30.0 bits (66), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 40 SGIEMTWVLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPTCV 99
+G E+ VL DY + EL+V KG + +++ S DW + ++ +G VP
Sbjct: 4 TGKELVLVLYDYQEKSPRELTVKKGDILTLLN--STNKDWWKIEVN----DRQGFVPAAY 57
Query: 100 LKQ 102
LK+
Sbjct: 58 LKK 60
>pdb|1E6G|A Chain A, A-Spectrin Sh3 Domain A11v, V23l, M25i, V53i, V58l Mutant
Length = 62
Score = 29.6 bits (65), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 40 SGIEMTWVLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPTCV 99
+G E+ VL DY + EL++ KG + +++ S DW V ++ +G +P
Sbjct: 4 TGKELVLVLYDYQEKSPRELTIKKGDILTLLN--STNKDWWKVEVN----DRQGFIPAAY 57
Query: 100 LKQ 102
LK+
Sbjct: 58 LKK 60
>pdb|1WXB|A Chain A, Solution Structure Of The Sh3 Domain From Human Epidermal
Growth Factor Receptor Pathway Substrate 8-Like Protein
Length = 68
Score = 29.6 bits (65), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Query: 39 GSGIEMTWVLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPTC 98
GS + +L D+TA N ELSV K + +EV+ + W +R G+ G VP
Sbjct: 4 GSSGKYVKILYDFTARNANELSVLKDEVLEVLEDGR---QWWKLRSRSGQ---AGYVPCN 57
Query: 99 VLKQ 102
+L +
Sbjct: 58 ILGE 61
Score = 28.1 bits (61), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 4 VLADYTAANTTELSVHKGQQVEVVHN 29
+L D+TA N ELSV K + +EV+ +
Sbjct: 12 ILYDFTARNANELSVLKDEVLEVLED 37
>pdb|1X2P|A Chain A, Solution Structure Of The Sh3 Domain Of The Protein
Arginine N-Methyltransferase 2
Length = 68
Score = 29.3 bits (64), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Query: 39 GSGIEMTWVLADYTATNTTELSVHKGQQVEVVHNSSAPPDW 79
GS E +ADY AT+ T+LS +G+++ ++ ++A DW
Sbjct: 4 GSSGEEFVAIADYAATDETQLSFLRGEKILILRQTTA--DW 42
Score = 27.7 bits (60), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 4 VLADYTAANTTELSVHKGQQVEVVHNSSAPPDWALG 39
+ADY A + T+LS +G+++ ++ ++A DW G
Sbjct: 12 AIADYAATDETQLSFLRGEKILILRQTTA--DWWWG 45
>pdb|1QWE|A Chain A, C-Src Sh3 Domain Complexed With Ligand App12
pdb|1QWF|A Chain A, C-Src Sh3 Domain Complexed With Ligand Vsl12
pdb|1NLO|C Chain C, Structure Of Signal Transduction Protein, Nmr, Minimized
Average Structure
pdb|1NLP|C Chain C, Structure Of Signal Transduction Protein, Nmr, Minimized
Average Structure
Length = 64
Score = 28.9 bits (63), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 6/58 (10%)
Query: 41 GIEMTWVLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVR-LSLGEECSEGLVPT 97
G+ L DY + T+LS KG+++++V+N+ DW L L+ G+ G +P+
Sbjct: 6 GVTTFVALYDYESRTETDLSFKKGERLQIVNNTEG--DWWLAHSLTTGQ---TGYIPS 58
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Query: 5 LADYTAANTTELSVHKGQQVEVVHNSSAPPDWAL 38
L DY + T+LS KG+++++V+N+ DW L
Sbjct: 13 LYDYESRTETDLSFKKGERLQIVNNTEG--DWWL 44
>pdb|1H8K|A Chain A, A-Spectrin Sh3 Domain A11v, V23l, M25v, V53i, V58l Mutant
Length = 62
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 40 SGIEMTWVLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPTCV 99
+G E+ VL DY + E++V KG + +++ S DW V + + +G +P
Sbjct: 4 TGKELVLVLYDYQEKSPREVTVKKGDILTLLN--STNKDWWKVEV----DDRQGFIPAAY 57
Query: 100 LKQ 102
LK+
Sbjct: 58 LKK 60
