Query psy12864
Match_columns 147
No_of_seqs 116 out of 170
Neff 4.4
Searched_HMMs 46136
Date Fri Aug 16 21:43:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12864.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12864hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4226|consensus 99.9 3.4E-22 7.4E-27 171.1 8.8 111 2-117 110-264 (379)
2 PF14604 SH3_9: Variant SH3 do 99.5 8.5E-15 1.8E-19 94.2 4.3 49 47-101 1-49 (49)
3 PF00018 SH3_1: SH3 domain; I 99.5 7.8E-14 1.7E-18 88.2 4.2 48 46-97 1-48 (48)
4 KOG1029|consensus 99.4 1.2E-13 2.6E-18 130.3 4.7 93 4-102 984-1107(1118)
5 PF07653 SH3_2: Variant SH3 do 99.4 5.5E-13 1.2E-17 86.5 4.9 52 45-102 2-54 (55)
6 smart00326 SH3 Src homology 3 99.3 3.7E-12 8E-17 79.0 5.6 54 44-102 4-57 (58)
7 cd00174 SH3 Src homology 3 dom 99.3 3.7E-12 8.1E-17 78.4 5.1 52 45-101 2-53 (54)
8 KOG3557|consensus 99.1 3.1E-11 6.6E-16 112.1 1.9 68 44-117 502-569 (721)
9 KOG4226|consensus 99.0 6.8E-10 1.5E-14 95.9 7.7 93 2-103 7-162 (379)
10 KOG4348|consensus 99.0 4.3E-10 9.3E-15 101.7 6.3 71 43-117 262-336 (627)
11 KOG2199|consensus 98.8 1.9E-09 4.1E-14 96.2 1.2 55 44-104 217-271 (462)
12 KOG0515|consensus 98.8 2.8E-09 6E-14 98.4 2.2 62 44-109 685-747 (752)
13 KOG3875|consensus 98.8 7.8E-10 1.7E-14 96.2 -1.3 67 43-115 269-338 (362)
14 KOG1029|consensus 98.7 5.3E-09 1.2E-13 99.5 3.3 93 4-103 698-867 (1118)
15 KOG4278|consensus 98.7 1.3E-08 2.7E-13 96.3 5.3 58 44-106 92-149 (1157)
16 KOG0162|consensus 98.6 3.1E-08 6.7E-13 94.1 3.0 54 43-102 1052-1105(1106)
17 KOG4348|consensus 98.5 4.8E-08 1.1E-12 88.6 1.3 97 3-107 5-159 (627)
18 KOG2996|consensus 98.4 5.1E-07 1.1E-11 84.4 5.2 68 34-105 795-864 (865)
19 KOG4792|consensus 98.3 2.2E-07 4.8E-12 78.7 0.7 56 43-103 125-180 (293)
20 KOG2856|consensus 98.3 2E-07 4.4E-12 83.0 0.4 53 45-101 417-469 (472)
21 KOG4225|consensus 98.2 2.7E-06 5.9E-11 76.9 5.7 56 44-105 232-287 (489)
22 KOG4225|consensus 98.1 4.5E-06 9.7E-11 75.5 6.2 99 4-106 235-364 (489)
23 KOG0197|consensus 98.1 1.2E-06 2.5E-11 79.5 1.9 57 43-103 12-69 (468)
24 KOG1118|consensus 98.1 1.6E-06 3.6E-11 75.7 1.8 55 43-103 307-361 (366)
25 KOG2070|consensus 98.0 1.1E-05 2.5E-10 74.3 5.9 55 41-101 16-70 (661)
26 KOG1843|consensus 97.5 6.9E-05 1.5E-09 67.7 2.4 55 44-102 418-472 (473)
27 PF00018 SH3_1: SH3 domain; I 97.4 0.00012 2.6E-09 46.0 2.1 35 3-39 1-35 (48)
28 PF08239 SH3_3: Bacterial SH3 97.3 0.00037 8E-09 44.2 4.2 39 59-101 17-55 (55)
29 PF14604 SH3_9: Variant SH3 do 97.2 0.00019 4.2E-09 45.8 2.0 34 4-39 1-34 (49)
30 KOG3655|consensus 97.2 0.00012 2.6E-09 66.8 1.2 53 46-103 431-483 (484)
31 KOG3601|consensus 97.2 4.9E-05 1.1E-09 63.3 -1.4 52 46-102 4-55 (222)
32 KOG2546|consensus 97.2 0.00011 2.4E-09 66.5 0.6 64 34-103 415-478 (483)
33 KOG3601|consensus 96.9 0.00031 6.8E-09 58.6 1.2 54 45-104 166-219 (222)
34 PRK10884 SH3 domain-containing 96.9 0.0011 2.3E-08 54.5 3.8 43 60-106 49-91 (206)
35 PF07653 SH3_2: Variant SH3 do 96.8 0.00083 1.8E-08 43.2 2.1 35 3-39 3-38 (55)
36 KOG1264|consensus 96.8 0.0006 1.3E-08 66.3 1.7 54 45-103 777-830 (1267)
37 smart00287 SH3b Bacterial SH3 96.7 0.0033 7.1E-08 40.5 4.2 37 60-101 26-62 (63)
38 PF14603 hSH3: Helically-exten 96.6 0.0022 4.8E-08 46.9 3.2 47 54-105 28-74 (89)
39 KOG3771|consensus 96.5 0.0012 2.6E-08 60.1 1.7 57 42-99 400-457 (460)
40 cd00174 SH3 Src homology 3 dom 96.4 0.0045 9.8E-08 37.4 3.5 36 2-39 2-37 (54)
41 KOG2528|consensus 96.4 0.003 6.4E-08 57.7 3.4 55 46-104 6-60 (490)
42 KOG1702|consensus 96.3 0.0046 9.9E-08 52.2 3.9 55 43-101 208-262 (264)
43 KOG3523|consensus 96.3 0.0012 2.5E-08 62.3 0.2 57 44-104 610-666 (695)
44 smart00326 SH3 Src homology 3 96.2 0.0053 1.2E-07 37.4 3.1 36 2-39 5-40 (58)
45 KOG3725|consensus 96.2 0.0012 2.6E-08 57.4 0.1 56 43-102 318-373 (375)
46 KOG3632|consensus 96.2 0.0048 1E-07 61.0 3.8 60 43-107 1139-1206(1335)
47 PF06347 SH3_4: Bacterial SH3 96.1 0.011 2.3E-07 38.0 3.9 35 59-100 19-53 (55)
48 KOG4773|consensus 95.9 0.0018 3.9E-08 57.6 -0.4 54 44-103 177-230 (386)
49 KOG4429|consensus 93.9 0.025 5.4E-07 50.1 1.1 55 44-104 365-419 (421)
50 COG3103 SH3 domain protein [Si 93.9 0.076 1.6E-06 43.9 3.9 43 60-106 49-91 (205)
51 KOG4792|consensus 93.8 0.13 2.9E-06 44.1 5.2 92 5-104 130-285 (293)
52 KOG2199|consensus 93.1 0.051 1.1E-06 49.4 1.8 35 4-40 220-254 (462)
53 KOG1451|consensus 92.0 0.16 3.4E-06 48.5 3.5 55 43-102 757-811 (812)
54 KOG3632|consensus 91.6 0.1 2.2E-06 52.1 2.0 55 44-103 1246-1307(1335)
55 PRK13914 invasion associated s 90.8 0.33 7.1E-06 44.8 4.3 43 58-105 102-144 (481)
56 KOG0609|consensus 90.7 0.097 2.1E-06 48.8 0.8 53 46-100 218-278 (542)
57 KOG2996|consensus 90.3 0.25 5.4E-06 47.3 3.1 49 57-108 625-673 (865)
58 KOG3565|consensus 90.3 0.07 1.5E-06 50.5 -0.5 57 45-104 581-637 (640)
59 KOG2222|consensus 89.9 0.087 1.9E-06 49.5 -0.2 55 46-106 552-606 (848)
60 KOG0040|consensus 88.7 0.016 3.5E-07 59.7 -6.3 58 43-106 969-1026(2399)
61 KOG0199|consensus 85.9 1.2 2.5E-05 44.0 4.6 53 46-101 378-430 (1039)
62 KOG3705|consensus 85.7 0.77 1.7E-05 42.5 3.1 55 42-100 509-563 (580)
63 KOG3775|consensus 85.6 0.73 1.6E-05 42.1 2.9 57 44-104 264-320 (482)
64 KOG4575|consensus 84.9 2.8 6E-05 40.7 6.5 53 44-100 10-62 (874)
65 KOG1843|consensus 84.2 0.67 1.5E-05 42.5 2.1 38 3-40 420-457 (473)
66 KOG2856|consensus 84.2 0.42 9.1E-06 43.5 0.8 36 3-39 418-453 (472)
67 KOG3812|consensus 77.9 0.82 1.8E-05 41.4 0.4 41 55-98 78-118 (475)
68 KOG0162|consensus 76.0 2.2 4.7E-05 42.1 2.7 35 3-39 1055-1089(1106)
69 KOG3580|consensus 74.5 4.7 0.0001 39.2 4.5 82 16-97 474-562 (1027)
70 KOG4278|consensus 73.5 3.4 7.3E-05 40.7 3.3 30 1-30 92-121 (1157)
71 KOG0515|consensus 71.1 3.2 7E-05 39.6 2.5 36 2-37 686-722 (752)
72 PF12913 SH3_6: SH3 domain of 70.9 8.7 0.00019 25.6 3.9 38 55-97 17-54 (54)
73 KOG3557|consensus 70.4 1.4 3E-05 42.4 -0.1 28 3-30 504-531 (721)
74 KOG2070|consensus 67.2 4.8 0.0001 38.1 2.7 31 5-37 23-53 (661)
75 KOG3875|consensus 64.8 1.6 3.5E-05 38.9 -0.8 27 4-30 273-299 (362)
76 COG3807 Uncharacterized protei 62.8 2.7 5.8E-05 34.1 0.2 35 61-101 61-95 (171)
77 KOG2546|consensus 61.6 4.6 0.0001 37.3 1.5 34 3-38 427-460 (483)
78 PF05641 Agenet: Agenet domain 59.9 9.9 0.00022 25.4 2.6 25 61-85 1-26 (68)
79 KOG1118|consensus 54.2 9.5 0.00021 34.1 2.2 33 4-38 311-343 (366)
80 KOG3771|consensus 53.1 8.2 0.00018 35.7 1.7 34 4-38 405-438 (460)
81 PF11302 DUF3104: Protein of u 52.3 18 0.00039 25.8 3.0 27 59-85 4-34 (75)
82 smart00743 Agenet Tudor-like d 52.3 20 0.00043 22.9 3.0 24 60-85 2-25 (61)
83 PF01957 NfeD: NfeD-like C-ter 50.5 12 0.00026 27.1 2.0 23 50-74 113-135 (144)
84 PF05506 DUF756: Domain of unk 41.2 1.2E+02 0.0025 20.9 7.7 46 40-85 30-77 (89)
85 KOG0199|consensus 30.1 54 0.0012 32.9 3.3 36 3-39 378-413 (1039)
86 KOG2500|consensus 24.1 1.1E+02 0.0025 26.3 3.9 44 50-96 141-188 (253)
87 COG4297 Uncharacterized protei 21.5 97 0.0021 25.0 2.8 27 43-69 66-97 (163)
No 1
>KOG4226|consensus
Probab=99.87 E-value=3.4e-22 Score=171.06 Aligned_cols=111 Identities=32% Similarity=0.469 Sum_probs=92.2
Q ss_pred eEEEeeeccccccccceeeceEEEEeecCCCCCCcccC----------Ccc-----------------------------
Q psy12864 2 TWVLADYTAANTTELSVHKGQQVEVVHNSSAPPDWALG----------SGI----------------------------- 42 (147)
Q Consensus 2 t~vvanfsa~~~~ELsl~kGq~VeVle~~~~~~~W~~~----------g~~----------------------------- 42 (147)
.+|..+|.|..++||+|.||..|.|+|++. .+||.+ +++
T Consensus 110 AvVKf~Y~a~~eDELsLtKGtrv~vmEKss--DGWWrG~~ng~VGWFPSNYv~E~~ds~~gd~~s~~~~~~~A~a~n~~~ 187 (379)
T KOG4226|consen 110 AVVKFNYVAEREDELSLTKGTRVTVMEKSS--DGWWRGSYNGQVGWFPSNYVTEEVDSAAGDSPSFLSLRKAASASNGQG 187 (379)
T ss_pred eEEEEeeccccccccccccCcEEEEEEecc--CcceecccCCeeccccccceehhccccccCCccceecchhhcccCCCC
Confidence 478999999999999999999999999983 445422 110
Q ss_pred ----eEEEEEeeeccCCCceeeeecCCEEEEEeCCCCCCCcEEEEecCCCCCeecccccceeecCCCCC-CccCCCCCcc
Q psy12864 43 ----EMTWVLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPTCVLKQPPPSV-LRTATSPSKR 117 (147)
Q Consensus 43 ----e~~~Vi~dF~Ar~~~ELSv~kGq~VEIlE~~~~~p~WwLvR~~~~~~gqeGlVP~n~L~~~~~~~-~~~~~~p~~~ 117 (147)
.+++++|.|++.+++||+|+|||++||||++++||+||.+|+. .||.||||.||+......+ ..-+-+|+.+
T Consensus 188 s~vl~vVvaLYsFsssndeELsFeKGerleivd~Pe~DPdWwkarn~---~G~vGLVPrNYv~vl~d~~~ts~~~~~s~~ 264 (379)
T KOG4226|consen 188 SRVLHVVVALYSFSSSNDEELSFEKGERLEIVDKPENDPDWWKARNA---RGQVGLVPRNYVVVLSDGPSTSKALHPSHA 264 (379)
T ss_pred ceEEEEEEEEecccCCChhhcccccCceeEeccCCCCCchHHhhccc---CCccceeecceEEEeccCccccccCCcccc
Confidence 4789999999999999999999999999999999999999986 7999999999997753332 2245666654
No 2
>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A ....
Probab=99.53 E-value=8.5e-15 Score=94.18 Aligned_cols=49 Identities=33% Similarity=0.508 Sum_probs=42.8
Q ss_pred EEeeeccCCCceeeeecCCEEEEEeCCCCCCCcEEEEecCCCCCeecccccceee
Q psy12864 47 VLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPTCVLK 101 (147)
Q Consensus 47 Vi~dF~Ar~~~ELSv~kGq~VEIlE~~~~~p~WwLvR~~~~~~gqeGlVP~n~L~ 101 (147)
|+|||.|++.+||+|++||.|.|++.. +.+||++++ .|+.|+||+||++
T Consensus 1 Al~~y~~~~~dELs~~~Gd~i~v~~~~--~~~W~~g~~----~g~~G~~P~~yV~ 49 (49)
T PF14604_consen 1 ALYDYEAQDPDELSFKKGDVITVLEKS--DDGWWYGRN----TGRTGLFPANYVE 49 (49)
T ss_dssp ESSCBCSSSTTB-EB-TTEEEEEEEES--STSEEEEEE----TTEEEEEEGGGEE
T ss_pred CCccCCCCCcCEeeEcCCCEEEEEEeC--CCCEEEEEE----CCEEEEECHHhCC
Confidence 689999999999999999999999874 569999997 4999999999985
No 3
>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....
