Query psy12865
Match_columns 227
No_of_seqs 176 out of 269
Neff 4.5
Searched_HMMs 46136
Date Fri Aug 16 21:44:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12865.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12865hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4240|consensus 99.9 6.4E-24 1.4E-28 216.1 6.8 131 1-144 874-1018(1025)
2 cd01232 PH_TRIO Trio pleckstri 99.8 5.3E-21 1.2E-25 153.0 6.0 60 1-60 55-114 (114)
3 cd01227 PH_Dbs Dbs (DBL's big 99.8 1.2E-20 2.6E-25 154.9 5.6 58 1-61 61-118 (133)
4 cd01222 PH_clg Clg (common-sit 99.4 3.3E-13 7E-18 105.4 5.1 57 1-59 40-96 (97)
5 KOG0689|consensus 99.3 4.8E-13 1E-17 128.3 3.4 69 1-70 304-375 (448)
6 KOG4240|consensus 99.2 1.1E-11 2.5E-16 127.4 4.3 97 129-225 889-993 (1025)
7 cd01219 PH_FGD FGD (faciogenit 96.8 0.0023 5E-08 49.4 4.9 52 3-59 48-100 (101)
8 cd01220 PH_CDEP Chondrocyte-de 96.6 0.0039 8.4E-08 48.6 5.1 50 5-59 47-98 (99)
9 cd01261 PH_SOS Son of Sevenles 96.5 0.0044 9.6E-08 49.8 4.8 55 1-59 54-110 (112)
10 cd01232 PH_TRIO Trio pleckstri 96.5 0.0027 5.9E-08 51.1 3.3 26 145-170 89-114 (114)
11 smart00233 PH Pleckstrin homol 96.1 0.019 4.1E-07 40.0 5.9 51 4-58 47-101 (102)
12 cd01247 PH_GPBP Goodpasture an 96.0 0.014 3.1E-07 44.5 4.8 47 5-56 44-90 (91)
13 PF00169 PH: PH domain; Inter 95.8 0.021 4.5E-07 40.9 4.9 50 5-58 47-103 (104)
14 cd01265 PH_PARIS-1 PARIS-1 ple 95.6 0.028 6.1E-07 42.9 5.2 47 6-57 47-93 (95)
15 cd01227 PH_Dbs Dbs (DBL's big 95.3 0.014 3.1E-07 48.3 2.9 35 143-177 90-126 (133)
16 cd01223 PH_Vav Vav pleckstrin 95.3 0.041 8.9E-07 44.8 5.3 55 1-58 49-111 (116)
17 cd01218 PH_phafin2 Phafin2 Pl 95.2 0.048 1E-06 43.2 5.5 37 20-61 65-101 (104)
18 cd01233 Unc104 Unc-104 pleckst 95.1 0.046 1E-06 41.9 5.1 35 19-58 64-98 (100)
19 cd01222 PH_clg Clg (common-sit 95.0 0.018 3.9E-07 45.1 2.4 28 143-170 69-97 (97)
20 cd00821 PH Pleckstrin homology 94.9 0.066 1.4E-06 36.9 5.0 49 4-56 45-95 (96)
21 cd01238 PH_Tec Tec pleckstrin 94.6 0.073 1.6E-06 41.4 5.0 34 19-57 73-106 (106)
22 cd01246 PH_oxysterol_bp Oxyste 94.5 0.092 2E-06 37.9 5.0 36 17-56 55-90 (91)
23 cd01244 PH_RasGAP_CG9209 RAS_G 94.2 0.1 2.2E-06 40.8 4.9 50 3-57 45-98 (98)
24 cd01251 PH_centaurin_alpha Cen 93.6 0.18 3.8E-06 39.1 5.3 34 22-60 69-102 (103)
25 cd01264 PH_melted Melted pleck 93.2 0.2 4.3E-06 39.6 5.2 33 20-57 68-100 (101)
26 PF00018 SH3_1: SH3 domain; I 93.2 0.045 9.8E-07 36.5 1.3 27 116-142 2-30 (48)
27 PF14604 SH3_9: Variant SH3 do 92.6 0.074 1.6E-06 36.2 1.7 25 116-140 1-27 (49)
28 cd01252 PH_cytohesin Cytohesin 92.5 0.34 7.3E-06 38.3 5.5 29 35-63 90-118 (125)
29 cd01266 PH_Gab Gab (Grb2-assoc 92.2 0.33 7E-06 37.6 5.0 30 23-57 78-107 (108)
30 cd00900 PH-like Pleckstrin hom 92.1 0.41 8.8E-06 33.2 5.1 36 19-56 63-98 (99)
31 cd01235 PH_SETbf Set binding f 92.0 0.39 8.5E-06 35.7 5.1 34 20-58 68-101 (101)
32 cd01250 PH_centaurin Centaurin 91.6 0.44 9.5E-06 34.5 4.9 33 19-56 61-93 (94)
33 cd01253 PH_beta_spectrin Beta- 90.7 0.53 1.1E-05 35.7 4.8 33 19-55 70-102 (104)
34 PF07653 SH3_2: Variant SH3 do 89.8 0.21 4.6E-06 34.2 1.7 23 115-137 3-27 (55)
35 PF15405 PH_5: Pleckstrin homo 89.5 0.61 1.3E-05 38.3 4.5 44 13-56 90-133 (135)
36 cd01245 PH_RasGAP_CG5898 RAS G 89.0 0.76 1.6E-05 36.1 4.5 35 18-56 63-97 (98)
37 cd01260 PH_CNK Connector enhan 88.1 1.3 2.9E-05 33.0 5.2 34 19-56 62-95 (96)
38 smart00326 SH3 Src homology 3 86.9 0.33 7.2E-06 31.4 1.1 26 115-140 6-33 (58)
39 cd01224 PH_Collybistin Collybi 86.6 1.4 3E-05 35.6 4.8 53 1-56 45-105 (109)
40 cd00174 SH3 Src homology 3 dom 86.3 0.35 7.6E-06 31.1 1.0 25 116-140 4-30 (54)
41 PF15409 PH_8: Pleckstrin homo 86.0 1.6 3.4E-05 34.0 4.6 38 15-57 51-88 (89)
42 KOG3518|consensus 84.3 0.9 1.9E-05 43.9 3.1 60 1-62 376-436 (521)
43 cd01255 PH_TIAM TIAM Pleckstri 81.8 3.1 6.7E-05 35.6 5.0 61 1-61 91-157 (160)
44 cd01249 PH_oligophrenin Oligop 81.7 2.3 5.1E-05 34.0 4.1 30 22-54 72-101 (104)
45 cd01230 PH_EFA6 EFA6 Pleckstri 81.4 3.3 7.2E-05 33.3 4.9 35 20-58 77-111 (117)
46 cd01226 PH_exo84 Exocyst compl 80.0 2.3 5E-05 33.8 3.5 32 21-57 66-97 (100)
47 cd01257 PH_IRS Insulin recepto 78.8 2.3 5E-05 33.3 3.2 32 21-57 70-101 (101)
48 cd01225 PH_Cool_Pix Cool (clon 78.3 4.4 9.6E-05 32.9 4.7 53 1-57 54-108 (111)
49 PTZ00283 serine/threonine prot 76.8 3.6 7.8E-05 39.7 4.5 36 19-58 454-489 (496)
50 cd01231 PH_Lnk LNK-family Plec 76.6 4 8.6E-05 33.0 3.9 34 19-56 73-106 (107)
51 PF15410 PH_9: Pleckstrin homo 75.7 6.2 0.00013 31.2 4.8 34 20-57 84-117 (119)
52 cd01236 PH_outspread Outspread 75.6 6.9 0.00015 30.9 5.0 34 18-56 69-102 (104)
53 cd01220 PH_CDEP Chondrocyte-de 73.4 2.9 6.3E-05 32.5 2.4 23 147-169 76-98 (99)
54 cd01228 PH_BCR-related BCR (br 65.2 8.1 0.00018 30.7 3.3 25 35-59 71-95 (96)
55 cd01241 PH_Akt Akt pleckstrin 65.0 21 0.00047 27.3 5.6 36 20-57 65-101 (102)
56 cd01219 PH_FGD FGD (faciogenit 63.4 6.1 0.00013 30.3 2.3 24 147-170 78-101 (101)