>pdb|2OI3|A Chain A, Nmr Structure Analysis Of The Hematopoetic Cell Kinase Sh3
Domain Complexed With An Artificial High Affinity Ligand
(Pd1)
pdb|2OJ2|A Chain A, Nmr Structure Analysis Of The Hematopoetic Cell Kinase Sh3
Domain Complexed With An Artificial High Affinity Ligand
(Pd1)
Length = 86
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Query: 28 HNSSAPPDWALGSGIEMTWVLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLG 87
HNS+ P GS + L DY A + +LS KG Q+ V+ S +W R SL
Sbjct: 11 HNSNTPGIREAGSEDIIVVALYDYEAIHHEDLSFQKGDQMVVLEESG---EWWKAR-SLA 66
Query: 88 EECSEGLVPTCVLKQ 102
EG +P+ + +
Sbjct: 67 TR-KEGYIPSNYVAR 80
>pdb|1E6H|A Chain A, A-Spectrin Sh3 Domain A11v, M25i, V44i, V58l Mutants
Length = 62
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 40 SGIEMTWVLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPTCV 99
+G E+ VL DY + E+++ KG + +++ S DW + ++ +G VP
Sbjct: 4 TGKELVLVLYDYQEKSPREVTIKKGDILTLLN--STNKDWWKIEVN----DRQGFVPAAY 57
Query: 100 LKQ 102
LK+
Sbjct: 58 LKK 60
>pdb|1PWT|A Chain A, Thermodynamic Analysis Of Alpha-Spectrin Sh3 And Two Of
Its Circular Permutants With Different Loop Lengths:
Discerning The Reasons For Rapid Folding In Proteins
Length = 61
Score = 28.1 bits (61), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 38 LGSGIEMTWVLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPT 97
+G+G E+ L DY + E+++ KG + +++ S DW V ++ +G VP
Sbjct: 1 MGTGKELVLALYDYQEKSPREVTMKKGDILTLLN--STNKDWWKVEVN----DRQGFVPA 54
Query: 98 CVLKQ 102
+K+
Sbjct: 55 AYVKK 59
>pdb|2EGA|A Chain A, Solution Structure Of The First Sh3 Domain From Human
Kiaa0418 Protein
Length = 70
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
Query: 40 SGIEMTWVLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPTCV 99
SG+E V+++Y +ELS+ G+ V+V+ + + W V S EE +G VP
Sbjct: 6 SGLEQYVVVSNYKKQENSELSLQAGEVVDVIEKNES--GWWFVSTS--EE--QGWVPATY 59
Query: 100 LK 101
L+
Sbjct: 60 LE 61
>pdb|1AWW|A Chain A, Sh3 Domain From Bruton's Tyrosine Kinase, Nmr, 42
Structures
pdb|1AWX|A Chain A, Sh3 Domain From Bruton's Tyrosine Kinase, Nmr, Minimized
Average Structure
Length = 67
Score = 27.7 bits (60), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
Query: 47 VLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPTCVLKQPPPS 106
L DY N +L + KG + ++ S+ P W R G+ EG +P+ + + S
Sbjct: 13 ALYDYMPMNANDLQLRKGDEYFILEESNLP--WWRARDKNGQ---EGYIPSNYVTEAEDS 67
>pdb|2ED0|A Chain A, Solution Structure Of The Sh3 Domain Of Abl Interactor 2
(Abelson Interactor 2)
Length = 78
Score = 27.3 bits (59), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 21/45 (46%)
Query: 29 NSSAPPDWALGSGIEMTWVLADYTATNTTELSVHKGQQVEVVHNS 73
SS P WA S +E + DYT ELS +G + V+ +
Sbjct: 4 GSSGDPPWAPRSYLEKVVAIYDYTKDKEDELSFQEGAIIYVIKKN 48
>pdb|2DLP|A Chain A, Solution Structure Of The Sh3 Domain Of Human Kiaa1783
Protein
Length = 85
Score = 27.3 bits (59), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 4 VLADYTAANTTELSVHKGQQVEVVHNSSAPPDWALGS 40
L Y N + LS H+G ++++ ++ P W GS
Sbjct: 13 ALRSYITDNCSLLSFHRGDLIKLLPVATLEPGWQFGS 49
>pdb|1QLY|A Chain A, Nmr Study Of The Sh3 Domain From Bruton's Tyrosine
Kinase, 20 Structures