Probab=99.45 E-value=7.8e-14 Score=88.25 Aligned_cols=48 Identities=38% Similarity=0.581 Sum_probs=42.6
Q ss_pred EEEeeeccCCCceeeeecCCEEEEEeCCCCCCCcEEEEecCCCCCeeccccc
Q psy12864 46 WVLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPT 97 (147)
Q Consensus 46 ~Vi~dF~Ar~~~ELSv~kGq~VEIlE~~~~~p~WwLvR~~~~~~gqeGlVP~ 97 (147)
+|+|||.|...+||+|++||.++|++...+ +||++|+. .++++||||+
T Consensus 1 ~Alydf~~~~~~eLs~~~Gd~i~v~~~~~~--~Ww~~~~~--~~~~~G~vP~ 48 (48)
T PF00018_consen 1 RALYDFDAEDPDELSFKKGDIIEVLEKSDD--GWWKVRNE--STGKEGWVPS 48 (48)
T ss_dssp EESSCBETSSTTBSEB-TTEEEEEEEESSS--SEEEEEET--TTTEEEEEEG
T ss_pred CCCeeeCCCCCCEEeEECCCEEEEEEecCC--CEEEEEEC--CCCcEEEeeC
Confidence 589999999999999999999999998743 99999997 3489999996
No 4
>KOG1029|consensus
Probab=99.42 E-value=1.2e-13 Score=130.29 Aligned_cols=93 Identities=28% Similarity=0.489 Sum_probs=76.9
Q ss_pred EEeeeccccccccceeeceEEEEeecCC--------------CCCCccc--------CC-cc------e--EEEEEeeec
Q psy12864 4 VLADYTAANTTELSVHKGQQVEVVHNSS--------------APPDWAL--------GS-GI------E--MTWVLADYT 52 (147)
Q Consensus 4 vvanfsa~~~~ELsl~kGq~VeVle~~~--------------~~~~W~~--------~g-~~------e--~~~Vi~dF~ 52 (147)
||++|.|+.+..|+|+.||+|.|.++.. ++-||+. +| +. . -++++|||.
T Consensus 984 Via~yvAs~peQLsla~GqlIlIrkKn~sGWWeGELqarGkkrq~GWFPa~yVKvL~~~s~raTPa~~~v~qviamYdY~ 1063 (1118)
T KOG1029|consen 984 VIADYVASGPEQLSLAPGQLILIRKKNASGWWEGELQARGKKRQIGWFPAEYVKVLEPGSGRATPATRPVCQVIAMYDYE 1063 (1118)
T ss_pred hhhhhhccCchhccccCccEEEEEecCCCccchhhHhhcCCccccccccHHHhhhccCCCCcCCCCCCccceeEEeeccc
Confidence 7999999999999999999999999872 1233432 11 10 1 357888999
Q ss_pred cCCCceeeeecCCEEEEEeCCCCCCCcEEEEecCCCCCeecccccceeec
Q psy12864 53 ATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPTCVLKQ 102 (147)
Q Consensus 53 Ar~~~ELSv~kGq~VEIlE~~~~~p~WwLvR~~~~~~gqeGlVP~n~L~~ 102 (147)
|.+.+||+|.|||.+-|+.+. +|+||.+..+ |+.||+|+||.-+
T Consensus 1064 AqndDELsF~kgdiI~Vlnkd--epeWW~Ge~n----g~sGLFPSNYV~k 1107 (1118)
T KOG1029|consen 1064 AQNDDELSFKKGDIINVLNKD--EPEWWSGERN----GKSGLFPSNYVQK 1107 (1118)
T ss_pred cCCcccccccCCCEEEecCCC--Chhhhccccc----CccccCccccccc
Confidence 999999999999999999884 6899999986 9999999999944
No 5
>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....
Probab=99.39 E-value=5.5e-13 Score=86.49 Aligned_cols=52 Identities=27% Similarity=0.468 Sum_probs=44.5
Q ss_pred EEEEeeeccCCCceeeeecCCEEEEE-eCCCCCCCcEEEEecCCCCCeecccccceeec
Q psy12864 45 TWVLADYTATNTTELSVHKGQQVEVV-HNSSAPPDWALVRLSLGEECSEGLVPTCVLKQ 102 (147)
Q Consensus 45 ~~Vi~dF~Ar~~~ELSv~kGq~VEIl-E~~~~~p~WwLvR~~~~~~gqeGlVP~n~L~~ 102 (147)
++|+.||.+.+.+||+|+|||.|+|+ +.. +.+||++++. |+.||||+++|++
T Consensus 2 ~~a~~d~~~~~~~~Ls~~~Gd~i~v~~~~~--~~~ww~~~~~----g~~G~~P~~~v~~ 54 (55)
T PF07653_consen 2 YRAIFDYVAEDPDELSFKKGDVIEVLGEKD--DDGWWLGENN----GRRGWFPSSYVEE 54 (55)
T ss_dssp EEESSSBESSSTTB-EB-TTEEEEEEEEEC--STSEEEEEET----TEEEEEEGGGEEE
T ss_pred EEEeEEECCCCCCceEEecCCEEEEEEeec--CCCEEEEEEC----CcEEEEcHHHEEE
Confidence 68999999999999999999999999 553 3499999984 9999999999975
No 6
>smart00326 SH3 Src homology 3 domains. Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.
Probab=99.32 E-value=3.7e-12 Score=79.03 Aligned_cols=54 Identities=35% Similarity=0.535 Sum_probs=48.8
Q ss_pred EEEEEeeeccCCCceeeeecCCEEEEEeCCCCCCCcEEEEecCCCCCeecccccceeec
Q psy12864 44 MTWVLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPTCVLKQ 102 (147)
Q Consensus 44 ~~~Vi~dF~Ar~~~ELSv~kGq~VEIlE~~~~~p~WwLvR~~~~~~gqeGlVP~n~L~~ 102 (147)
..+|++||.+..++||+|++||.|+|++.. +.+||.+++. .+++|+||++++..
T Consensus 4 ~~~a~~~~~~~~~~~l~~~~Gd~v~v~~~~--~~~w~~~~~~---~~~~G~vP~~~v~~ 57 (58)
T smart00326 4 QVRALYDYTAQDPDELSFKKGDIITVLEKS--DDGWWKGRLG---RGKEGLFPSNYVEE 57 (58)
T ss_pred EEEEeeeeCCCCCCCCCCCCCCEEEEEEcC--CCCeEEEEeC---CCCEEEEchHHEEE
Confidence 568999999999999999999999999996 5699999985 39999999999864
No 7
>cd00174 SH3 Src homology 3 domains; SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies.
Probab=99.31 E-value=3.7e-12 Score=78.39 Aligned_cols=52 Identities=35% Similarity=0.509 Sum_probs=46.3
Q ss_pred EEEEeeeccCCCceeeeecCCEEEEEeCCCCCCCcEEEEecCCCCCeecccccceee
Q psy12864 45 TWVLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPTCVLK 101 (147)
Q Consensus 45 ~~Vi~dF~Ar~~~ELSv~kGq~VEIlE~~~~~p~WwLvR~~~~~~gqeGlVP~n~L~ 101 (147)
+.|++||.+...+||+|++||.|.|++.. +.+||++++. .+++|+||++++.
T Consensus 2 ~~a~~~~~~~~~~~l~~~~Gd~v~v~~~~--~~~w~~~~~~---~~~~G~vP~~~v~ 53 (54)
T cd00174 2 VRALYDYDARDPDELSFKKGDIIEVLEKS--DDGWWEGRLL---GGKRGLFPSNYVE 53 (54)
T ss_pred EEEEEeeCCCCCCCCCCCCCCEEEEEEcC--CCCeEEEEEC---CCCEEEEccccCc
Confidence 57999999999999999999999999993 4599999986 2399999999985
No 8
>KOG3557|consensus
Probab=99.09 E-value=3.1e-11 Score=112.12 Aligned_cols=68 Identities=32% Similarity=0.501 Sum_probs=61.2
Q ss_pred EEEEEeeeccCCCceeeeecCCEEEEEeCCCCCCCcEEEEecCCCCCeecccccceeecCCCCCCccCCCCCcc
Q psy12864 44 MTWVLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPTCVLKQPPPSVLRTATSPSKR 117 (147)
Q Consensus 44 ~~~Vi~dF~Ar~~~ELSv~kGq~VEIlE~~~~~p~WwLvR~~~~~~gqeGlVP~n~L~~~~~~~~~~~~~p~~~ 117 (147)
...|.|||.|||+.||||.|||.+|||+... .||+||+- .|+.||||+|||.+.+..+.+..++|-..
T Consensus 502 ~~~~~Ydf~arNs~ELsV~k~E~LEvl~d~R---~WW~~kn~---~G~~GyvP~nIL~~~~~~~~~~srsp~~~ 569 (721)
T KOG3557|consen 502 WVLVLYDFQARNSSELSVKKGEVLEVLDDGR---KWWKVKNG---HGRAGYVPSNILAPLQPEHTGESRSPYGA 569 (721)
T ss_pred eeeeehhhhcccchhhhhhhhhhhhhhhccc---cceeccCc---cCCCCCcchhhhccCCCcccccccCcccc
Confidence 6789999999999999999999999999987 99999985 79999999999999888877777777654
No 9
>KOG4226|consensus
Probab=99.03 E-value=6.8e-10 Score=95.86 Aligned_cols=93 Identities=28% Similarity=0.378 Sum_probs=75.2
Q ss_pred eEEEeeeccccccccceeeceEEEEeecCCCCCCcccC-----------Ccc----------------------------
Q psy12864 2 TWVLADYTAANTTELSVHKGQQVEVVHNSSAPPDWALG-----------SGI---------------------------- 42 (147)
Q Consensus 2 t~vvanfsa~~~~ELsl~kGq~VeVle~~~~~~~W~~~-----------g~~---------------------------- 42 (147)
.|...||.|+++.||+++|-++.-+|..+ -+||.+ +++
T Consensus 7 vvak~dy~aq~~qeldikkner~~lldds---k~wwrvrns~n~tgyvpsnyverkn~~~~~si~knlkd~~g~kt~~k~ 83 (379)
T KOG4226|consen 7 VVAKWDYTAQQDQELDIKKNERLWLLDDS---KTWWRVRNSANRTGYVPSNYVERKNSLKKGSIVKNLKDTLGLKTRRKT 83 (379)
T ss_pred EEEEechhcccchhccccccceEEEEcCC---ccceeeecccccCCcccchhhhcccchhhhHHHHhhhhccccccccCC
Confidence 35667889999999999999999999965 234321 100
Q ss_pred -------------e-----------EEEEEeeeccCCCceeeeecCCEEEEEeCCCCCCCcEEEEecCCCCCeecccccc
Q psy12864 43 -------------E-----------MTWVLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPTC 98 (147)
Q Consensus 43 -------------e-----------~~~Vi~dF~Ar~~~ELSv~kGq~VEIlE~~~~~p~WwLvR~~~~~~gqeGlVP~n 98 (147)
+ -.+|-+.|.|+-++||++.||.+|.|+|++.+ |||.+..+ |+-|++|+|
T Consensus 84 s~~~~~~sp~~d~~~ppd~~~~~~t~AvVKf~Y~a~~eDELsLtKGtrv~vmEKssD--GWWrG~~n----g~VGWFPSN 157 (379)
T KOG4226|consen 84 SARDASPSPSTDAEYPPDRIYDLNTPAVVKFNYVAEREDELSLTKGTRVTVMEKSSD--GWWRGSYN----GQVGWFPSN 157 (379)
T ss_pred CccccCCCCCccccCCcchhhhcCCceEEEEeeccccccccccccCcEEEEEEeccC--cceecccC----Ceecccccc
Confidence 0 14778889999999999999999999999854 99999985 999999999
Q ss_pred eeecC
Q psy12864 99 VLKQP 103 (147)
Q Consensus 99 ~L~~~ 103 (147)
|..-.
T Consensus 158 Yv~E~ 162 (379)
T KOG4226|consen 158 YVTEE 162 (379)
T ss_pred ceehh
Confidence 98543
No 10
>KOG4348|consensus
Probab=99.02 E-value=4.3e-10 Score=101.73 Aligned_cols=71 Identities=17% Similarity=0.273 Sum_probs=60.4
Q ss_pred eEEEEEeeeccCCCceeeeecCCEEEEEeCCCCCCCcEEEEecCCCCCeecccccceeecCCCC----CCccCCCCCcc
Q psy12864 43 EMTWVLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPTCVLKQPPPS----VLRTATSPSKR 117 (147)
Q Consensus 43 e~~~Vi~dF~Ar~~~ELSv~kGq~VEIlE~~~~~p~WwLvR~~~~~~gqeGlVP~n~L~~~~~~----~~~~~~~p~~~ 117 (147)
|++.|+..|.+++.+||++..|+.|.+|.+.+++-|||-+..+ |++|++|-||.+..+.. +.+-+-+|++.
T Consensus 262 eycrv~F~Ye~qndDELt~KEgdil~lItK~cgdaGWweGELn----Gk~GvFPDNFv~lv~~~l~ke~~~pkkpppp~ 336 (627)
T KOG4348|consen 262 EYCRVKFVYEPQNDDELTLKEGDILILITKNCGDAGWWEGELN----GKKGVFPDNFVELVQVPLGKESGAPKKPPPPQ 336 (627)
T ss_pred hheeeeeeecCCCccceeeccccEEEEecccccccceeeeeec----CccccCCchhhhhcCCcccccCCCCCCCcCcc
Confidence 6889999999999999999999999999999999999999987 99999999999765422 33445555544
No 11
>KOG2199|consensus
Probab=98.77 E-value=1.9e-09 Score=96.24 Aligned_cols=55 Identities=25% Similarity=0.398 Sum_probs=49.8
Q ss_pred EEEEEeeeccCCCceeeeecCCEEEEEeCCCCCCCcEEEEecCCCCCeecccccceeecCC
Q psy12864 44 MTWVLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPTCVLKQPP 104 (147)
Q Consensus 44 ~~~Vi~dF~Ar~~~ELSv~kGq~VEIlE~~~~~p~WwLvR~~~~~~gqeGlVP~n~L~~~~ 104 (147)
-+.+||||+|..++||||.+||.+.|||.. ++.||.+++. +..|++|+||....-
T Consensus 217 kVRALYDFeAaE~nELsFkaGdIItVLd~s--~~~WWKG~~~----~~~GlFPsnfVT~~l 271 (462)
T KOG2199|consen 217 KVRALYDFEAAEDNELSFKAGDIITVLDDS--DPNWWKGENH----RGIGLFPSNFVTADL 271 (462)
T ss_pred hhhhhhcccccCCCccceecCcEEEEcccC--CcchhccccC----Ccccccchhhhhhhh
Confidence 468999999999999999999999999985 6899999986 789999999987654
No 12
>KOG0515|consensus
Probab=98.76 E-value=2.8e-09 Score=98.36 Aligned_cols=62 Identities=31% Similarity=0.487 Sum_probs=53.5
Q ss_pred EEEEEeeeccCCCceeeeecCCEEEEEeCC-CCCCCcEEEEecCCCCCeecccccceeecCCCCCCc
Q psy12864 44 MTWVLADYTATNTTELSVHKGQQVEVVHNS-SAPPDWALVRLSLGEECSEGLVPTCVLKQPPPSVLR 109 (147)
Q Consensus 44 ~~~Vi~dF~Ar~~~ELSv~kGq~VEIlE~~-~~~p~WwLvR~~~~~~gqeGlVP~n~L~~~~~~~~~ 109 (147)
++.+++||.|.+++||+|+.||-|.||++. +..-+||.+|++ |+|||||.|||..-|..-.|
T Consensus 685 ~vYAlwdYeaqf~DELsf~eGd~lTvirr~d~~eteWWwa~ln----g~eGyVPRnylgLyPriKpr 747 (752)
T KOG0515|consen 685 VVYALWDYEAQFEDELSFDEGDELTVIRRDDEVETEWWWARLN----GEEGYVPRNYLGLYPRIKPR 747 (752)
T ss_pred eeEEeecccccccccccccCCceeEEEecCCcchhhhhhHhhc----CcccccchhhhhcCccccch
Confidence 467889999999999999999999999995 555699999975 99999999999776665443
No 13
>KOG3875|consensus
Probab=98.76 E-value=7.8e-10 Score=96.20 Aligned_cols=67 Identities=25% Similarity=0.365 Sum_probs=55.8
Q ss_pred eEEEEEeeeccCCCceeeeecCCEEEEEeCC---CCCCCcEEEEecCCCCCeecccccceeecCCCCCCccCCCCC
Q psy12864 43 EMTWVLADYTATNTTELSVHKGQQVEVVHNS---SAPPDWALVRLSLGEECSEGLVPTCVLKQPPPSVLRTATSPS 115 (147)
Q Consensus 43 e~~~Vi~dF~Ar~~~ELSv~kGq~VEIlE~~---~~~p~WwLvR~~~~~~gqeGlVP~n~L~~~~~~~~~~~~~p~ 115 (147)
|+..++|||.|++..|||++|||.+-|+.+. ..+++||++|.. ..+..||||.||++..-- |.|||.