57 KOG1264|consensus 61.6 7.9 0.00017 41.3 3.4 36 134-169 876-911 (1267)
58 cd01221 PH_ephexin Ephexin Ple 56.9 17 0.00037 29.9 4.0 37 19-55 82-119 (125)
59 PF15406 PH_6: Pleckstrin homo 53.5 22 0.00048 29.0 4.0 39 12-55 72-110 (112)
60 KOG4424|consensus 53.5 25 0.00055 36.0 5.3 38 19-61 335-372 (623)
61 PF00169 PH: PH domain; Inter 50.2 12 0.00027 26.2 2.0 23 146-168 81-103 (104)
62 smart00233 PH Pleckstrin homol 47.1 26 0.00055 23.8 3.1 23 146-168 79-101 (102)
63 cd01218 PH_phafin2 Phafin2 Pl 46.3 17 0.00038 28.7 2.4 21 150-170 80-100 (104)
64 cd01235 PH_SETbf Set binding f 45.7 16 0.00034 27.0 1.9 20 149-168 82-101 (101)
65 cd01254 PH_PLD Phospholipase D 44.1 56 0.0012 25.9 5.0 34 18-56 87-120 (121)
66 cd01242 PH_ROK Rok (Rho- assoc 44.1 45 0.00097 27.2 4.4 39 17-58 72-110 (112)
67 COG1093 SUI2 Translation initi 42.2 24 0.00053 32.7 3.0 36 131-171 26-61 (269)
68 KOG0521|consensus 41.4 52 0.0011 34.7 5.6 39 18-61 333-371 (785)
69 KOG4226|consensus 40.4 19 0.00041 34.1 2.0 27 119-145 199-227 (379)
70 cd01251 PH_centaurin_alpha Cen 39.4 67 0.0014 24.6 4.6 20 150-169 82-101 (103)
71 cd01266 PH_Gab Gab (Grb2-assoc 39.4 23 0.0005 27.2 2.1 21 147-167 87-107 (108)
72 KOG3520|consensus 38.9 36 0.00078 37.4 4.0 55 5-61 670-724 (1167)
73 cd01226 PH_exo84 Exocyst compl 37.7 52 0.0011 26.2 3.8 19 150-168 80-98 (100)
74 cd01243 PH_MRCK MRCK (myotonic 36.1 82 0.0018 26.1 4.8 40 18-57 77-118 (122)
75 KOG2778|consensus 35.3 26 0.00057 33.2 2.1 21 152-172 186-206 (328)
76 PF08458 PH_2: Plant pleckstri 33.9 1.1E+02 0.0024 24.8 5.2 37 20-61 70-106 (110)
77 PF15413 PH_11: Pleckstrin hom 32.0 1E+02 0.0023 24.0 4.8 33 19-56 79-111 (112)
78 cd01248 PH_PLC Phospholipase C 31.1 96 0.0021 24.0 4.4 39 18-57 77-115 (115)
79 KOG0930|consensus 29.2 62 0.0013 30.9 3.4 25 36-60 353-377 (395)
80 PTZ00267 NIMA-related protein 27.8 71 0.0015 30.4 3.7 25 34-58 452-476 (478)
81 cd01228 PH_BCR-related BCR (br 26.3 55 0.0012 26.1 2.2 27 142-168 67-94 (96)
82 PF15277 Sec3-PIP2_bind: Exocy 25.5 2.8E+02 0.006 21.2 6.0 48 6-59 40-89 (91)
83 PF14593 PH_3: PH domain; PDB: 24.8 1.5E+02 0.0032 23.6 4.4 37 19-61 66-102 (104)
84 cd01238 PH_Tec Tec pleckstrin 22.7 53 0.0011 25.3 1.5 18 150-167 89-106 (106)
85 cd01240 PH_beta-ARK Beta adren 22.4 91 0.002 25.7 2.8 45 16-65 61-106 (116)
86 KOG4278|consensus 22.0 62 0.0013 34.4 2.2 46 113-162 92-139 (1157)
87 KOG2996|consensus 21.4 65 0.0014 33.6 2.2 40 103-142 794-838 (865)
88 cd01237 Unc112 Unc-112 pleckst 21.1 2.3E+02 0.0049 22.8 4.9 37 19-55 63-100 (106)
89 cd01264 PH_melted Melted pleck 20.4 74 0.0016 25.1 2.0 24 144-167 76-100 (101)
90 KOG0092|consensus 20.4 1.3E+02 0.0029 26.8 3.7 46 14-59 47-108 (200)
91 cd01263 PH_anillin Anillin Ple 20.3 2E+02 0.0043 23.4 4.5 21 36-56 101-121 (122)
No 1
>KOG4240|consensus
Probab=99.89 E-value=6.4e-24 Score=216.09 Aligned_cols=131 Identities=37% Similarity=0.476 Sum_probs=118.4
Q ss_pred CCCccccccccceeeccCCceeEEEecCCCCCCCceEEEEcCCHHHHHHHHHHHHHHHHhh--ccccCCCCCCCCCCccc
Q psy12865 1 MKGRLMTSELGVTEHIEGDECKFAVWTGRAPISDCRILLKASSLEAKQLWVKRLREVIQET--YFSSALPLAAPPKSPAK 78 (227)
Q Consensus 1 yK~slk~s~lGltE~VegD~~kFeiW~~r~~~s~~~~iLQAss~evK~~Wvk~IreiL~~q--~l~~alp~~~~~ks~~~ 78 (227)
||++++|+++||||||+||+|||+||.|+.+. .|+|||+++++|+.|+++||+++++| .+.+.-|.. .++++.+
T Consensus 874 ~~~~l~~~e~gite~v~Gd~~kf~~~~g~~~~---~~~~~a~~~~~K~~W~~~ir~~~~~~~~~~~~~~~~~-~~~~~~~ 949 (1025)
T KOG4240|consen 874 SKKKLPMSEVGITEHVEGDPCKFELWVGRTES---VIDLKASNHETKQKWVKEIREVLQERTILLKGKEQAQ-ALETLDK 949 (1025)
T ss_pred hhccCCHHhhcchhhcccCceEEEEeccCCCc---ceeeecCCcchhhhhccchHHHHHHHHHHhhhhhhhh-ccccccc
Confidence 57779999999999999999999999999765 79999999999999999999999999 455533777 7777778
Q ss_pred cccCCCCCC-------CCCCCCCcccceeecCCCCCCCcccccc---chhccccc--ceEEEEecceEEEecCCCCCC
Q psy12865 79 LKSRSNQPN-------MEDEDNCDRGSLASYGSGNTTDSDKASS---LEAKQLWV--KRLREVIQETYFSSALPLAAP 144 (227)
Q Consensus 79 ~~~~s~r~~-------~~~~s~~d~~sl~s~~s~n~~ds~k~~~---v~~d~~a~--~elsv~~gqtve~le~~~~~p 144 (227)
.++.++|++ ++..+||+|+++++|+|+|++||++.+. |.+||.++ +|| ++|+|+..|
T Consensus 950 ~~~~~~~~~~~~~~~~~~~~sq~~~~~~~~r~~~~~~~s~~~~~~~~~~~~~~~s~~~~l---------~~~~~~~~~ 1018 (1025)
T KOG4240|consen 950 ARSKLPRSGAEDLGSQGNFSSQPETISIASRTSVNSCDSEKSSEVTIVTADFDTSVSAEL---------IVERPHTDP 1018 (1025)
T ss_pred cccCCCCCchhccccccccccCCchhcccccccccccccccCCCcceeccCCccCcchhh---------ccccCCCCC
Confidence 999999998 4678999999999999999999999887 99999999 788 999999988
No 2
>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain. Trio pleckstrin homology (PH) domain. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.83 E-value=5.3e-21 Score=153.00 Aligned_cols=60 Identities=58% Similarity=1.079 Sum_probs=57.4
Q ss_pred CCCccccccccceeeccCCceeEEEecCCCCCCCceEEEEcCCHHHHHHHHHHHHHHHHh
Q psy12865 1 MKGRLMTSELGVTEHIEGDECKFAVWTGRAPISDCRILLKASSLEAKQLWVKRLREVIQE 60 (227)
