BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12865
(227 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P97924|KALRN_RAT Kalirin OS=Rattus norvegicus GN=Kalrn PE=1 SV=3
Length = 2959
Score = 114 bits (286), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 62/123 (50%), Positives = 81/123 (65%), Gaps = 10/123 (8%)
Query: 2 KGRLMTSELGVTEHIEGDECKFAVWTGRAPISDCRILLKASSLEAKQLWVKRLREVIQET 61
K +L+TSELGVTEH+EGD CKFA+W+GR P SD + +LKAS++E KQ W+K +REVIQE
Sbjct: 1496 KNKLLTSELGVTEHVEGDPCKFALWSGRTPSSDNKTVLKASNIETKQEWIKNIREVIQER 1555
Query: 62 YFSSALPLAAP---PKSPAKLKSRSNQPNMEDEDNCDRG-------SLASYGSGNTTDSD 111
L P PK+PAKL++ S + +ED D+ G S+AS S NT +SD
Sbjct: 1556 IIHLKGALKEPIQLPKTPAKLRNNSKRDGVEDGDSQGDGSSQPDTISIASRTSQNTVESD 1615
Query: 112 KAS 114
K S
Sbjct: 1616 KLS 1618
Score = 57.4 bits (137), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 50/92 (54%), Gaps = 10/92 (10%)
Query: 146 KSPASASSLEAKQLWVKRLREVIQETYFSSALPLAAP---PKSPAKLKSRSNQPNMEDED 202
K+ AS++E KQ W+K +REVIQE L P PK+PAKL++ S + +ED D
Sbjct: 1530 KTVLKASNIETKQEWIKNIREVIQERIIHLKGALKEPIQLPKTPAKLRNNSKRDGVEDGD 1589
Query: 203 NCDRG-------SLASYGSGNTTDSDKPLTAC 227
+ G S+AS S NT +SDK C
Sbjct: 1590 SQGDGSSQPDTISIASRTSQNTVESDKLSGGC 1621
>sp|A2CG49|KALRN_MOUSE Kalirin OS=Mus musculus GN=Kalrn PE=1 SV=1
Length = 2964
Score = 114 bits (286), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 62/123 (50%), Positives = 81/123 (65%), Gaps = 10/123 (8%)
Query: 2 KGRLMTSELGVTEHIEGDECKFAVWTGRAPISDCRILLKASSLEAKQLWVKRLREVIQET 61
K +L+TSELGVTEH+EGD CKFA+W+GR P SD + +LKAS++E KQ W+K +REVIQE
Sbjct: 1496 KNKLLTSELGVTEHVEGDPCKFALWSGRTPSSDNKTVLKASNIETKQEWIKNIREVIQER 1555
Query: 62 YFSSALPLAAP---PKSPAKLKSRSNQPNMEDEDNCDRG-------SLASYGSGNTTDSD 111
L P PK+PAKL++ S + +ED D+ G S+AS S NT +SD
Sbjct: 1556 IIHLKGALKEPIQLPKTPAKLRNNSKRDGVEDGDSQGDGSSQPDTISIASRTSQNTVESD 1615
Query: 112 KAS 114
K S
Sbjct: 1616 KLS 1618
Score = 57.4 bits (137), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 50/92 (54%), Gaps = 10/92 (10%)
Query: 146 KSPASASSLEAKQLWVKRLREVIQETYFSSALPLAAP---PKSPAKLKSRSNQPNMEDED 202
K+ AS++E KQ W+K +REVIQE L P PK+PAKL++ S + +ED D
Sbjct: 1530 KTVLKASNIETKQEWIKNIREVIQERIIHLKGALKEPIQLPKTPAKLRNNSKRDGVEDGD 1589
Query: 203 NCDRG-------SLASYGSGNTTDSDKPLTAC 227
+ G S+AS S NT +SDK C
Sbjct: 1590 SQGDGSSQPDTISIASRTSQNTVESDKLSGGC 1621
Score = 32.7 bits (73), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 36/59 (61%), Gaps = 3/59 (5%)
Query: 1 MKGRLMTSELGVTEHIEGDECKFAVWTGRAPISDCRILLKASSLEAKQLWVKRLREVIQ 59