T Consensus 269 ~~arA~YdF~a~np~ElSlk~Gdml~ia~K~dq~~~~~~gW~lat~--dg~~tG~iP~NYvkIi~r----q~qsp~ 338 (362)
T KOG3875|consen 269 EFARALYDFVARNPVELSLKKGDMLAIASKEDQQGVRCEGWLLATR--DGGTTGLIPINYVKIIGR----QPQSPN 338 (362)
T ss_pred HHHHHHhhhhcCCHHHhhhhcCchhhcccccccCCCCCcceeeeec--cCCeeeeeehhhhhhhhc----CCCCCC
Confidence 6789999999999999999999999999765 455689999986 357899999999987533 555544
No 14
>KOG1029|consensus
Probab=98.74 E-value=5.3e-09 Score=99.45 Aligned_cols=93 Identities=24% Similarity=0.436 Sum_probs=78.9
Q ss_pred EEeeeccccccccceeeceEEEEeecCCCCCCccc----------C-------------Ccc------------------
Q psy12864 4 VLADYTAANTTELSVHKGQQVEVVHNSSAPPDWAL----------G-------------SGI------------------ 42 (147)
Q Consensus 4 vvanfsa~~~~ELsl~kGq~VeVle~~~~~~~W~~----------~-------------g~~------------------ 42 (147)
.++-|+|.+.+|+|...|++|-|-+...+.|||-- | ++-
T Consensus 698 Aly~FeaRs~dEisf~pGDII~V~esq~aEPGWlaGel~gktGWFPenyvEki~~~e~p~~v~Pv~~l~~~~~psas~nq 777 (1118)
T KOG1029|consen 698 ALYPFEARSHDEISFEPGDIIIVFESQAAEPGWLAGELRGKTGWFPENYVEKIPAVETPGGVPPVQNLPPTMTPSASVNQ 777 (1118)
T ss_pred eecccccCCcccccccCCCEEEEehhccCCcccccceeccccCcCcHHHHhhcccCCCCCCCCchhcCCCCCCccccccc
Confidence 46778999999999999999999999888888831 1 100
Q ss_pred --------------------------------e----EEEEEeeeccCCCceeeeecCCEEEEEeCCCCCCCcEEEEecC
Q psy12864 43 --------------------------------E----MTWVLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSL 86 (147)
Q Consensus 43 --------------------------------e----~~~Vi~dF~Ar~~~ELSv~kGq~VEIlE~~~~~p~WwLvR~~~ 86 (147)
| .++++|.|.|+.++.|+|.|||.++|||+.. .||.+...
T Consensus 778 ~a~~ad~~~~~~n~~~~t~~aA~p~~tapg~~eve~lq~iA~y~wrakke~dLsFskgd~I~Vlekqe---mwW~G~v~- 853 (1118)
T KOG1029|consen 778 IAVVADTKNESANAMGLTEGAAPPALTAPGQGEVEILQAIALYPWRAKKENDLSFSKGDTITVLEKQE---MWWFGEVA- 853 (1118)
T ss_pred ceeecccccchhhccCCCCCCCCccccCCCchhhhhhhHHhhccccccccccccccCCCeeeeehhcc---ceeccccc-
Confidence 2 4578889999999999999999999999987 89999664
Q ss_pred CCCCeecccccceeecC
Q psy12864 87 GEECSEGLVPTCVLKQP 103 (147)
Q Consensus 87 ~~~gqeGlVP~n~L~~~ 103 (147)
|+.|++|.||.+..
T Consensus 854 ---g~~GwFPksYVk~~ 867 (1118)
T KOG1029|consen 854 ---GEIGWFPKSYVKEV 867 (1118)
T ss_pred ---CccCcCcHHhhhhc
Confidence 99999999999843
No 15
>KOG4278|consensus
Probab=98.73 E-value=1.3e-08 Score=96.33 Aligned_cols=58 Identities=22% Similarity=0.407 Sum_probs=52.4
Q ss_pred EEEEEeeeccCCCceeeeecCCEEEEEeCCCCCCCcEEEEecCCCCCeecccccceeecCCCC
Q psy12864 44 MTWVLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPTCVLKQPPPS 106 (147)
Q Consensus 44 ~~~Vi~dF~Ar~~~ELSv~kGq~VEIlE~~~~~p~WwLvR~~~~~~gqeGlVP~n~L~~~~~~ 106 (147)
+.+++|||.|.+++.||++|||+|.||-.+. +.+||-+|.- +|| ||||+|||.|..+-
T Consensus 92 LFVALYDFvasGdntLSitKGeklRvLGYN~-NgEWcEartK---NGq-GWVPSNyItPvNSL 149 (1157)
T KOG4278|consen 92 LFVALYDFVASGDNTLSITKGEKLRVLGYNK-NGEWCEARTK---NGQ-GWVPSNYITPVNSL 149 (1157)
T ss_pred eeEeeeeeeccccceeeeecCceEEEeeecC-CCcceeeccc---CCC-ccccccccccccch
Confidence 7899999999999999999999999999873 6799999973 577 99999999988765
No 16
>KOG0162|consensus
Probab=98.57 E-value=3.1e-08 Score=94.11 Aligned_cols=54 Identities=30% Similarity=0.529 Sum_probs=48.6
Q ss_pred eEEEEEeeeccCCCceeeeecCCEEEEEeCCCCCCCcEEEEecCCCCCeecccccceeec
Q psy12864 43 EMTWVLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPTCVLKQ 102 (147)
Q Consensus 43 e~~~Vi~dF~Ar~~~ELSv~kGq~VEIlE~~~~~p~WwLvR~~~~~~gqeGlVP~n~L~~ 102 (147)
.++.++|||.+++.+||+|.||+.+||+.... .||||++.+ |+|||||.||.++
T Consensus 1052 p~~~A~Y~y~gq~~dEls~~~~diIei~~edp--SGWw~gk~~----~keG~~P~~Yv~~ 1105 (1106)
T KOG0162|consen 1052 PVCEALYDYPGQDVDELSFKKGDIIEIMREDP--SGWWLGKLN----GKEGLFPGNYVTE 1105 (1106)
T ss_pred cceeeeccCCCCCcccccccCCCEEEEeccCC--CcchhhccC----Ccccccccccccc
Confidence 48899999999999999999999999998752 399999975 9999999999864
No 17
>KOG4348|consensus
Probab=98.46 E-value=4.8e-08 Score=88.65 Aligned_cols=97 Identities=24% Similarity=0.432 Sum_probs=80.4
Q ss_pred EEEeeeccccccccceeeceEEEEeecCCCCCCcccCC----------c-------------------------------
Q psy12864 3 WVLADYTAANTTELSVHKGQQVEVVHNSSAPPDWALGS----------G------------------------------- 41 (147)
Q Consensus 3 ~vvanfsa~~~~ELsl~kGq~VeVle~~~~~~~W~~~g----------~------------------------------- 41 (147)
.|-+||.|..++||+++.|+++.=+.+. .-||+-+. +
T Consensus 5 ive~dy~a~hddelti~vgeii~nvkk~--e~gw~egelngrrg~fpdnfV~eik~e~k~d~l~nk~~r~~l~q~~s~n~ 82 (627)
T KOG4348|consen 5 IVEYDYDAVHDDELTIRVGEIIRNVKKL--EEGWLEGELNGRRGQFPDNFVVEIKVEFKDDDLVNKLSRDSLVQMTSRNP 82 (627)
T ss_pred eeecccccccCceeeEeHHHHHHhhhhh--ccceeeceeccccccCCchhhhhhhhhcccccccccccccchhhcccCCC
Confidence 5789999999999999999998887766 45665220 0
Q ss_pred -----------------ceEEEEEeeeccCCCceeeeecCCEEEEEeCCCCCCCcEEEEecCCCCCeecccccceeecCC
Q psy12864 42 -----------------IEMTWVLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPTCVLKQPP 104 (147)
Q Consensus 42 -----------------~e~~~Vi~dF~Ar~~~ELSv~kGq~VEIlE~~~~~p~WwLvR~~~~~~gqeGlVP~n~L~~~~ 104 (147)
.-.++|.+.|..++.+||.+.-|+.+||++.-+ .|||.+..+ |..|++|+||++-.+
T Consensus 83 l~~~q~v~rtn~~~q~~~r~c~v~f~Y~pqndDELelkVGDiIeli~eVE--eGWw~G~Ln----gk~GmFPsNFVkel~ 156 (627)
T KOG4348|consen 83 LTVHQQVERTNPPPQPQARICVVTFAYSPQNDDELELKVGDIIELISEVE--EGWWKGKLN----GKVGMFPSNFVKELP 156 (627)
T ss_pred ccccCcccccCCCCCccceeEEEEEeecCCCCceeeeeeccHHHhhhHhh--hhhhhceec----CcccccchhhceecC
Confidence 036899999999999999999999999998753 499999986 999999999998765
Q ss_pred CCC
Q psy12864 105 PSV 107 (147)
Q Consensus 105 ~~~ 107 (147)
..+
T Consensus 157 ~~s 159 (627)
T KOG4348|consen 157 TPS 159 (627)
T ss_pred CCC
Confidence 543
No 18
>KOG2996|consensus
Probab=98.36 E-value=5.1e-07 Score=84.43 Aligned_cols=68 Identities=18% Similarity=0.276 Sum_probs=55.9
Q ss_pred CCcccCCcceEEEEE--eeeccCCCceeeeecCCEEEEEeCCCCCCCcEEEEecCCCCCeecccccceeecCCC
Q psy12864 34 PDWALGSGIEMTWVL--ADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPTCVLKQPPP 105 (147)
Q Consensus 34 ~~W~~~g~~e~~~Vi--~dF~Ar~~~ELSv~kGq~VEIlE~~~~~p~WwLvR~~~~~~gqeGlVP~n~L~~~~~ 105 (147)
++|...+.+=+..++ |||-||+-.|||+.+|+.|.|+++-.++.|||.+..+ |+-||+|++|.++...
T Consensus 795 ~~~sv~s~~~~g~AvarYdf~ard~~eLSlk~GDvV~i~~k~g~d~GWWkGevn----grvGwFPstYVee~~~ 864 (865)
T KOG2996|consen 795 AGNSVLSPKVVGTAVARYDFCARDMRELSLKEGDVVKIYDKVGEDQGWWKGEVN----GRVGWFPSTYVEEDDP 864 (865)
T ss_pred ccccccCcceeeeeeeccccCCCchhhcccccCCEEEEehhccccCceecceec----CcccccccccccccCC
Confidence 556544444444455 4778999999999999999999999889999999987 9999999999987643
No 19
>KOG4792|consensus
Probab=98.27 E-value=2.2e-07 Score=78.68 Aligned_cols=56 Identities=21% Similarity=0.423 Sum_probs=49.6
Q ss_pred eEEEEEeeeccCCCceeeeecCCEEEEEeCCCCCCCcEEEEecCCCCCeecccccceeecC
Q psy12864 43 EMTWVLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPTCVLKQP 103 (147)
Q Consensus 43 e~~~Vi~dF~Ar~~~ELSv~kGq~VEIlE~~~~~p~WwLvR~~~~~~gqeGlVP~n~L~~~ 103 (147)
|++-+++||....++.|-|+|||+++|+++++ .+||-+|+. .|+.|+||.+|+++-
T Consensus 125 ~~vr~~fdF~G~deeDLPFkkGeiL~I~~K~e--eqWW~Arns---~Gk~GmIPvpYVe~~ 180 (293)
T KOG4792|consen 125 EYVRALFDFNGNDEEDLPFKKGEILRIRDKPE--EQWWNARNS---EGKRGMIPVPYVEKY 180 (293)
T ss_pred hheeeeeccCCCccccCCcccCcEEEEecCcH--HHhhhhhcc---CCcccceechHHHhh
Confidence 34556999999999999999999999999985 499999985 699999999999764
No 20
>KOG2856|consensus
Probab=98.26 E-value=2e-07 Score=83.04 Aligned_cols=53 Identities=26% Similarity=0.451 Sum_probs=48.0
Q ss_pred EEEEeeeccCCCceeeeecCCEEEEEeCCCCCCCcEEEEecCCCCCeecccccceee
Q psy12864 45 TWVLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPTCVLK 101 (147)
Q Consensus 45 ~~Vi~dF~Ar~~~ELSv~kGq~VEIlE~~~~~p~WwLvR~~~~~~gqeGlVP~n~L~ 101 (147)
+.|||||.....+||+|++|+.++.++.. +..|||.+|.. .|+-||.|+||.+
T Consensus 417 vraLYDY~gqE~DElsfkaGd~l~kl~ee-DeqGWC~Grl~---~G~vGLyPAnYVe 469 (472)
T KOG2856|consen 417 VRALYDYAGQEGDELSFKAGDELEKLEEE-DEQGWCKGRLD---SGRVGLYPANYVE 469 (472)
T ss_pred EEeeeccCcccccchhhccccHhhhcCCc-ccccccccccc---CCcccccchhhhh
Confidence 57999999999999999999999999986 34599999985 6999999999975
No 21
>KOG4225|consensus
Probab=98.18 E-value=2.7e-06 Score=76.92 Aligned_cols=56 Identities=21% Similarity=0.375 Sum_probs=50.6
Q ss_pred EEEEEeeeccCCCceeeeecCCEEEEEeCCCCCCCcEEEEecCCCCCeecccccceeecCCC
Q psy12864 44 MTWVLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPTCVLKQPPP 105 (147)
Q Consensus 44 ~~~Vi~dF~Ar~~~ELSv~kGq~VEIlE~~~~~p~WwLvR~~~~~~gqeGlVP~n~L~~~~~ 105 (147)
.-.|+++|.|+...||+|.||+.|-|+.+ .|.-|+-+.++ |+-|+||+||+++.+-
T Consensus 232 ~aralf~F~~qt~kEL~~~kGDIVyI~rk--vD~nWyeGEhh----Gr~GifP~sYvE~~~~ 287 (489)
T KOG4225|consen 232 AARALFDFEAQTPKELPFNKGDIVYILRK--VDQNWYEGEHH----GRVGIFPASYVEILTP 287 (489)
T ss_pred hhhheeccccCCccccccCCCCEEEEEee--ccCceeeeeec----ceecceechheeecCc
Confidence 34789999999999999999999999988 56689999997 9999999999988755
No 22
>KOG4225|consensus
Probab=98.14 E-value=4.5e-06 Score=75.54 Aligned_cols=99 Identities=19% Similarity=0.333 Sum_probs=78.2
Q ss_pred EEeeeccccccccceeeceEEEEeecC---------CCCCCccc--------C------Cc------ceE--EEEEeeec
Q psy12864 4 VLADYTAANTTELSVHKGQQVEVVHNS---------SAPPDWAL--------G------SG------IEM--TWVLADYT 52 (147)
Q Consensus 4 vvanfsa~~~~ELsl~kGq~VeVle~~---------~~~~~W~~--------~------g~------~e~--~~Vi~dF~ 52 (147)
++.||.++...||++.||++|.|+.+- ++..|+.. + .- .|. .++.|+|.