Q Consensus 1 yK~slk~s~lGltE~VegD~~kFeiW~~r~~~s~~~~iLQAss~evK~~Wvk~IreiL~~ 60 (227)
||++|||++|||||+|+||+|||+||+++++.++++|||||+|+++|++|+++|++||++
T Consensus 55 yK~~ikls~l~l~e~v~gd~~kF~i~~~~~~~~~~~~ilqA~s~e~K~~W~~~I~~il~~ 114 (114)
T cd01232 55 YKSKLQVSKMGLTEHVEGDPCRFALWSGDPPISDNRIILKANSQETKQEWVKKIREILQE 114 (114)
T ss_pred EecceeeeeeEeEEccCCCCceEEEEeCCCCCCceEEEEECCCHHHHHHHHHHHHHHhhC
Confidence 899999999999999999999999999998767899999999999999999999999974
No 3
>cd01227 PH_Dbs Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs is a guanine nucleotide exchange factor (GEF), which contains spectrin repeats, a rhoGEF (DH) domain and a PH domain. The Dbs PH domain participates in binding to both the Cdc42 and RhoA GTPases. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.82 E-value=1.2e-20 Score=154.87 Aligned_cols=58 Identities=31% Similarity=0.628 Sum_probs=55.8
Q ss_pred CCCccccccccceeeccCCceeEEEecCCCCCCCceEEEEcCCHHHHHHHHHHHHHHHHhh
Q psy12865 1 MKGRLMTSELGVTEHIEGDECKFAVWTGRAPISDCRILLKASSLEAKQLWVKRLREVIQET 61 (227)
Q Consensus 1 yK~slk~s~lGltE~VegD~~kFeiW~~r~~~s~~~~iLQAss~evK~~Wvk~IreiL~~q 61 (227)
||++|||++|||||+|+||+||||||++++ .++|||||+|+|+|++|+++|++||++|
T Consensus 61 yK~~ikls~lglte~v~gd~~kFeiw~~~~---~~~yilqA~t~e~K~~Wv~~I~~iL~~Q 118 (133)
T cd01227 61 FKQSLKMTAVGITENVKGDTKKFEIWYNAR---EEVYILQAPTPEIKAAWVNEIRKVLTSQ 118 (133)
T ss_pred EeeeEEeecccccccCCCCccEEEEEeCCC---CcEEEEEcCCHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999884 4699999999999999999999999999
No 4
>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.40 E-value=3.3e-13 Score=105.44 Aligned_cols=57 Identities=25% Similarity=0.431 Sum_probs=52.6
Q ss_pred CCCccccccccceeeccCCceeEEEecCCCCCCCceEEEEcCCHHHHHHHHHHHHHHHH
Q psy12865 1 MKGRLMTSELGVTEHIEGDECKFAVWTGRAPISDCRILLKASSLEAKQLWVKRLREVIQ 59 (227)
Q Consensus 1 yK~slk~s~lGltE~VegD~~kFeiW~~r~~~s~~~~iLQAss~evK~~Wvk~IreiL~ 59 (227)
||+.|++++++|+||+.+|||+|+||....| +++|+|||+|+|.|+.|+++|+++|.
T Consensus 40 ~K~~i~~~~l~i~e~~~~d~~~F~v~~~~~p--~~~~~l~A~s~e~K~~W~~~i~~~i~ 96 (97)
T cd01222 40 FKAYIPCKNLMLVEHLPGEPLCFRVIPFDDP--KGALQLTARNREEKRIWTQQLKRAML 96 (97)
T ss_pred EEEEEEecceEEecCCCCCCcEEEEEecCCC--ceEEEEEecCHHHHHHHHHHHHHHhh
Confidence 7999999999999999999999999977643 46899999999999999999999975
No 5
>KOG0689|consensus
Probab=99.34 E-value=4.8e-13 Score=128.27 Aligned_cols=69 Identities=20% Similarity=0.420 Sum_probs=63.2
Q ss_pred CCCccccccccceeeccCCceeEEEecCCCCCCCceEEEEcCCHHHHHHHHHHHHHHHHhh-ccccCC--CCC
Q psy12865 1 MKGRLMTSELGVTEHIEGDECKFAVWTGRAPISDCRILLKASSLEAKQLWVKRLREVIQET-YFSSAL--PLA 70 (227)
Q Consensus 1 yK~slk~s~lGltE~VegD~~kFeiW~~r~~~s~~~~iLQAss~evK~~Wvk~IreiL~~q-~l~~al--p~~ 70 (227)
||++|||+++|+++++.+++++|+||++++. ..++|+|||.+.++|++|+++|.++||.| .+.+++ |++
T Consensus 304 yk~~ik~~~lgle~n~~~s~~rF~i~~r~~~-~~~~~vlqa~s~~~k~~W~~~i~~~l~~Q~a~~n~~~~p~~ 375 (448)
T KOG0689|consen 304 YKQHIKVNDLGLEENNDNSASRFEIWFRGRK-KREAYVLQAGSKEIKYAWTRAISSLLWQQKALLNKLVRPAR 375 (448)
T ss_pred eecchhhhheeeeccCCCCCcchhhhhhccc-ccceeEEeeCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 8999999999999999999999999998864 35789999999999999999999999999 777776 555
No 6
>KOG4240|consensus
Probab=99.19 E-value=1.1e-11 Score=127.41 Aligned_cols=97 Identities=26% Similarity=0.178 Sum_probs=76.6
Q ss_pred EecceEEEecCCCCCCCCccccccchHHHHHHHHHHHHHHHhhhccCCC-CCCCCCCChhhhccCCCCCC---CC----C
Q psy12865 129 VIQETYFSSALPLAAPPKSPASASSLEAKQLWVKRLREVIQETYFSSAL-PLAAPPKSPAKLKSRSNQPN---ME----D 200 (227)
Q Consensus 129 ~~gqtve~le~~~~~p~k~vlKass~e~Kq~WVk~iREViQE~~l~~a~-~~~~~pksp~~~~~~~~~~~---~~----~ 200 (227)
.+|+++++=-.....|+++++||++.++|+.|||+||+|+|+|.+.++. +++..|++..+.+++..+++ .. -
T Consensus 889 v~Gd~~kf~~~~g~~~~~~~~~a~~~~~K~~W~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 968 (1025)
T KOG4240|consen 889 VEGDPCKFELWVGRTESVIDLKASNHETKQKWVKEIREVLQERTILLKGKEQAQALETLDKARSKLPRSGAEDLGSQGNF 968 (1025)
T ss_pred cccCceEEEEeccCCCcceeeecCCcchhhhhccchHHHHHHHHHHhhhhhhhhccccccccccCCCCCchhcccccccc
Confidence 4677777777777788899999999999999999999999999754433 66777888766555433332 22 3
Q ss_pred CCCCCceeeeecCcCCccCCCCCCC
Q psy12865 201 EDNCDRGSLASYGSGNTTDSDKPLT 225 (227)
Q Consensus 201 ~~~~d~~SlaSr~S~nt~DSdklsg 225 (227)
.++++|.|+++|+|+|++||++.++
T Consensus 969 ~sq~~~~~~~~r~~~~~~~s~~~~~ 993 (1025)
T KOG4240|consen 969 SSQPETISIASRTSVNSCDSEKSSE 993 (1025)
T ss_pred ccCCchhcccccccccccccccCCC
Confidence 5689999999999999999998765
No 7
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=96.80 E-value=0.0023 Score=49.38 Aligned_cols=52 Identities=23% Similarity=0.256 Sum_probs=39.3
Q ss_pred Cccccccccceeec-cCCceeEEEecCCCCCCCceEEEEcCCHHHHHHHHHHHHHHHH
Q psy12865 3 GRLMTSELGVTEHI-EGDECKFAVWTGRAPISDCRILLKASSLEAKQLWVKRLREVIQ 59 (227)
Q Consensus 3 ~slk~s~lGltE~V-egD~~kFeiW~~r~~~s~~~~iLQAss~evK~~Wvk~IreiL~ 59 (227)
+.|.+..+-|.+.. ...+..|.|-... .+|+|+|.|++.|..|+..|..++.