K + + L + ++++GD CKFA+ + R++L+A++ + +Q WV+ + +V++
Sbjct: 2142 FKRSIKMNYLVLEDNVDGDPCKFALMNRE---TSERVILQAANSDIQQAWVQDINQVLE 2197
>sp|O60229|KALRN_HUMAN Kalirin OS=Homo sapiens GN=KALRN PE=1 SV=2
Length = 2985
Score = 114 bits (284), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 62/123 (50%), Positives = 80/123 (65%), Gaps = 10/123 (8%)
Query: 2 KGRLMTSELGVTEHIEGDECKFAVWTGRAPISDCRILLKASSLEAKQLWVKRLREVIQET 61
K +L+TSELGVTEH+EGD CKFA+W+GR P SD + +LKAS++E KQ W+K +REVIQE
Sbjct: 1523 KNKLLTSELGVTEHVEGDPCKFALWSGRTPSSDNKTVLKASNIETKQEWIKNIREVIQER 1582
Query: 62 YFSSALPLAAP---PKSPAKLKSRSNQPNMEDEDNCDRG-------SLASYGSGNTTDSD 111
L P PK+PAK ++ S + +ED D+ G S+AS S NT DSD
Sbjct: 1583 IIHLKGALKEPLQLPKTPAKQRNNSKRDGVEDIDSQGDGSSQPDTISIASRTSQNTVDSD 1642
Query: 112 KAS 114
K S
Sbjct: 1643 KLS 1645
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 49/92 (53%), Gaps = 10/92 (10%)
Query: 146 KSPASASSLEAKQLWVKRLREVIQETYFSSALPLAAP---PKSPAKLKSRSNQPNMEDED 202
K+ AS++E KQ W+K +REVIQE L P PK+PAK ++ S + +ED D
Sbjct: 1557 KTVLKASNIETKQEWIKNIREVIQERIIHLKGALKEPLQLPKTPAKQRNNSKRDGVEDID 1616
Query: 203 NCDRG-------SLASYGSGNTTDSDKPLTAC 227
+ G S+AS S NT DSDK C
Sbjct: 1617 SQGDGSSQPDTISIASRTSQNTVDSDKLSGGC 1648
Score = 31.6 bits (70), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Query: 1 MKGRLMTSELGVTEHIEGDECKFAVWTGRAPISDCRILLKASSLEAKQLWVKRLREVIQ 59
K + + L + E+++ D CKFA+ + R++L+A++ + +Q WV+ + +V++
Sbjct: 2170 FKRSIKMNYLVLEENVDNDPCKFALMNRE---TSERVVLQAANADIQQAWVQDINQVLE 2225
>sp|Q1LUA6|TRIO_DANRE Triple functional domain protein OS=Danio rerio GN=trio PE=3 SV=1
Length = 3028
Score = 112 bits (280), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 62/121 (51%), Positives = 78/121 (64%), Gaps = 8/121 (6%)
Query: 2 KGRLMTSELGVTEHIEGDECKFAVWTGRAPISDCRILLKASSLEAKQLWVKRLREVIQE- 60
K +L TSELGVTEH+EGD CKFA+W GR P SD +I+LKAS +E KQ W+K +REVIQE
Sbjct: 1485 KSKLFTSELGVTEHVEGDPCKFALWVGRTPTSDNKIVLKASGIENKQDWIKHIREVIQER 1544
Query: 61 -TYFSSAL--PLAAPPKSPAKLKSRSNQPNMEDEDNC----DRGSLASYGSGNTTDSDKA 113
+ AL P+ P S AK K R + +++ + + D SLAS S NT DSDK
Sbjct: 1545 TVHLKGALKEPIHIPKASTAKHKGRRDGEDLDSQGDGSSQPDTISLASRTSQNTLDSDKL 1604
Query: 114 S 114
S
Sbjct: 1605 S 1605
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 46/85 (54%), Gaps = 8/85 (9%)
Query: 151 ASSLEAKQLWVKRLREVIQE--TYFSSAL--PLAAPPKSPAKLKSRSNQPNMEDEDNC-- 204
AS +E KQ W+K +REVIQE + AL P+ P S AK K R + +++ + +
Sbjct: 1524 ASGIENKQDWIKHIREVIQERTVHLKGALKEPIHIPKASTAKHKGRRDGEDLDSQGDGSS 1583
Query: 205 --DRGSLASYGSGNTTDSDKPLTAC 227