T Consensus 235 alf~F~~qt~kEL~~~kGDIVyI~rkvD~nWyeGEhhGr~GifP~sYvE~~~~~e~~qP~~~~P~q~~~~g~a~A~y~F~ 314 (489)
T KOG4225|consen 235 ALFDFEAQTPKELPFNKGDIVYILRKVDQNWYEGEHHGRVGIFPASYVEILTPREKAQPARPPPQQVLEQGEAIAKYNFN 314 (489)
T ss_pred heeccccCCccccccCCCCEEEEEeeccCceeeeeecceecceechheeecCcccccCcCCCCcccccccccccccCCCC
Confidence 678999999999999999999999853 33333321 0 00 022 57899999
Q ss_pred cCCCceeeeecCCEEEEEeCCCCCCCcEEEEecCCCCCeecccccceeecCCCC
Q psy12864 53 ATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPTCVLKQPPPS 106 (147)
Q Consensus 53 Ar~~~ELSv~kGq~VEIlE~~~~~p~WwLvR~~~~~~gqeGlVP~n~L~~~~~~ 106 (147)
|....||+++||+.|.++-. -+.-|+-.++. ..+..|.+|.+|++...+.
T Consensus 315 ~~s~~Els~~kge~v~L~r~--vd~nw~eG~i~--g~~rqgifP~SyVev~~~~ 364 (489)
T KOG4225|consen 315 ADSPVELSLRKGERVTLTRQ--VDENWYEGKIP--GTNRQGIFPASYVEVIKSP 364 (489)
T ss_pred CCCchhcccccCceEEEEEe--ccCceeecccc--ccccccccchhHhhhhhcc
Confidence 99999999999999999874 45689999986 5789999999999765443
No 23
>KOG0197|consensus
Probab=98.11 E-value=1.2e-06 Score=79.53 Aligned_cols=57 Identities=23% Similarity=0.410 Sum_probs=50.0
Q ss_pred eEEEEEeeeccCCCceeeeecCCE-EEEEeCCCCCCCcEEEEecCCCCCeecccccceeecC
Q psy12864 43 EMTWVLADYTATNTTELSVHKGQQ-VEVVHNSSAPPDWALVRLSLGEECSEGLVPTCVLKQP 103 (147)
Q Consensus 43 e~~~Vi~dF~Ar~~~ELSv~kGq~-VEIlE~~~~~p~WwLvR~~~~~~gqeGlVP~n~L~~~ 103 (147)
.+++++|||.++..++|+|.+|+. ..|++.. +++||.+|+. ..+++||||+||+...
T Consensus 12 ~~~valyd~~s~~~~dLsf~~Gd~~~~~~~~~--~~~Ww~ar~~--~~~~~g~ip~N~v~~~ 69 (468)
T KOG0197|consen 12 TIVVALYDYASRTPEDLSFRKGDVVLILLETT--NGDWWRARSL--QLGQEGYIPSNYVARN 69 (468)
T ss_pred ceEEEeccccCCCccccccccCceEEEeeccC--ChhHHHHHHh--hcCCCCcCcCceeecc
Confidence 378899999999999999999999 6777664 5699999986 4799999999999875
No 24
>KOG1118|consensus
Probab=98.06 E-value=1.6e-06 Score=75.74 Aligned_cols=55 Identities=16% Similarity=0.296 Sum_probs=50.0
Q ss_pred eEEEEEeeeccCCCceeeeecCCEEEEEeCCCCCCCcEEEEecCCCCCeecccccceeecC
Q psy12864 43 EMTWVLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPTCVLKQP 103 (147)
Q Consensus 43 e~~~Vi~dF~Ar~~~ELSv~kGq~VEIlE~~~~~p~WwLvR~~~~~~gqeGlVP~n~L~~~ 103 (147)
-++.++|||++++++||-|.+|+.+++++.- +++||-++.+ |+.|++|.||..+.
T Consensus 307 p~cralYdFepenEgEL~fkeGDlI~l~~QI--denWyeG~~~----g~sG~FPvnYv~vl 361 (366)
T KOG1118|consen 307 PCCRALYDFEPENEGELDFKEGDLITLTNQI--DENWYEGEKH----GESGMFPVNYVEVL 361 (366)
T ss_pred hhheeeeccCCCCCCccCcccCceeeehhhc--Ccchhhheec----CccCccccceeEEe
Confidence 3678999999999999999999999999884 5799999987 89999999998764
No 25
>KOG2070|consensus
Probab=97.98 E-value=1.1e-05 Score=74.28 Aligned_cols=55 Identities=20% Similarity=0.311 Sum_probs=47.5
Q ss_pred cceEEEEEeeeccCCCceeeeecCCEEEEEeCCCCCCCcEEEEecCCCCCeecccccceee
Q psy12864 41 GIEMTWVLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPTCVLK 101 (147)
Q Consensus 41 ~~e~~~Vi~dF~Ar~~~ELSv~kGq~VEIlE~~~~~p~WwLvR~~~~~~gqeGlVP~n~L~ 101 (147)
+.-++.+-+.|...|++||+|.|||.+.|-...+ .|||-+-.+ |..||+|+||..
T Consensus 16 ~pLvvrAkf~F~gsNnDELsf~KgDvItVTq~ee--GGWWEGTln----g~TGWFPsnYV~ 70 (661)
T KOG2070|consen 16 NPLVVRAKFNFQGSNNDELSFSKGDVITVTQVEE--GGWWEGTLN----GRTGWFPSNYVR 70 (661)
T ss_pred CceEEEEEeecccCCCceeccccCCEEEEEEecc--Ccceecccc----CccCccchHHHH
Confidence 3346677778899999999999999999998865 499999886 999999999984
No 26
>KOG1843|consensus
Probab=97.45 E-value=6.9e-05 Score=67.66 Aligned_cols=55 Identities=22% Similarity=0.401 Sum_probs=50.7
Q ss_pred EEEEEeeeccCCCceeeeecCCEEEEEeCCCCCCCcEEEEecCCCCCeecccccceeec
Q psy12864 44 MTWVLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPTCVLKQ 102 (147)
Q Consensus 44 ~~~Vi~dF~Ar~~~ELSv~kGq~VEIlE~~~~~p~WwLvR~~~~~~gqeGlVP~n~L~~ 102 (147)
...++|+|..+-...|+|+|||.+.||+++..-.+||-+|.. +.||++|+||.++
T Consensus 418 ~a~a~ysfage~~GDl~f~kgDii~il~ks~s~~dwwtgr~~----~~egifPanyv~~ 472 (473)
T KOG1843|consen 418 IATALYSFAGEQPGDLSFQKGDIITILKKSDSANDWWTGRGN----GYEGIFPANYVSL 472 (473)
T ss_pred eeeeeehhccCCCCCcccccCceEEEecCCcchhhHHHhhcc----ccccccccceecc
Confidence 567899999999999999999999999999777899999975 9999999999865
No 27
>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....
Probab=97.37 E-value=0.00012 Score=45.96 Aligned_cols=35 Identities=34% Similarity=0.524 Sum_probs=30.2
Q ss_pred EEEeeeccccccccceeeceEEEEeecCCCCCCcccC
Q psy12864 3 WVLADYTAANTTELSVHKGQQVEVVHNSSAPPDWALG 39 (147)
Q Consensus 3 ~vvanfsa~~~~ELsl~kGq~VeVle~~~~~~~W~~~ 39 (147)
.+++||.+..++||++++|+.+.|+++..+ +|+.+
T Consensus 1 ~Alydf~~~~~~eLs~~~Gd~i~v~~~~~~--~Ww~~ 35 (48)
T PF00018_consen 1 RALYDFDAEDPDELSFKKGDIIEVLEKSDD--GWWKV 35 (48)
T ss_dssp EESSCBETSSTTBSEB-TTEEEEEEEESSS--SEEEE
T ss_pred CCCeeeCCCCCCEEeEECCCEEEEEEecCC--CEEEE
Confidence 478999999999999999999999999854 88765
No 28
>PF08239 SH3_3: Bacterial SH3 domain; InterPro: IPR013247 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. A homologue of the SH3 domain has been found in a number of different bacterial proteins including glycyl-glycine endopeptidase, bacteriocin and some hypothetical proteins.; PDB: 3PVQ_B 3NPF_B 3H41_A 2KQ8_A 2KRS_A 2KYB_A 2KT8_A.
Probab=97.34 E-value=0.00037 Score=44.19 Aligned_cols=39 Identities=28% Similarity=0.430 Sum_probs=31.4
Q ss_pred eeeecCCEEEEEeCCCCCCCcEEEEecCCCCCeecccccceee
Q psy12864 59 LSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPTCVLK 101 (147)
Q Consensus 59 LSv~kGq~VEIlE~~~~~p~WwLvR~~~~~~gqeGlVP~n~L~ 101 (147)
-.+.+|+.|+|++...+. +|+.|+.. .+++|||++++|+
T Consensus 17 ~~l~~g~~v~v~~~~~~~-~W~~V~~~---~g~~GwV~~~~l~ 55 (55)
T PF08239_consen 17 GQLPKGEKVTVLGESGDG-NWYKVRTY---DGKTGWVSSSYLS 55 (55)
T ss_dssp EEEETTSEEEEEEEETT---EEEEEEE---TTEEEEEEGGCEE
T ss_pred EEEeCCCEEEEEEEcCCc-EEEEEECc---CCcEEEEEccccC
Confidence 357899999999988532 29999775 5889999999985
No 29
>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A ....
Probab=97.23 E-value=0.00019 Score=45.83 Aligned_cols=34 Identities=38% Similarity=0.647 Sum_probs=28.2
Q ss_pred EEeeeccccccccceeeceEEEEeecCCCCCCcccC
Q psy12864 4 VLADYTAANTTELSVHKGQQVEVVHNSSAPPDWALG 39 (147)
Q Consensus 4 vvanfsa~~~~ELsl~kGq~VeVle~~~~~~~W~~~ 39 (147)
+++||.+.+++||++++|++|.|+++. ..+|+.+
T Consensus 1 Al~~y~~~~~dELs~~~Gd~i~v~~~~--~~~W~~g 34 (49)
T PF14604_consen 1 ALYDYEAQDPDELSFKKGDVITVLEKS--DDGWWYG 34 (49)
T ss_dssp ESSCBCSSSTTB-EB-TTEEEEEEEES--STSEEEE
T ss_pred CCccCCCCCcCEeeEcCCCEEEEEEeC--CCCEEEE
Confidence 578999999999999999999999884 6888764
No 30
>KOG3655|consensus
Probab=97.22 E-value=0.00012 Score=66.77 Aligned_cols=53 Identities=21% Similarity=0.330 Sum_probs=47.4
Q ss_pred EEEeeeccCCCceeeeecCCEEEEEeCCCCCCCcEEEEecCCCCCeecccccceeecC
Q psy12864 46 WVLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPTCVLKQP 103 (147)
Q Consensus 46 ~Vi~dF~Ar~~~ELSv~kGq~VEIlE~~~~~p~WwLvR~~~~~~gqeGlVP~n~L~~~ 103 (147)
.++|||+|-...||+|..++.+.+|+.- +.|||+.+.. .|+-||||+||.+..
T Consensus 431 ~A~~dyqAAddtEisf~p~d~it~Id~v--degww~g~~p---dG~~glfPaNyV~li 483 (484)
T KOG3655|consen 431 RALYDYQAADDTEISFDPPDAITLIDQV--DEGWWTGQGP---DGEVGLFPANYVELI 483 (484)
T ss_pred cccccccccCCcccccCCcccccccccc--CCccccccCC---CCCcCcccccccccC
Confidence 5889999999999999999999999985 4699999985 689999999998653
No 31
>KOG3601|consensus
Probab=97.20 E-value=4.9e-05 Score=63.35 Aligned_cols=52 Identities=23% Similarity=0.425 Sum_probs=45.1
Q ss_pred EEEeeeccCCCceeeeecCCEEEEEeCCCCCCCcEEEEecCCCCCeecccccceeec
Q psy12864 46 WVLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPTCVLKQ 102 (147)
Q Consensus 46 ~Vi~dF~Ar~~~ELSv~kGq~VEIlE~~~~~p~WwLvR~~~~~~gqeGlVP~n~L~~ 102 (147)
++++||.|...+||+|.||+.|.|++.. ++.-|++.... |.+|++|.|++..
T Consensus 4 ~a~n~f~a~i~dELsFlkg~~lk~l~~~-d~~nw~~ael~----g~~g~~P~Nai~~ 55 (222)
T KOG3601|consen 4 VAKNDFLAGIRDELSFLKGDNLKILNME-DDINWYKAELD----GPEGFIPKNAIRM 55 (222)
T ss_pred hhhhhhhhcCcccceeecCCceEecchH-HhhhhhhHhhc----CccccCccccccc
Confidence 3678999999999999999999999987 34569999874 9999999999943
No 32
>KOG2546|consensus
Probab=97.17 E-value=0.00011 Score=66.51 Aligned_cols=64 Identities=27% Similarity=0.372 Sum_probs=53.2
Q ss_pred CCcccCCcceEEEEEeeeccCCCceeeeecCCEEEEEeCCCCCCCcEEEEecCCCCCeecccccceeecC
Q psy12864 34 PDWALGSGIEMTWVLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPTCVLKQP 103 (147)
Q Consensus 34 ~~W~~~g~~e~~~Vi~dF~Ar~~~ELSv~kGq~VEIlE~~~~~p~WwLvR~~~~~~gqeGlVP~n~L~~~ 103 (147)
++|..-+=.|.+++||||+|.-.+||+|..|..+-|+.+ +|.+||-+... |-.||+|.||.++.
T Consensus 415 p~w~p~syLEkVv~iydy~~~KddeLsf~E~ailyv~kk--nddgw~EgV~~----~VTglFpgnyve~~ 478 (483)
T KOG2546|consen 415 PAWVPTSYLEKVVAIYDYTADKDDELSFAEGAILYVLKK--NDDGWYEGVQD----GVTGLFPGNYVEPL 478 (483)
T ss_pred cccccHHHHHHHHhhcccccccccccccccccEEEEEEe--cCCcchhheec----CcceeccCcccccc
Confidence 444333334889999999999999999999999999999 45699988764 77999999998764
No 33
>KOG3601|consensus
Probab=96.95 E-value=0.00031 Score=58.59 Aligned_cols=54 Identities=22% Similarity=0.401 Sum_probs=48.9
Q ss_pred EEEEeeeccCCCceeeeecCCEEEEEeCCCCCCCcEEEEecCCCCCeecccccceeecCC
Q psy12864 45 TWVLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPTCVLKQPP 104 (147)
Q Consensus 45 ~~Vi~dF~Ar~~~ELSv~kGq~VEIlE~~~~~p~WwLvR~~~~~~gqeGlVP~n~L~~~~ 104 (147)
.++++||.+....||.++.||+++|++.+ ++-||.++.+ |+.|++|++|.++.+
T Consensus 166 qQa~~df~~~pp~ql~f~~gq~~~v~~~s--s~~ww~Gs~l----g~agiFpagyv~p~d 219 (222)
T KOG3601|consen 166 QQALYDFQPQPPGQLAFRRGQQIQVLDSS--SPFWWFGSKL----GRAGIFPAGYVAPSD 219 (222)
T ss_pred hhhcCCCCCCCchhhccccCCcceeecCC--Ccchhhcccc----CceeeecCccccccc
Confidence 47888999999999999999999999995 5799999987 999999999988764
No 34
>PRK10884 SH3 domain-containing protein; Provisional
Probab=96.89 E-value=0.0011 Score=54.46 Aligned_cols=43 Identities=19% Similarity=0.375 Sum_probs=35.9
Q ss_pred eeecCCEEEEEeCCCCCCCcEEEEecCCCCCeecccccceeecCCCC
Q psy12864 60 SVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPTCVLKQPPPS 106 (147)
Q Consensus 60 Sv~kGq~VEIlE~~~~~p~WwLvR~~~~~~gqeGlVP~n~L~~~~~~ 106 (147)
++.+|+.|+||+... +.+|+.||.. .|.+|||++++|...|+.