Length = 58
Score = 27.3 bits (59), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Query: 48 LADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPT 97
L DY N +L + KG + ++ S+ P W R G+ EG +P+
Sbjct: 7 LYDYMPMNANDLQLRKGDEYFILEESNLP--WWRARDKNGQ---EGYIPS 51
>pdb|1OV3|A Chain A, Structure Of The P22phox-P47phox Complex
pdb|1OV3|B Chain B, Structure Of The P22phox-P47phox Complex
Length = 138
Score = 27.3 bits (59), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Query: 48 LADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPTCVLK 101
+ADY T+ +E+++ G VEVV S + W ++ + G +P L+
Sbjct: 17 IADYEKTSGSEMALSTGDVVEVVEKSES--GWWFCQM----KAKRGWIPASFLE 64
>pdb|1WLP|B Chain B, Solution Structure Of The P22phox-P47phox Complex
Length = 138
Score = 26.9 bits (58), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Query: 48 LADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPTCVLK 101
+ADY T+ +E+++ G VEVV S + W ++ + G +P L+
Sbjct: 16 IADYEKTSGSEMALSTGDVVEVVEKSES--GWWFCQM----KAKRGWIPASFLE 63
>pdb|1NG2|A Chain A, Structure Of Autoinhibited P47phox
Length = 193
Score = 26.9 bits (58), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Query: 47 VLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPTCVLK 101
+ADY T+ +E+++ G VEVV S + W ++ + G +P L+
Sbjct: 16 AIADYEKTSGSEMALSTGDVVEVVEKSES--GWWFCQM----KAKRGWIPASFLE 64
>pdb|1UEC|A Chain A, Crystal Structure Of Autoinhibited Form Of Tandem Sh3
Domain Of P47phox
Length = 193
Score = 26.9 bits (58), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Query: 48 LADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPTCVLK 101
+ADY T+ +E+++ G VEVV S + W ++ + G +P L+
Sbjct: 17 IADYEKTSGSEMALSTGDVVEVVEKSES--GWWFCQM----KAKRGWIPASFLE 64
>pdb|1UFF|A Chain A, Solution Structure Of The First Sh3 Domain Of Human
Intersectin2 (Kiaa1256)
Length = 93
Score = 26.9 bits (58), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 4/82 (4%)
Query: 40 SGIEMTWVLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPTCV 99
SG L + A N E+S + G ++V + P W + + G P
Sbjct: 3 SGSSGYRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSF----QGNFGWFPCNY 58
Query: 100 LKQPPPSVLRTATSPSKRITLP 121
+++ P S A SP K + P
Sbjct: 59 VEKMPSSENEKAVSPKKALLPP 80
>pdb|2FRY|A Chain A, Solution Structure Of The Third Sh3 Domain Of Human Nck2
Adaptor Protein
Length = 61
Score = 26.6 bits (57), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 48 LADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVP 96
L +++ EL+ KG+ +EV+ P+W + + G+ GLVP
Sbjct: 8 LYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQ---VGLVP 53
>pdb|1U5S|A Chain A, Nmr Structure Of The Complex Between Nck-2 Sh3 Domain
And Pinch-1 Lim4 Domain
Length = 71
Score = 26.2 bits (56), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 48 LADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVP 96
L +++ EL+ KG+ +EV+ P+W + + G+ GLVP
Sbjct: 12 LYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQ---VGLVP 57
>pdb|1WX6|A Chain A, Solution Structure Of The Sh3 Domain Of The Human
Cytoplasmic Protein Nck2
Length = 91
