RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12864
(147 letters)
>1u3o_A Huntingtin-associated protein-interacting protein; SH3,
CIS-proline,, signaling protein; NMR {Rattus norvegicus}
Length = 82
Score = 81.6 bits (201), Expect = 1e-21
Identities = 29/77 (37%), Positives = 40/77 (51%)
Query: 30 SSAPPDWALGSGIEMTWVLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEE 89
S P L G E+T VL D++A +++ELS+ GQ VE++ S P W LVR +
Sbjct: 5 SPGIPGSTLSGGCELTVVLQDFSAAHSSELSIQVGQTVELLERPSERPGWCLVRTTERSP 64
Query: 90 CSEGLVPTCVLKQPPPS 106
EGLVP+ L
Sbjct: 65 PQEGLVPSSTLCISHSR 81
>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain,
NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens}
SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B
Length = 193
Score = 50.4 bits (120), Expect = 2e-08
Identities = 24/140 (17%), Positives = 46/140 (32%), Gaps = 33/140 (23%)
Query: 4 VLADYTAANTTELSVHKGQQ---------------------------VEVVHNSSAPPDW 36
+ADY + +E+++ G +E + + D
Sbjct: 16 AIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEPLDSPDETEDP 75
Query: 37 ALGSGIEMTWVLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVP 96
E + YTA E+S+ +G+ VEV+H W ++R G P
Sbjct: 76 EPNYAGEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLL--DGWWVIRKD----DVTGYFP 129
Query: 97 TCVLKQPPPSVLRTATSPSK 116
+ L++ V + +
Sbjct: 130 SMYLQKSGQDVSQAQRQIKR 149
>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein
10, SH3 domain, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 70
Score = 45.0 bits (107), Expect = 1e-07
Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 4/59 (6%)
Query: 39 GSGIEMTWVLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPT 97
GS + + ++ +S+ +G+ + ++ W VR G EG VPT
Sbjct: 4 GSSGGHCVAIYHFEGSSEGTISMAEGEDLSLMEEDKG-DGWTRVRRKEGG---EGYVPT 58
Score = 32.6 bits (75), Expect = 0.007
Identities = 3/33 (9%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 4 VLADYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
+ + ++ +S+ +G+ + ++ W
Sbjct: 12 AIYHFEGSSEGTISMAEGEDLSLMEEDKG-DGW 43
>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR
{Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A
2k7a_A
Length = 77
Score = 45.1 bits (107), Expect = 2e-07
Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 7/66 (10%)
Query: 33 PPDWALGSGIEMTWVLA--DYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEEC 90
+ E T V+A DY + EL++ ++ ++ +S W V+ G
Sbjct: 9 EDNRRSFQEPEETLVIALYDYQTNDPQELALRCDEEYYLLDSSE--IHWWRVQDKNGH-- 64
Query: 91 SEGLVP 96
EG P
Sbjct: 65 -EGYAP 69
Score = 34.7 bits (80), Expect = 0.001
Identities = 9/37 (24%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
Query: 2 TWVLA--DYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
T V+A DY + EL++ ++ ++ +S W
Sbjct: 21 TLVIALYDYQTNDPQELALRCDEEYYLLDSSE--IHW 55
>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase,
tyrosine-protein kinase LYK, kinase EMT, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 85
Score = 45.1 bits (107), Expect = 2e-07
Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 7/70 (10%)
Query: 29 NSSAPPDWALGSGIEMTWVLA--DYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSL 86
SS + E T V+A DY + EL++ + ++ ++ +S W V+
Sbjct: 4 GSSGEDNRRPLWEPEETVVIALYDYQTNDPQELALRRNEEYCLLDSSE--IHWWRVQDRN 61
Query: 87 GEECSEGLVP 96
G EG VP
Sbjct: 62 GH---EGYVP 68
Score = 35.0 bits (81), Expect = 0.001
Identities = 9/37 (24%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Query: 2 TWVLA--DYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
T V+A DY + EL++ + ++ ++ +S W
Sbjct: 20 TVVIALYDYQTNDPQELALRRNEEYCLLDSSE--IHW 54
>1i07_A Epidermal growth factor receptor kinase substrate EPS8;
hormone/growth factor; 1.80A {Mus musculus} SCOP:
b.34.2.1 PDB: 1aoj_A 1i0c_A
Length = 60
Score = 44.2 bits (105), Expect = 3e-07
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 47 VLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVP 96
D+ A N++ELSV K +E++ + W VR + G+ G VP
Sbjct: 6 SKYDFVARNSSELSVMKDDVLEILDDRR---QWWKVRNASGD---SGFVP 49
Score = 35.7 bits (83), Expect = 4e-04
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 4 VLADYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
D+ A N++ELSV K +E++ + W
Sbjct: 6 SKYDFVARNSSELSVMKDDVLEILDDRR---QW 35
>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 78
Score = 44.3 bits (105), Expect = 4e-07
Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 4/76 (5%)
Query: 31 SAPPDWALGSGIEMTWVLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEEC 90
S+ L + V+ Y A+ EL++ + + +EV+ DW R +G+
Sbjct: 2 SSGSSGTLRNYPLTCKVVYSYKASQPDELTIEEHEVLEVI-EDGDMEDWVKARNKVGQ-- 58
Query: 91 SEGLVPTCVLKQPPPS 106
G VP L+ P S
Sbjct: 59 -VGYVPEKYLQFPTSS 73
Score = 33.5 bits (77), Expect = 0.003
Identities = 7/33 (21%), Positives = 16/33 (48%)
Query: 4 VLADYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
V+ Y A+ EL++ + + +EV+ +
Sbjct: 18 VVYSYKASQPDELTIEEHEVLEVIEDGDMEDWV 50
>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal
transduction, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens}
Length = 91
Score = 44.4 bits (105), Expect = 4e-07
Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 5/89 (5%)
Query: 29 NSSAPPDWALGSGIEMTWVLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGE 88
SS + + + L +++ EL+ KG+ +EV+ P+W + + G+
Sbjct: 4 GSSGLSNGQGSRVLHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQ 63
Query: 89 ECSEGLVPT--CVLKQPPPSVLRTATSPS 115
GLVP V+ P++ + PS
Sbjct: 64 ---VGLVPKNYVVVLSDGPALHPAHSGPS 89
Score = 34.4 bits (79), Expect = 0.003
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 4 VLADYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
L +++ EL+ KG+ +EV+ P+W
Sbjct: 22 TLYPFSSVTEEELNFEKGETMEVIEKPENDPEW 54
>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418
protein, SH3MD1, SH3 multiple domains 1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 43.8 bits (104), Expect = 5e-07
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 9/70 (12%)
Query: 40 SGIEMTWVLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPTC- 98
SG+E V+++Y +ELS+ G+ V+V+ + W V S E +G VP
Sbjct: 6 SGLEQYVVVSNYKKQENSELSLQAGEVVDVIEKN--ESGWWFVSTS-EE---QGWVPATY 59
Query: 99 --VLKQPPPS 106
P S
Sbjct: 60 LEAQNSGPSS 69
Score = 37.7 bits (88), Expect = 1e-04
Identities = 10/37 (27%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 4 VLADYTAANTTELSVHKGQQVEVVHNSSAPPDWALGS 40
V+++Y +ELS+ G+ V+V+ + W S
Sbjct: 13 VVSNYKKQENSELSLQAGEVVDVIEKN--ESGWWFVS 47
>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR
{Homo sapiens} PDB: 2js2_A
Length = 67
Score = 43.4 bits (103), Expect = 5e-07
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 8/56 (14%)
Query: 43 EMTWVLA--DYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVP 96
E V+A DYTA EL + K +++ ++ +S W VR + G VP
Sbjct: 3 EEVIVIAKWDYTAQQDQELDIKKNERLWLLDDS---KTWWRVRNAANR---TGYVP 52
Score = 34.5 bits (80), Expect = 0.001
Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Query: 7 DYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
DYTA EL + K +++ ++ +S W
Sbjct: 12 DYTAQQDQELDIKKNERLWLLDDS---KTW 38
>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 79
Score = 43.6 bits (103), Expect = 7e-07
Identities = 13/68 (19%), Positives = 25/68 (36%), Gaps = 5/68 (7%)
Query: 29 NSSAPPDWALGSGIEMTWVLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGE 88
SS P G + VL+DY + + + +G+++ V+ + W
Sbjct: 4 GSSGPLPNPEGLDSDFLAVLSDYPSPDISPPIFRRGEKLRVISDE---GGWWKAISLSTG 60
Query: 89 ECSEGLVP 96
E +P
Sbjct: 61 R--ESYIP 66
Score = 32.8 bits (75), Expect = 0.006
Identities = 7/33 (21%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 4 VLADYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
VL+DY + + + +G+++ V+ + W
Sbjct: 22 VLSDYPSPDISPPIFRRGEKLRVISDE---GGW 51
>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3,
protein-protein interaction, structural genomics; NMR
{Homo sapiens}
Length = 68
Score = 43.0 bits (102), Expect = 7e-07
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 7/69 (10%)
Query: 39 GSGIEMTWVLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVP-T 97
GS VL ++ A N EL+V +G+++EV+ +S W LV+ G G +P
Sbjct: 4 GSSGLKMQVLYEFEARNPRELTVVQGEKLEVLDHSK---RWWLVKNEAGR---SGYIPSN 57
Query: 98 CVLKQPPPS 106
+ PS
Sbjct: 58 ILEPLSGPS 66
Score = 34.9 bits (81), Expect = 0.001
Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Query: 4 VLADYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
VL ++ A N EL+V +G+++EV+ +S W
Sbjct: 12 VLYEFEARNPRELTVVQGEKLEVLDHSK---RW 41
>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked
agammaglobulinemia, XLA, BTK, SH3 domain, transferase;
NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A
Length = 67
Score = 43.0 bits (102), Expect = 8e-07
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 7/56 (12%)
Query: 43 EMTWVLA--DYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVP 96
E+ V+A DY N +L + KG + ++ S+ W R G+ EG +P
Sbjct: 7 ELKKVVALYDYMPMNANDLQLRKGDEYFILEESN--LPWWRARDKNGQ---EGYIP 57
Score = 34.1 bits (79), Expect = 0.002
Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
Query: 1 MTWVLA--DYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
+ V+A DY N +L + KG + ++ S+ W
Sbjct: 8 LKKVVALYDYMPMNANDLQLRKGDEYFILEESN--LPW 43
>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil,
cytoplasm, SH3 domain, signaling protein; NMR {Homo
sapiens} PDB: 2rol_A
Length = 68
Score = 43.1 bits (102), Expect = 9e-07
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 8/56 (14%)
Query: 43 EMTWVLA--DYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVP 96
+ WVL D+ A N++ELSV + +EV+ +S W VR G+ EG VP
Sbjct: 7 ALKWVLCNYDFQARNSSELSVKQRDVLEVLDDSR---KWWKVRDPAGQ---EGYVP 56
Score = 34.2 bits (79), Expect = 0.002
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 5/37 (13%)
Query: 2 TWVLA--DYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
WVL D+ A N++ELSV + +EV+ +S W
Sbjct: 9 KWVLCNYDFQARNSSELSVKQRDVLEVLDDSR---KW 42
>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein;
SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 68
Score = 43.0 bits (102), Expect = 9e-07
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 7/69 (10%)
Query: 39 GSGIEMTWVLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVP-T 97
GS + +L D+TA N ELSV K + +EV+ + W +R G+ G VP
Sbjct: 4 GSSGKYVKILYDFTARNANELSVLKDEVLEVLEDGR---QWWKLRSRSGQ---AGYVPCN 57
Query: 98 CVLKQPPPS 106
+ + PS
Sbjct: 58 ILGEASGPS 66
Score = 34.9 bits (81), Expect = 0.001
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Query: 4 VLADYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
+L D+TA N ELSV K + +EV+ + W
Sbjct: 12 ILYDFTARNANELSVLKDEVLEVLEDGR---QW 41
>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel,
beta sheet, zinc finger, metal binding protein; NMR
{Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A
Length = 71
Score = 42.7 bits (101), Expect = 1e-06
Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 41 GIEMTWVLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVP 96
+ + L +++ EL+ KG+ +EV+ P+W + + G+ GLVP
Sbjct: 5 VLHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQ---VGLVP 57
Score = 35.3 bits (82), Expect = 8e-04
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 7 DYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
+++ EL+ KG+ +EV+ P+W
Sbjct: 14 PFSSVTEEELNFEKGETMEVIEKPENDPEW 43
>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP:
b.34.2.1
Length = 71
Score = 42.6 bits (101), Expect = 1e-06
Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 11/69 (15%)
Query: 30 SSAPPDWALGSGIEMTWVLA--DYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLG 87
S+ W G T +A ++ T +L KG + +V + P+W + +G
Sbjct: 2 SAIQASWPSG-----TECIAKYNFHGTAEQDLPFCKGDVLTIV-AVTKDPNWYKAKNKVG 55
Query: 88 EECSEGLVP 96
EG++P
Sbjct: 56 R---EGIIP 61
Score = 31.5 bits (72), Expect = 0.021
Identities = 7/37 (18%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 2 TWVLA--DYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
T +A ++ +L KG + +V + P +
Sbjct: 12 TECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWY 48
>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural
genomics, phosphorylation, structural protein, yeast,
SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A
Length = 60
Score = 42.1 bits (100), Expect = 2e-06
Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Query: 44 MTWVLA--DYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVP 96
M + D+ A + EL++ G +V ++ + DW + +L + GLVP
Sbjct: 2 MERGIVQYDFMAESQDELTIKSGDKVYIL-DDKKSKDWWMCQLVDSGK--SGLVP 53
Score = 36.4 bits (85), Expect = 2e-04
Identities = 9/41 (21%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 1 MTWVLA--DYTAANTTELSVHKGQQVEVVHNSSAPPDWALG 39
M + D+ A + EL++ G +V ++ + DW +
Sbjct: 2 MERGIVQYDFMAESQDELTIKSGDKVYIL-DDKKSKDWWMC 41
>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces
cerevisiae} SCOP: b.34.2.1
Length = 58
Score = 41.8 bits (99), Expect = 2e-06
Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 3/51 (5%)
Query: 47 VLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPT 97
VL Y + E+++ G ++ +V W + E GLVPT
Sbjct: 6 VLYAYVQKDDDEITITPGDKISLV-ARDTGSGWTKINNDTTGE--TGLVPT 53
Score = 32.5 bits (75), Expect = 0.006
Identities = 6/24 (25%), Positives = 13/24 (54%)
Query: 4 VLADYTAANTTELSVHKGQQVEVV 27
VL Y + E+++ G ++ +V
Sbjct: 6 VLYAYVQKDDDEITITPGDKISLV 29
>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2
domain, signaling protein; NMR {Homo sapiens}
Length = 72
Score = 42.3 bits (100), Expect = 2e-06
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 8/60 (13%)
Query: 39 GSGIEMTWVLA--DYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVP 96
+ E V+A DY A EL + K +++ ++ +S W VR S+ + G VP
Sbjct: 2 STMAEEVVVVAKFDYVAQQEQELDIKKNERLWLLDDS---KSWWRVRNSMNK---TGFVP 55
Score = 33.4 bits (77), Expect = 0.004
Identities = 8/30 (26%), Positives = 15/30 (50%), Gaps = 3/30 (10%)
Query: 7 DYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
DY A EL + K +++ ++ +S W
Sbjct: 15 DYVAQQEQELDIKKNERLWLLDDS---KSW 41
>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3
domain, phosphorylation; NMR {Mus musculus} SCOP:
b.34.2.1
Length = 67
Score = 41.8 bits (99), Expect = 2e-06
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 7/54 (12%)
Query: 45 TWVLA--DYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVP 96
V+A D+ AT +L + +GQ+ ++ + W R G EG +P
Sbjct: 3 EIVVAMYDFQATEAHDLRLERGQEYIILEKND--LHWWRARDKYGS---EGYIP 51
Score = 33.4 bits (77), Expect = 0.003
Identities = 8/37 (21%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Query: 2 TWVLA--DYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
V+A D+ A +L + +GQ+ ++ + W
Sbjct: 3 EIVVAMYDFQATEAHDLRLERGQEYIILEKND--LHW 37
>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 77
Score = 41.6 bits (98), Expect = 3e-06
Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 9/65 (13%)
Query: 39 GSGIEMTWVLA--DYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECS----- 91
SG + +A DY A +LS G +++V+ S W L R +
Sbjct: 2 SSGSSGQYFVALFDYQARTAEDLSFRAGDKLQVLDTSH--EGWWLARHLEKKGTGLGQQL 59
Query: 92 EGLVP 96
+G +P
Sbjct: 60 QGYIP 64
Score = 35.5 bits (82), Expect = 7e-04
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Query: 2 TWVLA--DYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
+ +A DY A +LS G +++V+ S W
Sbjct: 8 QYFVALFDYQARTAEDLSFRAGDKLQVLDTSH--EGW 42
>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding,
cell adhesion, cytoskeleton, LIPO magnesium, manganese,
metal-binding, myristate; 1.40A {Homo sapiens} PDB:
3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C*
2o88_A 1bbz_A 1awo_A
Length = 63
Score = 41.4 bits (98), Expect = 3e-06
Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Query: 47 VLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVP 96
L D+ A+ LS+ KG+++ V+ + +W + G +G VP
Sbjct: 10 ALYDFVASGDNTLSITKGEKLRVL-GYNHNGEWCEAQTKNG----QGWVP 54
Score = 36.0 bits (84), Expect = 4e-04
Identities = 9/33 (27%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 4 VLADYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
L D+ A+ LS+ KG+++ V+ + +W
Sbjct: 10 ALYDFVASGDNTLSITKGEKLRVL-GYNHNGEW 41
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK,
signal transduction, SH2, SH3, SRC homology, tyrosine
kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1
d.93.1.1 d.144.1.7 PDB: 1jeg_A
Length = 450
Score = 43.9 bits (104), Expect = 4e-06
Identities = 14/68 (20%), Positives = 28/68 (41%), Gaps = 9/68 (13%)
Query: 30 SSAPPDWALGSGIEMTWV-LADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGE 88
S+ W G+ + ++ T +L KG + +V + P+W + +G
Sbjct: 2 SAIQASWPSGT----ECIAKYNFHGTAEQDLPFCKGDVLTIVAVTK-DPNWYKAKNKVGR 56
Query: 89 ECSEGLVP 96
EG++P
Sbjct: 57 ---EGIIP 61
Score = 32.3 bits (74), Expect = 0.039
Identities = 6/30 (20%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 7 DYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
++ +L KG + +V + P+W
Sbjct: 19 NFHGTAEQDLPFCKGDVLTIVAVTK-DPNW 47
>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens}
Length = 68
Score = 40.7 bits (96), Expect = 5e-06
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 47 VLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVP 96
+ D+TA +L+ KG+ + V+ P W + + + G EGLVP
Sbjct: 15 AVGDFTAQQVGDLTFKKGEILLVIEKK--PDGWWIAKDAKGN---EGLVP 59
Score = 33.0 bits (76), Expect = 0.004
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 4 VLADYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
+ D+TA +L+ KG+ + V+ P W
Sbjct: 15 AVGDFTAQQVGDLTFKKGEILLVIEKK--PDGW 45
>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched
library, clone:9530076O17...; SH3_1 domain; NMR {Mus
musculus}
Length = 109
Score = 41.7 bits (98), Expect = 7e-06
Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Query: 28 HNSSAPPDWALGSGIEMTWVLA--DYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLS 85
S + G +T +A DY A T +LS KG++ +++ N++ W ++
Sbjct: 11 SFSVVSSSYPTGLTGGVTIFVALYDYEARTTEDLSFKKGERFQII-NNTEGDWWEARSIA 69
Query: 86 LGEECSEGLVP 96
G+ G +P
Sbjct: 70 TGK---SGYIP 77
Score = 32.4 bits (74), Expect = 0.013
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 5 LADYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
L DY A T +LS KG++ ++++N+ DW
Sbjct: 33 LYDYEARTTEDLSFKKGERFQIINNTE--GDW 62
>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 80
Score = 40.9 bits (96), Expect = 7e-06
Identities = 17/80 (21%), Positives = 26/80 (32%), Gaps = 9/80 (11%)
Query: 39 GSGIEMTWVLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVP-T 97
SG + Y +E+S G +V+V+ W VR EG P
Sbjct: 5 SSGATSYMTCSAYQKVQDSEISFPAGVEVQVLEKQ--ESGWWYVRFG-EL---EGWAPSH 58
Query: 98 CV--LKQPPPSVLRTATSPS 115
+ + P + PS
Sbjct: 59 YLVLDENEQPDPSGKESGPS 78
Score = 34.0 bits (78), Expect = 0.002
Identities = 7/33 (21%), Positives = 13/33 (39%), Gaps = 2/33 (6%)
Query: 4 VLADYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
+ Y +E+S G +V+V+ W
Sbjct: 13 TCSAYQKVQDSEISFPAGVEVQVLEKQ--ESGW 43
>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine
proteas; 1.40A {Synthetic construct} PDB: 4afz_C
4ag2_C* 4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A
1a0n_B 1fyn_A 1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C
1nlo_C* 1nlp_C* 1qwe_A 1qwf_A 1prl_C ...