T Consensus 49 ~l~~G~~v~vl~~~~-~~~w~~Vr~~---~G~~GWV~~~~Ls~~p~~ 91 (206)
T PRK10884 49 TLNAGEEVTLLQVNA-NTNYAQIRDS---KGRTAWIPLKQLSTTPSL 91 (206)
T ss_pred EEcCCCEEEEEEEcC-CCCEEEEEeC---CCCEEeEEHHHhcCCccH
Confidence 578999999999762 3589999985 589999999999776664
No 35
>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....
Probab=96.81 E-value=0.00083 Score=43.19 Aligned_cols=35 Identities=37% Similarity=0.661 Sum_probs=27.2
Q ss_pred EEEeeeccccccccceeeceEEEEe-ecCCCCCCcccC
Q psy12864 3 WVLADYTAANTTELSVHKGQQVEVV-HNSSAPPDWALG 39 (147)
Q Consensus 3 ~vvanfsa~~~~ELsl~kGq~VeVl-e~~~~~~~W~~~ 39 (147)
.++.||.+....+|++++||+|+|+ ++. .++|+.+
T Consensus 3 ~a~~d~~~~~~~~Ls~~~Gd~i~v~~~~~--~~~ww~~ 38 (55)
T PF07653_consen 3 RAIFDYVAEDPDELSFKKGDVIEVLGEKD--DDGWWLG 38 (55)
T ss_dssp EESSSBESSSTTB-EB-TTEEEEEEEEEC--STSEEEE
T ss_pred EEeEEECCCCCCceEEecCCEEEEEEeec--CCCEEEE
Confidence 5889999999999999999999999 554 3477654
No 36
>KOG1264|consensus
Probab=96.77 E-value=0.0006 Score=66.34 Aligned_cols=54 Identities=22% Similarity=0.275 Sum_probs=46.9
Q ss_pred EEEEeeeccCCCceeeeecCCEEEEEeCCCCCCCcEEEEecCCCCCeecccccceeecC
Q psy12864 45 TWVLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPTCVLKQP 103 (147)
Q Consensus 45 ~~Vi~dF~Ar~~~ELSv~kGq~VEIlE~~~~~p~WwLvR~~~~~~gqeGlVP~n~L~~~ 103 (147)
+-+++||.|.-++||||-||..+..|++.+ .+||.+++. .-..+++|+||.+-.
T Consensus 777 ~kAL~~Yka~r~DELSFpk~aiItnv~kee--g~wWrGdYG---g~iq~wfPsnyVeei 830 (1267)
T KOG1264|consen 777 VKALYDYKAKRSDELSFPKGAIITNVSKEE--GGWWRGDYG---GRIQQWFPSNYVEEI 830 (1267)
T ss_pred hhhhhccccCCcccccccccceeEeeeccC--Cceeecccc---cceeeeccHHHhhhh
Confidence 458899999999999999999999999975 389999984 346999999998654
No 37
>smart00287 SH3b Bacterial SH3 domain homologues.
Probab=96.68 E-value=0.0033 Score=40.50 Aligned_cols=37 Identities=30% Similarity=0.598 Sum_probs=30.5
Q ss_pred eeecCCEEEEEeCCCCCCCcEEEEecCCCCCeecccccceee
Q psy12864 60 SVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPTCVLK 101 (147)
Q Consensus 60 Sv~kGq~VEIlE~~~~~p~WwLvR~~~~~~gqeGlVP~n~L~ 101 (147)
.+.+|++|+|++...+ +|+.++.. .|++||||..++.
T Consensus 26 ~l~~g~~v~i~~~~~~--~W~~v~~~---~g~~Gwi~~~~~~ 62 (63)
T smart00287 26 TLKKGDKVKVLGVDGQ--DWAKITYG---SGQRGYVPGYVVN 62 (63)
T ss_pred EecCCCEEEEEEccCC--ceEEEEcC---CCCEEEEEeeeec
Confidence 3789999999997532 89999974 5899999988764
No 38
>PF14603 hSH3: Helically-extended SH3 domain; PDB: 1RI9_A.
Probab=96.58 E-value=0.0022 Score=46.94 Aligned_cols=47 Identities=23% Similarity=0.230 Sum_probs=30.6
Q ss_pred CCCceeeeecCCEEEEEeCCCCCCCcEEEEecCCCCCeecccccceeecCCC
Q psy12864 54 TNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPTCVLKQPPP 105 (147)
Q Consensus 54 r~~~ELSv~kGq~VEIlE~~~~~p~WwLvR~~~~~~gqeGlVP~n~L~~~~~ 105 (147)
.+...|.+++||.||||+... ..=||+||. .|+-||||.++|.+.+.
T Consensus 28 ~G~kDLpi~~GE~LeVI~~t~--~~kvlCRN~---~GKYGYV~~~~L~~~d~ 74 (89)
T PF14603_consen 28 WGGKDLPIKPGEILEVIQFTD--DNKVLCRNS---EGKYGYVLRSHLLPLDG 74 (89)
T ss_dssp --TTB----TT-B-EEEEESS--SSEEEEEET---TTEEEEEEGGGS-----
T ss_pred CCcccCCcCCCCEEEEEEeCC--CCeEEEeCC---CCceeEEEHHHccCCCC
Confidence 378899999999999999763 588999996 69999999999977654
No 39
>KOG3771|consensus
Probab=96.51 E-value=0.0012 Score=60.12 Aligned_cols=57 Identities=28% Similarity=0.288 Sum_probs=44.3
Q ss_pred ceEEEEEeeeccCCCceeeeecCCEEEEEeCCCCCCCcEEEEecCC-CCCeecccccce
Q psy12864 42 IEMTWVLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLG-EECSEGLVPTCV 99 (147)
Q Consensus 42 ~e~~~Vi~dF~Ar~~~ELSv~kGq~VEIlE~~~~~p~WwLvR~~~~-~~gqeGlVP~n~ 99 (147)
-+.+.++|||.|...+||+|+.|++|+||+.+ +..+||-++.... ..+-.||||.|.
T Consensus 400 ~~~v~a~~dy~a~~~deLsf~~gd~i~vi~s~-~~~e~~eg~~mg~ke~~~~~~~~~~~ 457 (460)
T KOG3771|consen 400 LYKVKALHDYAAQDTDELSFEAGDVILVIPSD-NPEEQDEGWLMGVKESDWNGLFPLNF 457 (460)
T ss_pred ccceeccccccccccccccccCCCEEEEecCC-CccchhhHHHhhhcccccccceeccc
Confidence 36788999999999999999999999999954 4458888877522 222367787765
No 40
>cd00174 SH3 Src homology 3 domains; SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies.
Probab=96.45 E-value=0.0045 Score=37.39 Aligned_cols=36 Identities=39% Similarity=0.599 Sum_probs=30.9
Q ss_pred eEEEeeeccccccccceeeceEEEEeecCCCCCCcccC
Q psy12864 2 TWVLADYTAANTTELSVHKGQQVEVVHNSSAPPDWALG 39 (147)
Q Consensus 2 t~vvanfsa~~~~ELsl~kGq~VeVle~~~~~~~W~~~ 39 (147)
..++.||.+..+.+|++++|+.|.|++.. ..+|+.+
T Consensus 2 ~~a~~~~~~~~~~~l~~~~Gd~v~v~~~~--~~~w~~~ 37 (54)
T cd00174 2 VRALYDYDARDPDELSFKKGDIIEVLEKS--DDGWWEG 37 (54)
T ss_pred EEEEEeeCCCCCCCCCCCCCCEEEEEEcC--CCCeEEE
Confidence 46899999999999999999999999983 4677654
No 41
>KOG2528|consensus
Probab=96.38 E-value=0.003 Score=57.73 Aligned_cols=55 Identities=18% Similarity=0.356 Sum_probs=48.3
Q ss_pred EEEeeeccCCCceeeeecCCEEEEEeCCCCCCCcEEEEecCCCCCeecccccceeecCC
Q psy12864 46 WVLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPTCVLKQPP 104 (147)
Q Consensus 46 ~Vi~dF~Ar~~~ELSv~kGq~VEIlE~~~~~p~WwLvR~~~~~~gqeGlVP~n~L~~~~ 104 (147)
.++|||.+.+..||++..|+.+.|.... .-.+||-.+|. .|.+||+|++|.+...
T Consensus 6 RamyDf~~E~~sElsi~~~evl~i~~e~-~~~GwLeg~Ns---rge~GlfPa~yVeV~~ 60 (490)
T KOG2528|consen 6 RAMYDFQSEGHSELSIWEGEVLSITSED-VIEGWLEGSNS---RGERGLFPASYVEVTR 60 (490)
T ss_pred hhhcchhhcccccccccccceeeecCcc-cccccccCCCc---cCccCCCcccceeeec
Confidence 4889999999999999999999999876 34599999975 8999999999997765
No 42
>KOG1702|consensus
Probab=96.31 E-value=0.0046 Score=52.15 Aligned_cols=55 Identities=18% Similarity=0.335 Sum_probs=43.4
Q ss_pred eEEEEEeeeccCCCceeeeecCCEEEEEeCCCCCCCcEEEEecCCCCCeecccccceee
Q psy12864 43 EMTWVLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPTCVLK 101 (147)
Q Consensus 43 e~~~Vi~dF~Ar~~~ELSv~kGq~VEIlE~~~~~p~WwLvR~~~~~~gqeGlVP~n~L~ 101 (147)
-.+.++|||.|...+|++|.-|+.+--+..- +-||-..-.. .+|..|..|+||++
T Consensus 208 ktyra~ydysaqdedevsF~dgd~ivnvq~i--ddGWmygtv~--rtg~tGmlpaNyie 262 (264)
T KOG1702|consen 208 KTYRAFYDYSAQDEDEVSFVDGDYIVNVQSI--DDGWMYGTVV--RTGWTGMLPANYIE 262 (264)
T ss_pred ccchhhccCcccCcceeEEecCCeEEEEEec--cCCceeeEEE--eccccCCCchhhee
Confidence 3678999999999999999999987666543 2377644433 46899999999996
No 43
>KOG3523|consensus
Probab=96.26 E-value=0.0012 Score=62.27 Aligned_cols=57 Identities=16% Similarity=0.305 Sum_probs=48.7
Q ss_pred EEEEEeeeccCCCceeeeecCCEEEEEeCCCCCCCcEEEEecCCCCCeecccccceeecCC
Q psy12864 44 MTWVLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPTCVLKQPP 104 (147)
Q Consensus 44 ~~~Vi~dF~Ar~~~ELSv~kGq~VEIlE~~~~~p~WwLvR~~~~~~gqeGlVP~n~L~~~~ 104 (147)
-+++++.|.|...+||+++++|.|-|+.+-. -||..+... .+|..||+|.+|.+-.-
T Consensus 610 Qv~~~~sy~a~q~Del~Le~~Dvv~v~~k~~--DGWl~GeRl--~Dge~GWFP~~~veeI~ 666 (695)
T KOG3523|consen 610 QVQCVHSYKAKQPDELTLELADVVNVLQKTP--DGWLEGERL--RDGERGWFPSSYVEEIT 666 (695)
T ss_pred hhheeeccccCCCceeeeehhhhhhhhhcCC--Ccccccccc--ccCccCcchHHHHHHhc
Confidence 3478999999999999999999999999863 399988776 57999999999875443
No 44
>smart00326 SH3 Src homology 3 domains. Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.
Probab=96.25 E-value=0.0053 Score=37.36 Aligned_cols=36 Identities=39% Similarity=0.598 Sum_probs=31.3
Q ss_pred eEEEeeeccccccccceeeceEEEEeecCCCCCCcccC
Q psy12864 2 TWVLADYTAANTTELSVHKGQQVEVVHNSSAPPDWALG 39 (147)
Q Consensus 2 t~vvanfsa~~~~ELsl~kGq~VeVle~~~~~~~W~~~ 39 (147)
..++.||.+....+|++++|+.|.|++.. ..+|+.+
T Consensus 5 ~~a~~~~~~~~~~~l~~~~Gd~v~v~~~~--~~~w~~~ 40 (58)
T smart00326 5 VRALYDYTAQDPDELSFKKGDIITVLEKS--DDGWWKG 40 (58)
T ss_pred EEEeeeeCCCCCCCCCCCCCCEEEEEEcC--CCCeEEE
Confidence 35889999999999999999999999987 5778654
No 45
>KOG3725|consensus
Probab=96.24 E-value=0.0012 Score=57.39 Aligned_cols=56 Identities=27% Similarity=0.364 Sum_probs=50.9
Q ss_pred eEEEEEeeeccCCCceeeeecCCEEEEEeCCCCCCCcEEEEecCCCCCeecccccceeec
Q psy12864 43 EMTWVLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPTCVLKQ 102 (147)
Q Consensus 43 e~~~Vi~dF~Ar~~~ELSv~kGq~VEIlE~~~~~p~WwLvR~~~~~~gqeGlVP~n~L~~ 102 (147)
-...|+|||+|-.++||++-..+.+.|...+.-|++|-.+... ++.|-||..||+.
T Consensus 318 rkArVlyDYdAa~s~ElslladeiitVyslpGMD~dwlmgErG----nkkGKvPvtYlEL 373 (375)
T KOG3725|consen 318 RKARVLYDYDAALSQELSLLADEIITVYSLPGMDADWLMGERG----NKKGKVPVTYLEL 373 (375)
T ss_pred cceeeeecccccchhhhhhhhcceEEEEecCCCChHHhhhhhc----CCCCCcchhHHHh
Confidence 3568999999999999999999999999999889999999864 8999999999874
No 46
>KOG3632|consensus
Probab=96.17 E-value=0.0048 Score=61.04 Aligned_cols=60 Identities=22% Similarity=0.390 Sum_probs=48.7
Q ss_pred eEEEEEeeeccC--------CCceeeeecCCEEEEEeCCCCCCCcEEEEecCCCCCeecccccceeecCCCCC
Q psy12864 43 EMTWVLADYTAT--------NTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPTCVLKQPPPSV 107 (147)
Q Consensus 43 e~~~Vi~dF~Ar--------~~~ELSv~kGq~VEIlE~~~~~p~WwLvR~~~~~~gqeGlVP~n~L~~~~~~~ 107 (147)
-+++++.||+.. .+.||.|++||.+.|+-.. +.-|+|+...+ |+.||||+|++...+-..
T Consensus 1139 rifVAlfDYDpl~MSpNpDAaEeELpFregqIikV~GDk-DadgFY~GE~n----gr~GlIPcNmvae~~vd~ 1206 (1335)
T KOG3632|consen 1139 RIFVALFDYDPLQMSPNPDAAEEELPFREGQIIKVLGDK-DADGFYMGELN----GRRGLIPCNMVAEQPVDN 1206 (1335)
T ss_pred eeeEeeeccCccccCCCCChhhhccccccCcEEEEeccc-cccceeecccc----cccccccccccccccCCc
Confidence 378899999654 5789999999999998654 33499999986 999999999997765443
No 47
>PF06347 SH3_4: Bacterial SH3 domain; InterPro: IPR010466 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This family consists of several hypothetical bacterial proteins of unknown function, but that contain an SH-3 region.