T Consensus 48 ~~i~l~~~~v~~~~~~~~~~~F~I~~~~-----rsf~l~A~s~eEk~~W~~ai~~~i~ 100 (101)
T cd01219 48 ARIDVSGMQVCEGDNLERPHSFLVSGKQ-----RCLELQARTQKEKNDWVQAIFSIID 100 (101)
T ss_pred EEEecccEEEEeCCCCCcCceEEEecCC-----cEEEEEcCCHHHHHHHHHHHHHHhh
Confidence 44556666666542 2357889995433 3699999999999999999999875
No 8
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=96.63 E-value=0.0039 Score=48.62 Aligned_cols=50 Identities=24% Similarity=0.361 Sum_probs=36.9
Q ss_pred cccccccceeecc--CCceeEEEecCCCCCCCceEEEEcCCHHHHHHHHHHHHHHHH
Q psy12865 5 LMTSELGVTEHIE--GDECKFAVWTGRAPISDCRILLKASSLEAKQLWVKRLREVIQ 59 (227)
Q Consensus 5 lk~s~lGltE~Ve--gD~~kFeiW~~r~~~s~~~~iLQAss~evK~~Wvk~IreiL~ 59 (227)
|.+..+-|.+.-. +-+..|.|-.... .|+|+|+|++.|+.|+++|.+.++
T Consensus 47 i~L~~~~V~~~~~~~~~~~~F~I~~~~k-----s~~l~A~s~~Ek~~Wi~~i~~aI~ 98 (99)
T cd01220 47 LPLRGMLTEESEHEWGVPHCFTIFGGQC-----AITVAASTRAEKEKWLADLSKAIA 98 (99)
T ss_pred EEcCceEEeeccCCcCCceeEEEEcCCe-----EEEEECCCHHHHHHHHHHHHHHhh
Confidence 4455665544322 2368899985442 499999999999999999999875
No 9
>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain. Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.51 E-value=0.0044 Score=49.79 Aligned_cols=55 Identities=15% Similarity=0.356 Sum_probs=41.7
Q ss_pred CCCccccccccceeeccCC--ceeEEEecCCCCCCCceEEEEcCCHHHHHHHHHHHHHHHH
Q psy12865 1 MKGRLMTSELGVTEHIEGD--ECKFAVWTGRAPISDCRILLKASSLEAKQLWVKRLREVIQ 59 (227)
Q Consensus 1 yK~slk~s~lGltE~VegD--~~kFeiW~~r~~~s~~~~iLQAss~evK~~Wvk~IreiL~ 59 (227)
||..|.|..+.|...-.++ ...|.|-.+..+ .|+|+|.|+|.|+.|+..|-.++.
T Consensus 54 ~k~~~~l~~~~V~d~~d~~~~knaF~I~~~~~~----s~~l~Akt~eeK~~Wm~~l~~~~~ 110 (112)
T cd01261 54 LKEKFFMRKVDINDKPDSSEYKNAFEIILKDGN----SVIFSAKNAEEKNNWMAALISVQT 110 (112)
T ss_pred EEEEEeeeeeEEEEcCCCcccCceEEEEcCCCC----EEEEEECCHHHHHHHHHHHHHHhc
Confidence 3455667777777655555 678999865422 499999999999999999987754
No 10
>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain. Trio pleckstrin homology (PH) domain. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.46 E-value=0.0027 Score=51.08 Aligned_cols=26 Identities=46% Similarity=0.696 Sum_probs=23.8
Q ss_pred CCccccccchHHHHHHHHHHHHHHHh
Q psy12865 145 PKSPASASSLEAKQLWVKRLREVIQE 170 (227)
Q Consensus 145 ~k~vlKass~e~Kq~WVk~iREViQE 170 (227)
.+.+|+|+|.|.|+.|+++||+++||
T Consensus 89 ~~~ilqA~s~e~K~~W~~~I~~il~~ 114 (114)
T cd01232 89 NRIILKANSQETKQEWVKKIREILQE 114 (114)
T ss_pred eEEEEECCCHHHHHHHHHHHHHHhhC
Confidence 46788999999999999999999985
No 11
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=96.14 E-value=0.019 Score=39.96 Aligned_cols=51 Identities=29% Similarity=0.365 Sum_probs=40.5
Q ss_pred ccccccccceeeccC----CceeEEEecCCCCCCCceEEEEcCCHHHHHHHHHHHHHHH
Q psy12865 4 RLMTSELGVTEHIEG----DECKFAVWTGRAPISDCRILLKASSLEAKQLWVKRLREVI 58 (227)
Q Consensus 4 slk~s~lGltE~Veg----D~~kFeiW~~r~~~s~~~~iLQAss~evK~~Wvk~IreiL 58 (227)
.|.+.++.+....++ .+..|.|..+.. ..|+++|.|.+.++.|+..|+.++
T Consensus 47 ~i~l~~~~v~~~~~~~~~~~~~~f~l~~~~~----~~~~f~~~s~~~~~~W~~~i~~~~ 101 (102)
T smart00233 47 SIDLSGITVREAPDPDSAKKPHCFEIKTADR----RSYLLQAESEEEREEWVDALRKAI 101 (102)
T ss_pred EEECCcCEEEeCCCCccCCCceEEEEEecCC----ceEEEEcCCHHHHHHHHHHHHHhh
Confidence 455666666666664 588999997664 369999999999999999999875
No 12
>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt
Probab=95.96 E-value=0.014 Score=44.47 Aligned_cols=47 Identities=19% Similarity=0.367 Sum_probs=33.8
Q ss_pred cccccccceeeccCCceeEEEecCCCCCCCceEEEEcCCHHHHHHHHHHHHH
Q psy12865 5 LMTSELGVTEHIEGDECKFAVWTGRAPISDCRILLKASSLEAKQLWVKRLRE 56 (227)
Q Consensus 5 lk~s~lGltE~VegD~~kFeiW~~r~~~s~~~~iLQAss~evK~~Wvk~Ire 56 (227)
|.|+...+..+ +.|+++|+|-.... .+|-|+|.|++.++.|++.|.+
T Consensus 44 I~L~~~~i~~~-~~~~~~F~i~~~~~----r~~~L~A~s~~e~~~Wi~al~~ 90 (91)
T cd01247 44 IFLKKAIIAAH-EFDENRFDISVNEN----VVWYLRAENSQSRLLWMDSVVR 90 (91)
T ss_pred EECcccEEEcC-CCCCCEEEEEeCCC----eEEEEEeCCHHHHHHHHHHHhh
Confidence 34444334433 56789999974331 3699999999999999998864
No 13
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=95.80 E-value=0.021 Score=40.86 Aligned_cols=50 Identities=18% Similarity=0.280 Sum_probs=38.6
Q ss_pred cccccccceeecc-------CCceeEEEecCCCCCCCceEEEEcCCHHHHHHHHHHHHHHH
Q psy12865 5 LMTSELGVTEHIE-------GDECKFAVWTGRAPISDCRILLKASSLEAKQLWVKRLREVI 58 (227)
Q Consensus 5 lk~s~lGltE~Ve-------gD~~kFeiW~~r~~~s~~~~iLQAss~evK~~Wvk~IreiL 58 (227)
|.+..+.+.+... ..+..|+|-+... .+|.|+|.|.+.++.|+..|+.++
T Consensus 47 i~l~~~~v~~~~~~~~~~~~~~~~~f~i~~~~~----~~~~~~~~s~~~~~~W~~~i~~~~ 103 (104)
T PF00169_consen 47 IPLDDCTVRPDPSSDFLSNKKRKNCFEITTPNG----KSYLFSAESEEERKRWIQAIQKAI 103 (104)
T ss_dssp EEGTTEEEEEETSSTSTSTSSSSSEEEEEETTS----EEEEEEESSHHHHHHHHHHHHHHH
T ss_pred EEecCceEEEcCccccccccCCCcEEEEEeCCC----cEEEEEcCCHHHHHHHHHHHHHHh
Confidence 4455555555444 4678899997664 469999999999999999999875
No 14
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=95.60 E-value=0.028 Score=42.87 Aligned_cols=47 Identities=23% Similarity=0.277 Sum_probs=34.2
Q ss_pred ccccccceeeccCCceeEEEecCCCCCCCceEEEEcCCHHHHHHHHHHHHHH
Q psy12865 6 MTSELGVTEHIEGDECKFAVWTGRAPISDCRILLKASSLEAKQLWVKRLREV 57 (227)
Q Consensus 6 k~s~lGltE~VegD~~kFeiW~~r~~~s~~~~iLQAss~evK~~Wvk~Irei 57 (227)
.+....++......++.|+|-+.. ..|.|+|.|++.++.||+.|...