Length = 84
Score = 40.8 bits (96), Expect = 7e-06
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Query: 40 SGIEMTWVLA--DYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVP 96
G +T +A DY AT T+LS HKG++ +++ P DW R E G +P
Sbjct: 2 RGSGVTLFVALYDYNATRWTDLSFHKGEKFQILEFG--PGDWWEARSLTTGE--TGYIP 56
Score = 35.8 bits (83), Expect = 6e-04
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Query: 1 MTWVLA--DYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
+T +A DY A T+LS HKG++ +++ P DW
Sbjct: 6 VTLFVALYDYNATRWTDLSFHKGEKFQILEFG--PGDW 41
>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR,
CDC42P-interacting, S signaling protein; NMR
{Lodderomyces elongisporus}
Length = 120
Score = 41.8 bits (98), Expect = 8e-06
Identities = 14/89 (15%), Positives = 34/89 (38%), Gaps = 6/89 (6%)
Query: 47 VLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPTC---VLKQP 103
L ++ A EL V G+ + + + +W + + + GLVP ++
Sbjct: 8 TLYEFKAERDDELDVSPGENLSICAHYD--YEWFIAKP-INRLGGPGLVPVSYVRIIDLM 64
Query: 104 PPSVLRTATSPSKRITLPIEQDLGRPGLD 132
P+ + + + + I + P ++
Sbjct: 65 DPAKYASVDTYDREQVMKIIDEFKIPTVE 93
Score = 34.5 bits (79), Expect = 0.003
Identities = 8/40 (20%), Positives = 16/40 (40%), Gaps = 2/40 (5%)
Query: 4 VLADYTAANTTELSVHKGQQVEVVHNSSAPPDWALGSGIE 43
L ++ A EL V G+ + + + +W + I
Sbjct: 8 TLYEFKAERDDELDVSPGENLSICAHYD--YEWFIAKPIN 45
>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic
protein NCK2; T-cell receptor, SH3 domain, immunology,
SH2 domain; NMR {Homo sapiens}
Length = 86
Score = 41.0 bits (96), Expect = 8e-06
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 8/56 (14%)
Query: 43 EMTWVLA--DYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVP 96
E V+A DYTA EL + K +++ ++ +S W VR + G VP
Sbjct: 30 EEVIVIAKWDYTAQQDQELDIKKNERLWLLDDSK---TWWRVRNAANR---TGYVP 79
Score = 32.1 bits (73), Expect = 0.014
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Query: 4 VLADYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
DYTA EL + K +++ ++ +S W
Sbjct: 36 AKWDYTAQQDQELDIKKNERLWLLDDSK---TW 65
>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418
protein, SH3MD1, SH3 multiple domains 1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 75
Score = 40.5 bits (95), Expect = 8e-06
Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 6/66 (9%)
Query: 31 SAPPDWALGSGIEMTWVLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEEC 90
S+ G+ ++ +ADY +G +EV+ + P W ++ G +
Sbjct: 2 SSGSS---GNLKDVYVSIADYEGDEE-TAGFQEGVSMEVLERN--PNGWWYCQILDGVKP 55
Query: 91 SEGLVP 96
+G VP
Sbjct: 56 FKGWVP 61
Score = 29.7 bits (67), Expect = 0.076
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 3/33 (9%)
Query: 4 VLADYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
+ADY + +G +EV+ + P W
Sbjct: 15 SIADYEG-DEETAGFQEGVSMEVLERN--PNGW 44
>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel,
ATP-binding, developmental protein, lipoprotein,
manganese, metal-binding; 1.60A {Gallus gallus} PDB:
2l2p_A
Length = 79
Score = 40.8 bits (96), Expect = 9e-06
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 50 DYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVP 96
DY A +LS HKG++ +++++S DW R E G +P
Sbjct: 13 DYEARTEDDLSFHKGEKFQILNSSE--GDWWEARSLTTGE--TGYIP 55
Score = 35.8 bits (83), Expect = 6e-04
Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 7 DYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
DY A +LS HKG++ +++++S DW
Sbjct: 13 DYEARTEDDLSFHKGEKFQILNSSE--GDW 40
>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3,
actin-binding, cytoplasm, cytoskeleton,
phosphorylation, SH3 domain, DNA damage, DNA repair,
nucleus; NMR {Saccharomyces cerevisiae}
Length = 71
Score = 40.3 bits (95), Expect = 1e-05
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 47 VLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVP 96
V D+ A + EL++ G +V ++ + DW + +L + GLVP
Sbjct: 11 VQYDFMAESQDELTIKSGDKVYIL-DDKKSKDWWMCQLVDSGK--SGLVP 57
Score = 35.7 bits (83), Expect = 6e-04
Identities = 9/33 (27%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 4 VLADYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
V D+ A + EL++ G +V ++ + DW
Sbjct: 11 VQYDFMAESQDELTIKSGDKVYIL-DDKKSKDW 42
>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 79
Score = 40.1 bits (94), Expect = 2e-05
Identities = 15/68 (22%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
Query: 31 SAPPDWALGSGIEMTWVLADYTATNTTELSVHKGQQVEVV--HNSSAPPDWALVRLSLGE 88
S+ + G ++ + + + A N ELSV Q+++++ + + +W L ++ G+
Sbjct: 2 SSGSSGSEAEGNQVYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVN-GK 60
Query: 89 ECSEGLVP 96
+G VP
Sbjct: 61 ---KGYVP 65
Score = 35.4 bits (82), Expect = 7e-04
Identities = 9/39 (23%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 4 VLADYTAANTTELSVHKGQQVEVV--HNSSAPPDWALGS 40
+ + A N ELSV Q+++++ + + +W L
Sbjct: 18 AVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAE 56
>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel,
transferase; HET: PG4; 1.76A {Homo sapiens} PDB: 3h0i_A
3h0f_A*
Length = 73
Score = 39.6 bits (93), Expect = 2e-05
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
Query: 31 SAPPDWALGSGIEMTWVLA--DYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGE 88
S G +T +A DY A +LS HKG++ +++++S DW R
Sbjct: 2 SMTGTLRTRGGTGVTLFVALYDYEAITEDDLSFHKGEKFQILNSSE--GDWWEARSLTTG 59
Query: 89 ECSEGLVP 96
E G +P
Sbjct: 60 E--TGYIP 65
Score = 35.4 bits (82), Expect = 7e-04
Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 7 DYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
DY A +LS HKG++ +++++S DW
Sbjct: 23 DYEAITEDDLSFHKGEKFQILNSSE--GDW 50
>1ug1_A KIAA1010 protein; structural genomics, SH3 domain, hypothetical
protein BAA76854.1, riken structural genomics/proteomics
initiative RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 92
Score = 39.2 bits (91), Expect = 4e-05
Identities = 14/73 (19%), Positives = 28/73 (38%), Gaps = 8/73 (10%)
Query: 47 VLADYTATNTTELSVHKGQQVEVVHNS--SAPPDWALVRLSLGEECSEGLVPTCVLK--Q 102
++ A ++S+ +G V V+ + L+ ++G V + LK
Sbjct: 22 AERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLID----NGVTKGFVYSSFLKPYN 77
Query: 103 PPPSVLRTATSPS 115
P S ++ PS
Sbjct: 78 PRRSHSDASSGPS 90
Score = 31.9 bits (72), Expect = 0.023
Identities = 9/51 (17%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Query: 4 VLADYTAANTTELSVHKGQQVEVVHNSSAPPD---WALGSGIEMTWVLADY 51
++ AA ++S+ +G V V+ W + +G+ +V + +
Sbjct: 22 AERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNGVTKGFVYSSF 72
>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput,
structural genomics, contractIle protein; 1.80A
{Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A
Length = 69
Score = 38.4 bits (90), Expect = 5e-05
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 47 VLADYTAT-NTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPT 97
D+ + +++EL + KG V + + P W+L +L G + EG VPT
Sbjct: 7 AAYDFPGSGSSSELPLKKGDIVFISRDE--PSGWSLAKLLDGSK--EGWVPT 54
Score = 31.1 bits (71), Expect = 0.026
Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 6/54 (11%)
Query: 4 VLADYTA-ANTTELSVHKGQQVEVVHNSSAPPDWALG---SGIEMTWVLADYTA 53
D+ +++EL + KG V + + P W+L G + WV Y
Sbjct: 7 AAYDFPGSGSSSELPLKKGDIVFISRDE--PSGWSLAKLLDGSKEGWVPTAYMT 58
>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6,
ATP-binding, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein, polymorphism; NMR {Homo sapiens}
Length = 72
Score = 38.1 bits (89), Expect = 6e-05
Identities = 13/50 (26%), Positives = 17/50 (34%), Gaps = 3/50 (6%)
Query: 48 LADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRL-SLGEECSEGLVP 96
L D+ + ELS G V W L G ++G VP
Sbjct: 16 LWDFKSRTDEELSFRAGDVFHVARKE--EQWWWATLLDEAGGAVAQGYVP 63
Score = 32.7 bits (75), Expect = 0.006
Identities = 8/32 (25%), Positives = 10/32 (31%), Gaps = 2/32 (6%)
Query: 5 LADYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
L D+ + ELS G V W
Sbjct: 16 LWDFKSRTDEELSFRAGDVFHVARKE--EQWW 45
>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 71
Score = 38.1 bits (89), Expect = 6e-05
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
Query: 40 SGIEMTWVLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVP 96
SG E + YT+ + E+ KG VEV+ + W +R G+ EG P
Sbjct: 6 SGEEKYVTVQPYTSQSKDEIGFEKGVTVEVIRKN--LEGWWYIRYL-GK---EGWAP 56
Score = 35.0 bits (81), Expect = 8e-04
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 4 VLADYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
+ YT+ + E+ KG VEV+ + W
Sbjct: 13 TVQPYTSQSKDEIGFEKGVTVEVIRKN--LEGW 43
>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL,
SH3 domain, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 81
Score = 38.5 bits (90), Expect = 6e-05
Identities = 14/68 (20%), Positives = 25/68 (36%), Gaps = 4/68 (5%)
Query: 29 NSSAPPDWALGSGIEMTWVLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGE 88
+S P G + ++T EL+ KG V ++ + W V+
Sbjct: 5 SSGRMPTRRWAPGTQCI-TKCEHTRPKPGELAFRKGDVVTIL-EACENKSWYRVKHHTSG 62
Query: 89 ECSEGLVP 96
+ EGL+
Sbjct: 63 Q--EGLLA 68
Score = 30.1 bits (68), Expect = 0.070
Identities = 7/30 (23%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 7 DYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
++T EL+ KG V ++ + W
Sbjct: 25 EHTRPKPGELAFRKGDVVTIL-EACENKSW 53
>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13,
protein-protein interaction, structural genomics; NMR
{Mus musculus}
Length = 93
Score = 38.2 bits (89), Expect = 9e-05
Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 8/72 (11%)
Query: 29 NSSAPPDWALGSGIEMTWVLA--DYTATNTTELSVHKGQQVEVV--HNSSAPPDWALVRL 84
+ S+ +WA G + A D+ A + E+S G + + W L L
Sbjct: 3 SGSSGTNWASGED-DHVVARAEYDFVAVSDEEISFRAGDMLNLALKEQQPKVRGWLLASL 61
Query: 85 SLGEECSEGLVP 96
+ GL+P
Sbjct: 62 DGQ---TTGLIP 70
Score = 35.2 bits (81), Expect = 0.001
Identities = 8/36 (22%), Positives = 13/36 (36%), Gaps = 2/36 (5%)
Query: 7 DYTAANTTELSVHKGQQVEVV--HNSSAPPDWALGS 40
D+ A + E+S G + + W L S
Sbjct: 25 DFVAVSDEEISFRAGDMLNLALKEQQPKVRGWLLAS 60
>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.01A {Caenorhabditis elegans}
Length = 174
Score = 39.4 bits (91), Expect = 1e-04
Identities = 19/96 (19%), Positives = 36/96 (37%), Gaps = 7/96 (7%)
Query: 3 WVLADYTAANTTELSVHKGQQVEVVHNSSAPPDWALGSGIEMTWVLA--DYTATNTTELS 60
A AN + + + + A + V+ +T T+L
Sbjct: 77 TAAAGVKIANQSFPDIPALLNHFKMRVLTEASLLAAYKKPIIEVVVGTFKFTGERETDLP 136
Query: 61 VHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVP 96
+G+++E++ ++ DW R +LG GLVP
Sbjct: 137 FEQGERLEILSKTN--QDWWEARNALGT---TGLVP 167
>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding,
signaling, HCK SH3 domain, PR binding; 3.45A {Homo
sapiens}
Length = 90
Score = 37.8 bits (88), Expect = 1e-04
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 5/50 (10%)
Query: 47 VLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVP 96
L DY + + +LS KG Q+ V+ S +W R + EG +P
Sbjct: 8 ALYDYVSWSPDDLSFQKGDQMVVLEES---GEWWKARSLATRK--EGYIP 52
Score = 31.6 bits (72), Expect = 0.023
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 4 VLADYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
L DY + + +LS KG Q+ V+ S +W
Sbjct: 8 ALYDYVSWSPDDLSFQKGDQMVVLEES---GEW 37
>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide);
1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A
1m30_A 1m3b_A 1m3a_A
Length = 57
Score = 37.1 bits (87), Expect = 1e-04
Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 7/53 (13%)
Query: 46 WVLA--DYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVP 96
+V A D+ + +L KG + + W S G+ G++P