Probab=96.06 E-value=0.011 Score=37.95 Aligned_cols=35 Identities=26% Similarity=0.462 Sum_probs=29.5
Q ss_pred eeeecCCEEEEEeCCCCCCCcEEEEecCCCCCeeccccccee
Q psy12864 59 LSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPTCVL 100 (147)
Q Consensus 59 LSv~kGq~VEIlE~~~~~p~WwLvR~~~~~~gqeGlVP~n~L 100 (147)
-.+.+|..|+|++... +||.|+. .|.+|+|+.+.|
T Consensus 19 ~~l~~g~~v~v~~~~~---~W~~V~~----~g~~GWv~~~~l 53 (55)
T PF06347_consen 19 ARLEPGVPVRVIECRG---GWCKVRA----DGRTGWVHKSLL 53 (55)
T ss_pred EEECCCCEEEEEEccC---CeEEEEE----CCeEEeEEeeec
Confidence 4578999999997654 9999994 499999999876
No 48
>KOG4773|consensus
Probab=95.89 E-value=0.0018 Score=57.62 Aligned_cols=54 Identities=19% Similarity=0.260 Sum_probs=48.1
Q ss_pred EEEEEeeeccCCCceeeeecCCEEEEEeCCCCCCCcEEEEecCCCCCeecccccceeecC
Q psy12864 44 MTWVLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPTCVLKQP 103 (147)
Q Consensus 44 ~~~Vi~dF~Ar~~~ELSv~kGq~VEIlE~~~~~p~WwLvR~~~~~~gqeGlVP~n~L~~~ 103 (147)
-+.++.||......||+|.+|++++++++. +.+||++.+- +..||.|.+|+++.
T Consensus 177 ~~~a~~df~gns~~EL~l~agdV~~~~~r~--ek~W~~gk~R----~~~g~yp~sF~~~l 230 (386)
T KOG4773|consen 177 RAEASFDFPGNSKLELNLVAGDVEFLLSRD--EKYWLLGKVR----GLTGYYPDSFVKQL 230 (386)
T ss_pred HHHhhccCCCCccceeeeehhhHHHHHhhc--ccceeeeeec----cccccccHHhhhhh
Confidence 456788999999999999999999999986 3599999884 89999999999876
No 49
>KOG4429|consensus
Probab=93.89 E-value=0.025 Score=50.09 Aligned_cols=55 Identities=11% Similarity=0.049 Sum_probs=46.9
Q ss_pred EEEEEeeeccCCCceeeeecCCEEEEEeCCCCCCCcEEEEecCCCCCeecccccceeecCC
Q psy12864 44 MTWVLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPTCVLKQPP 104 (147)
Q Consensus 44 ~~~Vi~dF~Ar~~~ELSv~kGq~VEIlE~~~~~p~WwLvR~~~~~~gqeGlVP~n~L~~~~ 104 (147)
..-++|.|+||.++||...+|+.+.+=|+-+ .+||.+|.+ |.-|-+|+.+++-.+
T Consensus 365 lcdafYSfqarqddel~~e~gditif~Ekke--eg~~f~rl~----gd~~hf~Aa~iEea~ 419 (421)
T KOG4429|consen 365 LCDAFYSFQARQDDELGGEIGDITIFDEKKE--EGPTFCRLL----GDFEHFHAAEIEEAL 419 (421)
T ss_pred HhhhhhccccccccccCCcccceeeecCccc--CCCceeeec----cccCCCcHHHHHHhc
Confidence 4568899999999999999999998877653 599999997 899999998886544
No 50
>COG3103 SH3 domain protein [Signal transduction mechanisms]
Probab=93.87 E-value=0.076 Score=43.88 Aligned_cols=43 Identities=23% Similarity=0.347 Sum_probs=36.9
Q ss_pred eeecCCEEEEEeCCCCCCCcEEEEecCCCCCeecccccceeecCCCC
Q psy12864 60 SVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPTCVLKQPPPS 106 (147)
Q Consensus 60 Sv~kGq~VEIlE~~~~~p~WwLvR~~~~~~gqeGlVP~n~L~~~~~~ 106 (147)
++++||.|.|+... ++-+|.++|.. .|..|+||...|...++.
T Consensus 49 ~i~~Ge~vtvl~~~-~~~~~~qI~~~---~g~t~wi~~~~lt~e~s~ 91 (205)
T COG3103 49 SIKAGEKVTVLGTD-GNTGYYQIRDS---SGRTGWILSKNLTSEPSS 91 (205)
T ss_pred EecCCcEEEEEEEc-CcccEEEEEec---CCceEEEechhhcccccc
Confidence 57999999999987 34579999986 699999999999777665
No 51
>KOG4792|consensus
Probab=93.77 E-value=0.13 Score=44.09 Aligned_cols=92 Identities=18% Similarity=0.276 Sum_probs=68.7
Q ss_pred EeeeccccccccceeeceEEEEeecCCCCCCcccC-----------------------------------------Ccc-
Q psy12864 5 LADYTAANTTELSVHKGQQVEVVHNSSAPPDWALG-----------------------------------------SGI- 42 (147)
Q Consensus 5 vanfsa~~~~ELsl~kGq~VeVle~~~~~~~W~~~-----------------------------------------g~~- 42 (147)
+.||.+....||-.+||++.+++++. .-.||.. ++.
T Consensus 130 ~fdF~G~deeDLPFkkGeiL~I~~K~--eeqWW~Arns~Gk~GmIPvpYVe~~~~~~~~~~~~~~ga~e~si~q~~~g~e 207 (293)
T KOG4792|consen 130 LFDFNGNDEEDLPFKKGEILRIRDKP--EEQWWNARNSEGKRGMIPVPYVEKYRPASASVSALIGGASESSIPQSGGGAE 207 (293)
T ss_pred eeccCCCccccCCcccCcEEEEecCc--HHHhhhhhccCCcccceechHHHhhhhhhcccccccCCcccccCCCCCCCCC
Confidence 67999999999999999999999975 2223310 000
Q ss_pred -------------e-------EEEEEeee--ccCCCceeeeecCCEEEEEeCCCCCCCcEEEEecCCCCCeeccccccee
Q psy12864 43 -------------E-------MTWVLADY--TATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPTCVL 100 (147)
Q Consensus 43 -------------e-------~~~Vi~dF--~Ar~~~ELSv~kGq~VEIlE~~~~~p~WwLvR~~~~~~gqeGlVP~n~L 100 (147)
+ +.-|+.+= .|=....|-+++||.|.|-.+.- .|-|.++.+ |+.|.||--++
T Consensus 208 ~~s~a~~s~~~~l~l~~~lPa~Arv~q~RVPnAYDkTaL~levGdiVkVTk~ni--nGqwegEln----Gk~G~fPfThv 281 (293)
T KOG4792|consen 208 RFSSASTSSDTPLPLQQNLPAYARVIQKRVPNAYDKTALALEVGDIVKVTKKNI--NGQWEGELN----GKIGHFPFTHV 281 (293)
T ss_pred CCCCCCcccCCcCccccCCChheeeehhcCCCccChhhhhhhcCcEEEEEeecc--Cceeeeeec----CccccccceeE
Confidence 1 22344433 44578899999999999999863 489999986 99999999988
Q ss_pred ecCC
Q psy12864 101 KQPP 104 (147)
Q Consensus 101 ~~~~ 104 (147)
+-..
T Consensus 282 rf~d 285 (293)
T KOG4792|consen 282 RFTD 285 (293)
T ss_pred Eeec
Confidence 7643
No 52
>KOG2199|consensus
Probab=93.11 E-value=0.051 Score=49.42 Aligned_cols=35 Identities=37% Similarity=0.676 Sum_probs=31.4
Q ss_pred EEeeeccccccccceeeceEEEEeecCCCCCCcccCC
Q psy12864 4 VLADYTAANTTELSVHKGQQVEVVHNSSAPPDWALGS 40 (147)
Q Consensus 4 vvanfsa~~~~ELsl~kGq~VeVle~~~~~~~W~~~g 40 (147)
.++||.|..++|||.++|+++.||+.+ -+.||.+.
T Consensus 220 ALYDFeAaE~nELsFkaGdIItVLd~s--~~~WWKG~ 254 (462)
T KOG2199|consen 220 ALYDFEAAEDNELSFKAGDIITVLDDS--DPNWWKGE 254 (462)
T ss_pred hhhcccccCCCccceecCcEEEEcccC--Ccchhccc
Confidence 578999999999999999999999988 47899763
No 53
>KOG1451|consensus
Probab=91.98 E-value=0.16 Score=48.53 Aligned_cols=55 Identities=25% Similarity=0.338 Sum_probs=44.4
Q ss_pred eEEEEEeeeccCCCceeeeecCCEEEEEeCCCCCCCcEEEEecCCCCCeecccccceeec
Q psy12864 43 EMTWVLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPTCVLKQ 102 (147)
Q Consensus 43 e~~~Vi~dF~Ar~~~ELSv~kGq~VEIlE~~~~~p~WwLvR~~~~~~gqeGlVP~n~L~~ 102 (147)
+-...+|.-.|.-..||+|..|++..=+-.+ ..+||-.++.+ |.+||+|+||.++
T Consensus 757 rk~k~lyAc~a~h~selsf~~gt~f~nv~~S-~e~Gwl~GtLn----Gktglip~nyve~ 811 (812)
T KOG1451|consen 757 RRVKTLYACTADHHSELSFEPGTIFTNVYES-NEDGWLVGTLN----GKTGLIPSNYVEP 811 (812)
T ss_pred ccccceeccCCCCcccccccCcceeeeeccc-CCCCceeeecC----CCcccCcccccCc
Confidence 3456677778888899999999998766644 34689888875 9999999999876
No 54
>KOG3632|consensus
Probab=91.64 E-value=0.1 Score=52.07 Aligned_cols=55 Identities=24% Similarity=0.388 Sum_probs=45.8
Q ss_pred EEEEEeeeccC-------CCceeeeecCCEEEEEeCCCCCCCcEEEEecCCCCCeecccccceeecC
Q psy12864 44 MTWVLADYTAT-------NTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPTCVLKQP 103 (147)
Q Consensus 44 ~~~Vi~dF~Ar-------~~~ELSv~kGq~VEIlE~~~~~p~WwLvR~~~~~~gqeGlVP~n~L~~~ 103 (147)
-+++.+||..+ ++.||.|+.|+.+.|.-.- ++.+++.+..+ |+.||||+|+|+-+
T Consensus 1246 ~mvaa~dydpqeSSpg~dgeAelafraGdIitVfg~m-dddgfyyGeln----gqkglvpsnfle~p 1307 (1335)
T KOG3632|consen 1246 QMVAASDYDPQESSPGLDGEAELAFRAGDIITVFGKM-DDDGFYYGELN----GQKGLVPSNFLEAP 1307 (1335)
T ss_pred hhhhhhcCCcccCCCCcccceeeccccCCeEEeeccc-cCCcccccccC----CccCccccccccCC
Confidence 45778899665 4579999999999998876 45689999875 99999999999765
No 55
>PRK13914 invasion associated secreted endopeptidase; Provisional
Probab=90.79 E-value=0.33 Score=44.82 Aligned_cols=43 Identities=19% Similarity=0.297 Sum_probs=33.6
Q ss_pred eeeeecCCEEEEEeCCCCCCCcEEEEecCCCCCeecccccceeecCCC
Q psy12864 58 ELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPTCVLKQPPP 105 (147)
Q Consensus 58 ELSv~kGq~VEIlE~~~~~p~WwLvR~~~~~~gqeGlVP~n~L~~~~~ 105 (147)
-=++.+|+.|+|+.. ...+|+.++.. .|++|||=+.||...++
T Consensus 102 Igsl~~G~~V~Vl~~--~~ngW~kI~~~---~GktGwV~~~YLs~~~~ 144 (481)
T PRK13914 102 ITSIKGGTKVTVETT--ESNGWHKITYN---DGKTGFVNGKYLTDKVT 144 (481)
T ss_pred eeeecCCCEEEEeec--ccCCeEEEEcC---CCCEEEEecccccCCCc
Confidence 346889999999852 22389999985 58999999999976433
No 56
>KOG0609|consensus
Probab=90.71 E-value=0.097 Score=48.82 Aligned_cols=53 Identities=25% Similarity=0.420 Sum_probs=39.8
Q ss_pred EEEeeeccCC-------CceeeeecCCEEEEEeCCCCCCCcEEEEecCC-CCCeeccccccee
Q psy12864 46 WVLADYTATN-------TTELSVHKGQQVEVVHNSSAPPDWALVRLSLG-EECSEGLVPTCVL 100 (147)
Q Consensus 46 ~Vi~dF~Ar~-------~~ELSv~kGq~VEIlE~~~~~p~WwLvR~~~~-~~gqeGlVP~n~L 100 (147)
-+..||.... +--|+|++||.++|+.. +|+-||-+|.... ..+--||+|+..+
T Consensus 218 ra~FdYdP~~D~~IPCkEagl~F~~GDILqIv~q--dD~nWWQA~~~~~~~~~~AGLiPS~~~ 278 (542)
T KOG0609|consen 218 RALFDYDPKEDDLIPCKEAGLPFQRGDILQIVSQ--DDPNWWQARRVGDPFGGLAGLIPSKEL 278 (542)
T ss_pred hhhcCcCcccCCcccchhcCCcccccceeeeccC--CCcchhhhhcccCccccccccccCHHH
Confidence 3445775543 44689999999999998 5689999998622 2366899999877
No 57
>KOG2996|consensus
Probab=90.31 E-value=0.25 Score=47.32 Aligned_cols=49 Identities=18% Similarity=0.321 Sum_probs=41.2
Q ss_pred ceeeeecCCEEEEEeCCCCCCCcEEEEecCCCCCeecccccceeecCCCCCC
Q psy12864 57 TELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPTCVLKQPPPSVL 108 (147)
Q Consensus 57 ~ELSv~kGq~VEIlE~~~~~p~WwLvR~~~~~~gqeGlVP~n~L~~~~~~~~ 108 (147)
--|.+..|+.||++.-.. -.-||+.|+. +.+.-|++|+|.++|.++...
T Consensus 625 P~l~~~~gdvlel~~~d~-~s~~w~gr~~--~sr~sg~fpss~vkp~~~vpr 673 (865)
T KOG2996|consen 625 PRLVLQEGDVLELLKGDA-ESSWWEGRNH--GSRESGNFPSSTVKPCPSVPR 673 (865)
T ss_pred CceEecCCceeehhcCCC-CCcccccCCc--cCCccCCCCccccCcCCCCCC
Confidence 568899999999987653 2379999997 678899999999999888765
No 58
>KOG3565|consensus
Probab=90.25 E-value=0.07 Score=50.52 Aligned_cols=57 Identities=21% Similarity=0.395 Sum_probs=48.5
Q ss_pred EEEEeeeccCCCceeeeecCCEEEEEeCCCCCCCcEEEEecCCCCCeecccccceeecCC
Q psy12864 45 TWVLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPTCVLKQPP 104 (147)
Q Consensus 45 ~~Vi~dF~Ar~~~ELSv~kGq~VEIlE~~~~~p~WwLvR~~~~~~gqeGlVP~n~L~~~~ 104 (147)
+.+++.|.+.+.+++++..|+.+.+++... ..+|--+|. ...+..|+||.+||.-.+
T Consensus 581 ~~a~~~~~~~s~~~~si~~~~il~~ie~~~-g~gwt~~r~--~~~~~~g~~Ptsyl~~~~ 637 (640)
T KOG3565|consen 581 SKALYAFEGQSEGTISIDPGEILQVIEEDK-GDGWTRGRL--EPNGEKGYVPTSYLDVTE 637 (640)
T ss_pred eecccCcCCCCCCccccCcchhHHHHhhcc-cCCCCCCCC--CCCCcCCCCCcccccccc
Confidence 467889999999999999999999999984 359999992 246899999999997654
No 59
>KOG2222|consensus
Probab=89.90 E-value=0.087 Score=49.53 Aligned_cols=55 Identities=15% Similarity=0.225 Sum_probs=46.9
Q ss_pred EEEeeeccCCCceeeeecCCEEEEEeCCCCCCCcEEEEecCCCCCeecccccceeecCCCC
Q psy12864 46 WVLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPTCVLKQPPPS 106 (147)
Q Consensus 46 ~Vi~dF~Ar~~~ELSv~kGq~VEIlE~~~~~p~WwLvR~~~~~~gqeGlVP~n~L~~~~~~ 106 (147)
-+++||.-...+||-|+|.+.+.||..- ++--|.+..+ |-+||+|+-+.+...+.