D SLAS S NT DSDK C
Sbjct: 1584 QPDTISLASRTSQNTLDSDKLSGGC 1608
Score = 32.3 bits (72), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 10 LGVTEHIEGDECKFAVWTGRAPISDCRILLKASSLEAKQLWVKRLREVIQ-ETYFSSAL 67
LG+ + ++GD CKFA+ + + S +L +S +Q+W+ ++ ++++ + F +AL
Sbjct: 2174 LGLEDSVDGDPCKFALTSRTSNSSKDAFILHSSHPGVRQVWMLQISQILESQRNFLNAL 2232
>sp|O75962|TRIO_HUMAN Triple functional domain protein OS=Homo sapiens GN=TRIO PE=1 SV=2
Length = 3097
Score = 109 bits (272), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/122 (50%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 2 KGRLMTSELGVTEHIEGDECKFAVWTGRAPISDCRILLKASSLEAKQLWVKRLREVIQE- 60
K +L TSELGVTEH+EGD CKFA+W GR P SD +I+LKASS+E KQ W+K +REVIQE
Sbjct: 1534 KSKLFTSELGVTEHVEGDPCKFALWVGRTPTSDNKIVLKASSIENKQDWIKHIREVIQER 1593
Query: 61 -TYFSSAL--PLAAPPKSPA-KLKSRSNQPNMEDEDNC----DRGSLASYGSGNTTDSDK 112
+ AL P+ P +PA + K R + +++ + + D S+AS S NT DSDK
Sbjct: 1594 TIHLKGALKEPIHIPKTAPATRQKGRRDGEDLDSQGDGSSQPDTISIASRTSQNTLDSDK 1653
Query: 113 AS 114
S
Sbjct: 1654 LS 1655
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 48/86 (55%), Gaps = 9/86 (10%)
Query: 151 ASSLEAKQLWVKRLREVIQE--TYFSSAL--PLAAPPKSPA-KLKSRSNQPNMEDEDNC- 204
ASS+E KQ W+K +REVIQE + AL P+ P +PA + K R + +++ + +
Sbjct: 1573 ASSIENKQDWIKHIREVIQERTIHLKGALKEPIHIPKTAPATRQKGRRDGEDLDSQGDGS 1632
Query: 205 ---DRGSLASYGSGNTTDSDKPLTAC 227
D S+AS S NT DSDK C
Sbjct: 1633 SQPDTISIASRTSQNTLDSDKLSGGC 1658
Score = 40.0 bits (92), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 32/55 (58%), Gaps = 9/55 (16%)
Query: 105 GNTTDSD-----KASSLEAKQLWVKRLREVIQE--TYFSSAL--PLAAPPKSPAS 150
G T SD KASS+E KQ W+K +REVIQE + AL P+ P +PA+
Sbjct: 1560 GRTPTSDNKIVLKASSIENKQDWIKHIREVIQERTIHLKGALKEPIHIPKTAPAT 1614
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 1 MKGRLMTSELGVTEHIEGDECKFAVWTGRAPISDCRILLKASSLEAKQLWVKRLREVIQ- 59
K + S L + E++E D CKFA+ + + + +L +SS +Q W+ + ++++
Sbjct: 2214 FKNSIKVSCLCLEENVENDPCKFALTSRTGDVVET-FILHSSSPSVRQTWIHEINQILEN 2272
Query: 60 ETYFSSAL 67
+ F +AL
Sbjct: 2273 QRNFLNAL 2280
>sp|Q0KL02|TRIO_MOUSE Triple functional domain protein OS=Mus musculus GN=Trio PE=1 SV=3
Length = 3102
Score = 109 bits (272), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/122 (50%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 2 KGRLMTSELGVTEHIEGDECKFAVWTGRAPISDCRILLKASSLEAKQLWVKRLREVIQE- 60
K +L TSELGVTEH+EGD CKFA+W GR P SD +I+LKASS+E KQ W+K +REVIQE
Sbjct: 1534 KSKLFTSELGVTEHVEGDPCKFALWVGRTPTSDNKIVLKASSIENKQDWIKHIREVIQER 1593