Sbjct: 3 YVRALFDFNGNDEEDLPFKKGDILRIRDKPE--EQWWNAEDSEGK---RGMIP 50
Score = 32.5 bits (75), Expect = 0.005
Identities = 7/36 (19%), Positives = 13/36 (36%), Gaps = 4/36 (11%)
Query: 3 WVLA--DYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
+V A D+ + +L KG + + W
Sbjct: 3 YVRALFDFNGNDEEDLPFKKGDILRIRDKPE--EQW 36
>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural
protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A
2kr3_A
Length = 65
Score = 37.3 bits (87), Expect = 1e-04
Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 8/57 (14%)
Query: 46 WVLA--DYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECS----EGLVP 96
VLA DY + E+++ KG + ++++++ DW V + + +G VP
Sbjct: 3 LVLALYDYQEKSPREVTMKKGDILTLLNSTN--KDWWKVEVKITVNGKTYERQGFVP 57
Score = 33.5 bits (77), Expect = 0.003
Identities = 10/36 (27%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 3 WVLA--DYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
VLA DY + E+++ KG + ++++++ DW
Sbjct: 3 LVLALYDYQEKSPREVTMKKGDILTLLNSTN--KDW 36
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase,
phosphorylation, SH2, SH3, phosphotyrosine,
proto-oncogene, phosphotransferase; HET: PTR; 1.50A
{Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB:
1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B*
3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A*
3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Length = 452
Score = 39.7 bits (93), Expect = 1e-04
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 6/48 (12%)
Query: 50 DYTATNTTELSVHKGQQVEVVHNSSAPPDWALVR-LSLGEECSEGLVP 96
DY + T+LS KG+++++V+N+ DW L LS G+ G +P
Sbjct: 10 DYESRTETDLSFKKGERLQIVNNT--EGDWWLAHSLSTGQ---TGYIP 52
Score = 32.8 bits (75), Expect = 0.033
Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 7/51 (13%)
Query: 7 DYTAANTTELSVHKGQQVEVVHNSSAPPDW----ALGSGIEMTWVLADYTA 53
DY + T+LS KG+++++V+N+ DW +L +G ++ ++Y A
Sbjct: 10 DYESRTETDLSFKKGERLQIVNNT--EGDWWLAHSLSTGQTG-YIPSNYVA 57
>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus}
Length = 81
Score = 37.4 bits (87), Expect = 1e-04
Identities = 23/80 (28%), Positives = 31/80 (38%), Gaps = 7/80 (8%)
Query: 30 SSAPPDWALGSGIEMTWVLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEE 89
SS D S VL DY A N+TELS+ + + V DW + +
Sbjct: 5 SSGLNDLKESSNNRKARVLYDYDAANSTELSLLADEVITVFSVVGMDSDWLMGERG-NQ- 62
Query: 90 CSEGLVPTC---VLKQPPPS 106
+G VP +L P S
Sbjct: 63 --KGKVPITYLELLNSGPSS 80
Score = 36.6 bits (85), Expect = 3e-04
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 4 VLADYTAANTTELSVHKGQQVEVVHNSSAPPDWALG 39
VL DY AAN+TELS+ + + V DW +G
Sbjct: 22 VLYDYDAANSTELSLLADEVITVFSVVGMDSDWLMG 57
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1;
transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Length = 495
Score = 39.4 bits (92), Expect = 2e-04
Identities = 17/82 (20%), Positives = 31/82 (37%), Gaps = 7/82 (8%)
Query: 17 SVHKGQQVEVVHNSSAPPDWALGSGIEMTWVLA--DYTATNTTELSVHKGQQVEVVHNSS 74
E +S A S + +A D+ A+ LS+ KG+++ V+ +
Sbjct: 16 DFEPQGLSEAARWNSKENLLAGPSENDPNLFVALYDFVASGDNTLSITKGEKLRVL-GYN 74
Query: 75 APPDWALVRLSLGEECSEGLVP 96
+W + G +G VP
Sbjct: 75 HNGEWCEAQTKNG----QGWVP 92
Score = 32.1 bits (73), Expect = 0.052
Identities = 9/32 (28%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 5 LADYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
L D+ A+ LS+ KG+++ V+ + +W
Sbjct: 49 LYDFVASGDNTLSITKGEKLRVL-GYNHNGEW 79
>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.52A {Caenorhabditis elegans}
Length = 308
Score = 39.4 bits (91), Expect = 2e-04
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 47 VLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVP 96
+T T+L +G+++E++ ++ DW R +LG GLVP
Sbjct: 152 GTFKFTGERETDLPFEQGERLEILSKTN--QDWWEARNALGT---TGLVP 196
Score = 32.5 bits (73), Expect = 0.031
Identities = 7/36 (19%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 4 VLADYTAANTTELSVHKGQQVEVVHNSSAPPDWALG 39
+T T+L +G+++E++ ++ DW
Sbjct: 152 GTFKFTGERETDLPFEQGERLEILSKTN--QDWWEA 185
Score = 25.6 bits (55), Expect = 7.4
Identities = 19/98 (19%), Positives = 27/98 (27%), Gaps = 8/98 (8%)
Query: 1 MTWVLADYTAANTTELSVHKGQQVEVVHNSSAPPDWALGSGIEMTWVLADYTATNT--TE 58
A+ ++ S G + ++S+ V D T+
Sbjct: 206 FHNDRTSKGASQSSIGSSGGGAERFSSASTSSDNIELQPRLPAKAKVTFDRVPNAYDPTQ 265
Query: 59 LSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVP 96
L V KGQ V V S L G VP
Sbjct: 266 LRVKKGQTVLVTQKMS--NGMYKAELD----GQIGSVP 297
>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 85
Score = 37.4 bits (87), Expect = 2e-04
Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 10/52 (19%)
Query: 30 SSAPPDWALGSGIEMTWVLA--DYTATNTTELSVHKGQQVEVVHNSSAPPDW 79
SS +V+A Y N + LS H+G ++++ ++ P W
Sbjct: 2 SSGSSG--------SGYVIALRSYITDNCSLLSFHRGDLIKLLPVATLEPGW 45
Score = 36.3 bits (84), Expect = 4e-04
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 5 LADYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
L Y N + LS H+G ++++ ++ P W
Sbjct: 14 LRSYITDNCSLLSFHRGDLIKLLPVATLEPGW 45
>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine
kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A
4hck_A 5hck_A
Length = 86
Score = 37.0 bits (86), Expect = 2e-04
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
Query: 28 HNSSAPPDWALGSGIEMTWVLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLG 87
HNS+ P GS + L DY A + +LS KG Q+ V+ S +W R
Sbjct: 11 HNSNTPGIREAGSEDIIVVALYDYEAIHHEDLSFQKGDQMVVLEES---GEWWKARSLAT 67
Query: 88 EECSEGLVP 96
+ EG +P
Sbjct: 68 RK--EGYIP 74
Score = 30.5 bits (69), Expect = 0.057
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Query: 7 DYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
DY A + +LS KG Q+ V+ S +W
Sbjct: 33 DYEAIHHEDLSFQKGDQMVVLEES---GEW 59
>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction
adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1
d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A
Length = 217
Score = 38.9 bits (90), Expect = 2e-04
Identities = 19/89 (21%), Positives = 34/89 (38%), Gaps = 10/89 (11%)
Query: 47 VLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPTCVLKQPPPS 106
D+ AT ELS +G ++V+ N +W L+ +G +P ++ P
Sbjct: 5 AKYDFKATADDELSFKRGDILKVL-NEECDQNWYKAELN----GKDGFIPKNYIEMKPHP 59
Query: 107 VLRTATSPSKRITLPIEQDLGRPGLDKSF 135
+K E+ L + D +F
Sbjct: 60 WFFGKIPRAKA-----EEMLSKQRHDGAF 83
Score = 33.9 bits (77), Expect = 0.012
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 4 VLADYTAANTTELSVHKGQQVEVVHNSSAPPDWALGS 40
D+ A ELS +G ++V+ N +W
Sbjct: 5 AKYDFKATADDELSFKRGDILKVL-NEECDQNWYKAE 40
Score = 28.1 bits (62), Expect = 1.0
Identities = 17/95 (17%), Positives = 29/95 (30%), Gaps = 7/95 (7%)
Query: 3 WVLADYTAANTTELSVH-KGQQVEVVHNSSAPPDWALGSGIEMTWVLADYTATNTTELSV 61
+ L + EL + + V + L D+ EL
Sbjct: 118 YFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQPTYVQALFDFDPQEDGELGF 177
Query: 62 HKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVP 96
+G + V+ NS P+W G+ G+ P
Sbjct: 178 RRGDFIHVMDNSD--PNWWKGACH-GQ---TGMFP 206
>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A
{Saccharomyces cerevisiae} PDB: 1yp5_A
Length = 58
Score = 36.0 bits (84), Expect = 3e-04
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Query: 47 VLADYTAT-NTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPT 97
D+ + + +EL + KG + + P W+L +L G + EG VPT
Sbjct: 5 AAYDFPGSGSPSELPLKKGDVIYITREE--PSGWSLGKLLDGSK--EGWVPT 52
Score = 30.3 bits (69), Expect = 0.034
Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 6/53 (11%)
Query: 4 VLADYTA-ANTTELSVHKGQQVEVVHNSSAPPDWALG---SGIEMTWVLADYT 52
D+ + +EL + KG + + P W+LG G + WV Y
Sbjct: 5 AAYDFPGSGSPSELPLKKGDVIYITREE--PSGWSLGKLLDGSKEGWVPTAYM 55
>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm,
cytoskeleton, SH3 domain, SIG protein; NMR
{Saccharomyces cerevisiae} PDB: 2rqw_A
Length = 108
Score = 37.1 bits (86), Expect = 3e-04
Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 47 VLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPT 97
VL D+ A EL+ + G+ + + + + +W + + +G GLVP
Sbjct: 10 VLYDFKAEKADELTTYVGENLFICAHHN--CEWFIAKP-IGRLGGPGLVPV 57
Score = 32.4 bits (74), Expect = 0.015
Identities = 9/40 (22%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 4 VLADYTAANTTELSVHKGQQVEVVHNSSAPPDWALGSGIE 43
VL D+ A EL+ + G+ + + + + +W + I
Sbjct: 10 VLYDFKAEKADELTTYVGENLFICAHHN--CEWFIAKPIG 47
>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein,
phosphorylation, SH3 domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 78
Score = 36.2 bits (84), Expect = 3e-04
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 30 SSAPPDWALGSGIEMTWVLADYTATNTTELSVHKGQQVEVVHNSSAPPDW 79
SS P WA S +E + DYT ELS +G + V+ W
Sbjct: 5 SSGDPPWAPRSYLEKVVAIYDYTKDKEDELSFQEGAIIYVI--KKNDDGW 52
Score = 29.2 bits (66), Expect = 0.13
Identities = 9/30 (30%), Positives = 12/30 (40%), Gaps = 2/30 (6%)
Query: 7 DYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
DYT ELS +G + V+ W
Sbjct: 25 DYTKDKEDELSFQEGAIIYVI--KKNDDGW 52
>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors,
peptoids, protein-protein recognition, proline-rich
motifs, signal transduction; 2.50A {Mus musculus} SCOP:
b.34.2.1
Length = 65
Score = 35.7 bits (83), Expect = 5e-04
Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 7/54 (12%)
Query: 45 TWVLA--DYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVP 96
+V A D+ + +L KG + + W S G+ G++P
Sbjct: 4 EYVRALFDFNGNDEEDLPFKKGDILRIRDKPE--EQWWNAEDSEGK---RGMIP 52
Score = 32.2 bits (74), Expect = 0.009
Identities = 7/37 (18%), Positives = 13/37 (35%), Gaps = 4/37 (10%)
Query: 2 TWVLA--DYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
+V A D+ + +L KG + + W
Sbjct: 4 EYVRALFDFNGNDEEDLPFKKGDILRIRDKPE--EQW 38
>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3
domain, PEST phosphatase-interacting protein 1, CD2-
binding protein 1; NMR {Homo sapiens}
Length = 69
Score = 35.7 bits (83), Expect = 6e-04
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
Query: 40 SGIEMTWVLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVP 96
SG + L DYTA N EL + G +EV+ W V + G+ G VP
Sbjct: 6 SGAQEYRALYDYTAQNPDELDLSAGDILEVI--LEGEDGWWTVERN-GQ---RGFVP 56
Score = 34.5 bits (80), Expect = 0.001
Identities = 12/37 (32%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 4 VLADYTAANTTELSVHKGQQVEVVHNSSAPPDWALGS 40
L DYTA N EL + G +EV+ W
Sbjct: 13 ALYDYTAQNPDELDLSAGDILEVI--LEGEDGWWTVE 47
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor
complex, DOWN-regulated kinase, ordered activation
loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1
d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A*
2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Length = 454
Score = 37.8 bits (88), Expect = 6e-04
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 8/62 (12%)
Query: 37 ALGSGIEMTWV-LADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVR-LSLGEECSEGL 94
A+GSGI + V L DY A + +LS KG Q+ V+ S +W R L+ + EG
Sbjct: 2 AMGSGIRIIVVALYDYEAIHHEDLSFQKGDQMVVLEES---GEWWKARSLATRK---EGY 55
Query: 95 VP 96
+P
Sbjct: 56 IP 57
Score = 28.9 bits (65), Expect = 0.57
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Query: 7 DYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
DY A + +LS KG Q+ V+ S +W
Sbjct: 16 DYEAIHHEDLSFQKGDQMVVLEES---GEW 42
>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein;
1.08A {Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A
1h8k_A 2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A
1hd3_A 2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A
...