T Consensus 552 kal~df~r~dddelgfrkndiitiisek--dehcwvgeln----glrgwfpakfvellder 606 (848)
T KOG2222|consen 552 KALHDFAREDDDELGFRKNDIITIISEK--DEHCWVGELN----GLRGWFPAKFVELLDER 606 (848)
T ss_pred HHHhhhhhccccccccccccEEEEeecC--Ccceeeeccc----cccccchHHHHHHHHhc
Confidence 4788999999999999999999999874 3466888875 99999999999876654
No 60
>KOG0040|consensus
Probab=88.67 E-value=0.016 Score=59.69 Aligned_cols=58 Identities=26% Similarity=0.517 Sum_probs=49.0
Q ss_pred eEEEEEeeeccCCCceeeeecCCEEEEEeCCCCCCCcEEEEecCCCCCeecccccceeecCCCC
Q psy12864 43 EMTWVLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPTCVLKQPPPS 106 (147)
Q Consensus 43 e~~~Vi~dF~Ar~~~ELSv~kGq~VEIlE~~~~~p~WwLvR~~~~~~gqeGlVP~n~L~~~~~~ 106 (147)
+.+.++|||...+.+|++..||+.+.++.. .+-+||.||.+ ..-|+||+.|.+....+
T Consensus 969 ~~v~alyd~q~kSprev~mKkgDvltll~s--~nkdwwkve~~----d~qg~vpa~yvk~~~~~ 1026 (2399)
T KOG0040|consen 969 ECVLALYDYQEKSPREVTMKKGDVLTLLNS--INKDWWKVEVN----DRQGFVPAAYVKRLDPG 1026 (2399)
T ss_pred HHHHHHHHHHhcCHHHHHHhhhhHHHHHhh--cccccccchhh----hhcCcchHHHHHHhccC
Confidence 456789999999999999999999877655 45699999987 68899999999876443
No 61
>KOG0199|consensus
Probab=85.89 E-value=1.2 Score=44.00 Aligned_cols=53 Identities=17% Similarity=0.203 Sum_probs=43.6
Q ss_pred EEEeeeccCCCceeeeecCCEEEEEeCCCCCCCcEEEEecCCCCCeecccccceee
Q psy12864 46 WVLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPTCVLK 101 (147)
Q Consensus 46 ~Vi~dF~Ar~~~ELSv~kGq~VEIlE~~~~~p~WwLvR~~~~~~gqeGlVP~n~L~ 101 (147)
.+..++++...+.|-++|||.+.|||... ..-||...|. .+++-|.+|.|+..
T Consensus 378 ~a~~~~d~~ep~aLh~~kgD~IvVIegs~-a~y~WfgQn~--Rn~kvG~Fprsvvt 430 (1039)
T KOG0199|consen 378 VARETYDSIEPGALHLTKGDEIVVIEGSG-AGYDWFGQNK--RNQKVGTFPRSVVT 430 (1039)
T ss_pred eeeeeccccCCCceeeccCCeEEEEecCC-ccceeecccc--ccceecccCcceee
Confidence 45556667778899999999999999884 3579999876 56899999999886
No 62
>KOG3705|consensus
Probab=85.67 E-value=0.77 Score=42.45 Aligned_cols=55 Identities=18% Similarity=0.253 Sum_probs=45.3
Q ss_pred ceEEEEEeeeccCCCceeeeecCCEEEEEeCCCCCCCcEEEEecCCCCCeeccccccee
Q psy12864 42 IEMTWVLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPTCVL 100 (147)
Q Consensus 42 ~e~~~Vi~dF~Ar~~~ELSv~kGq~VEIlE~~~~~p~WwLvR~~~~~~gqeGlVP~n~L 100 (147)
.+-.+||+++.+|+..|+-++.||.|-|--++= .|..++.|. .++++|++|+.-+
T Consensus 509 AHn~ivi~aH~prt~~ei~l~vGD~vgvAGNHW--dGySKG~Nr--~t~~~GlfPSyKv 563 (580)
T KOG3705|consen 509 AHNVIVIEAHIPRTNKEIDLKVGDKVGVAGNHW--DGYSKGTNR--QTYKEGLFPSYKV 563 (580)
T ss_pred ccceEEEEecCCCcccccCcccCCeeeeccccc--ccccccccc--cccccCCCcccee
Confidence 356789999999999999999999999987652 266777775 6899999998543
No 63
>KOG3775|consensus
Probab=85.60 E-value=0.73 Score=42.06 Aligned_cols=57 Identities=14% Similarity=0.170 Sum_probs=45.9
Q ss_pred EEEEEeeeccCCCceeeeecCCEEEEEeCCCCCCCcEEEEecCCCCCeecccccceeecCC
Q psy12864 44 MTWVLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPTCVLKQPP 104 (147)
Q Consensus 44 ~~~Vi~dF~Ar~~~ELSv~kGq~VEIlE~~~~~p~WwLvR~~~~~~gqeGlVP~n~L~~~~ 104 (147)
.-.+++.|..|-.+||-++.|+.|-| |..+ +-=|+-+-|. .+|+.|.+|+.|.+-.+
T Consensus 264 THR~~~rFvPRHpDELeLEIgDav~V-e~ea-dD~W~~G~Nl--RTG~~GIFPA~ya~evd 320 (482)
T KOG3775|consen 264 THRAVFRFVPRHPDELELEIGDAVLV-EAEA-DDFWFEGFNL--RTGERGIFPAFYAHEVD 320 (482)
T ss_pred hhhhhhhccCCCcceeeeecCCeeEe-eecc-cchhhccccc--cccccccccceeEEecC
Confidence 34789999999999999999999965 4432 2358888887 68999999999986543
No 64
>KOG4575|consensus
Probab=84.89 E-value=2.8 Score=40.71 Aligned_cols=53 Identities=17% Similarity=0.359 Sum_probs=41.3
Q ss_pred EEEEEeeeccCCCceeeeecCCEEEEEeCCCCCCCcEEEEecCCCCCeeccccccee
Q psy12864 44 MTWVLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPTCVL 100 (147)
Q Consensus 44 ~~~Vi~dF~Ar~~~ELSv~kGq~VEIlE~~~~~p~WwLvR~~~~~~gqeGlVP~n~L 100 (147)
++.++|.|...-++.|-|..||.+|+..-.. .-||..++. .....||+|+||.
T Consensus 10 ~vrA~y~w~ge~eGdl~f~egDlie~trI~d--gkwwi~lhr--Nk~~~g~fpsNFv 62 (874)
T KOG4575|consen 10 MVRALYAWPGEREGDLKFTEGDLIEQTRIED--GKWWILLHR--NKDEDGLFPSNFV 62 (874)
T ss_pred eEEeeccCCCCcccccceecccceeEEeecc--ceeeeeeee--cccccccCcccce
Confidence 5678888899999999999999999887743 345544442 2477899999998
No 65
>KOG1843|consensus
Probab=84.23 E-value=0.67 Score=42.48 Aligned_cols=38 Identities=24% Similarity=0.498 Sum_probs=34.7
Q ss_pred EEEeeeccccccccceeeceEEEEeecCCCCCCcccCC
Q psy12864 3 WVLADYTAANTTELSVHKGQQVEVVHNSSAPPDWALGS 40 (147)
Q Consensus 3 ~vvanfsa~~~~ELsl~kGq~VeVle~~~~~~~W~~~g 40 (147)
+.+++|++.+.+|+++++|+++.+|+++..+.+||++-
T Consensus 420 ~a~ysfage~~GDl~f~kgDii~il~ks~s~~dwwtgr 457 (473)
T KOG1843|consen 420 TALYSFAGEQPGDLSFQKGDIITILKKSDSANDWWTGR 457 (473)
T ss_pred eeeehhccCCCCCcccccCceEEEecCCcchhhHHHhh
Confidence 46789999999999999999999999998889999863
No 66
>KOG2856|consensus
Probab=84.22 E-value=0.42 Score=43.47 Aligned_cols=36 Identities=28% Similarity=0.539 Sum_probs=31.9
Q ss_pred EEEeeeccccccccceeeceEEEEeecCCCCCCcccC
Q psy12864 3 WVLADYTAANTTELSVHKGQQVEVVHNSSAPPDWALG 39 (147)
Q Consensus 3 ~vvanfsa~~~~ELsl~kGq~VeVle~~~~~~~W~~~ 39 (147)
.+++||.++..+||++++|+..+.|+.. +.-|||.+
T Consensus 418 raLYDY~gqE~DElsfkaGd~l~kl~ee-DeqGWC~G 453 (472)
T KOG2856|consen 418 RALYDYAGQEGDELSFKAGDELEKLEEE-DEQGWCKG 453 (472)
T ss_pred EeeeccCcccccchhhccccHhhhcCCc-cccccccc
Confidence 5899999999999999999999999876 46789976
No 67
>KOG3812|consensus
Probab=77.87 E-value=0.82 Score=41.44 Aligned_cols=41 Identities=22% Similarity=0.437 Sum_probs=33.2
Q ss_pred CCceeeeecCCEEEEEeCCCCCCCcEEEEecCCCCCeecccccc
Q psy12864 55 NTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPTC 98 (147)
Q Consensus 55 ~~~ELSv~kGq~VEIlE~~~~~p~WwLvR~~~~~~gqeGlVP~n 98 (147)
...-+||..-+.+-|.|+- +.+||.+|.. .+.+.-||||+-
T Consensus 78 ~g~aisF~~kDFlHIkeKy--nnDWWIGRlV-keg~e~gFiPsp 118 (475)
T KOG3812|consen 78 QGHAISFEAKDFLHIKEKY--NNDWWIGRLV-KEGCEIGFIPSP 118 (475)
T ss_pred CCceeeeccccceeehhhc--ccchhHHHHh-hcCCccccccch
Confidence 4567899999999999986 3599988875 456889999983
No 68
>KOG0162|consensus
Probab=76.01 E-value=2.2 Score=42.15 Aligned_cols=35 Identities=37% Similarity=0.712 Sum_probs=31.1
Q ss_pred EEEeeeccccccccceeeceEEEEeecCCCCCCcccC
Q psy12864 3 WVLADYTAANTTELSVHKGQQVEVVHNSSAPPDWALG 39 (147)
Q Consensus 3 ~vvanfsa~~~~ELsl~kGq~VeVle~~~~~~~W~~~ 39 (147)
-.++||.++..+||++++|++++++..- .+|||++
T Consensus 1055 ~A~Y~y~gq~~dEls~~~~diIei~~ed--pSGWw~g 1089 (1106)
T KOG0162|consen 1055 EALYDYPGQDVDELSFKKGDIIEIMRED--PSGWWLG 1089 (1106)
T ss_pred eeeccCCCCCcccccccCCCEEEEeccC--CCcchhh
Confidence 4688999999999999999999999875 5899986
No 69
>KOG3580|consensus
Probab=74.53 E-value=4.7 Score=39.24 Aligned_cols=82 Identities=20% Similarity=0.224 Sum_probs=50.9
Q ss_pred cceeeceEEEEeecCCCCCCcc---cCCcceEEEEEe-eeccCCCceeeeecCCEEEEEeCC-CCCCCcEEEEecCC--C
Q psy12864 16 LSVHKGQQVEVVHNSSAPPDWA---LGSGIEMTWVLA-DYTATNTTELSVHKGQQVEVVHNS-SAPPDWALVRLSLG--E 88 (147)
Q Consensus 16 Lsl~kGq~VeVle~~~~~~~W~---~~g~~e~~~Vi~-dF~Ar~~~ELSv~kGq~VEIlE~~-~~~p~WwLvR~~~~--~ 88 (147)
|.|-||+.|++|.....--=|+ +.-|-.+|+-.| .+......-|.|.+|+...+|+-- .+..|=||+..-.+ .
T Consensus 474 L~lPkGEevtilaQ~k~Dvyr~iv~s~vGDSFyIRtHFE~Eke~P~gL~FtrGeVFrvvDTLy~GklG~WLAvRiG~dlr 553 (1027)
T KOG3580|consen 474 LELPKGEEVTILAQSKADVYRDIVASGVGDSFYIRTHFECEKETPQGLAFTRGEVFRVVDTLYDGKLGNWLAVRIGNDLR 553 (1027)
T ss_pred hcCCCCcEEeehhhhhhHHHHHHHhccCCceeEEeeeeeecCCCCccccccccceeeeeecccCCCCcceEEEeecccHH
Confidence 3455677777776552211222 112234555444 557788999999999999999965 56667666543311 1
Q ss_pred CCeeccccc
Q psy12864 89 ECSEGLVPT 97 (147)
Q Consensus 89 ~gqeGlVP~ 97 (147)
.-.+|++|.
T Consensus 554 E~ErGiIPN 562 (1027)
T KOG3580|consen 554 ELERGIIPN 562 (1027)
T ss_pred HHhcccCCC
Confidence 234899997
No 70
>KOG4278|consensus
Probab=73.49 E-value=3.4 Score=40.71 Aligned_cols=30 Identities=27% Similarity=0.462 Sum_probs=27.5
Q ss_pred CeEEEeeeccccccccceeeceEEEEeecC
Q psy12864 1 MTWVLADYTAANTTELSVHKGQQVEVVHNS 30 (147)
Q Consensus 1 ~t~vvanfsa~~~~ELsl~kGq~VeVle~~ 30 (147)
|-|.++||-|.++..||++||+.+-||...
T Consensus 92 LFVALYDFvasGdntLSitKGeklRvLGYN 121 (1157)
T KOG4278|consen 92 LFVALYDFVASGDNTLSITKGEKLRVLGYN 121 (1157)
T ss_pred eeEeeeeeeccccceeeeecCceEEEeeec
Confidence 458899999999999999999999999965
No 71
>KOG0515|consensus
Probab=71.12 E-value=3.2 Score=39.64 Aligned_cols=36 Identities=28% Similarity=0.552 Sum_probs=30.0
Q ss_pred eEEEeeeccccccccceeeceEEEEeecC-CCCCCcc
Q psy12864 2 TWVLADYTAANTTELSVHKGQQVEVVHNS-SAPPDWA 37 (147)
Q Consensus 2 t~vvanfsa~~~~ELsl~kGq~VeVle~~-~~~~~W~ 37 (147)
...++||+|++++||+.+.|+-++||++- ...-.||
T Consensus 686 vYAlwdYeaqf~DELsf~eGd~lTvirr~d~~eteWW 722 (752)
T KOG0515|consen 686 VYALWDYEAQFEDELSFDEGDELTVIRRDDEVETEWW 722 (752)
T ss_pred eEEeecccccccccccccCCceeEEEecCCcchhhhh
Confidence 35789999999999999999999999985 3335565
No 72
>PF12913 SH3_6: SH3 domain of the SH3b1 type; PDB: 3M1U_B.