Query: 61 -TYFSSAL--PLAAPPKSP-AKLKSRSNQPNMEDEDNC----DRGSLASYGSGNTTDSDK 112
+ AL P+ P +P A+ K R + +++ + + D S+AS S NT DSDK
Sbjct: 1594 TVHLRGALKEPIHIPKTAPAARQKGRRDGEDLDSQGDGSSQPDTISIASRTSQNTLDSDK 1653
Query: 113 AS 114
S
Sbjct: 1654 LS 1655
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 48/86 (55%), Gaps = 9/86 (10%)
Query: 151 ASSLEAKQLWVKRLREVIQE--TYFSSAL--PLAAPPKSP-AKLKSRSNQPNMEDEDNC- 204
ASS+E KQ W+K +REVIQE + AL P+ P +P A+ K R + +++ + +
Sbjct: 1573 ASSIENKQDWIKHIREVIQERTVHLRGALKEPIHIPKTAPAARQKGRRDGEDLDSQGDGS 1632
Query: 205 ---DRGSLASYGSGNTTDSDKPLTAC 227
D S+AS S NT DSDK C
Sbjct: 1633 SQPDTISIASRTSQNTLDSDKLSGGC 1658
Score = 39.7 bits (91), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 32/55 (58%), Gaps = 9/55 (16%)
Query: 105 GNTTDSD-----KASSLEAKQLWVKRLREVIQE--TYFSSAL--PLAAPPKSPAS 150
G T SD KASS+E KQ W+K +REVIQE + AL P+ P +PA+
Sbjct: 1560 GRTPTSDNKIVLKASSIENKQDWIKHIREVIQERTVHLRGALKEPIHIPKTAPAA 1614
Score = 32.0 bits (71), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 1 MKGRLMTSELGVTEHIEGDECKFAVWTGRAPISDCRILLKASSLEAKQLWVKRLREVIQ- 59
K + S L + E++E D CKFA+ T R + +L +SS +Q W+ + ++++
Sbjct: 2214 FKNSIKVSCLCLEENVESDPCKFAL-TSRTGDAVETFVLHSSSPSVRQTWIHEINQILEN 2272
Query: 60 ETYFSSAL 67
+ F +AL
Sbjct: 2273 QRNFLNAL 2280
>sp|P10911|MCF2_HUMAN Proto-oncogene DBL OS=Homo sapiens GN=MCF2 PE=1 SV=3
Length = 925
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 33/50 (66%), Gaps = 3/50 (6%)
Query: 9 ELGVTEHIEGDECKFAVWTGRAPISDCRILLKASSLEAKQLWVKRLREVI 58
E+G+TE+++GD KF +W G + +++AS+++ K W+K +R ++
Sbjct: 762 EVGITEYVKGDNRKFEIWYGE---KEEVYIVQASNVDVKMTWLKEIRNIL 808
>sp|Q9CWR0|ARHGP_MOUSE Rho guanine nucleotide exchange factor 25 OS=Mus musculus
GN=Arhgef25 PE=1 SV=1
Length = 618
Score = 37.7 bits (86), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 49/88 (55%), Gaps = 9/88 (10%)
Query: 2 KGRLMTSELGVTEHIEGDECKFAVWTGRAPISDC-RILLKASSLEAKQLWVKRLREVIQ- 59
K + S LG+ +++G+ C+FA+ T R P R +L+AS Q W+K++ ++++
Sbjct: 448 KNSIKVSCLGLEGNLQGNPCRFAL-TSRGPEGGIQRYVLQASDPAVSQAWIKQVAQILES 506
Query: 60 ETYFSSALPLAAPPKSPAKLKSRSNQPN 87
+ F +AL +SP + + R +Q N
Sbjct: 507 QRDFLNAL------QSPIEYQRRESQTN 528
>sp|Q86VW2|ARHGP_HUMAN Rho guanine nucleotide exchange factor 25 OS=Homo sapiens
GN=ARHGEF25 PE=1 SV=2
Length = 580
Score = 37.7 bits (86), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 48/88 (54%), Gaps = 9/88 (10%)
Query: 2 KGRLMTSELGVTEHIEGDECKFAVWTGRAPISDC-RILLKASSLEAKQLWVKRLREVIQ- 59
K + S LG+ +++GD C+FA+ T R P R +L+A+ Q W+K + ++++
Sbjct: 409 KNSIKVSCLGLEGNLQGDPCRFAL-TSRGPEGGIQRYVLQAADPAISQAWIKHVAQILES 467