T Consensus 47 ~L~~~~~~~~~~~~~~~F~i~t~~-----r~y~l~A~s~~e~~~Wi~al~~~ 93 (95)
T cd01265 47 DLSGAAFTYDPREEKGRFEIHSNN-----EVIALKASSDKQMNYWLQALQSK 93 (95)
T ss_pred ECCccEEEcCCCCCCCEEEEEcCC-----cEEEEECCCHHHHHHHHHHHHhh
Confidence 344444444444448899997644 25999999999999999998764
No 15
>cd01227 PH_Dbs Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs is a guanine nucleotide exchange factor (GEF), which contains spectrin repeats, a rhoGEF (DH) domain and a PH domain. The Dbs PH domain participates in binding to both the Cdc42 and RhoA GTPases. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=95.32 E-value=0.014 Score=48.32 Aligned_cols=35 Identities=23% Similarity=0.302 Sum_probs=29.7
Q ss_pred CCCCccccccchHHHHHHHHHHHHHHHhhh--ccCCC
Q psy12865 143 APPKSPASASSLEAKQLWVKRLREVIQETY--FSSAL 177 (227)
Q Consensus 143 ~p~k~vlKass~e~Kq~WVk~iREViQE~~--l~~a~ 177 (227)
++.+.+|+|++.|.|+.|++.||+|++++. ++|..
T Consensus 90 ~~~~yilqA~t~e~K~~Wv~~I~~iL~~Q~~~lk~~~ 126 (133)
T cd01227 90 REEVYILQAPTPEIKAAWVNEIRKVLTSQLQACKEAS 126 (133)
T ss_pred CCcEEEEEcCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 456788999999999999999999998773 66643
No 16
>cd01223 PH_Vav Vav pleckstrin homology (PH) domain. Vav pleckstrin homology (PH) domain. Vav acts as a guanosine nucleotide exchange factor(GEF) for Rho/Rac proteins. Mammalian Vav proteins consist of a calponin homology (CH) domain, an acidic region, a rho-GEF (DH)domain, a PH domain, a Zinc finger region and an SH2 domain, flanked by two SH3 domains. In invertebrates such as Drosophila and C.elegans, Vav is missing the N-terminal SH3 domain . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=95.27 E-value=0.041 Score=44.84 Aligned_cols=55 Identities=13% Similarity=0.167 Sum_probs=41.9
Q ss_pred CCCccccccccceeeccCCce------e--EEEecCCCCCCCceEEEEcCCHHHHHHHHHHHHHHH
Q psy12865 1 MKGRLMTSELGVTEHIEGDEC------K--FAVWTGRAPISDCRILLKASSLEAKQLWVKRLREVI 58 (227)
Q Consensus 1 yK~slk~s~lGltE~VegD~~------k--FeiW~~r~~~s~~~~iLQAss~evK~~Wvk~IreiL 58 (227)
||+.+.|.+++|+++...|+- + |.|-..+. ...|+|.|-|+|.|..|+..|-.-+
T Consensus 49 ~Ke~~~l~~~~I~~~~~~d~~~~~~~~~~~f~L~~~~~---~~~~~f~~Ktee~K~kWm~al~~a~ 111 (116)
T cd01223 49 YKDIHDLADYKIENNPSRDTEGRDTRWKYGFYLAHKQG---KTGFTFYFKTEHLRKKWLKALEMAM 111 (116)
T ss_pred hHHhhhhheeeeEecCccCcccCCcceEEEEEEEecCC---CccEEEEeCCHHHHHHHHHHHHHHH
Confidence 789999999999998765553 3 34444432 2349999999999999999886554
No 17
>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain. Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=95.22 E-value=0.048 Score=43.17 Aligned_cols=37 Identities=11% Similarity=0.241 Sum_probs=30.6
Q ss_pred ceeEEEecCCCCCCCceEEEEcCCHHHHHHHHHHHHHHHHhh
Q psy12865 20 ECKFAVWTGRAPISDCRILLKASSLEAKQLWVKRLREVIQET 61 (227)
Q Consensus 20 ~~kFeiW~~r~~~s~~~~iLQAss~evK~~Wvk~IreiL~~q 61 (227)
+..|-|-.... .|+++|+|++.|..|+.+|.+.+..-
T Consensus 65 ~n~f~I~~~~k-----Sf~v~A~s~~eK~eWl~~i~~ai~~~ 101 (104)
T cd01218 65 RNGWIIKTPTK-----SFAVYAATETEKREWMLHINKCVTDL 101 (104)
T ss_pred cceEEEecCCe-----EEEEEcCCHHHHHHHHHHHHHHHHHH
Confidence 46788876542 49999999999999999999987643
No 18
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=95.13 E-value=0.046 Score=41.92 Aligned_cols=35 Identities=26% Similarity=0.246 Sum_probs=28.9
Q ss_pred CceeEEEecCCCCCCCceEEEEcCCHHHHHHHHHHHHHHH
Q psy12865 19 DECKFAVWTGRAPISDCRILLKASSLEAKQLWVKRLREVI 58 (227)
Q Consensus 19 D~~kFeiW~~r~~~s~~~~iLQAss~evK~~Wvk~IreiL 58 (227)
.+.+|+|=.. ..+|.|||.|.+..+.|+..|+...
T Consensus 64 ~~~~F~I~t~-----~rt~~~~A~s~~e~~~Wi~ai~~~~ 98 (100)
T cd01233 64 GPNTFAVCTK-----HRGYLFQALSDKEMIDWLYALNPLY 98 (100)
T ss_pred CCcEEEEECC-----CCEEEEEcCCHHHHHHHHHHhhhhh
Confidence 4789999433 3469999999999999999998754
No 19
>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=94.97 E-value=0.018 Score=45.09 Aligned_cols=28 Identities=21% Similarity=0.516 Sum_probs=24.4
Q ss_pred CCC-CccccccchHHHHHHHHHHHHHHHh
Q psy12865 143 APP-KSPASASSLEAKQLWVKRLREVIQE 170 (227)
Q Consensus 143 ~p~-k~vlKass~e~Kq~WVk~iREViQE 170 (227)
.|. ..+|+|+|.|.|+.|+++|+++|-|
T Consensus 69 ~p~~~~~l~A~s~e~K~~W~~~i~~~i~~ 97 (97)
T cd01222 69 DPKGALQLTARNREEKRIWTQQLKRAMLQ 97 (97)
T ss_pred CCceEEEEEecCHHHHHHHHHHHHHHhhC
Confidence 554 6889999999999999999999854
No 20
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=94.95 E-value=0.066 Score=36.90 Aligned_cols=49 Identities=24% Similarity=0.330 Sum_probs=37.1
Q ss_pred ccccccccceeeccC--CceeEEEecCCCCCCCceEEEEcCCHHHHHHHHHHHHH
Q psy12865 4 RLMTSELGVTEHIEG--DECKFAVWTGRAPISDCRILLKASSLEAKQLWVKRLRE 56 (227)
Q Consensus 4 slk~s~lGltE~Veg--D~~kFeiW~~r~~~s~~~~iLQAss~evK~~Wvk~Ire 56 (227)
.+.+.+..+....++ .+..|.|..... ..|.|+|.|.+.++.|+..|+.