Length = 62
Score = 35.3 bits (82), Expect = 7e-04
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 8/56 (14%)
Query: 43 EMTWVLA--DYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVP 96
VL DY + EL+V KG + ++++++ DW + ++ G +G VP
Sbjct: 5 GKELVLVLYDYQEKSPRELTVKKGDILTLLNSTN--KDWWKIEVN-GR---QGFVP 54
Score = 34.1 bits (79), Expect = 0.002
Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Query: 2 TWVLA--DYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
VL DY + EL+V KG + ++++++ DW
Sbjct: 7 ELVLVLYDYQEKSPRELTVKKGDILTLLNSTN--KDW 41
>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 68
Score = 35.3 bits (82), Expect = 7e-04
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Query: 39 GSGIEMTWVLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVP 96
GS E +ADY AT+ T+LS +G+++ ++ ++ DW + G G +P
Sbjct: 4 GSSGEEFVAIADYAATDETQLSFLRGEKILILRQTT--ADWWWGERA-GC---CGYIP 55
Score = 34.5 bits (80), Expect = 0.001
Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 5 LADYTAANTTELSVHKGQQVEVVHNSSAPPDWALGS 40
+ADY A + T+LS +G+++ ++ ++ DW G
Sbjct: 13 IADYAATDETQLSFLRGEKILILRQTT--ADWWWGE 46
>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels,
signaling protein; HET: PG4; 1.00A {Homo sapiens} SCOP:
b.34.2.1 PDB: 1h92_A 1kik_A
Length = 62
Score = 35.0 bits (81), Expect = 8e-04
Identities = 11/50 (22%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
Query: 47 VLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVP 96
L Y ++ +L KG+Q+ ++ S +W + + EG +P
Sbjct: 11 ALHSYEPSHDGDLGFEKGEQLRILEQS---GEWWKAQSLTTGQ--EGFIP 55
Score = 31.5 bits (72), Expect = 0.017
Identities = 8/33 (24%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Query: 4 VLADYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
L Y ++ +L KG+Q+ ++ S +W
Sbjct: 11 ALHSYEPSHDGDLGFEKGEQLRILEQS---GEW 40
>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural
protein; 1.70A {Rattus norvegicus}
Length = 73
Score = 35.0 bits (81), Expect = 0.001
Identities = 11/42 (26%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 38 LGSGIEMTWVLADYTATNTTELSVHKGQQVEVVHNSSAPPDW 79
+G+G E+ L DY + E+++ KG + ++++++ DW
Sbjct: 1 MGTGKELVLALYDYQEKSPREVTMKKGDILTLLNSTN--KDW 40
Score = 32.7 bits (75), Expect = 0.006
Identities = 10/37 (27%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Query: 2 TWVLA--DYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
VLA DY + E+++ KG + ++++++ DW
Sbjct: 6 ELVLALYDYQEKSPREVTMKKGDILTLLNSTN--KDW 40
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase,
transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7
Length = 535
Score = 37.2 bits (86), Expect = 0.001
Identities = 23/97 (23%), Positives = 37/97 (38%), Gaps = 7/97 (7%)
Query: 10 AANTTELSVHKGQQVEVVHNSSAPPDWALGSGIEMTWVLADYTATNTTELSVHKGQQVEV 69
A E + G S G L DY + T+LS KG+++++
Sbjct: 54 APAAAEPKLFGGFNSSDTVTSPQRAGPLAGGVTTFV-ALYDYESRTETDLSFKKGERLQI 112
Query: 70 VHNSSAPPDWALVR-LSLGEECSEGLVPTCVLKQPPP 105
V+N+ DW L LS G+ G +P+ +
Sbjct: 113 VNNT--EGDWWLAHSLSTGQ---TGYIPSNYVAPSDS 144
Score = 28.7 bits (64), Expect = 0.68
Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 5 LADYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
L DY + T+LS KG+++++V+N+ DW
Sbjct: 91 LYDYESRTETDLSFKKGERLQIVNNT--EGDW 120
>1w1f_A Tyrosine-protein kinase LYN; SH3-domain, SH3 domain, tyrosine
kinase, signal transduction; NMR {Homo sapiens} PDB:
1wa7_A
Length = 65
Score = 34.6 bits (80), Expect = 0.001
Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Query: 48 LADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVP 96
L Y + +LS KG++++V+ +W + L ++ EG +P
Sbjct: 13 LYPYDGIHPDDLSFKKGEKMKVLEEHG---EWWKAKSLLTKK--EGFIP 56
Score = 30.7 bits (70), Expect = 0.031
Identities = 8/32 (25%), Positives = 16/32 (50%), Gaps = 3/32 (9%)
Query: 5 LADYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
L Y + +LS KG++++V+ +W
Sbjct: 13 LYPYDGIHPDDLSFKKGEKMKVLEEHG---EW 41
>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling
protein; 2.05A {Homo sapiens} PDB: 2k6d_A
Length = 69
Score = 34.5 bits (80), Expect = 0.001
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 47 VLADYTATNTTELSVHKGQQVEVVHNSSAPPDW 79
V+ Y A N EL++ +G V +++ W
Sbjct: 7 VIFPYEAQNDDELTIKEGDIVTLINKDCIDVGW 39
Score = 33.8 bits (78), Expect = 0.002
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 4 VLADYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
V+ Y A N EL++ +G V +++ W
Sbjct: 7 VIFPYEAQNDDELTIKEGDIVTLINKDCIDVGW 39
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative
splicing, coiled coil, cytoplasmic vesicle, endocytosis,
phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Length = 486
Score = 36.7 bits (83), Expect = 0.001
Identities = 14/51 (27%), Positives = 19/51 (37%), Gaps = 4/51 (7%)
Query: 47 VLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPT 97
L DY ELS G ++ + + W RL G+ GL P
Sbjct: 433 ALYDYEGQEHDELSFKAGDELTKMEDED-EQGWCKGRLDNGQ---VGLYPA 479
Score = 29.7 bits (65), Expect = 0.35
Identities = 9/37 (24%), Positives = 13/37 (35%), Gaps = 1/37 (2%)
Query: 4 VLADYTAANTTELSVHKGQQVEVVHNSSAPPDWALGS 40
L DY ELS G ++ + + W G
Sbjct: 433 ALYDYEGQEHDELSFKAGDELTKMEDED-EQGWCKGR 468
>2v1r_A Peroxisomal membrane protein PAS20; protein transport,
translocation, transmembrane, peptide COM structural
genomics, peroxisome; 2.1A {Saccharomyces cerevisiae}
SCOP: b.34.2.1
Length = 80
Score = 34.7 bits (80), Expect = 0.002
Identities = 18/73 (24%), Positives = 27/73 (36%), Gaps = 10/73 (13%)
Query: 28 HNSSAPPDWALGSGIEMTWVLADYTATNT-TELSVHKGQQVEVVHNS---SAPPDWALVR 83
S P D S +E L D+ N E+++ KG + ++ DW VR
Sbjct: 3 EFGSEPID---PSKLEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVR 59
Query: 84 LSLGEECSEGLVP 96
G G +P
Sbjct: 60 TKNGN---IGYIP 69
Score = 27.4 bits (61), Expect = 0.67
Identities = 7/34 (20%), Positives = 14/34 (41%), Gaps = 4/34 (11%)
Query: 7 DYTAANT-TELSVHKGQQVEVVHNS---SAPPDW 36
D+ N E+++ KG + ++ DW
Sbjct: 22 DFVPENPEMEVALKKGDLMAILSKKDPLGRDSDW 55
>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm,
phosphorylation, SH3-binding, signaling protein; NMR
{Mus musculus} PDB: 2kro_A
Length = 64
Score = 34.1 bits (79), Expect = 0.002
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 47 VLADYTATNTTELSVHKGQQVEVVHNSSAPPDW 79
L YT TN EL+ +G+ + ++ + W
Sbjct: 11 TLFPYTGTNEDELTFREGEIIHLISKETGEAGW 43
Score = 33.0 bits (76), Expect = 0.004
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 4 VLADYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
L YT N EL+ +G+ + ++ + W
Sbjct: 11 TLFPYTGTNEDELTFREGEIIHLISKETGEAGW 43
>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2,
signal transduction, adapter molecule, signaling
protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A
2eyw_A
Length = 230
Score = 36.0 bits (82), Expect = 0.002
Identities = 18/114 (15%), Positives = 29/114 (25%), Gaps = 6/114 (5%)
Query: 5 LADYTAANTTELSVHKGQQVEVVHNSSAPPDWALGSGIEMTWVLADYTATNTTELSVHKG 64
L V + E L D+ + +L KG
Sbjct: 99 LPALLEFYKIHYLDTTTLIEPVSRSRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKG 158
Query: 65 QQVEVVHNSSAPPDWALVRLSLGEECSEGLVP-TCVLKQPPPSVLRTATSPSKR 117
+ + W S G+ G++P V K P S +A +
Sbjct: 159 DILRIRDKPE--EQWWNAEDSEGK---RGMIPVPYVEKYRPASASVSALIGGNQ 207
Score = 27.9 bits (61), Expect = 1.3
Identities = 6/37 (16%), Positives = 11/37 (29%), Gaps = 2/37 (5%)
Query: 3 WVLADYTAANTTELSVHKGQQVEVVHNSSAPPDWALG 39
L D+ + +L KG + + W
Sbjct: 140 RALFDFNGNDEEDLPFKKGDILRIRDKPE--EQWWNA 174
>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 70
Score = 34.2 bits (79), Expect = 0.002
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 39 GSGIEMTWVLADYTATNTTELSVHKGQQVEVVHNSSAPPDW 79
GS + V+ Y A N EL++ +G V +++ W
Sbjct: 4 GSSGDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGW 44
Score = 33.4 bits (77), Expect = 0.003
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 4 VLADYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
V+ Y A N EL++ +G V +++ W
Sbjct: 12 VIFPYEAQNDDELTIKEGDIVTLINKDCIDVGW 44
>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase,
oxidoreductase; HET: CAF; 3.15A {Homo sapiens}
Length = 341
Score = 36.1 bits (82), Expect = 0.002
Identities = 21/143 (14%), Positives = 42/143 (29%), Gaps = 9/143 (6%)
Query: 1 MTWVLADYTAANTTELSVHKGQQVEVVHNSSAPPDWALGSGIEMTWVLADYTATNTTELS 60
+ + L + + +V S + L D+T + EL+
Sbjct: 134 FFYQSPYDSEQVPQALRRLRPRTRKVKSVSPQGNSVDRMAAPRAE-ALFDFTGNSKLELN 192
Query: 61 VHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPTCVLKQPPPSVLRTATSPSKRITL 120
G + ++ S DW + + G+ P +K P+ +
Sbjct: 193 FKAGDVIFLL--SRINKDWLEGTVRG----ATGIFPLSFVKILKD--FPEEDDPTNWLRC 244
Query: 121 PIEQDLGRPGLDKSFYGDRQTTP 143
+D D + D +TP
Sbjct: 245 YYYEDTISTIKDIAVEEDLSSTP 267
>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine
kinase, signal transduction, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 34.4 bits (79), Expect = 0.002
Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Query: 29 NSSAPPDWALGSGIEMTWVLADYTATNTTELSVHKGQQVEVVHNSSAPPDW 79
SS P L +V +Y A ELS+ KG +V V+ W
Sbjct: 4 GSSGDPGERLYDLNMPAYVKFNYMAEREDELSLIKGTKVIVM--EKCSDGW 52
Score = 30.1 bits (68), Expect = 0.085
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 4 VLADYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
V +Y A ELS+ KG +V V+ W
Sbjct: 22 VKFNYMAEREDELSLIKGTKVIVM--EKCSDGW 52
>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 73
Score = 33.8 bits (78), Expect = 0.002
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 50 DYTATNTTELSVHKGQQVEVVHNSSAPPDW 79
++ A + ELS+ +G V + W
Sbjct: 15 NFAARDMRELSLREGDVVRIYSRIGGDQGW 44
Score = 33.1 bits (76), Expect = 0.004
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 7 DYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
++ A + ELS+ +G V + W
Sbjct: 15 NFAARDMRELSLREGDVVRIYSRIGGDQGW 44
>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor
protein, downregulation, CBL, apoptosis, junction,
cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens}
Length = 73
Score = 33.8 bits (78), Expect = 0.003
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 47 VLADYTATNTTELSVHKGQQVEVVHNSSAPPDW 79
V+ Y A N EL++ +G V +++ W
Sbjct: 14 VIFPYEAQNDDELTIKEGDIVTLINKDCIDVGW 46
Score = 33.1 bits (76), Expect = 0.004
Identities = 10/37 (27%), Positives = 17/37 (45%)
Query: 4 VLADYTAANTTELSVHKGQQVEVVHNSSAPPDWALGS 40
V+ Y A N EL++ +G V +++ W G
Sbjct: 14 VIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGE 50
>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 33.9 bits (78), Expect = 0.003
Identities = 8/50 (16%), Positives = 17/50 (34%)
Query: 30 SSAPPDWALGSGIEMTWVLADYTATNTTELSVHKGQQVEVVHNSSAPPDW 79
SS + L + +L+ G ++ V+ + + DW
Sbjct: 5 SSGHERVGNLNQPIEVTALYSFEGQQPGDLNFQAGDRITVISKTDSHFDW 54
Score = 32.4 bits (74), Expect = 0.010
Identities = 5/30 (16%), Positives = 13/30 (43%)
Query: 7 DYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
+ +L+ G ++ V+ + + DW
Sbjct: 25 SFEGQQPGDLNFQAGDRITVISKTDSHFDW 54
>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring
finger 2 containing protein, NPPSFA; NMR {Mus musculus}
Length = 70
Score = 33.3 bits (77), Expect = 0.004
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 39 GSGIEMTWVLADYTATNTTELSVHKGQQVEVVHNSSAPPDW 79
GS M L Y+A EL + KG+ + V+ W
Sbjct: 4 GSSGNMFVALHTYSAHRPEELDLQKGEGIRVLGKYQ--DGW 42
Score = 31.0 bits (71), Expect = 0.028
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 4 VLADYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
L Y+A EL + KG+ + V+ W
Sbjct: 12 ALHTYSAHRPEELDLQKGEGIRVLGKYQ--DGW 42
>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 68
Score = 33.3 bits (77), Expect = 0.004
Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 7/69 (10%)
Query: 39 GSGIEMTWVLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPTC 98
GS E VL + EL V G V V+ +WA V + G+ +GLVP
Sbjct: 4 GSSGEAHRVLFGFVPETKEELQVMPGNIVFVL--KKGNDNWATVMFN-GQ---KGLVPCN 57
Query: 99 -VLKQPPPS 106
+ PS
Sbjct: 58 YLEPVSGPS 66
Score = 32.9 bits (76), Expect = 0.006
Identities = 10/37 (27%), Positives = 13/37 (35%), Gaps = 2/37 (5%)
Query: 4 VLADYTAANTTELSVHKGQQVEVVHNSSAPPDWALGS 40
VL + EL V G V V+ +WA
Sbjct: 12 VLFGFVPETKEELQVMPGNIVFVL--KKGNDNWATVM 46
>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel
beta sheets, structural protein; 2.30A {Gallus gallus}
SCOP: b.34.2.1
Length = 83
Score = 33.5 bits (77), Expect = 0.005
Identities = 14/68 (20%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
Query: 29 NSSAPPDWALGSGIEMTWVLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGE 88
+ + +G E+ L DY + E+++ KG + ++++++ DW V ++
Sbjct: 4 SHHHHHHGSDETGKELVLALYDYQEKSPREVTMKKGDILTLLNSTN--KDWWKVEVN-DR 60
Query: 89 ECSEGLVP 96
+G VP
Sbjct: 61 ---QGFVP 65
Score = 31.6 bits (72), Expect = 0.022
Identities = 10/37 (27%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Query: 2 TWVLA--DYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
VLA DY + E+++ KG + ++++++ DW
Sbjct: 18 ELVLALYDYQEKSPREVTMKKGDILTLLNSTN--KDW 52
>1g2b_A Spectrin alpha chain; capping protein, calcium-binding,
duplication, repeat, SH3 domain, cytoskeleton, metal
binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1
PDB: 1tud_A
Length = 62
Score = 32.8 bits (75), Expect = 0.005
Identities = 11/50 (22%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 30 SSAPPDWALGSGIEMTWVLADYTATNTTELSVHKGQQVEVVHNSSAPPDW 79
++ G+G E+ L DY + E+++ KG + ++++++ DW
Sbjct: 9 AAYVKKLDSGTGKELVLALYDYQEKSPREVTMKKGDILTLLNSTN--KDW 56
Score = 32.8 bits (75), Expect = 0.006
Identities = 7/30 (23%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 7 DYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
DY + E+++ KG + ++++++ DW
Sbjct: 29 DYQEKSPREVTMKKGDILTLLNSTN--KDW 56
>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3
domain, sturctural genomics, structural genomics; 1.39A
{Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A
2a08_A
Length = 60
Score = 32.9 bits (76), Expect = 0.005
Identities = 6/30 (20%), Positives = 13/30 (43%)
Query: 7 DYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
+ + +L KG + ++ S + DW
Sbjct: 11 SFAGEESGDLPFRKGDVITILKKSDSQNDW 40
Score = 32.1 bits (74), Expect = 0.007
Identities = 6/30 (20%), Positives = 13/30 (43%)
Query: 50 DYTATNTTELSVHKGQQVEVVHNSSAPPDW 79
+ + +L KG + ++ S + DW
Sbjct: 11 SFAGEESGDLPFRKGDVITILKKSDSQNDW 40
>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2,
protei binding, chronic myeloid leukemia; 1.53A {Homo
sapiens}
Length = 69
Score = 32.7 bits (75), Expect = 0.007
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Query: 50 DYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVP 96
DYTA + EL++H+G + V DW + G+ EG P