Score = 26.2 bits (56), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 48 LADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVP 96
L +++ EL+ KG+ +EV+ P+W + + G+ GLVP
Sbjct: 23 LYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQ---VGLVP 68
>pdb|2DIL|A Chain A, Solution Structure Of The Sh3 Domain Of The Human
Proline- Serine-Threonine Phosphatase-Interacting
Protein 1
Length = 69
Score = 25.8 bits (55), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 40 SGIEMTWVLADYTATNTTELSVHKGQQVEVV 70
SG + L DYTA N EL + G +EV+
Sbjct: 6 SGAQEYRALYDYTAQNPDELDLSAGDILEVI 36
>pdb|2WZP|R Chain R, Structures Of Lactococcal Phage P2 Baseplate Shed Light On
A Novel Mechanism Of Host Attachment And Activation In
Siphoviridae
Length = 375
Score = 25.8 bits (55), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 8 YTAANTTELSVHKGQQVEVVHNSSAPPDWALGS----GIEMTWVLADYTATNTTELSVHK 63
YT++ T +SV G V+++ P + ALG ++M +++ D +N L +
Sbjct: 53 YTSSATLTVSVEVGDIVQILFPEVVPIEEALGKKKKLNLDMVYLVTDVDESNKATLKNYF 112
Query: 64 GQQVE 68
+E
Sbjct: 113 WAMIE 117
>pdb|2X53|Y Chain Y, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Sr
pdb|2X53|Z Chain Z, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Sr
pdb|2X53|1 Chain 1, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Sr
Length = 375
Score = 25.8 bits (55), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 8 YTAANTTELSVHKGQQVEVVHNSSAPPDWALGS----GIEMTWVLADYTATNTTELSVHK 63
YT++ T +SV G V+++ P + ALG ++M +++ D +N L +
Sbjct: 53 YTSSATLTVSVEVGDIVQILFPEVVPIEEALGKKKKLNLDMVYLVTDVDESNKATLKNYF 112
Query: 64 GQQVE 68
+E
Sbjct: 113 WAMIE 117
>pdb|2X54|Y Chain Y, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Ca (Part 1 Of 2)
pdb|2X54|Z Chain Z, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Ca (Part 1 Of 2)
pdb|2X54|0 Chain 0, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Ca (Part 1 Of 2)
pdb|2X5A|Y Chain Y, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Ca (Part 2 Of 2)
pdb|2X5A|Z Chain Z, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Ca (Part 2 Of 2)
pdb|2X5A|0 Chain 0, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Ca (Part 2 Of 2)
Length = 372
Score = 25.8 bits (55), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 8 YTAANTTELSVHKGQQVEVVHNSSAPPDWALGS----GIEMTWVLADYTATNTTELSVHK 63
YT++ T +SV G V+++ P + ALG ++M +++ D +N L +
Sbjct: 53 YTSSATLTVSVEVGDIVQILFPEVVPIEEALGKKKKLNLDMVYLVTDVDESNKATLKNYF 112
Query: 64 GQQVE 68
+E
Sbjct: 113 WAMIE 117
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.128 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,646,767
Number of Sequences: 62578
Number of extensions: 169078
Number of successful extensions: 424
Number of sequences better than 100.0: 65
Number of HSP's better than 100.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 315
Number of HSP's gapped (non-prelim): 127
length of query: 147
length of database: 14,973,337
effective HSP length: 90
effective length of query: 57
effective length of database: 9,341,317
effective search space: 532455069
effective search space used: 532455069
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.7 bits)