T Consensus 45 ~i~l~~~~v~~~~~~~~~~~~f~i~~~~~----~~~~~~~~s~~~~~~W~~~l~~ 95 (96)
T cd00821 45 SIPLSGAEVEESPDDSGRKNCFEIRTPDG----RSYLLQAESEEEREEWIEALQS 95 (96)
T ss_pred eEEcCCCEEEECCCcCCCCcEEEEecCCC----cEEEEEeCCHHHHHHHHHHHhc
Confidence 344555555555554 488999997653 3599999999999999999975
No 21
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=94.57 E-value=0.073 Score=41.43 Aligned_cols=34 Identities=24% Similarity=0.394 Sum_probs=27.6
Q ss_pred CceeEEEecCCCCCCCceEEEEcCCHHHHHHHHHHHHHH
Q psy12865 19 DECKFAVWTGRAPISDCRILLKASSLEAKQLWVKRLREV 57 (227)
Q Consensus 19 D~~kFeiW~~r~~~s~~~~iLQAss~evK~~Wvk~Irei 57 (227)
+.+.|.|=+.. .+|.|+|.|.+..+.||+.|++|
T Consensus 73 ~~~~F~i~t~~-----r~~yl~A~s~~er~~WI~ai~~~ 106 (106)
T cd01238 73 FKYPFQVVHDE-----GTLYVFAPTEELRKRWIKALKQV 106 (106)
T ss_pred cCccEEEEeCC-----CeEEEEcCCHHHHHHHHHHHHhC
Confidence 45778887643 25889999999999999999874
No 22
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=94.48 E-value=0.092 Score=37.87 Aligned_cols=36 Identities=33% Similarity=0.477 Sum_probs=29.6
Q ss_pred cCCceeEEEecCCCCCCCceEEEEcCCHHHHHHHHHHHHH
Q psy12865 17 EGDECKFAVWTGRAPISDCRILLKASSLEAKQLWVKRLRE 56 (227)
Q Consensus 17 egD~~kFeiW~~r~~~s~~~~iLQAss~evK~~Wvk~Ire 56 (227)
..++..|.|..... ..|.|+|.|.+.++.|+..|+.
T Consensus 55 ~~~~~~F~i~~~~~----~~~~~~a~s~~e~~~Wi~al~~ 90 (91)
T cd01246 55 DSDDKCFTIDTGGD----KTLHLRANSEEERQRWVDALEL 90 (91)
T ss_pred CCCCcEEEEEcCCC----CEEEEECCCHHHHHHHHHHHHh
Confidence 45578999996442 3599999999999999999874
No 23
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=94.16 E-value=0.1 Score=40.78 Aligned_cols=50 Identities=10% Similarity=0.122 Sum_probs=38.8
Q ss_pred CccccccccceeeccCCce----eEEEecCCCCCCCceEEEEcCCHHHHHHHHHHHHHH
Q psy12865 3 GRLMTSELGVTEHIEGDEC----KFAVWTGRAPISDCRILLKASSLEAKQLWVKRLREV 57 (227)
Q Consensus 3 ~slk~s~lGltE~VegD~~----kFeiW~~r~~~s~~~~iLQAss~evK~~Wvk~Irei 57 (227)
.+|.++.+-..|.|+.+++ .|.|=... .+|.|||.|.+..+.|+..|+++
T Consensus 45 g~I~L~~i~~ve~v~~~~~~~~~~fqivt~~-----r~~yi~a~s~~E~~~Wi~al~k~ 98 (98)
T cd01244 45 ALIKLAAIKGTEPLSDKSFVNVDIITIVCED-----DTMQLQFEAPVEATDWLNALEKQ 98 (98)
T ss_pred eeEEccceEEEEEcCCcccCCCceEEEEeCC-----CeEEEECCCHHHHHHHHHHHhcC
Confidence 4566778888888876655 57775432 36999999999999999999864
No 24
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=93.58 E-value=0.18 Score=39.07 Aligned_cols=34 Identities=12% Similarity=0.363 Sum_probs=29.0
Q ss_pred eEEEecCCCCCCCceEEEEcCCHHHHHHHHHHHHHHHHh
Q psy12865 22 KFAVWTGRAPISDCRILLKASSLEAKQLWVKRLREVIQE 60 (227)
Q Consensus 22 kFeiW~~r~~~s~~~~iLQAss~evK~~Wvk~IreiL~~ 60 (227)
.|+|=+.. .+|.|+|.|.+.++.|+..|+.+|..
T Consensus 69 ~F~i~t~~-----Rty~l~a~s~~e~~~Wi~ai~~v~~~ 102 (103)
T cd01251 69 GVTLVTPE-----RKFLFACETEQDRREWIAAFQNVLSR 102 (103)
T ss_pred eEEEEeCC-----eEEEEECCCHHHHHHHHHHHHHHhcC
Confidence 78887543 36999999999999999999999753
No 25
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=93.25 E-value=0.2 Score=39.59 Aligned_cols=33 Identities=21% Similarity=0.385 Sum_probs=27.5
Q ss_pred ceeEEEecCCCCCCCceEEEEcCCHHHHHHHHHHHHHH
Q psy12865 20 ECKFAVWTGRAPISDCRILLKASSLEAKQLWVKRLREV 57 (227)
Q Consensus 20 ~~kFeiW~~r~~~s~~~~iLQAss~evK~~Wvk~Irei 57 (227)
+..|+|=+..+ +|.|||.|.+.+++|++.|...
T Consensus 68 ~~~Fei~tp~r-----t~~l~A~se~e~e~WI~~i~~a 100 (101)
T cd01264 68 PKAFEIFTADK-----TYILKAKDEKNAEEWLQCLNIA 100 (101)
T ss_pred CcEEEEEcCCc-----eEEEEeCCHHHHHHHHHHHHhh
Confidence 46899976553 5999999999999999998753
No 26
>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....
Probab=93.23 E-value=0.045 Score=36.53 Aligned_cols=27 Identities=4% Similarity=-0.408 Sum_probs=23.1
Q ss_pred chhccccc--ceEEEEecceEEEecCCCC
Q psy12865 116 LEAKQLWV--KRLREVIQETYFSSALPLA 142 (227)
Q Consensus 116 v~~d~~a~--~elsv~~gqtve~le~~~~ 142 (227)
|+.||.+. +||++.+|+.++|++...+
T Consensus 2 Alydf~~~~~~eLs~~~Gd~i~v~~~~~~ 30 (48)
T PF00018_consen 2 ALYDFDAEDPDELSFKKGDIIEVLEKSDD 30 (48)
T ss_dssp ESSCBETSSTTBSEB-TTEEEEEEEESSS
T ss_pred CCeeeCCCCCCEEeEECCCEEEEEEecCC
Confidence 68899998 9999999999999997554
No 27
>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A ....
Probab=92.62 E-value=0.074 Score=36.18 Aligned_cols=25 Identities=4% Similarity=-0.320 Sum_probs=20.5
Q ss_pred chhccccc--ceEEEEecceEEEecCC
Q psy12865 116 LEAKQLWV--KRLREVIQETYFSSALP 140 (227)
Q Consensus 116 v~~d~~a~--~elsv~~gqtve~le~~ 140 (227)
|+.||.+. +||++++||.|.|++..
T Consensus 1 Al~~y~~~~~dELs~~~Gd~i~v~~~~ 27 (49)
T PF14604_consen 1 ALYDYEAQDPDELSFKKGDVITVLEKS 27 (49)
T ss_dssp ESSCBCSSSTTB-EB-TTEEEEEEEES
T ss_pred CCccCCCCCcCEeeEcCCCEEEEEEeC
Confidence 57899998 99999999999999763
No 28
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=92.46 E-value=0.34 Score=38.33 Aligned_cols=29 Identities=21% Similarity=0.366 Sum_probs=25.0
Q ss_pred ceEEEEcCCHHHHHHHHHHHHHHHHhhcc
Q psy12865 35 CRILLKASSLEAKQLWVKRLREVIQETYF 63 (227)
Q Consensus 35 ~~~iLQAss~evK~~Wvk~IreiL~~q~l 63 (227)
..|.|+|.|.+..+.|+..|+.++...-.