Sbjct: 14 DYTANRSDELTIHRGDIIRVFFKD--NEDWWYGSIGKGQ---EGYFP 55
Score = 31.9 bits (73), Expect = 0.011
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 7 DYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
DYTA + EL++H+G + V DW
Sbjct: 14 DYTANRSDELTIHRGDIIRVFFKD--NEDW 41
>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein;
NMR {Saccharomyces cerevisiae}
Length = 73
Score = 32.7 bits (75), Expect = 0.007
Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 4/50 (8%)
Query: 47 VLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVP 96
L D+ N EL + +G V + + W + G + GLVP
Sbjct: 10 ALYDFEPENDNELRLAEGDIVFISYKHG--QGWLVAENESGSK--TGLVP 55
Score = 30.7 bits (70), Expect = 0.030
Identities = 8/38 (21%), Positives = 14/38 (36%), Gaps = 2/38 (5%)
Query: 4 VLADYTAANTTELSVHKGQQVEVVHNSSAPPDWALGSG 41
L D+ N EL + +G V + + W +
Sbjct: 10 ALYDFEPENDNELRLAEGDIVFISYKHG--QGWLVAEN 45
>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N
protein 1; endocytosis, N-WAsp, dynamin, pacsin I,
transferase; 2.64A {Mus musculus} PDB: 2x3x_D
Length = 60
Score = 32.2 bits (74), Expect = 0.007
Identities = 13/47 (27%), Positives = 17/47 (36%), Gaps = 4/47 (8%)
Query: 50 DYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVP 96
DY ELS G ++ + W RL G+ GL P
Sbjct: 11 DYDGQEQDELSFKAGDELTKLGEED-EQGWCRGRLDSGQ---LGLYP 53
Score = 29.5 bits (67), Expect = 0.076
Identities = 8/34 (23%), Positives = 11/34 (32%), Gaps = 1/34 (2%)
Query: 7 DYTAANTTELSVHKGQQVEVVHNSSAPPDWALGS 40
DY ELS G ++ + W G
Sbjct: 11 DYDGQEQDELSFKAGDELTKLGEED-EQGWCRGR 43
>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 93
Score = 32.8 bits (75), Expect = 0.008
Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 4/75 (5%)
Query: 47 VLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPTCVLKQPPPS 106
L + A N E+S + G ++V + P W G G P +++ P S
Sbjct: 10 ALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQ-GN---FGWFPCNYVEKMPSS 65
Query: 107 VLRTATSPSKRITLP 121
A SP K + P
Sbjct: 66 ENEKAVSPKKALLPP 80
Score = 31.3 bits (71), Expect = 0.035
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 4 VLADYTAANTTELSVHKGQQVEVVHNSSAPPDWALGS 40
L + A N E+S + G ++V + P W GS
Sbjct: 10 ALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGS 46
>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor
protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}
Length = 58
Score = 32.1 bits (74), Expect = 0.008
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 4 VLADYTAANTTELSVHKGQQVEVVHNSSAPPDWALGS 40
V DY A + EL++ G+ + + W G
Sbjct: 6 VEFDYQAQHDDELTISVGEIITNI--RKEDGGWWEGQ 40
Score = 31.7 bits (73), Expect = 0.009
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 47 VLADYTATNTTELSVHKGQQVEVVHNSSAPPDW 79
V DY A + EL++ G+ + + W
Sbjct: 6 VEFDYQAQHDDELTISVGEIITNI--RKEDGGW 36
>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein,
structural protein; 1.30A {Saccharomyces cerevisiae}
SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A
Length = 58
Score = 32.2 bits (74), Expect = 0.008
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 4/40 (10%)
Query: 3 WVLA--DYTAANTTELSVHKGQQVEVVHNSSAPPDWALGS 40
W A DY AA EL+ + ++ + DW LG
Sbjct: 2 WATAEYDYDAAEDNELTFVENDKIINIEFVD--DDWWLGE 39
Score = 31.0 bits (71), Expect = 0.021
Identities = 9/36 (25%), Positives = 14/36 (38%), Gaps = 4/36 (11%)
Query: 46 WVLA--DYTATNTTELSVHKGQQVEVVHNSSAPPDW 79
W A DY A EL+ + ++ + DW
Sbjct: 2 WATAEYDYDAAEDNELTFVENDKIINIEFVD--DDW 35
>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, endocytosis/exocytosis complex; NMR {Homo
sapiens} SCOP: b.34.2.1
Length = 80
Score = 32.8 bits (75), Expect = 0.008
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 39 GSGIEMTWVLADYTATNTTELSVHKGQQVEVV 70
GS E+ V + Y A+ + +LS+ GQ + ++
Sbjct: 4 GSSGEIAQVTSAYVASGSEQLSLAPGQLILIL 35
Score = 30.5 bits (69), Expect = 0.044
Identities = 7/24 (29%), Positives = 15/24 (62%)
Query: 4 VLADYTAANTTELSVHKGQQVEVV 27
V + Y A+ + +LS+ GQ + ++
Sbjct: 12 VTSAYVASGSEQLSLAPGQLILIL 35
>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling
protein; 1.80A {Mus musculus}
Length = 60
Score = 31.8 bits (73), Expect = 0.009
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
Query: 39 GSGIEMTWVLA--DYTATNTTELSVHKGQQVEVVHNSSAPPDW 79
G + +A DY + ELS KG + + H +S DW
Sbjct: 1 GPLGSPEFAIAKFDYVGRSARELSFKKGASLLLYHRAS--EDW 41
Score = 31.4 bits (72), Expect = 0.017
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
Query: 2 TWVLA--DYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
+ +A DY + ELS KG + + H +S DW
Sbjct: 7 EFAIAKFDYVGRSARELSFKKGASLLLYHRAS--EDW 41
>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3,
signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A
2l3q_A 2ggr_A
Length = 304
Score = 33.8 bits (76), Expect = 0.013
Identities = 16/98 (16%), Positives = 30/98 (30%), Gaps = 5/98 (5%)
Query: 50 DYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPTCVLKQPPPSVLR 109
D+ + +L KG + + W S G+ G++P +++ P+
Sbjct: 142 DFNGNDEEDLPFKKGDILRIRDKPE--EQWWNAEDSEGK---RGMIPVPYVEKYRPASAS 196
Query: 110 TATSPSKRITLPIEQDLGRPGLDKSFYGDRQTTPKRIQ 147
+ Q LG P T +Q
Sbjct: 197 VSALIGGNQEGSHPQPLGGPEPGPYAQPSVNTPLPNLQ 234
Score = 28.0 bits (61), Expect = 1.2
Identities = 11/71 (15%), Positives = 21/71 (29%), Gaps = 4/71 (5%)
Query: 11 ANTTELSVHKGQQVEVVHNSSAPPDWALGSGIEMTWVLADY--TATNTTELSVHKGQQVE 68
+ + + S P L +G V+ A + T L++ G+ V+
Sbjct: 206 EGSHPQPLGGPEPGPYAQPSVNTPLPNLQNGPIYARVIQKRVPNAYDKTALALEVGELVK 265
Query: 69 VVHNSSAPPDW 79
V
Sbjct: 266 VT--KINVSGQ 274
Score = 27.6 bits (60), Expect = 1.8
Identities = 7/33 (21%), Positives = 12/33 (36%), Gaps = 2/33 (6%)
Query: 7 DYTAANTTELSVHKGQQVEVVHNSSAPPDWALG 39
A + T L++ G+ V+V G
Sbjct: 247 VPNAYDKTALALEVGELVKVT--KINVSGQWEG 277
Score = 26.5 bits (57), Expect = 3.7
Identities = 5/33 (15%), Positives = 10/33 (30%), Gaps = 2/33 (6%)
Query: 7 DYTAANTTELSVHKGQQVEVVHNSSAPPDWALG 39
D+ + +L KG + + W
Sbjct: 142 DFNGNDEEDLPFKKGDILRIRDKPE--EQWWNA 172
>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project
on protein structural and functional analyses; NMR
{Homo sapiens}
Length = 88
Score = 32.1 bits (73), Expect = 0.014
Identities = 9/52 (17%), Positives = 17/52 (32%), Gaps = 4/52 (7%)
Query: 30 SSAPPDWALGSGIEMTWVLADYT--ATNTTELSVHKGQQVEVVHNSSAPPDW 79
S+ P + +G + A + T L++ G V+V
Sbjct: 4 GSSGPLPSTQNGPVFAKAIQKRVPCAYDKTALALEVGDIVKVT--RMNINGQ 53
Score = 27.8 bits (62), Expect = 0.57
Identities = 6/30 (20%), Positives = 10/30 (33%), Gaps = 2/30 (6%)
Query: 7 DYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
A + T L++ G V+V
Sbjct: 26 VPCAYDKTALALEVGDIVKVT--RMNINGQ 53
>2pqh_A Spectrin alpha chain, brain; SH3 domain, chimera, , structural
protein; 1.75A {Gallus gallus}
Length = 80
Score = 32.0 bits (73), Expect = 0.014
Identities = 10/37 (27%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Query: 45 TWVLA--DYTATNTTELSVHKGQQVEVVHNSSAPPDW 79
VLA DY + E+++ KG + ++++++ DW
Sbjct: 3 ELVLALYDYQEKSPREVTMKKGDILTLLNSTN--KDW 37
Score = 31.6 bits (72), Expect = 0.019
Identities = 10/37 (27%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Query: 2 TWVLA--DYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
VLA DY + E+++ KG + ++++++ DW
Sbjct: 3 ELVLALYDYQEKSPREVTMKKGDILTLLNSTN--KDW 37
>2vwf_A Growth factor receptor-bound protein 2; polymorphism,
phosphoprotein, golgi apparatus, alternative splicing,
HOST-virus interaction, SH3C, signaling; 1.58A {Homo
sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A
Length = 58
Score = 31.4 bits (72), Expect = 0.014
Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
Query: 2 TWVLA--DYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
T+V A D+ EL +G + V+ ++ P+W
Sbjct: 3 TYVQALFDFDPQEDGELGFRRGDFIHVM--DNSDPNW 37
Score = 31.0 bits (71), Expect = 0.019
Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
Query: 45 TWVLA--DYTATNTTELSVHKGQQVEVVHNSSAPPDW 79
T+V A D+ EL +G + V+ ++ P+W
Sbjct: 3 TYVQALFDFDPQEDGELGFRRGDFIHVM--DNSDPNW 37
>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3
domain/complex, adaptor protein (MONA); 1.5A {Mus
musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A
2d0n_A
Length = 58
Score = 31.3 bits (72), Expect = 0.015
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
Query: 1 MTWVLA--DYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
+ W A D+ A EL G+ VEV+ S+ P W
Sbjct: 1 VRWARALYDFEALEEDELGFRSGEVVEVL--DSSNPSW 36
Score = 30.6 bits (70), Expect = 0.026
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
Query: 44 MTWVLA--DYTATNTTELSVHKGQQVEVVHNSSAPPDW 79
+ W A D+ A EL G+ VEV+ S+ P W
Sbjct: 1 VRWARALYDFEALEEDELGFRSGEVVEVL--DSSNPSW 36
>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A
{Saccharomyces cerevisiae}
Length = 59
Score = 31.4 bits (72), Expect = 0.015
Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 4/50 (8%)
Query: 47 VLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVP 96
L D+ N EL + +G V + + W + G + GLVP
Sbjct: 6 ALYDFEPENDNELRLAEGDIVFISYKHG--QGWLVAENESGSK--TGLVP 51
Score = 30.2 bits (69), Expect = 0.037
Identities = 8/38 (21%), Positives = 14/38 (36%), Gaps = 2/38 (5%)
Query: 4 VLADYTAANTTELSVHKGQQVEVVHNSSAPPDWALGSG 41
L D+ N EL + +G V + + W +
Sbjct: 6 ALYDFEPENDNELRLAEGDIVFISYKHG--QGWLVAEN 41
>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A
{Acanthamoeba} PDB: 2drk_A
Length = 58
Score = 31.4 bits (72), Expect = 0.015
Identities = 9/30 (30%), Positives = 12/30 (40%), Gaps = 2/30 (6%)
Query: 50 DYTATNTTELSVHKGQQVEVVHNSSAPPDW 79
DY A EL+ +G + V P W
Sbjct: 11 DYDAQTGDELTFKEGDTIIVH--QKDPAGW 38
Score = 31.4 bits (72), Expect = 0.016
Identities = 9/30 (30%), Positives = 12/30 (40%), Gaps = 2/30 (6%)
Query: 7 DYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
DY A EL+ +G + V P W
Sbjct: 11 DYDAQTGDELTFKEGDTIIVH--QKDPAGW 38
>3u23_A CD2-associated protein; structural genomics, structural genomics
consortium, SGC, BE barrel, adaptor protein, protein
binding; 1.11A {Homo sapiens} PDB: 2krn_A
Length = 65
Score = 31.4 bits (72), Expect = 0.016
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 4 VLADYTAANTTELSVHKGQQVEVVHNSSAPPDWALGS 40
VL +Y N EL + G +++ W G+
Sbjct: 12 VLFEYIPQNEDELELKVGDIIDIN--EEVEEGWWSGT 46
Score = 30.7 bits (70), Expect = 0.027
Identities = 8/33 (24%), Positives = 13/33 (39%), Gaps = 2/33 (6%)
Query: 47 VLADYTATNTTELSVHKGQQVEVVHNSSAPPDW 79
VL +Y N EL + G +++ W
Sbjct: 12 VLFEYIPQNEDELELKVGDIIDIN--EEVEEGW 42
>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma
1; SH3 domain, hydrolase; 1.20A {Rattus norvegicus}
PDB: 1ywp_A 1ywo_A
Length = 61
Score = 31.4 bits (72), Expect = 0.016
Identities = 8/30 (26%), Positives = 11/30 (36%), Gaps = 2/30 (6%)
Query: 7 DYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
DY A EL+ K ++ V W
Sbjct: 11 DYKAQREDELTFTKSAIIQNV--EKQDGGW 38
Score = 31.4 bits (72), Expect = 0.016
Identities = 8/30 (26%), Positives = 11/30 (36%), Gaps = 2/30 (6%)
Query: 50 DYTATNTTELSVHKGQQVEVVHNSSAPPDW 79
DY A EL+ K ++ V W
Sbjct: 11 DYKAQREDELTFTKSAIIQNV--EKQDGGW 38
>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins,
CIN85, PIX/COOL, protein-protein interaction, X-RAY,
endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A
Length = 64
Score = 31.4 bits (72), Expect = 0.017
Identities = 13/43 (30%), Positives = 16/43 (37%), Gaps = 4/43 (9%)
Query: 39 GSGIEMTWVLA--DYTATNTTELSVHKGQQVEVVHNSSAPPDW 79
GS V A ++ TN ELS KG + V W
Sbjct: 1 GSANSQLVVRAKFNFQQTNEDELSFSKGDVIHVT--RVEEGGW 41
Score = 28.7 bits (65), Expect = 0.16
Identities = 8/30 (26%), Positives = 11/30 (36%), Gaps = 2/30 (6%)
Query: 7 DYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
++ N ELS KG + V W
Sbjct: 14 NFQQTNEDELSFSKGDVIHVT--RVEEGGW 41
>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR
{Homo sapiens}
Length = 65
Score = 31.4 bits (72), Expect = 0.017
Identities = 8/42 (19%), Positives = 14/42 (33%), Gaps = 4/42 (9%)
Query: 1 MTWVLA--DYTAANTTELSVHKGQQVEVVHNSSAPPDWALGS 40
M +Y N EL + G +++ W G+
Sbjct: 1 MRQCKVLFEYIPQNEDELELKVGDIIDIN--EEVEEGWWSGT 40
Score = 31.0 bits (71), Expect = 0.021
Identities = 7/38 (18%), Positives = 12/38 (31%), Gaps = 4/38 (10%)
Query: 44 MTWVLA--DYTATNTTELSVHKGQQVEVVHNSSAPPDW 79
M +Y N EL + G +++ W
Sbjct: 1 MRQCKVLFEYIPQNEDELELKVGDIIDIN--EEVEEGW 36
>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus
musculus}
Length = 60
Score = 31.0 bits (71), Expect = 0.020
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 47 VLADYTATNTTELSVHKGQQVEVVHNSSAPPDW 79
L Y A +T ELS + ++++ P W
Sbjct: 10 ALYAYDAQDTDELSFNANDIIDII--KEDPSGW 40
Score = 31.0 bits (71), Expect = 0.020
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 4 VLADYTAANTTELSVHKGQQVEVVHNSSAPPDWALGS 40
L Y A +T ELS + ++++ P W G
Sbjct: 10 ALYAYDAQDTDELSFNANDIIDII--KEDPSGWWTGR 44
>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein;
1.07A {Homo sapiens}
Length = 58
Score = 31.0 bits (71), Expect = 0.020
Identities = 6/39 (15%), Positives = 13/39 (33%), Gaps = 4/39 (10%)
Query: 43 EMTWVLA--DYTATNTTELSVHKGQQVEVVHNSSAPPDW 79
++ A + EL +G + + S +W
Sbjct: 2 QVKVFRALYTFEPRTPDELYFEEGDIIYITDMSD--TNW 38
Score = 30.6 bits (70), Expect = 0.028
Identities = 5/30 (16%), Positives = 10/30 (33%), Gaps = 2/30 (6%)
Query: 7 DYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
+ EL +G + + S +W
Sbjct: 11 TFEPRTPDELYFEEGDIIYITDMSD--TNW 38
>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3
domain, structural genomics center for structural
genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A*
1x27_A*
Length = 175
Score = 32.7 bits (74), Expect = 0.020
Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 9/56 (16%)
Query: 30 SSAPPDWALGSGIEMTWVLA--DYTATNTTELSVHKGQQVEVVHNSSAPPDWALVR 83
S PP S ++ V+A Y ++ +L KG+Q+ ++ S +W +
Sbjct: 2 GSNPP----ASPLQDNLVIALHSYEPSHDGDLGFEKGEQLRILEQS---GEWWKAQ 50
Score = 29.7 bits (66), Expect = 0.29
Identities = 8/33 (24%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Query: 4 VLADYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
L Y ++ +L KG+Q+ ++ S +W
Sbjct: 17 ALHSYEPSHDGDLGFEKGEQLRILEQS---GEW 46
>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2
domain, SH3 zinc-finger, SH3- binding, UBL conjugation
pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A
2krm_A
Length = 62
Score = 31.0 bits (71), Expect = 0.022
Identities = 9/38 (23%), Positives = 15/38 (39%), Gaps = 3/38 (7%)
Query: 1 MTWVLA--DYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
M + DY A + EL++ G+ + V W
Sbjct: 1 MVDYIVEYDYDAVHDDELTIRVGEIIRNV-KKLQEEGW 37
Score = 30.6 bits (70), Expect = 0.027
Identities = 9/38 (23%), Positives = 15/38 (39%), Gaps = 3/38 (7%)
Query: 44 MTWVLA--DYTATNTTELSVHKGQQVEVVHNSSAPPDW 79