Probab=70.86 E-value=8.7 Score=25.61 Aligned_cols=38 Identities=26% Similarity=0.462 Sum_probs=26.8
Q ss_pred CCceeeeecCCEEEEEeCCCCCCCcEEEEecCCCCCeeccccc
Q psy12864 55 NTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPT 97 (147)
Q Consensus 55 ~~~ELSv~kGq~VEIlE~~~~~p~WwLvR~~~~~~gqeGlVP~ 97 (147)
.-++=.+..|+.|-|+-.+. |..|.+|+.. .-.|+|++
T Consensus 17 ~lQ~s~l~~gtPv~i~H~S~-D~~W~fV~t~----~~~GWV~s 54 (54)
T PF12913_consen 17 YLQNSALHPGTPVYILHTSR-DGAWAFVQTP----FYSGWVKS 54 (54)
T ss_dssp TTEEEEE-TT-EEEEEEE-T-TSSEEEEE-S----S-EEEEEG
T ss_pred hhhhcccCCCCCEEEEEECC-CCCEEEEecC----CeeEeeeC
Confidence 34566789999999999884 6699999974 67899875
No 73
>KOG3557|consensus
Probab=70.39 E-value=1.4 Score=42.42 Aligned_cols=28 Identities=46% Similarity=0.718 Sum_probs=25.4
Q ss_pred EEEeeeccccccccceeeceEEEEeecC
Q psy12864 3 WVLADYTAANTTELSVHKGQQVEVVHNS 30 (147)
Q Consensus 3 ~vvanfsa~~~~ELsl~kGq~VeVle~~ 30 (147)
.+.+||.|.|+.||+++||+..|||...
T Consensus 504 ~~~Ydf~arNs~ELsV~k~E~LEvl~d~ 531 (721)
T KOG3557|consen 504 LVLYDFQARNSSELSVKKGEVLEVLDDG 531 (721)
T ss_pred eeehhhhcccchhhhhhhhhhhhhhhcc
Confidence 5789999999999999999999999854
No 74
>KOG2070|consensus
Probab=67.19 E-value=4.8 Score=38.13 Aligned_cols=31 Identities=26% Similarity=0.452 Sum_probs=24.9
Q ss_pred EeeeccccccccceeeceEEEEeecCCCCCCcc
Q psy12864 5 LADYTAANTTELSVHKGQQVEVVHNSSAPPDWA 37 (147)
Q Consensus 5 vanfsa~~~~ELsl~kGq~VeVle~~~~~~~W~ 37 (147)
..||.++|.+||+..||++++|-... .-|||
T Consensus 23 kf~F~gsNnDELsf~KgDvItVTq~e--eGGWW 53 (661)
T KOG2070|consen 23 KFNFQGSNNDELSFSKGDVITVTQVE--EGGWW 53 (661)
T ss_pred EeecccCCCceeccccCCEEEEEEec--cCcce
Confidence 45678899999999999999998865 34555
No 75
>KOG3875|consensus
Probab=64.77 E-value=1.6 Score=38.89 Aligned_cols=27 Identities=33% Similarity=0.557 Sum_probs=24.4
Q ss_pred EEeeeccccccccceeeceEEEEeecC
Q psy12864 4 VLADYTAANTTELSVHKGQQVEVVHNS 30 (147)
Q Consensus 4 vvanfsa~~~~ELsl~kGq~VeVle~~ 30 (147)
.++||.+.+..|+++++||+..|+-|.
T Consensus 273 A~YdF~a~np~ElSlk~Gdml~ia~K~ 299 (362)
T KOG3875|consen 273 ALYDFVARNPVELSLKKGDMLAIASKE 299 (362)
T ss_pred HHhhhhcCCHHHhhhhcCchhhccccc
Confidence 467999999999999999999999875
No 76
>COG3807 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.80 E-value=2.7 Score=34.06 Aligned_cols=35 Identities=31% Similarity=0.602 Sum_probs=30.0
Q ss_pred eecCCEEEEEeCCCCCCCcEEEEecCCCCCeecccccceee
Q psy12864 61 VHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPTCVLK 101 (147)
Q Consensus 61 v~kGq~VEIlE~~~~~p~WwLvR~~~~~~gqeGlVP~n~L~ 101 (147)
+.||..|||+..-. .|=-+|.. +|.+|+|-.+.|.
T Consensus 61 ~k~GlPVEIvqEy~---~WRrirDa---dG~egWv~qslls 95 (171)
T COG3807 61 LKKGLPVEIVQEYD---NWRRIRDA---DGTEGWVHQSLLS 95 (171)
T ss_pred eccCCceehhhhhh---hhhheeCC---CCCceeeeeeccc
Confidence 47999999999875 89888875 6999999998883
No 77
>KOG2546|consensus
Probab=61.59 E-value=4.6 Score=37.33 Aligned_cols=34 Identities=29% Similarity=0.445 Sum_probs=30.1
Q ss_pred EEEeeeccccccccceeeceEEEEeecCCCCCCccc
Q psy12864 3 WVLADYTAANTTELSVHKGQQVEVVHNSSAPPDWAL 38 (147)
Q Consensus 3 ~vvanfsa~~~~ELsl~kGq~VeVle~~~~~~~W~~ 38 (147)
++++||.+..++||+..+|-++.|+++. ..+|+-
T Consensus 427 v~iydy~~~KddeLsf~E~ailyv~kkn--ddgw~E 460 (483)
T KOG2546|consen 427 VAIYDYTADKDDELSFAEGAILYVLKKN--DDGWYE 460 (483)
T ss_pred HhhcccccccccccccccccEEEEEEec--CCcchh
Confidence 5789999999999999999999999994 577863
No 78
>PF05641 Agenet: Agenet domain; InterPro: IPR008395 This domain is related to the TUDOR domain IPR008191 from INTERPRO []. The function of the agenet domain is unknown. This signature matches one of the two Agenet domains in the FMR proteins [].; GO: 0003723 RNA binding; PDB: 2BKD_N 3O8V_A 3KUF_A 3H8Z_A.
Probab=59.90 E-value=9.9 Score=25.41 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=15.6
Q ss_pred eecCCEEEEEeCCCCCC-CcEEEEec
Q psy12864 61 VHKGQQVEVVHNSSAPP-DWALVRLS 85 (147)
Q Consensus 61 v~kGq~VEIlE~~~~~p-~WwLvR~~ 85 (147)
|++|+.|||.-...+.. .|+.+...
T Consensus 1 F~~G~~VEV~s~e~g~~gaWf~a~V~ 26 (68)
T PF05641_consen 1 FKKGDEVEVSSDEDGFRGAWFPATVL 26 (68)
T ss_dssp --TT-EEEEEE-SBTT--EEEEEEEE
T ss_pred CCCCCEEEEEEcCCCCCcEEEEEEEE
Confidence 68999999998775544 68877654
No 79
>KOG1118|consensus
Probab=54.20 E-value=9.5 Score=34.14 Aligned_cols=33 Identities=21% Similarity=0.461 Sum_probs=27.9
Q ss_pred EEeeeccccccccceeeceEEEEeecCCCCCCccc
Q psy12864 4 VLADYTAANTTELSVHKGQQVEVVHNSSAPPDWAL 38 (147)
Q Consensus 4 vvanfsa~~~~ELsl~kGq~VeVle~~~~~~~W~~ 38 (147)
.++||.+.+++||.+++|++++|.+.. -.+|+-
T Consensus 311 alYdFepenEgEL~fkeGDlI~l~~QI--denWye 343 (366)
T KOG1118|consen 311 ALYDFEPENEGELDFKEGDLITLTNQI--DENWYE 343 (366)
T ss_pred eeeccCCCCCCccCcccCceeeehhhc--Ccchhh
Confidence 578999999999999999999999865 245653
No 80
>KOG3771|consensus
Probab=53.05 E-value=8.2 Score=35.71 Aligned_cols=34 Identities=35% Similarity=0.504 Sum_probs=28.0
Q ss_pred EEeeeccccccccceeeceEEEEeecCCCCCCccc
Q psy12864 4 VLADYTAANTTELSVHKGQQVEVVHNSSAPPDWAL 38 (147)
Q Consensus 4 vvanfsa~~~~ELsl~kGq~VeVle~~~~~~~W~~ 38 (147)
.++||.|..++||+++.|+.|.|++ ......||-
T Consensus 405 a~~dy~a~~~deLsf~~gd~i~vi~-s~~~~e~~e 438 (460)
T KOG3771|consen 405 ALHDYAAQDTDELSFEAGDVILVIP-SDNPEEQDE 438 (460)
T ss_pred ccccccccccccccccCCCEEEEec-CCCccchhh
Confidence 6899999999999999999999999 333355543
No 81
>PF11302 DUF3104: Protein of unknown function (DUF3104); InterPro: IPR021453 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=52.33 E-value=18 Score=25.80 Aligned_cols=27 Identities=30% Similarity=0.447 Sum_probs=21.5
Q ss_pred eeeecCCEEEEEeCC----CCCCCcEEEEec
Q psy12864 59 LSVHKGQQVEVVHNS----SAPPDWALVRLS 85 (147)
Q Consensus 59 LSv~kGq~VEIlE~~----~~~p~WwLvR~~ 85 (147)
|+|+.|+.|-|-... ..+.+||.+...
T Consensus 4 L~Vk~Gd~ViV~~~~~~~~~~~~dWWmg~Vi 34 (75)
T PF11302_consen 4 LSVKPGDTVIVQDEQEVGQKQDKDWWMGQVI 34 (75)
T ss_pred cccCCCCEEEEecCccccccCCCCcEEEEEE
Confidence 789999999887766 445699998875
No 82
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=52.25 E-value=20 Score=22.91 Aligned_cols=24 Identities=25% Similarity=0.462 Sum_probs=18.9
Q ss_pred eeecCCEEEEEeCCCCCCCcEEEEec
Q psy12864 60 SVHKGQQVEVVHNSSAPPDWALVRLS 85 (147)
Q Consensus 60 Sv~kGq~VEIlE~~~~~p~WwLvR~~ 85 (147)
.+.+|+.|++.... +..||-++..
T Consensus 2 ~~~~G~~Ve~~~~~--~~~W~~a~V~ 25 (61)
T smart00743 2 DFKKGDRVEVFSKE--EDSWWEAVVT 25 (61)
T ss_pred CcCCCCEEEEEECC--CCEEEEEEEE
Confidence 36899999999864 4599987764
No 83
>PF01957 NfeD: NfeD-like C-terminal, partner-binding; InterPro: IPR002810 The nfe genes (nfeA, nfeB, and nfeD) are involved in the nodulation efficiency and competitiveness of Rhizobium meliloti (Sinorhizobium meliloti) (Rhizobium meliloti) on alfalfa roots []. The specific function of this family is unknown although it is unlikely that NfeD is specifically involved in nodulation as the family contains several different archaeal and bacterial species most of which are not symbionts. This entry describes archaeal and bacterial proteins which are variously described, examples are: nodulation protein, nodulation efficiency protein D (nfeD), hypothetical protein and membrane-bound serine protease (ClpP class). A number of these proteins are classified in MEROPS peptidase family S49 as non-peptidase homologues or as unassigned peptidases. ; PDB: 2K5H_A 3CP0_A 2EXD_A.
Probab=50.52 E-value=12 Score=27.05 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=17.4
Q ss_pred eeccCCCceeeeecCCEEEEEeCCC
Q psy12864 50 DYTATNTTELSVHKGQQVEVVHNSS 74 (147)
Q Consensus 50 dF~Ar~~~ELSv~kGq~VEIlE~~~ 74 (147)
.|.|++.++ +.+|++|+|++...
T Consensus 113 ~w~A~s~~~--i~~G~~V~Vv~v~g 135 (144)
T PF01957_consen 113 RWRARSEDE--IPKGDRVRVVGVEG 135 (144)
T ss_dssp EEEEEESST--B-TT-EEEEEEEES
T ss_pred EEEEEeCCC--CCCCCEEEEEEEEC
Confidence 567887777 99999999999763
No 84
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=41.19 E-value=1.2e+02 Score=20.90 Aligned_cols=46 Identities=20% Similarity=0.327 Sum_probs=33.4
Q ss_pred CcceEEEEEee--eccCCCceeeeecCCEEEEEeCCCCCCCcEEEEec
Q psy12864 40 SGIEMTWVLAD--YTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLS 85 (147)
Q Consensus 40 g~~e~~~Vi~d--F~Ar~~~ELSv~kGq~VEIlE~~~~~p~WwLvR~~ 85 (147)
|..-+.+.|+| |.......++|..|+.+++.=.-....+|+-....
T Consensus 30 g~~~~~~~v~~~~y~~~~~~~~~v~ag~~~~~~w~l~~s~gwYDl~v~ 77 (89)
T PF05506_consen 30 GSAAVTFTVYDNAYGGGGPWTYTVAAGQTVSLTWPLAASGGWYDLTVT 77 (89)
T ss_pred CCCcEEEEEEeCCcCCCCCEEEEECCCCEEEEEEeecCCCCcEEEEEE
Confidence 44445566665 55567899999999999887655445699977765
No 85
>KOG0199|consensus
Probab=30.10 E-value=54 Score=32.95 Aligned_cols=36 Identities=22% Similarity=0.279 Sum_probs=28.9
Q ss_pred EEEeeeccccccccceeeceEEEEeecCCCCCCcccC
Q psy12864 3 WVLADYTAANTTELSVHKGQQVEVVHNSSAPPDWALG 39 (147)
Q Consensus 3 ~vvanfsa~~~~ELsl~kGq~VeVle~~~~~~~W~~~ 39 (147)
+...+|.+.+.+-|.+++|+.|.|+|.... .-||.+
T Consensus 378 ~a~~~~d~~ep~aLh~~kgD~IvVIegs~a-~y~Wfg 413 (1039)
T KOG0199|consen 378 VARETYDSIEPGALHLTKGDEIVVIEGSGA-GYDWFG 413 (1039)
T ss_pred eeeeeccccCCCceeeccCCeEEEEecCCc-cceeec
Confidence 456677778888999999999999999865 456655
No 86
>KOG2500|consensus
Probab=24.10 E-value=1.1e+02 Score=26.25 Aligned_cols=44 Identities=18% Similarity=0.446 Sum_probs=28.9
Q ss_pred eeccCCCceeeeecCCEEEEEeCC----CCCCCcEEEEecCCCCCeecccc
Q psy12864 50 DYTATNTTELSVHKGQQVEVVHNS----SAPPDWALVRLSLGEECSEGLVP 96 (147)
Q Consensus 50 dF~Ar~~~ELSv~kGq~VEIlE~~----~~~p~WwLvR~~~~~~gqeGlVP 96 (147)
++++..+=.|.|..||.+.|==.+ .+-..|-..... .+-.||+|
T Consensus 141 ~~d~~pslDlgFKEGeTIkinikn~tkk~g~~s~pr~~~g---k~gl~llP 188 (253)
T KOG2500|consen 141 HYDAGPSLDLGFKEGETIKINIKNITKKKGAASWPRTGPG---KGGLGLLP 188 (253)
T ss_pred ccCCCccccccccCCcEEEEEeeccccccccccccccCCC---CCcccccC
Confidence 345566667999999999885543 333356555532 25578999
No 87
>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]
Probab=21.54 E-value=97 Score=24.97 Aligned_cols=27 Identities=26% Similarity=0.336 Sum_probs=20.9
Q ss_pred eEEEEEe-----eeccCCCceeeeecCCEEEE
Q psy12864 43 EMTWVLA-----DYTATNTTELSVHKGQQVEV 69 (147)
Q Consensus 43 e~~~Vi~-----dF~Ar~~~ELSv~kGq~VEI 69 (147)
|+..|+- -|.....+||.|..||.+-|
T Consensus 66 EVl~vlrgqA~l~iGG~~G~el~v~~GDvlli 97 (163)
T COG4297 66 EVLGVLRGQAGLQIGGADGQELEVGEGDVLLI 97 (163)
T ss_pred eEEEEecceeEEEecCCCCceeeecCCCEEEE
Confidence 7765554 56777899999999998866
Done!