T Consensus 90 ~~~~~~A~s~~e~~~Wi~al~~~~~~~~~ 118 (125)
T cd01252 90 SVYRISAANDEEMDEWIKSIKASISPNPF 118 (125)
T ss_pred eEEEEECCCHHHHHHHHHHHHHHHhcCch
Confidence 46889999999999999999999875533
No 29
>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain. Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str
Probab=92.20 E-value=0.33 Score=37.62 Aligned_cols=30 Identities=27% Similarity=0.333 Sum_probs=24.7
Q ss_pred EEEecCCCCCCCceEEEEcCCHHHHHHHHHHHHHH
Q psy12865 23 FAVWTGRAPISDCRILLKASSLEAKQLWVKRLREV 57 (227)
Q Consensus 23 FeiW~~r~~~s~~~~iLQAss~evK~~Wvk~Irei 57 (227)
|.|=.. ..+|.|.|.|.+..+.||+.|++|
T Consensus 78 f~i~t~-----~r~y~l~A~s~ee~~~Wi~~I~~~ 107 (108)
T cd01266 78 FDIETI-----VRDLYLVAKNEEEMTLWVNCICKL 107 (108)
T ss_pred EEEEeC-----CccEEEEECCHHHHHHHHHHHHhh
Confidence 666532 235999999999999999999987
No 30
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=92.12 E-value=0.41 Score=33.16 Aligned_cols=36 Identities=31% Similarity=0.399 Sum_probs=29.8
Q ss_pred CceeEEEecCCCCCCCceEEEEcCCHHHHHHHHHHHHH
Q psy12865 19 DECKFAVWTGRAPISDCRILLKASSLEAKQLWVKRLRE 56 (227)
Q Consensus 19 D~~kFeiW~~r~~~s~~~~iLQAss~evK~~Wvk~Ire 56 (227)
.+..|+|..+.. ....|+|+|.|.+..+.|+..|++
T Consensus 63 ~~~~F~i~~~~~--~~~~~~~~~~~~~~~~~W~~al~~ 98 (99)
T cd00900 63 DPNCFAIVTKDR--GRRVFVFQADSEEEAQEWVEALQQ 98 (99)
T ss_pred CCceEEEECCCC--CcEEEEEEcCCHHHHHHHHHHHhc
Confidence 568999997652 234699999999999999999875
No 31
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=91.95 E-value=0.39 Score=35.75 Aligned_cols=34 Identities=18% Similarity=0.335 Sum_probs=26.8
Q ss_pred ceeEEEecCCCCCCCceEEEEcCCHHHHHHHHHHHHHHH
Q psy12865 20 ECKFAVWTGRAPISDCRILLKASSLEAKQLWVKRLREVI 58 (227)
Q Consensus 20 ~~kFeiW~~r~~~s~~~~iLQAss~evK~~Wvk~IreiL 58 (227)
.+.|+|=... ..|.|+|.|.+..+.|+..|+.++
T Consensus 68 ~~~f~i~t~~-----r~~~~~a~s~~e~~~Wi~ai~~~i 101 (101)
T cd01235 68 KGFFDLKTSK-----RTYNFLAENINEAQRWKEKIQQCI 101 (101)
T ss_pred ceEEEEEeCC-----ceEEEECCCHHHHHHHHHHHHhhC
Confidence 3457774432 359999999999999999999864
No 32
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain. Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=91.57 E-value=0.44 Score=34.47 Aligned_cols=33 Identities=21% Similarity=0.323 Sum_probs=27.3
Q ss_pred CceeEEEecCCCCCCCceEEEEcCCHHHHHHHHHHHHH
Q psy12865 19 DECKFAVWTGRAPISDCRILLKASSLEAKQLWVKRLRE 56 (227)
Q Consensus 19 D~~kFeiW~~r~~~s~~~~iLQAss~evK~~Wvk~Ire 56 (227)
.+..|.|.... ..|+|+|.|.+..+.|+..|+.
T Consensus 61 ~~~~f~i~~~~-----~~~~f~a~s~~~~~~Wi~al~~ 93 (94)
T cd01250 61 RRFCFEVISPT-----KTWHFQADSEEERDDWISAIQE 93 (94)
T ss_pred CceEEEEEcCC-----cEEEEECCCHHHHHHHHHHHhc
Confidence 46789998543 3599999999999999999863
No 33
>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain. Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=90.74 E-value=0.53 Score=35.66 Aligned_cols=33 Identities=21% Similarity=0.397 Sum_probs=26.3
Q ss_pred CceeEEEecCCCCCCCceEEEEcCCHHHHHHHHHHHH
Q psy12865 19 DECKFAVWTGRAPISDCRILLKASSLEAKQLWVKRLR 55 (227)
Q Consensus 19 D~~kFeiW~~r~~~s~~~~iLQAss~evK~~Wvk~Ir 55 (227)
.+..|.|..... ..|.|||.|.+.-+.|+..|+
T Consensus 70 ~~~~F~l~~~~~----~~~~f~a~s~e~~~~Wi~aL~ 102 (104)
T cd01253 70 KKHVFRLRLPDG----AEFLFQAPDEEEMSSWVRALK 102 (104)
T ss_pred CceEEEEEecCC----CEEEEECCCHHHHHHHHHHHh
Confidence 456788875332 359999999999999999986
No 34
>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....
Probab=89.78 E-value=0.21 Score=34.15 Aligned_cols=23 Identities=4% Similarity=-0.291 Sum_probs=19.3
Q ss_pred cchhccccc--ceEEEEecceEEEe
Q psy12865 115 SLEAKQLWV--KRLREVIQETYFSS 137 (227)
Q Consensus 115 ~v~~d~~a~--~elsv~~gqtve~l 137 (227)
.|+.||.+. ++|++.+||.|+|+
T Consensus 3 ~a~~d~~~~~~~~Ls~~~Gd~i~v~ 27 (55)
T PF07653_consen 3 RAIFDYVAEDPDELSFKKGDVIEVL 27 (55)
T ss_dssp EESSSBESSSTTB-EB-TTEEEEEE
T ss_pred EEeEEECCCCCCceEEecCCEEEEE
Confidence 478999997 89999999999999
No 35
>PF15405 PH_5: Pleckstrin homology domain; PDB: 2Z0Q_A.
Probab=89.54 E-value=0.61 Score=38.34 Aligned_cols=44 Identities=18% Similarity=0.249 Sum_probs=27.5
Q ss_pred eeeccCCceeEEEecCCCCCCCceEEEEcCCHHHHHHHHHHHHH
Q psy12865 13 TEHIEGDECKFAVWTGRAPISDCRILLKASSLEAKQLWVKRLRE 56 (227)
Q Consensus 13 tE~VegD~~kFeiW~~r~~~s~~~~iLQAss~evK~~Wvk~Ire 56 (227)
....+.+.-.|.|-+..-......|+|.|+|...++.|+..|.+
T Consensus 90 ~~~~~~~~~~yp~~~~hlG~~~~~~TLyA~s~~~R~~W~e~I~~ 133 (135)
T PF15405_consen 90 NPNSSDSKSLYPFTFRHLGRKGYSYTLYASSAQARQKWLEKIEE 133 (135)
T ss_dssp ------TSSEEEEEE---GGG-EEEEEE-SSHHHHHHHHHHHHH
T ss_pred eeeeccCCCccCEEEEEcCCCceEEEEEeCCHHHHHHHHHHHHh
Confidence 34456678888888644333334589999999999999999976
No 36
>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=89.05 E-value=0.76 Score=36.05 Aligned_cols=35 Identities=23% Similarity=0.361 Sum_probs=28.2
Q ss_pred CCceeEEEecCCCCCCCceEEEEcCCHHHHHHHHHHHHH
Q psy12865 18 GDECKFAVWTGRAPISDCRILLKASSLEAKQLWVKRLRE 56 (227)
Q Consensus 18 gD~~kFeiW~~r~~~s~~~~iLQAss~evK~~Wvk~Ire 56 (227)
+-|.+|+|-+...+ .+|-+-|++ +.++.|++.|+.
T Consensus 63 ~r~~cFel~~~~~~---~~y~~~a~~-~er~~Wi~~l~~ 97 (98)
T cd01245 63 GRPNCFQIVERALP---TVYYSCRSS-EERDKWIESLQA 97 (98)
T ss_pred CCCeEEEEecCCCC---eEEEEeCCH-HHHHHHHHHHhc
Confidence 55789999765432 369999999 999999999974
No 37
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=88.08 E-value=1.3 Score=32.97 Aligned_cols=34 Identities=21% Similarity=0.303 Sum_probs=27.1
Q ss_pred CceeEEEecCCCCCCCceEEEEcCCHHHHHHHHHHHHH
Q psy12865 19 DECKFAVWTGRAPISDCRILLKASSLEAKQLWVKRLRE 56 (227)
Q Consensus 19 D~~kFeiW~~r~~~s~~~~iLQAss~evK~~Wvk~Ire 56 (227)
.+..|.|..... ..|.|+|.|.+..+.|+..|+.
T Consensus 62 k~~~F~I~~~~~----~~~~f~a~s~~e~~~Wi~ai~~ 95 (96)
T cd01260 62 KKYAFKVCHPVY----KSFYFAAETLDDLSQWVNHLIT 95 (96)
T ss_pred CceEEEECCCCC----cEEEEEeCCHHHHHHHHHHHHh
Confidence 456788874431 3599999999999999999974
No 38
>smart00326 SH3 Src homology 3 domains. Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.