M + DY A + EL++ G+ + V W
Sbjct: 1 MVDYIVEYDYDAVHDDELTIRVGEIIRNV-KKLQEEGW 37
>2l0a_A STAM-1, signal transducing adapter molecule 1; structural
genomics, northeast structural genomics consortiu
PSI-2, protein structure initiative; NMR {Homo sapiens}
Length = 72
Score = 31.1 bits (71), Expect = 0.022
Identities = 9/52 (17%), Positives = 18/52 (34%), Gaps = 2/52 (3%)
Query: 28 HNSSAPPDWALGSGIEMTWVLADYTATNTTELSVHKGQQVEVVHNSSAPPDW 79
H+ + D+ A EL+ G+ + V+ + P+W
Sbjct: 3 HHHHHHSHMNHQHEARKVRAIYDFEAAEDNELTFKAGEIITVL--DDSDPNW 52
Score = 29.6 bits (67), Expect = 0.086
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 7 DYTAANTTELSVHKGQQVEVVHNSSAPPDWALGS 40
D+ AA EL+ G+ + V+ + P+W G
Sbjct: 25 DFEAAEDNELTFKAGEIITVL--DDSDPNWWKGE 56
>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain,
formin-binding protein 2, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 72
Score = 31.1 bits (71), Expect = 0.022
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 4/43 (9%)
Query: 39 GSGIEMTWVLA--DYTATNTTELSVHKGQQVEVVHNSSAPPDW 79
GS E +A DY ELS KG + + +S DW
Sbjct: 4 GSSGEPIEAIAKFDYVGRTARELSFKKGASLLLYQRAS--DDW 44
Score = 29.6 bits (67), Expect = 0.094
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Query: 7 DYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
DY ELS KG + + +S DW
Sbjct: 17 DYVGRTARELSFKKGASLLLYQRAS--DDW 44
>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 76
Score = 31.2 bits (71), Expect = 0.024
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 4/42 (9%)
Query: 40 SGIEMTWVLA--DYTATNTTELSVHKGQQVEVVHNSSAPPDW 79
SG + +A YT ELS +G + + +S DW
Sbjct: 6 SGEGVVEAVACFAYTGRTAQELSFRRGDVLRLHERAS--SDW 45
Score = 30.4 bits (69), Expect = 0.057
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Query: 7 DYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
YT ELS +G + + +S DW
Sbjct: 18 AYTGRTAQELSFRRGDVLRLHERAS--SDW 45
>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif)
2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early
endosome, signaling protein/signaling protein complex;
1.70A {Mus musculus} SCOP: b.34.2.1
Length = 62
Score = 31.0 bits (71), Expect = 0.024
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
Query: 40 SGIEMTWVLA--DYTATNTTELSVHKGQQVEVVHNSSAPPDW 79
+G V A D+ A EL+ G+ + V+ +S +W
Sbjct: 1 AGHMARRVRALYDFEAVEDNELTFKHGELITVLDDSD--ANW 40
Score = 30.3 bits (69), Expect = 0.039
Identities = 8/30 (26%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 7 DYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
D+ A EL+ G+ + V+ +S +W
Sbjct: 13 DFEAVEDNELTFKHGELITVLDDSD--ANW 40
>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase;
NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A
Length = 71
Score = 31.1 bits (71), Expect = 0.025
Identities = 9/33 (27%), Positives = 12/33 (36%), Gaps = 2/33 (6%)
Query: 47 VLADYTATNTTELSVHKGQQVEVVHNSSAPPDW 79
L DY A EL+ K ++ V W
Sbjct: 11 ALFDYKAQREDELTFIKSAIIQNV--EKQEGGW 41
Score = 31.1 bits (71), Expect = 0.029
Identities = 9/33 (27%), Positives = 12/33 (36%), Gaps = 2/33 (6%)
Query: 4 VLADYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
L DY A EL+ K ++ V W
Sbjct: 11 ALFDYKAQREDELTFIKSAIIQNV--EKQEGGW 41
>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo
sapiens}
Length = 69
Score = 30.7 bits (70), Expect = 0.029
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 50 DYTATNTTELSVHKGQQVEVV-HNSSAPPDW 79
D A + ELS KG + V+ ++ W
Sbjct: 11 DNVAESPDELSFRKGDIMTVLEQDTQGLDGW 41
Score = 30.4 bits (69), Expect = 0.043
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 7 DYTAANTTELSVHKGQQVEVV-HNSSAPPDW 36
D A + ELS KG + V+ ++ W
Sbjct: 11 DNVAESPDELSFRKGDIMTVLEQDTQGLDGW 41
>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2,
SH3 domain, TKL kinase, MKN28, structural GEN
structural genomics consortium, SGC; 2.00A {Homo
sapiens}
Length = 89
Score = 31.3 bits (71), Expect = 0.029
Identities = 12/64 (18%), Positives = 23/64 (35%), Gaps = 3/64 (4%)
Query: 19 HKGQQVEVVHNSSAPPDWALGSGIEMTWVLADYTATNTTELSVHKGQQVEVVHNSSAP-- 76
H V++ + + + DY A EL++ +G +V+V+ A
Sbjct: 6 HHSSGVDLGTENLYFQSMGTTPAGPVWTAVFDYEAAGDEELTLRRGDRVQVLSQDCAVSG 65
Query: 77 -PDW 79
W
Sbjct: 66 DEGW 69
Score = 30.6 bits (69), Expect = 0.060
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 7 DYTAANTTELSVHKGQQVEVVHNSSAP---PDW 36
DY AA EL++ +G +V+V+ A W
Sbjct: 37 DYEAAGDEELTLRRGDRVQVLSQDCAVSGDEGW 69
>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide
interaction, signaling protein; HET: NCO; 0.92A {Rattus
norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A
Length = 59
Score = 30.7 bits (70), Expect = 0.031
Identities = 10/41 (24%), Positives = 14/41 (34%), Gaps = 2/41 (4%)
Query: 39 GSGIEMTWVLADYTATNTTELSVHKGQQVEVVHNSSAPPDW 79
G + ++ TN ELS KG + V W
Sbjct: 1 GPLGSVVRAKFNFQQTNEDELSFSKGDVIHVT--RVEEGGW 39
Score = 29.9 bits (68), Expect = 0.059
Identities = 8/30 (26%), Positives = 11/30 (36%), Gaps = 2/30 (6%)
Query: 7 DYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
++ N ELS KG + V W
Sbjct: 12 NFQQTNEDELSFSKGDVIHVT--RVEEGGW 39
>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces
cerevisiae} PDB: 1ynz_A
Length = 58
Score = 30.6 bits (70), Expect = 0.033
Identities = 9/39 (23%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 41 GIEMTWVLADYTATNTTELSVHKGQQVEVVHNSSAPPDW 79
G+E L + +L + G +V+++ S P+W
Sbjct: 1 GMEYVEALYQFDPQQDGDLGLKPGDKVQLLEKLS--PEW 37
Score = 29.4 bits (67), Expect = 0.068
Identities = 8/36 (22%), Positives = 17/36 (47%), Gaps = 4/36 (11%)
Query: 3 WVLA--DYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
+V A + +L + G +V+++ S P+W
Sbjct: 4 YVEALYQFDPQQDGDLGLKPGDKVQLLEKLS--PEW 37
>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human
osteoclast stimulating factor 1, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 30.6 bits (70), Expect = 0.033
Identities = 8/41 (19%), Positives = 15/41 (36%), Gaps = 2/41 (4%)
Query: 39 GSGIEMTWVLADYTATNTTELSVHKGQQVEVVHNSSAPPDW 79
GS ++ L + EL +G + + S +W
Sbjct: 4 GSSGKVFRALYTFEPRTPDELYFEEGDIIYITDMSD--TNW 42
Score = 30.3 bits (69), Expect = 0.048
Identities = 6/32 (18%), Positives = 11/32 (34%), Gaps = 2/32 (6%)
Query: 5 LADYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
L + EL +G + + S +W
Sbjct: 13 LYTFEPRTPDELYFEEGDIIYITDMSD--TNW 42
>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein;
2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB:
2sem_A 3sem_A 1k76_A 1kfz_A
Length = 58
Score = 30.2 bits (69), Expect = 0.035
Identities = 9/39 (23%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Query: 43 EMTWVLA--DYTATNTTELSVHKGQQVEVVHNSSAPPDW 79
E +V A D+ + EL+ +G + ++ + P+W
Sbjct: 1 ETKFVQALFDFNPQESGELAFKRGDVITLI--NKDDPNW 37
Score = 30.2 bits (69), Expect = 0.042
Identities = 6/30 (20%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 7 DYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
D+ + EL+ +G + ++ + P+W
Sbjct: 10 DFNPQESGELAFKRGDVITLI--NKDDPNW 37
>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus
musculus}
Length = 68
Score = 30.7 bits (70), Expect = 0.036
Identities = 12/41 (29%), Positives = 14/41 (34%), Gaps = 2/41 (4%)
Query: 39 GSGIEMTWVLADYTATNTTELSVHKGQQVEVVHNSSAPPDW 79
GS V Y N EL + G +EVV W
Sbjct: 4 GSSGRRCQVAFSYLPQNDDELELKVGDIIEVV--GEVEEGW 42
Score = 30.3 bits (69), Expect = 0.041
Identities = 11/37 (29%), Positives = 13/37 (35%), Gaps = 2/37 (5%)
Query: 4 VLADYTAANTTELSVHKGQQVEVVHNSSAPPDWALGS 40
V Y N EL + G +EVV W G
Sbjct: 12 VAFSYLPQNDDELELKVGDIIEVV--GEVEEGWWEGV 46
>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces
cerevisiae}
Length = 54
Score = 30.2 bits (69), Expect = 0.039
Identities = 7/30 (23%), Positives = 11/30 (36%), Gaps = 1/30 (3%)
Query: 7 DYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
Y A E+S+ G + V+ W
Sbjct: 8 AYEAQGDDEISIDPGDIITVI-RGDDGSGW 36
Score = 29.8 bits (68), Expect = 0.047
Identities = 12/48 (25%), Positives = 17/48 (35%), Gaps = 5/48 (10%)
Query: 50 DYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPT 97
Y A E+S+ G + V+ W G +GL PT
Sbjct: 8 AYEAQGDDEISIDPGDIITVI-RGDDGSGWTYGECD-GL---KGLFPT 50
>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 69
Score = 30.3 bits (69), Expect = 0.044
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Query: 7 DYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
DY A + EL+ +G + V P W
Sbjct: 15 DYKAKRSDELTFCRGALIHNVSKE--PGGW 42
Score = 29.9 bits (68), Expect = 0.059
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Query: 50 DYTATNTTELSVHKGQQVEVVHNSSAPPDW 79
DY A + EL+ +G + V P W
Sbjct: 15 DYKAKRSDELTFCRGALIHNVSKE--PGGW 42
>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 30.4 bits (69), Expect = 0.044
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 39 GSGIEMTWVLADYTATNTTELSVHKGQQVEVV 70
SG+ L DY ELS +G + ++
Sbjct: 5 SSGVCFVKALYDYEGQTDDELSFPEGAIIRIL 36
Score = 28.8 bits (65), Expect = 0.16
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 7 DYTAANTTELSVHKGQQVEVV 27
DY ELS +G + ++
Sbjct: 16 DYEGQTDDELSFPEGAIIRIL 36
>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding
protein G; sortase, protein ligation, intein, inset,
solubility enhancement; NMR {Mus musculus}
Length = 142
Score = 31.6 bits (71), Expect = 0.049
Identities = 8/33 (24%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 47 VLADYTATNTTELSVHKGQQVEVVHNSSAPPDW 79
D+ A + +ELS+ +G ++++ N W
Sbjct: 10 ARYDFCARDRSELSLKEGDIIKIL-NKKGQQGW 41
Score = 30.8 bits (69), Expect = 0.079
Identities = 8/33 (24%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 4 VLADYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
D+ A + +ELS+ +G ++++ N W
Sbjct: 10 ARYDFCARDRSELSLKEGDIIKIL-NKKGQQGW 41
>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics,
SH3 domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 76
Score = 30.4 bits (69), Expect = 0.050
Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 2/33 (6%)
Query: 47 VLADYTATNTTELSVHKGQQVEVVHNSSAPPDW 79
++ TN ELSV KG + V W
Sbjct: 15 ARFNFKQTNEDELSVCKGDIIYVT--RVEEGGW 45
Score = 29.2 bits (66), Expect = 0.13
Identities = 9/33 (27%), Positives = 12/33 (36%), Gaps = 2/33 (6%)
Query: 4 VLADYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
++ N ELSV KG + V W
Sbjct: 15 ARFNFKQTNEDELSVCKGDIIYVT--RVEEGGW 45
>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 79
Score = 30.4 bits (69), Expect = 0.060
Identities = 10/50 (20%), Positives = 13/50 (26%), Gaps = 2/50 (4%)
Query: 30 SSAPPDWALGSGIEMTWVLADYTATNTTELSVHKGQQVEVVHNSSAPPDW 79
SS D L DY A E+S + + W
Sbjct: 5 SSGTYDEYENDLGITAVALYDYQAAGDDEISFDPDDIITNI--EMIDDGW 52
Score = 28.9 bits (65), Expect = 0.18
Identities = 8/33 (24%), Positives = 11/33 (33%), Gaps = 2/33 (6%)
Query: 4 VLADYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
L DY AA E+S + + W
Sbjct: 22 ALYDYQAAGDDEISFDPDDIITNI--EMIDDGW 52
>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1
GTPase-activating protein...; GTPase activation,
membrane, metal-binding, SH3 domain; NMR {Homo sapiens}
PDB: 2rqt_A 2rqu_A
Length = 76
Score = 30.0 bits (68), Expect = 0.062
Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 8/72 (11%)
Query: 40 SGIEMTWVLA--DYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPT 97
SG ++ V D A N EL+ +G+ + V +W + + G+ +G+ P
Sbjct: 6 SGNKVRRVKTIYDCQADNDDELTFIEGEVIIVT--GEEDQEWWIGHIE-GQPERKGVFPV 62
Query: 98 C---VLKQPPPS 106
+L PS
Sbjct: 63 SFVHILSDSGPS 74
Score = 28.1 bits (63), Expect = 0.33
Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 4 VLADYTAANTTELSVHKGQQVEVVHNSSAPPDWALGS 40
+ D A N EL+ +G+ + V +W +G
Sbjct: 15 TIYDCQADNDDELTFIEGEVIIVT--GEEDQEWWIGH 49
>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 98
Score = 30.5 bits (69), Expect = 0.075
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 7 DYTAANTTELSVHKGQQVEVVHNSSAPPDWALGS 40
DY A N ELS KGQ + V+ + PDW G
Sbjct: 42 DYAANNEDELSFSKGQLINVM--NKDDPDWWQGE 73
Score = 29.3 bits (66), Expect = 0.20
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 50 DYTATNTTELSVHKGQQVEVVHNSSAPPDW 79
DY A N ELS KGQ + V+ + PDW
Sbjct: 42 DYAANNEDELSFSKGQLINVM--NKDDPDW 69
>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus
musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A
4gbq_A
Length = 74
Score = 30.0 bits (68), Expect = 0.076
Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 50 DYTATNTTELSVHKGQQVEVVHNSSAPPDW 79
D+ AT ELS +G ++V++ +W
Sbjct: 17 DFKATADDELSFKRGDILKVLNEECD-QNW 45
Score = 29.2 bits (66), Expect = 0.12
Identities = 8/30 (26%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 7 DYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
D+ A ELS +G ++V++ +W
Sbjct: 17 DFKATADDELSFKRGDILKVLNEECD-QNW 45
>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3,
cysteine-rich domain protein, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 29.5 bits (67), Expect = 0.082
Identities = 6/36 (16%), Positives = 13/36 (36%), Gaps = 2/36 (5%)
Query: 5 LADYTAANTTELSVHKGQQVEVVHNSSAPPDWALGS 40
L + +L + G + ++ + DW G
Sbjct: 13 LYKFVPQENEDLEMRPGDIITLL--EDSNEDWWKGK 46
Score = 28.7 bits (65), Expect = 0.15
Identities = 5/32 (15%), Positives = 12/32 (37%), Gaps = 2/32 (6%)
Query: 48 LADYTATNTTELSVHKGQQVEVVHNSSAPPDW 79
L + +L + G + ++ + DW
Sbjct: 13 LYKFVPQENEDLEMRPGDIITLL--EDSNEDW 42
>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine
nucleotide exchange factor (GEF) 9, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 30.1 bits (68), Expect = 0.083
Identities = 17/80 (21%), Positives = 29/80 (36%), Gaps = 10/80 (12%)
Query: 40 SGIEMTWVLA--DYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPT 97
SG + A D+ EL+ G ++V+ ++ DW ++ E EG P
Sbjct: 6 SGDSIVSAEAVWDHVTMANRELAFKAGDVIKVL--DASNKDWWWGQID-DE---EGWFPA 59
Query: 98 --CVLKQPPPSVLRTATSPS 115
L + + PS
Sbjct: 60 SFVRLWVNQEDEVEEGSGPS 79
Score = 29.7 bits (67), Expect = 0.11
Identities = 7/30 (23%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 7 DYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
D+ EL+ G ++V+ ++ DW
Sbjct: 18 DHVTMANRELAFKAGDVIKVL--DASNKDW 45
>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR
{Homo sapiens}
Length = 92
Score = 30.1 bits (68), Expect = 0.095
Identities = 10/33 (30%), Positives = 12/33 (36%), Gaps = 2/33 (6%)
Query: 47 VLADYTATNTTELSVHKGQQVEVVHNSSAPPDW 79
V Y N EL + G +EVV W
Sbjct: 23 VAFSYLPQNDDELELKVGDIIEVV--GEVEEGW 53
Score = 30.1 bits (68), Expect = 0.097
Identities = 11/37 (29%), Positives = 13/37 (35%), Gaps = 2/37 (5%)
Query: 4 VLADYTAANTTELSVHKGQQVEVVHNSSAPPDWALGS 40
V Y N EL + G +EVV W G
Sbjct: 23 VAFSYLPQNDDELELKVGDIIEVV--GEVEEGWWEGV 57
>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 71
Score = 29.2 bits (66), Expect = 0.11