Query: 60 ETYFSSALPLAAPPKSPAKLKSRSNQPN 87
+ F +AL +SP + + R +Q N
Sbjct: 468 QRDFLNAL------QSPIEYQRRESQTN 489
>sp|O15068|MCF2L_HUMAN Guanine nucleotide exchange factor DBS OS=Homo sapiens GN=MCF2L PE=1
SV=2
Length = 1137
Score = 35.4 bits (80), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 23/119 (19%)
Query: 2 KGRLMTSELGVTEHIEGDECKFAVW-TGRAPISDCRILLKASSLEAKQLWVKRLREVIQE 60
K L + +G+TE+++GD KF +W R + +++A + E K WV +R+V+
Sbjct: 891 KQSLNMAAVGITENVKGDAKKFEIWYNAREEV----YIVQAPTPEIKAAWVNEIRKVLTS 946
Query: 61 TY-------------FSSALPLAAPPKSPAKLKSRSNQPNME--DEDNCDRGSLASYGS 104
S +LPL AP + SR N N++ +E D SL Y S
Sbjct: 947 QLQACREASQHRALEQSQSLPLPAPTSTSP---SRGNSRNIKKLEERKTDPLSLEGYVS 1002
>sp|Q64096|MCF2L_MOUSE Guanine nucleotide exchange factor DBS OS=Mus musculus GN=Mcf2l PE=1
SV=2
Length = 1149
Score = 35.4 bits (80), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 21/118 (17%)
Query: 2 KGRLMTSELGVTEHIEGDECKFAVW-TGRAPISDCRILLKASSLEAKQLWVKRLREVIQE 60
K L + +G+TE+++GD KF +W R + +++A + E K WV +R+V+
Sbjct: 892 KQSLNMTAVGITENVKGDTKKFEIWYNAREEV----YIIQAPTPEIKAAWVNEIRKVLTS 947
Query: 61 TY-------------FSSALPLAAP-PKSPAKLKSRSNQPNMEDEDNCDRGSLASYGS 104
S +LPL P SP K +R N +ED D SL Y S
Sbjct: 948 QLQACREASQHRALEQSHSLPLPTPSSTSPTKGNTR-NVKKLEDRKT-DPLSLEGYVS 1003
>sp|Q63406|MCF2L_RAT Guanine nucleotide exchange factor DBS OS=Rattus norvegicus GN=Mcf2l
PE=2 SV=3
Length = 1149
Score = 35.0 bits (79), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 53/118 (44%), Gaps = 23/118 (19%)
Query: 2 KGRLMTSELGVTEHIEGDECKFAVW-TGRAPISDCRILLKASSLEAKQLWVKRLREVIQE 60
K L + +G+TE+++GD KF +W R + +++A + E K WV +R+V+
Sbjct: 892 KQSLNMTAVGITENVKGDTKKFEIWYNAREEV----YIIQAPTPEIKAAWVNEIRKVLTS 947
Query: 61 TY-------------FSSALPLAAPP-KSPAKLKSRSNQPNMEDEDN---CDRGSLAS 101
S +LPL P SP K +R N +ED C G ++S
Sbjct: 948 QLQACREASQHRALEQSHSLPLPTPASTSPTKGSTR-NVKKLEDRKTDPLCLEGCVSS 1004
>sp|Q96PX9|PKH4B_HUMAN Pleckstrin homology domain-containing family G member 4B OS=Homo
sapiens GN=PLEKHG4B PE=2 SV=4
Length = 1271
Score = 34.3 bits (77), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%)
Query: 2 KGRLMTSELGVTEHIEGDECKFAVWTGRAPISDCRILLKASSLEAKQLWVKRLREVI 58
K T+E+G+TE++ +F +W R S +L+ASS E K W + ++
Sbjct: 1047 KQSFKTAEIGMTENVGDSGLRFEIWFRRRRKSQDTYILQASSAEVKSAWTDVIGRIL 1103
>sp|Q32LE6|DMRTD_BOVIN Doublesex- and mab-3-related transcription factor C2 OS=Bos taurus
GN=DMRTC2 PE=2 SV=1
Length = 370
Score = 33.9 bits (76), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 11 GVTEHIEGDE--CKFAVWTGRAPISDCRILLKASSLEAKQLWVKRLREVIQETYFSSALP 68