Identities = 5/35 (14%), Positives = 12/35 (34%), Gaps = 1/35 (2%)
Query: 7 DYTAANTTELSVHKGQQVEVV-HNSSAPPDWALGS 40
D + EL+ +G + ++ + W
Sbjct: 15 DNCPDCSDELAFSRGDILTILEQHVPESEGWWKCL 49
Score = 28.0 bits (63), Expect = 0.31
Identities = 5/31 (16%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 50 DYTATNTTELSVHKGQQVEVV-HNSSAPPDW 79
D + EL+ +G + ++ + W
Sbjct: 15 DNCPDCSDELAFSRGDILTILEQHVPESEGW 45
>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding
protein-peptide COMP; 1.20A {Homo sapiens} PDB: 1ark_A
1neb_A 3i35_A
Length = 64
Score = 29.1 bits (66), Expect = 0.11
Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 7 DYTAANTTELSVHKGQQVEVVHNSSAPPDWALGS 40
DY+A + E+S G + V W G+
Sbjct: 14 DYSAQDEDEVSFRDGDYIVNV--QPIDDGWMYGT 45
Score = 27.2 bits (61), Expect = 0.54
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 50 DYTATNTTELSVHKGQQVEVV 70
DY+A + E+S G + V
Sbjct: 14 DYSAQDEDEVSFRDGDYIVNV 34
>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange
factor, autoinhibition, domain-swapped, cell junction,
cell project endocytosis; 2.40A {Mus musculus} PDB:
3gf9_A
Length = 283
Score = 30.9 bits (70), Expect = 0.12
Identities = 15/57 (26%), Positives = 22/57 (38%)
Query: 50 DYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPTCVLKQPPPS 106
DYTA N EL+ KGQ + V++ V +G S + T +
Sbjct: 10 DYTAQNDDELAFSKGQIINVLNKEDPDWWKGEVSGQVGLFPSNYVKLTTDMDPSQQW 66
Score = 29.7 bits (67), Expect = 0.29
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 7 DYTAANTTELSVHKGQQVEVVHNSSAPPDWALGSG 41
DYTA N EL+ KGQ + V++ SG
Sbjct: 10 DYTAQNDDELAFSKGQIINVLNKEDPDWWKGEVSG 44
>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: b.34.2.1
Length = 72
Score = 29.2 bits (66), Expect = 0.12
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 7 DYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
A + +ELS G + VH S P W
Sbjct: 18 ACKAEHDSELSFTAGTVFDNVHPSQ-EPGW 46
Score = 29.2 bits (66), Expect = 0.12
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 50 DYTATNTTELSVHKGQQVEVVHNSSAPPDW 79
A + +ELS G + VH S P W
Sbjct: 18 ACKAEHDSELSFTAGTVFDNVHPSQ-EPGW 46
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta
barrel, beta sandwich, signaling protei; 2.25A {Homo
sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Length = 466
Score = 31.1 bits (70), Expect = 0.12
Identities = 14/87 (16%), Positives = 24/87 (27%), Gaps = 6/87 (6%)
Query: 47 VLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPTCVLKQPPPS 106
L D+ + EL G +EV+ + +W R++ EG P ++
Sbjct: 35 ALWDHVTMDDQELGFKAGDVIEVM--DATNREWWWGRVAD----GEGWFPASFVRLRVNQ 88
Query: 107 VLRTATSPSKRITLPIEQDLGRPGLDK 133
E K
Sbjct: 89 DEPADDDAPLAGNSGAEDGGAEAQSSK 115
Score = 28.8 bits (64), Expect = 0.62
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 4 VLADYTAANTTELSVHKGQQVEVVHNSSAPPDWALGS 40
L D+ + EL G +EV+ + +W G
Sbjct: 35 ALWDHVTMDDQELGFKAGDVIEVM--DATNREWWWGR 69
>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural
genomics, joint CENT structural genomics, JCSG, protein
structure initiative; HET: MLY; 2.20A {Homo sapiens}
PDB: 2frw_A 2js0_A
Length = 58
Score = 29.0 bits (65), Expect = 0.13
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 7 DYTAANTTELSVHKGQQVEVVHNSSAPPDWALGS 40
Y A ELS+ G +V V+ S W GS
Sbjct: 9 AYVAEREDELSLVXGSRVTVMEXCS--DGWWRGS 40
Score = 27.5 bits (61), Expect = 0.47
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Query: 50 DYTATNTTELSVHKGQQVEVVHNSSAPPDW 79
Y A ELS+ G +V V+ S W
Sbjct: 9 AYVAEREDELSLVXGSRVTVMEXCS--DGW 36
>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 70
Score = 29.1 bits (66), Expect = 0.14
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 39 GSGIEMTWVLADYTATNTTELSVHKGQQVEVV 70
GS + Y N EL + +G +V+V+
Sbjct: 4 GSSGTPYRAMYQYRPQNEDELELREGDRVDVM 35
Score = 28.4 bits (64), Expect = 0.23
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 4 VLADYTAANTTELSVHKGQQVEVV 27
+ Y N EL + +G +V+V+
Sbjct: 12 AMYQYRPQNEDELELREGDRVDVM 35
>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction,
hydrolase, protein binding; 1.65A {Mus musculus} PDB:
2d1x_A
Length = 65
Score = 28.7 bits (65), Expect = 0.14
Identities = 7/30 (23%), Positives = 10/30 (33%), Gaps = 2/30 (6%)
Query: 7 DYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
DY AA E+S + + W
Sbjct: 17 DYQAAGDDEISFDPDDIITNI--EMIDDGW 44
Score = 28.0 bits (63), Expect = 0.27
Identities = 6/30 (20%), Positives = 9/30 (30%), Gaps = 2/30 (6%)
Query: 50 DYTATNTTELSVHKGQQVEVVHNSSAPPDW 79
DY A E+S + + W
Sbjct: 17 DYQAAGDDEISFDPDDIITNI--EMIDDGW 44
>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, signaling protein; NMR {Homo sapiens} SCOP:
b.34.2.1
Length = 69
Score = 28.8 bits (65), Expect = 0.15
Identities = 6/32 (18%), Positives = 15/32 (46%), Gaps = 3/32 (9%)
Query: 48 LADYTATNTTELSVHKGQQVEVVHNSSAPPDW 79
L Y++ +L+ +G+++ V +W
Sbjct: 14 LYPYSSVEPGDLTFTEGEEILVTQKDG---EW 42
Score = 28.8 bits (65), Expect = 0.19
Identities = 6/32 (18%), Positives = 15/32 (46%), Gaps = 3/32 (9%)
Query: 5 LADYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
L Y++ +L+ +G+++ V +W
Sbjct: 14 LYPYSSVEPGDLTFTEGEEILVTQKDG---EW 42
>1i1j_A Melanoma derived growth regulatory protein; SH3 subdomain,
hormone/growth factor complex; 1.39A {Homo sapiens}
SCOP: b.34.2.1 PDB: 1k0x_A 1hjd_A
Length = 108
Score = 29.6 bits (66), Expect = 0.15
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 48 LADYTATNTTELSVHKGQQVEVVH-NSSAPPDW 79
L DY A + L++H+GQ V V +
Sbjct: 28 LQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLF 60
Score = 29.6 bits (66), Expect = 0.18
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 5 LADYTAANTTELSVHKGQQVEVVH-NSSAPPDWALGS 40
L DY A + L++H+GQ V V + GS
Sbjct: 28 LQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGS 64
>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene
homolog (avian)- signaling protein; NMR {Homo sapiens}
PDB: 2lqw_A*
Length = 303
Score = 30.7 bits (68), Expect = 0.16
Identities = 9/65 (13%), Positives = 20/65 (30%), Gaps = 4/65 (6%)
Query: 17 SVHKGQQVEVVHNSSAPPDWALGSGIEMTWVLADY--TATNTTELSVHKGQQVEVVHNSS 74
+ V ++ P + +G + A + T L++ G V+V +
Sbjct: 212 TTTPLPAVSGSPGAAITPLPSTQNGPVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNI 271
Query: 75 APPDW 79
Sbjct: 272 --NGQ 274
Score = 26.5 bits (57), Expect = 3.5
Identities = 7/33 (21%), Positives = 12/33 (36%), Gaps = 2/33 (6%)
Query: 7 DYTAANTTELSVHKGQQVEVVHNSSAPPDWALG 39
A + T L++ G V+V + G
Sbjct: 247 VPCAYDKTALALEVGDIVKVTRMNI--NGQWEG 277
>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export;
2.5A {Homo sapiens} PDB: 2bzx_A
Length = 67
Score = 28.4 bits (64), Expect = 0.19
Identities = 6/35 (17%), Positives = 11/35 (31%), Gaps = 4/35 (11%)
Query: 47 VLADYT--ATNTTELSVHKGQQVEVVHNSSAPPDW 79
+ A + T L++ G V+V
Sbjct: 6 AIQKRVPCAYDKTALALEVGDIVKVT--RMNINGQ 38
Score = 28.1 bits (63), Expect = 0.26
Identities = 7/38 (18%), Positives = 12/38 (31%), Gaps = 4/38 (10%)
Query: 4 VLADYT--AANTTELSVHKGQQVEVVHNSSAPPDWALG 39
+ A + T L++ G V+V G
Sbjct: 6 AIQKRVPCAYDKTALALEVGDIVKVT--RMNINGQWEG 41
>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 79
Score = 28.5 bits (64), Expect = 0.24
Identities = 8/33 (24%), Positives = 12/33 (36%), Gaps = 2/33 (6%)
Query: 47 VLADYTATNTTELSVHKGQQVEVVHNSSAPPDW 79
L + A EL++ KG V + W
Sbjct: 12 ALYSFQARQDDELNLEKGDIVIIH--EKKEEGW 42
Score = 28.5 bits (64), Expect = 0.27
Identities = 10/37 (27%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
Query: 4 VLADYTAANTTELSVHKGQQVEVVHNSSAPPDWALGS 40
L + A EL++ KG V + W GS
Sbjct: 12 ALYSFQARQDDELNLEKGDIVIIH--EKKEEGWWFGS 46
>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 94
Score = 28.6 bits (64), Expect = 0.26
Identities = 9/39 (23%), Positives = 14/39 (35%), Gaps = 2/39 (5%)
Query: 4 VLADYTAANTTELSVHKGQQVEVVHNSSAPPD--WALGS 40
V+ YT N EL + G + + W G+
Sbjct: 21 VIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGT 59
Score = 27.5 bits (61), Expect = 0.67
Identities = 7/32 (21%), Positives = 11/32 (34%)
Query: 47 VLADYTATNTTELSVHKGQQVEVVHNSSAPPD 78
V+ YT N EL + G + +
Sbjct: 21 VIYPYTPQNDDELELVPGDFIFMSPMEQTSTS 52
>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin,
C-CBL-associated protein, CAP, SH3 domain protein 5
SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens}
PDB: 2dlm_A
Length = 68
Score = 28.3 bits (64), Expect = 0.27
Identities = 11/42 (26%), Positives = 15/42 (35%), Gaps = 4/42 (9%)
Query: 40 SGIEMTWVLA--DYTATNTTELSVHKGQQVEVVHNSSAPPDW 79
SG A D+ A EL + KG V + +W
Sbjct: 3 SGSSGRPARAKFDFKAQTLKELPLQKGDIVYIY--KQIDQNW 42
Score = 27.6 bits (62), Expect = 0.40
Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 2/34 (5%)
Query: 7 DYTAANTTELSVHKGQQVEVVHNSSAPPDWALGS 40
D+ A EL + KG V + +W G
Sbjct: 15 DFKAQTLKELPLQKGDIVYIY--KQIDQNWYEGE 46
>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex,
helix-turn-helix, hormone/growth factor complex; NMR
{Homo sapiens} SCOP: b.34.2.1
Length = 62
Score = 27.9 bits (63), Expect = 0.27
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 4/39 (10%)
Query: 43 EMTWVLA--DYTATNTTELSVHKGQQVEVVHNSSAPPDW 79
+ + V A Y AT +L +G + V+ S +W
Sbjct: 4 KGSQVEALFSYEATQPEDLEFQEGDIILVL--SKVNEEW 40
Score = 26.8 bits (60), Expect = 0.66
Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 4/42 (9%)
Query: 1 MTWVLA--DYTAANTTELSVHKGQQVEVVHNSSAPPDWALGS 40
+ V A Y A +L +G + V+ S +W G
Sbjct: 5 GSQVEALFSYEATQPEDLEFQEGDIILVL--SKVNEEWLEGE 44
>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal
transducing adaptor molecule, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 28.6 bits (64), Expect = 0.29
Identities = 10/51 (19%), Positives = 17/51 (33%), Gaps = 2/51 (3%)
Query: 29 NSSAPPDWALGSGIEMTWVLADYTATNTTELSVHKGQQVEVVHNSSAPPDW 79
SS L D+ A EL+ G+ + V+ + +W
Sbjct: 4 GSSGSEIQLNNKVARKVRALYDFEAVEDNELTFKHGEIIIVL--DDSDANW 52
Score = 27.0 bits (60), Expect = 0.90
Identities = 7/30 (23%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 7 DYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
D+ A EL+ G+ + V+ + +W
Sbjct: 25 DFEAVEDNELTFKHGEIIIVL--DDSDANW 52
>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast,
SH3 domain, structural genomics, contractIle protein;
0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A
Length = 68
Score = 28.0 bits (63), Expect = 0.34
Identities = 6/30 (20%), Positives = 12/30 (40%), Gaps = 2/30 (6%)
Query: 50 DYTATNTTELSVHKGQQVEVVHNSSAPPDW 79
Y + +L+ K Q++ V +W
Sbjct: 15 PYKSDYEDDLNFEKDQEIIVTSVED--AEW 42
Score = 27.7 bits (62), Expect = 0.43
Identities = 6/30 (20%), Positives = 12/30 (40%), Gaps = 2/30 (6%)
Query: 7 DYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
Y + +L+ K Q++ V +W
Sbjct: 15 PYKSDYEDDLNFEKDQEIIVTSVED--AEW 42
>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 79
Score = 28.1 bits (63), Expect = 0.36
Identities = 6/41 (14%), Positives = 15/41 (36%)
Query: 30 SSAPPDWALGSGIEMTWVLADYTATNTTELSVHKGQQVEVV 70
SS + + + + A E+++ + V V+
Sbjct: 5 SSGWQGLSSKGDLPQVEITKAFFAKQADEVTLQQADVVLVL 45
Score = 26.5 bits (59), Expect = 1.3
Identities = 4/24 (16%), Positives = 11/24 (45%)
Query: 4 VLADYTAANTTELSVHKGQQVEVV 27
+ + A E+++ + V V+
Sbjct: 22 ITKAFFAKQADEVTLQQADVVLVL 45
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.6 bits (66), Expect = 0.38
Identities = 28/110 (25%), Positives = 44/110 (40%), Gaps = 25/110 (22%)
Query: 46 WVLADYTATNTTELSVH----KGQQVEVVHNSSA-----PPDWALVRLSLGEECSEGLVP 96
+ + D N L++H KG+++ N SA D L + +E +E
Sbjct: 1659 FSILDIVINNPVNLTIHFGGEKGKRIR--ENYSAMIFETIVDGKLKTEKIFKEINEHS-- 1714
Query: 97 TCVLKQPPPSVL-RTA-TSPSKRITLPIE----QDLGRPGL---DKSFYG 137
T + +L T T P +TL +E +DL GL D +F G
Sbjct: 1715 TSYTFRSEKGLLSATQFTQP--ALTL-MEKAAFEDLKSKGLIPADATFAG 1761
Score = 28.1 bits (62), Expect = 1.4
Identities = 25/115 (21%), Positives = 36/115 (31%), Gaps = 36/115 (31%)
Query: 3 WVLADYTAANTTELSVH----KGQQVEVVHNSSA-----PPDWALGSGI---EMTWVLAD 50
+ + D N L++H KG+++ N SA D L + E+
Sbjct: 1659 FSILDIVINNPVNLTIHFGGEKGKRIR--ENYSAMIFETIVDGKLKTEKIFKEINEHSTS 1716
Query: 51 YT---------AT-NT------TELSVHKGQQVEVV-HNSSAPPDWALVRLSLGE 88
YT AT T E + E + P D SLGE
Sbjct: 1717 YTFRSEKGLLSATQFTQPALTLMEKA-----AFEDLKSKGLIPADATFAGHSLGE 1766
>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure,
signaling protein; NMR {Homo sapiens}
Length = 68
Score = 27.6 bits (62), Expect = 0.39
Identities = 6/30 (20%), Positives = 12/30 (40%), Gaps = 2/30 (6%)
Query: 50 DYTATNTTELSVHKGQQVEVVHNSSAPPDW 79
D+ N EL +G + + + +W
Sbjct: 11 DFEPENQGELGFKEGDIITLT--NQIDENW 38
Score = 27.6 bits (62), Expect = 0.41
Identities = 7/34 (20%), Positives = 13/34 (38%), Gaps = 2/34 (5%)
Query: 7 DYTAANTTELSVHKGQQVEVVHNSSAPPDWALGS 40
D+ N EL +G + + + +W G
Sbjct: 11 DFEPENQGELGFKEGDIITLT--NQIDENWYEGM 42
>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural
protein; NMR {Dictyostelium discoideum}
Length = 80
Score = 27.7 bits (62), Expect = 0.43
Identities = 6/33 (18%), Positives = 12/33 (36%), Gaps = 1/33 (3%)
Query: 47 VLADYTATNTTELSVHKGQQVEVVHNSSAPPDW 79
L DY ++T+ L + + + W
Sbjct: 15 ALKDYNVSDTSLLPFKRNDIITIT-FKDQENKW 46
Score = 27.7 bits (62), Expect = 0.49
Identities = 7/37 (18%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
Query: 4 VLADYTAANTTELSVHKGQQVEVVHNSSAPPDWALGS 40
L DY ++T+ L + + + W +G
Sbjct: 15 ALKDYNVSDTSLLPFKRNDIITIT-FKDQENKWFMGQ 50
>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB:
2o31_A 2o9v_A 2o2w_A
Length = 67
Score = 27.6 bits (62), Expect = 0.43
Identities = 11/57 (19%), Positives = 25/57 (43%), Gaps = 7/57 (12%)
Query: 50 DYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPTC---VLKQP 103
++ E+S KG+++ ++ +W R+ +G+ P V+K+P
Sbjct: 14 NFNGDTQVEMSFRKGERITLLRQVD--ENWYEGRIPGTSR--QGIFPITYVDVIKRP 66
Score = 27.6 bits (62), Expect = 0.47
Identities = 6/34 (17%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 7 DYTAANTTELSVHKGQQVEVVHNSSAPPDWALGS 40
++ E+S KG+++ ++ +W G
Sbjct: 14 NFNGDTQVEMSFRKGERITLLRQVD--ENWYEGR 45
>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator,
P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 71
Score = 27.6 bits (62), Expect = 0.47
Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 5/51 (9%)
Query: 47 VLADYTA-TNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVP 96
+ YT +T E+S KG V + W V +E +GL+
Sbjct: 12 AILPYTKVPDTDEISFLKGDMFIVHNELE--DGWMWVTNLRTDE--QGLIV 58
Score = 26.9 bits (60), Expect = 0.92
Identities = 11/55 (20%), Positives = 18/55 (32%), Gaps = 8/55 (14%)
Query: 4 VLADYTAA-NTTELSVHKGQQVEVVHNSSAPPDWALGSGIEMT----WVLADYTA 53
+ YT +T E+S KG V + W + T ++ D
Sbjct: 12 AILPYTKVPDTDEISFLKGDMFIVHNELE--DGWMWVTN-LRTDEQGLIVEDLVE 63
>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein,
membrane, nuclear protein, phosphorylation,
polymorphism, transport, structural genomics; NMR {Homo
sapiens}
Length = 70
Score = 27.6 bits (62), Expect = 0.52
Identities = 6/36 (16%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 5 LADYTAANTTELSVHKGQQVEVVHNSSAPPDWALGS 40
++ E+S KG+++ ++ +W G
Sbjct: 13 KFNFNGDTQVEMSFRKGERITLL--RQVDENWYEGR 46
Score = 26.8 bits (60), Expect = 0.99
Identities = 8/42 (19%), Positives = 18/42 (42%), Gaps = 4/42 (9%)
Query: 40 SGIEMTWVLA--DYTATNTTELSVHKGQQVEVVHNSSAPPDW 79
SG +A ++ E+S KG+++ ++ +W
Sbjct: 3 SGSSGGEAIAKFNFNGDTQVEMSFRKGERITLL--RQVDENW 42
>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 78
Score = 27.7 bits (62), Expect = 0.54
Identities = 5/30 (16%), Positives = 10/30 (33%), Gaps = 2/30 (6%)
Query: 7 DYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
D+ + EL K + ++ S
Sbjct: 15 DFERHDDDELGFRKNDIITII--SQKDEHC 42
Score = 27.3 bits (61), Expect = 0.78
Identities = 5/30 (16%), Positives = 10/30 (33%), Gaps = 2/30 (6%)
Query: 50 DYTATNTTELSVHKGQQVEVVHNSSAPPDW 79
D+ + EL K + ++ S
Sbjct: 15 DFERHDDDELGFRKNDIITII--SQKDEHC 42
>2vn4_A Glucoamylase; hydrolase, carbohydrate binding, glycoside hydrolase
family 15, amyloglucosidase; HET: MAN NAG BTB; 1.85A
{Hypocrea jecorina} PDB: 2vn7_A*
Length = 599
Score = 29.1 bits (64), Expect = 0.54
Identities = 12/65 (18%), Positives = 26/65 (40%), Gaps = 8/65 (12%)
Query: 21 GQQVEVVHNSSAPPDWALGSGIEMTWVLADYTATN---TTELSVHKGQQVE---VVHNSS 74
GQ V+V N++A +W+ + + + +Y + +++ G VE +
Sbjct: 510 GQTVKVAGNAAALGNWSTSAAVALDA--VNYADNHPLWIGTVNLEAGDVVEYKYINVGQD 567
Query: 75 APPDW 79
W
Sbjct: 568 GSVTW 572
>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus}
SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B
Length = 115
Score = 28.1 bits (62), Expect = 0.57
Identities = 12/52 (23%), Positives = 18/52 (34%), Gaps = 3/52 (5%)
Query: 4 VLADYTAANTTELSVHKGQQVEVVHNSSA---PPDWALGSGIEMTWVLADYT 52
DYTA +T EL + G V V+ + W +G +
Sbjct: 49 AQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELE 100
Score = 28.1 bits (62), Expect = 0.58
Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Query: 26 VVHNSSAPPDWALGSGIEMTW-VLADYTATNTTELSVHKGQQVEVVHNSSA 75
V S+ L G DYTAT+T EL + G V V+ +
Sbjct: 27 AVEGSTTTGRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNP 77
>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain
protein 2A, endophilin 1, EEN-B1, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2knb_B 3iql_A
Length = 73
Score = 27.2 bits (61), Expect = 0.63
Identities = 7/34 (20%), Positives = 13/34 (38%), Gaps = 2/34 (5%)
Query: 7 DYTAANTTELSVHKGQQVEVVHNSSAPPDWALGS 40
D+ N EL +G + + + +W G
Sbjct: 15 DFEPENEGELGFKEGDIITLT--NQIDENWYEGM 46
Score = 26.5 bits (59), Expect = 1.4
Identities = 6/30 (20%), Positives = 12/30 (40%), Gaps = 2/30 (6%)
Query: 50 DYTATNTTELSVHKGQQVEVVHNSSAPPDW 79
D+ N EL +G + + + +W
Sbjct: 15 DFEPENEGELGFKEGDIITLT--NQIDENW 42
>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin
SH3 domain, SPC-S19P20S circular permutant, S protein;
NMR {Synthetic}
Length = 73
Score = 27.4 bits (61), Expect = 0.68
Identities = 8/32 (25%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Query: 5 LADYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
L Y+A E+++ KG + ++++++ DW
Sbjct: 6 LPPYSAGGR-EVTMKKGDILTLLNSTN--KDW 34
>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3
domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A
Length = 60
Score = 26.7 bits (60), Expect = 0.75
Identities = 7/30 (23%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 50 DYTATNTTELSVHKGQQVEVVHNSSAPPDW 79
D+T + EL+ G + ++ + DW
Sbjct: 12 DFTGNSKLELNFKAGDVIFLLSRIN--KDW 39
Score = 26.7 bits (60), Expect = 0.86
Identities = 8/34 (23%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 7 DYTAANTTELSVHKGQQVEVVHNSSAPPDWALGS 40
D+T + EL+ G + ++ + DW G+
Sbjct: 12 DFTGNSKLELNFKAGDVIFLLSRIN--KDWLEGT 43
>3a98_A DOCK2, dedicator of cytokinesis protein 2; protein-protein complex,
DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich
sequence, cytoskeleton; 2.10A {Homo sapiens}
Length = 184
Score = 28.1 bits (62), Expect = 0.82
Identities = 13/78 (16%), Positives = 26/78 (33%), Gaps = 4/78 (5%)
Query: 30 SSAPPDWALGSGIEMTWVLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEE 89
SS W + ++ + +LS+ G V + DW L + +
Sbjct: 5 SSGMAPWRKADKERHGVAIYNFQGSGAPQLSLQIGDVVRIQETC---GDWYRGYL-IKHK 60
Query: 90 CSEGLVPTCVLKQPPPSV 107
+G+ P + +V
Sbjct: 61 MLQGIFPKSFIHIKEVTV 78
>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel,
endosome, L binding, membrane, phosphoprotein,
proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus}
Length = 73
Score = 26.8 bits (60), Expect = 0.88
Identities = 7/34 (20%), Positives = 13/34 (38%), Gaps = 2/34 (5%)
Query: 7 DYTAANTTELSVHKGQQVEVVHNSSAPPDWALGS 40
D+ N EL +G + + + +W G
Sbjct: 21 DFEPENDGELGFREGDLITLT--NQIDENWYEGM 52
Score = 26.5 bits (59), Expect = 1.3
Identities = 6/30 (20%), Positives = 12/30 (40%), Gaps = 2/30 (6%)
Query: 50 DYTATNTTELSVHKGQQVEVVHNSSAPPDW 79
D+ N EL +G + + + +W
Sbjct: 21 DFEPENDGELGFREGDLITLT--NQIDENW 48
>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3,
signaling protein; NMR {Homo sapiens}
Length = 67
Score = 26.5 bits (59), Expect = 0.98
Identities = 7/35 (20%), Positives = 13/35 (37%), Gaps = 4/35 (11%)
Query: 4 VLADYT--AANTTELSVHKGQQVEVVHNSSAPPDW 36
V+ A + T L++ G+ V+V
Sbjct: 11 VIQKRVPNAYDKTALALEVGELVKVT--KINVSGQ 43
Score = 26.5 bits (59), Expect = 1.0
Identities = 7/35 (20%), Positives = 13/35 (37%), Gaps = 4/35 (11%)
Query: 47 VLADYT--ATNTTELSVHKGQQVEVVHNSSAPPDW 79
V+ A + T L++ G+ V+V
Sbjct: 11 VIQKRVPNAYDKTALALEVGELVKVT--KINVSGQ 43
>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing
adapter molecule 1, SCAM-1, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 90
Score = 27.0 bits (60), Expect = 1.1
Identities = 17/91 (18%), Positives = 34/91 (37%), Gaps = 11/91 (12%)
Query: 30 SSAPPDWALGSGIEMTWVLA--DYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLG 87
SS P +E +A + ELS KG+ + ++ + +W R++
Sbjct: 5 SSGKPPTY--QVLEYGEAVAQYTFKGDLEVELSFRKGEHICLIRKVN--ENWYEGRITGT 60
Query: 88 EECSEGLVPTC---VLKQPPPSVLRTATSPS 115
+G+ P V ++P + + S
Sbjct: 61 GR--QGIFPASYVQVSREPRLRLCDDSGPSS 89
Score = 26.2 bits (58), Expect = 1.9
Identities = 7/34 (20%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 7 DYTAANTTELSVHKGQQVEVVHNSSAPPDWALGS 40
+ ELS KG+ + ++ + +W G
Sbjct: 25 TFKGDLEVELSFRKGEHICLIRKVN--ENWYEGR 56
>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}
Length = 65
Score = 26.4 bits (59), Expect = 1.1
Identities = 8/33 (24%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 47 VLADYTATNTTELSVHKGQQVEVVHNSSAPPDW 79
+ D+ A + EL++ KG V + +W
Sbjct: 6 LKFDFQAQSPKELTLQKGDIVYIH--KEVDKNW 36
Score = 26.0 bits (58), Expect = 1.5
Identities = 8/33 (24%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 4 VLADYTAANTTELSVHKGQQVEVVHNSSAPPDW 36
+ D+ A + EL++ KG V + +W
Sbjct: 6 LKFDFQAQSPKELTLQKGDIVYIH--KEVDKNW 36
>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo
sapiens}
Length = 79
Score = 26.5 bits (59), Expect = 1.2
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 50 DYTATNTTELSVHKGQQVEVVHNSSAPPDW 79
D+T + EL+ G + ++ S DW
Sbjct: 26 DFTGNSKLELNFKAGDVIFLL--SRINKDW 53
Score = 26.5 bits (59), Expect = 1.3
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 7 DYTAANTTELSVHKGQQVEVVHNSSAPPDWALGS 40
D+T + EL+ G + ++ S DW G+
Sbjct: 26 DFTGNSKLELNFKAGDVIFLL--SRINKDWLEGT 57
>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3
domain, five-stranded barrel, mouse cDNA; NMR {Mus
musculus} SCOP: b.34.2.1
Length = 72
Score = 26.2 bits (58), Expect = 1.7
Identities = 7/28 (25%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 47 VLADYTA-TNTTELSVHKGQQVEVVHNS 73
+ +TA N T LS +G + ++
Sbjct: 12 TIFPHTAGNNKTLLSFAQGDVLTLLIPE 39
Score = 25.8 bits (57), Expect = 2.0
Identities = 7/28 (25%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 4 VLADYTAA-NTTELSVHKGQQVEVVHNS 30
+ +TA N T LS +G + ++
Sbjct: 12 TIFPHTAGNNKTLLSFAQGDVLTLLIPE 39
>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate
repeat-containing protein, structural genomics, NPPSFA;
NMR {Homo sapiens} PDB: 2kea_A
Length = 73
Score = 25.8 bits (57), Expect = 1.8
Identities = 8/35 (22%), Positives = 16/35 (45%), Gaps = 4/35 (11%)
Query: 47 VLADY--TATNTTELSVHKGQQVEVVHNSSAPPDW 79
V D+ + +T L + KG ++++ S P
Sbjct: 14 VHTDFTPSPYDTDSLKLKKGDIIDII--SKPPMGT 46
Score = 25.4 bits (56), Expect = 2.6
Identities = 8/35 (22%), Positives = 16/35 (45%), Gaps = 4/35 (11%)
Query: 4 VLADY--TAANTTELSVHKGQQVEVVHNSSAPPDW 36
V D+ + +T L + KG ++++ S P
Sbjct: 14 VHTDFTPSPYDTDSLKLKKGDIIDII--SKPPMGT 46
>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate
head cDNA, riken FULL-length enriched library,
clone:4831401O22, structural genomics; NMR {Mus
musculus}
Length = 68
Score = 25.6 bits (57), Expect = 2.3
Identities = 6/30 (20%), Positives = 12/30 (40%), Gaps = 2/30 (6%)
Query: 50 DYTATNTTELSVHKGQQVEVVHNSSAPPDW 79
+Y N +L +KG + + +W
Sbjct: 15 NYRGKNPGDLKFNKGDVILLR--RQLDENW 42
Score = 25.6 bits (57), Expect = 2.5
Identities = 7/34 (20%), Positives = 13/34 (38%), Gaps = 2/34 (5%)
Query: 7 DYTAANTTELSVHKGQQVEVVHNSSAPPDWALGS 40
+Y N +L +KG + + +W G
Sbjct: 15 NYRGKNPGDLKFNKGDVILLR--RQLDENWYQGE 46
>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D
of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis,
membrane, phagocytosis; NMR {Homo sapiens}
Length = 119
Score = 26.2 bits (57), Expect = 2.5
Identities = 11/68 (16%), Positives = 24/68 (35%), Gaps = 4/68 (5%)
Query: 30 SSAPPDWALGSGIEMTWVLADYTATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEE 89
S+ + G + ++ + +LS+ G V + DW L + +
Sbjct: 47 GSSGSSGSSGDKERHGVAIYNFQGSGAPQLSLQIGDVVRIQETC---GDWYRGYL-IKHK 102
Query: 90 CSEGLVPT 97
+G+ P
Sbjct: 103 MLQGIFPK 110
>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, endocytosis/exocytosis complex; NMR {Homo
sapiens} SCOP: b.34.2.1
Length = 74
Score = 25.4 bits (56), Expect = 3.1
Identities = 5/21 (23%), Positives = 9/21 (42%)
Query: 50 DYTATNTTELSVHKGQQVEVV 70
+TA L+ K + V+
Sbjct: 18 SWTAKKDNHLNFSKHDIITVL 38
Score = 25.4 bits (56), Expect = 3.5
Identities = 5/21 (23%), Positives = 9/21 (42%)
Query: 7 DYTAANTTELSVHKGQQVEVV 27
+TA L+ K + V+
Sbjct: 18 SWTAKKDNHLNFSKHDIITVL 38
>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein
1; IRTKS-SH3, espfu, complex structure, protein
binding; NMR {Homo sapiens}
Length = 67
Score = 25.0 bits (55), Expect = 3.3
Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 39 GSGIEMTWVLA--DYTA-TNTTELSVHKGQQVEVV 70
GS ++ V +TA +N T LS +G + ++
Sbjct: 1 GSHMKKQKVKTIFPHTAGSNKTLLSFAQGDVITLL 35
Score = 25.0 bits (55), Expect = 4.1
Identities = 7/25 (28%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 4 VLADYTAA-NTTELSVHKGQQVEVV 27
+ +TA N T LS +G + ++
Sbjct: 11 TIFPHTAGSNKTLLSFAQGDVITLL 35
>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3
domain, protein binding; 2.01A {Homo sapiens} PDB:
2kt1_A
Length = 90
Score = 25.7 bits (56), Expect = 3.5
Identities = 6/36 (16%), Positives = 11/36 (30%)
Query: 4 VLADYTAANTTELSVHKGQQVEVVHNSSAPPDWALG 39
L + +L + G + V + A G
Sbjct: 16 ALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEG 51
Score = 24.9 bits (54), Expect = 5.1
Identities = 5/34 (14%), Positives = 10/34 (29%)
Query: 47 VLADYTATNTTELSVHKGQQVEVVHNSSAPPDWA 80
L + +L + G + V + A
Sbjct: 16 ALYPFRRERPEDLELLPGDVLVVSRAALQALGVA 49
>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3,
signaling protein; NMR {Gallus gallus}
Length = 77
Score = 25.2 bits (55), Expect = 3.9
Identities = 13/67 (19%), Positives = 27/67 (40%), Gaps = 9/67 (13%)
Query: 53 ATNTTELSVHKGQQVEVVHNSSAPPDWALVRLSLGEECSEGLVPT---CVLKQPPPSVLR 109
A E+++ KG + ++++++ DW V ++ +G VP L L
Sbjct: 2 AMGPREVTMKKGDILTLLNSTN--KDWWKVEVN-DR---QGFVPAAYVKKLDSGTGKELV 55
Query: 110 TATSPSK 116
A +
Sbjct: 56 LALYDYQ 62
>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold
protein 1, islet-brain-1, IB-1, mitogen-activated P
kinase 8-interacting protein 1; 3.00A {Rattus
norvegicus}
Length = 71
Score = 24.6 bits (54), Expect = 6.2
Identities = 3/24 (12%), Positives = 8/24 (33%)
Query: 47 VLADYTATNTTELSVHKGQQVEVV 70
+ + + EL + + V
Sbjct: 11 AIFRFVPRHEDELELEVDDPLLVE 34
Score = 24.2 bits (53), Expect = 7.6
Identities = 5/36 (13%), Positives = 10/36 (27%), Gaps = 2/36 (5%)
Query: 4 VLADYTAANTTELSVHKGQQVEVVHNSSAPPDWALG 39
+ + + EL + + V A W
Sbjct: 11 AIFRFVPRHEDELELEVDDPLLVE--LQAEDYWYEA 44
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC,
cell junction, cell membrane, membrane, SH3 domain;
2.80A {Homo sapiens}
Length = 308
Score = 25.9 bits (56), Expect = 6.3
Identities = 9/65 (13%), Positives = 18/65 (27%), Gaps = 9/65 (13%)
Query: 47 VLADYTATNTTELSVHKGQQVEVV-------HNSSAPPDW--ALVRLSLGEECSEGLVPT 97
+ + + L +G V+ S A A+ E G++P
Sbjct: 9 THFELEPSPPSGLGFTRGDVFHVLDTLHPGPGQSHARGGHWLAVRMGRDLREQERGIIPN 68
Query: 98 CVLKQ 102
+
Sbjct: 69 QSRAE 73
>2wzp_R Lactococcal phage P2 ORF16; baseplate, viral protein; 2.60A
{Lactococcus phage P2} PDB: 2x53_Y 2x54_Y 2x5a_Y
Length = 375
Score = 25.9 bits (56), Expect = 6.7
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 8 YTAANTTELSVHKGQQVEVVHNSSAPPDWALGS----GIEMTWVLADYTATNTTEL 59
YT++ T +SV G V+++ P + ALG ++M +++ D +N L
Sbjct: 53 YTSSATLTVSVEVGDIVQILFPEVVPIEEALGKKKKLNLDMVYLVTDVDESNKATL 108
>3ne5_A Cation efflux system protein CUSA; transmembrane helix, metal
transport; 2.90A {Escherichia coli} PDB: 3k07_A 3k0i_A
3kso_A 3kss_A
Length = 1054
Score = 25.6 bits (57), Expect = 7.7
Identities = 7/32 (21%), Positives = 12/32 (37%), Gaps = 5/32 (15%)
Query: 116 KRITLPIEQDL-GRPGLDK----SFYGDRQTT 142
++T P+ + PG S +GD
Sbjct: 70 NQVTYPLTTTMLSVPGAKTVRGFSQFGDSYVY 101
>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein,
protein binding; NMR {Homo sapiens}
Length = 83
Score = 24.4 bits (53), Expect = 8.2
Identities = 8/33 (24%), Positives = 13/33 (39%), Gaps = 3/33 (9%)
Query: 5 LADYTAA-NTTELSVHKGQQVEVVHNSSAPPDW 36
L D+ + T L+V G + V+ P
Sbjct: 24 LKDFWNLHDPTALNVRAGDVITVL--EQHPDGR 54
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.312 0.128 0.389
Gapped
Lambda K H
0.267 0.0775 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,168,679
Number of extensions: 112318
Number of successful extensions: 454
Number of sequences better than 10.0: 1
Number of HSP's gapped: 444
Number of HSP's successfully gapped: 355
Length of query: 147
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 62
Effective length of database: 4,328,508
Effective search space: 268367496
Effective search space used: 268367496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (24.1 bits)