GVT H++G + C F C ++L+ + A Q+ ++R +E + + + L
Sbjct: 49 GVTAHLKGHKRLCLFQACE----CHKCVLILERRRVMAAQVALRRQQEAQLKRHLTQGLM 104
Query: 69 L-AAPPKSPAKLKSRSNQPNMED 90
AAPP++P+++K QP +
Sbjct: 105 RGAAPPRAPSRVKKGVTQPGVHS 127
>sp|O15069|NACAD_HUMAN NAC-alpha domain-containing protein 1 OS=Homo sapiens GN=NACAD PE=1
SV=3
Length = 1562
Score = 30.8 bits (68), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 8/78 (10%)
Query: 40 KASSLEAKQLWVKRLREVIQETYFSSALPLAAPPKSPAKLKSRSNQPNMEDEDNCDRGSL 99
K +S++AK L ++ L +P + P+SPA + S EDED+ + S
Sbjct: 1309 KVASMDAKDLALQILPPC--------QVPPPSGPQSPAGPQGLSAPEQQEDEDSLEEDSP 1360
Query: 100 ASYGSGNTTDSDKASSLE 117
+ GSG +DS SS E
Sbjct: 1361 RALGSGQHSDSHGESSAE 1378
>sp|Q5VST9|OBSCN_HUMAN Obscurin OS=Homo sapiens GN=OBSCN PE=1 SV=3
Length = 7968
Score = 30.8 bits (68), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 1 MKGRLMTSELGVTEHIEGDECKFAVWTGRAPISDCRILLKASSLEAKQLWVKRLREVIQE 60
+ + S + + + +EGD+ F VW R S + LL+A + K WVK + + Q
Sbjct: 5947 FRNMMKLSSIDLNDQVEGDDRAFEVWQERED-SVRKYLLQARTAIIKSSWVKEICGIQQR 6005
Query: 61 TYFSSALPLAAPP 73
ALP+ PP
Sbjct: 6006 L----ALPVWRPP 6014
>sp|O55036|TERF1_CRIGR Telomeric repeat-binding factor 1 (Fragment) OS=Cricetulus griseus
GN=TERF1 PE=2 SV=1
Length = 438
Score = 30.4 bits (67), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 59/137 (43%), Gaps = 19/137 (13%)
Query: 84 NQPNMEDEDNCD-RGSLASYGSGNTTDSDKASSL--EAKQLWVKRLREVIQETYFSSALP 140
N ME E N D R S++ S T S+ SL K L++ +L+ Q+ +
Sbjct: 281 NDVEMETEANLDTRKSVSDKQSAVTESSEGTVSLLRSHKNLFLSKLQHGTQQQDLNKKER 340
Query: 141 LAAPPKSPASASSLEAKQLWVKRLREVIQETYFSSALPLA-APPKSPAKLKSRSNQPNME 199
P+S K+ +E + T S +P++ + P +P K ++R Q +
Sbjct: 341 RVGTPQS-------------TKKKKESRRAT--ESRIPVSKSQPVTPEKHRARKRQAWLW 385
Query: 200 DEDNCDRGSLASYGSGN 216
+ED R + YG GN
Sbjct: 386 EEDKNLRSGVRKYGEGN 402
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.125 0.360
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,073,024
Number of Sequences: 539616
Number of extensions: 3180313
Number of successful extensions: 8558
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 8467
Number of HSP's gapped (non-prelim): 112
length of query: 227
length of database: 191,569,459
effective HSP length: 113
effective length of query: 114
effective length of database: 130,592,851
effective search space: 14887585014
effective search space used: 14887585014
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 59 (27.3 bits)