Probab=86.86 E-value=0.33 Score=31.44 Aligned_cols=26 Identities=4% Similarity=-0.299 Sum_probs=23.6
Q ss_pred cchhccccc--ceEEEEecceEEEecCC
Q psy12865 115 SLEAKQLWV--KRLREVIQETYFSSALP 140 (227)
Q Consensus 115 ~v~~d~~a~--~elsv~~gqtve~le~~ 140 (227)
.++.||.+. +||++++|+.|+|++..
T Consensus 6 ~a~~~~~~~~~~~l~~~~Gd~v~v~~~~ 33 (58)
T smart00326 6 RALYDYTAQDPDELSFKKGDIITVLEKS 33 (58)
T ss_pred EEeeeeCCCCCCCCCCCCCCEEEEEEcC
Confidence 478899998 89999999999999985
No 39
>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain. Collybistin pleckstrin homology (PH) domain. Collybistin is GEF which induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin. It consists of an SH3 domain, followed by a RhoGEF(dbH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=86.57 E-value=1.4 Score=35.56 Aligned_cols=53 Identities=21% Similarity=0.340 Sum_probs=38.8
Q ss_pred CCCccccccccceeeccCC--------ceeEEEecCCCCCCCceEEEEcCCHHHHHHHHHHHHH
Q psy12865 1 MKGRLMTSELGVTEHIEGD--------ECKFAVWTGRAPISDCRILLKASSLEAKQLWVKRLRE 56 (227)
Q Consensus 1 yK~slk~s~lGltE~VegD--------~~kFeiW~~r~~~s~~~~iLQAss~evK~~Wvk~Ire 56 (227)
||..|.|..+-|+..-.|+ ...|.|-.... ..-|++.|.|+|.|+.|+..+.+
T Consensus 45 yKgri~l~~~~I~d~~Dg~~~~~~~~~knafkl~~~~~---~~~~~f~~Kt~e~K~~Wm~a~~~ 105 (109)
T cd01224 45 YKGRIDLDRCEVVNIRDGKMFSSGHTIKNSLKIYSEST---DEWYLFSFKSAERKHRWLSAFAL 105 (109)
T ss_pred EEEEEEcccEEEEECCCCccccCCceeEEEEEEEEcCC---CeEEEEEECCHHHHHHHHHHHHH
Confidence 6777888888887765553 23466665442 23599999999999999998763
No 40
>cd00174 SH3 Src homology 3 domains; SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies.
Probab=86.31 E-value=0.35 Score=31.07 Aligned_cols=25 Identities=4% Similarity=-0.374 Sum_probs=22.6
Q ss_pred chhccccc--ceEEEEecceEEEecCC
Q psy12865 116 LEAKQLWV--KRLREVIQETYFSSALP 140 (227)
Q Consensus 116 v~~d~~a~--~elsv~~gqtve~le~~ 140 (227)
++.||.+. ++|++.+|+.|.|++..
T Consensus 4 a~~~~~~~~~~~l~~~~Gd~v~v~~~~ 30 (54)
T cd00174 4 ALYDYDARDPDELSFKKGDIIEVLEKS 30 (54)
T ss_pred EEEeeCCCCCCCCCCCCCCEEEEEEcC
Confidence 67899998 89999999999999984
No 41
>PF15409 PH_8: Pleckstrin homology domain
Probab=85.99 E-value=1.6 Score=34.00 Aligned_cols=38 Identities=26% Similarity=0.282 Sum_probs=30.9
Q ss_pred eccCCceeEEEecCCCCCCCceEEEEcCCHHHHHHHHHHHHHH
Q psy12865 15 HIEGDECKFAVWTGRAPISDCRILLKASSLEAKQLWVKRLREV 57 (227)
Q Consensus 15 ~VegD~~kFeiW~~r~~~s~~~~iLQAss~evK~~Wvk~Irei 57 (227)
++..+.|+|.|=+|- +.|.|+|.|.+.-+.||..|+++
T Consensus 51 s~~~~~~~I~idsg~-----~i~hLKa~s~~~f~~Wv~aL~~a 88 (89)
T PF15409_consen 51 SANKKSRRIDIDSGD-----EIWHLKAKSQEDFQRWVSALQKA 88 (89)
T ss_pred EecCCCCEEEEEcCC-----eEEEEEcCCHHHHHHHHHHHHhc
Confidence 345578999996553 46999999999999999998763
No 42
>KOG3518|consensus
Probab=84.31 E-value=0.9 Score=43.86 Aligned_cols=60 Identities=25% Similarity=0.418 Sum_probs=48.3
Q ss_pred CCCccccccccceeec-cCCceeEEEecCCCCCCCceEEEEcCCHHHHHHHHHHHHHHHHhhc
Q psy12865 1 MKGRLMTSELGVTEHI-EGDECKFAVWTGRAPISDCRILLKASSLEAKQLWVKRLREVIQETY 62 (227)
Q Consensus 1 yK~slk~s~lGltE~V-egD~~kFeiW~~r~~~s~~~~iLQAss~evK~~Wvk~IreiL~~q~ 62 (227)
||-.|+-+.+=+.|-+ -..|..|.+.+=.-|. --|+++|.|.+.|..|+.++.+++.+-+
T Consensus 376 ~k~~ilc~nlmlne~icpeeplsfqv~~fdnpk--aq~~fma~sme~kr~wm~elkrlildh~ 436 (521)
T KOG3518|consen 376 CKAHILCGNLMLNEVICPEEPLSFQVFHFDNPK--AQHTFMAKSMEDKRLWMLELKRLILDHH 436 (521)
T ss_pred eehhhhccchhhheeccCCCCceeEEEecCCcc--hhhhhhhhhhHHHHHHHHHHHHHHHhhh
Confidence 5667777788888887 7899999998333333 2499999999999999999999987763
No 43
>cd01255 PH_TIAM TIAM Pleckstrin homology (PH) domain. TIAM Pleckstrin homology (PH) domain. TIAM (T-cell invasion and metastasis) is a guanine nucleotide exchange factor specific for RAC1. It consists of an N-terminal PH domain followed by Raf-like ras binding domain(RDB), a PDZ domain, a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. This subfamily contains the alignment of the PH domain that follows the DH domain.
Probab=81.81 E-value=3.1 Score=35.62 Aligned_cols=61 Identities=13% Similarity=0.245 Sum_probs=42.7
Q ss_pred CCCccccccccceeeccC---CceeEEEecCCCC---CCCceEEEEcCCHHHHHHHHHHHHHHHHhh
Q psy12865 1 MKGRLMTSELGVTEHIEG---DECKFAVWTGRAP---ISDCRILLKASSLEAKQLWVKRLREVIQET 61 (227)
Q Consensus 1 yK~slk~s~lGltE~Veg---D~~kFeiW~~r~~---~s~~~~iLQAss~evK~~Wvk~IreiL~~q 61 (227)
|+..|-++++.+.+.--. ..|-|||-+-+.. ..+..|.|-.+++|.|+..+|-||.||-+-
T Consensus 91 fr~miP~~alQVR~~n~ad~e~~~vwEliH~kSe~egRpE~vfqLCcS~~E~k~~flK~Irsilre~ 157 (160)
T cd01255 91 FRVLIPVTALQVRASSAADMESNFLWELIHLKSELEGRPEKVFVLCCSTAESRNAFLKTIRSILRES 157 (160)
T ss_pred EEEeeceeeeeeecCCCcCcccceEEEEEeecccccCCCcceEEEecCCHHHHHHHHHHHHHHHHHH
Confidence 455666777777665433 3456676632211 144579999999999999999999999764
No 44
>cd01249 PH_oligophrenin Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin is composed of a PH domain, a rhoGAP domain and a proline rich region. Closely related proteins have a C-terminal SH3 domain. PH domains a share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=81.69 E-value=2.3 Score=34.04 Aligned_cols=30 Identities=27% Similarity=0.443 Sum_probs=24.0
Q ss_pred eEEEecCCCCCCCceEEEEcCCHHHHHHHHHHH
Q psy12865 22 KFAVWTGRAPISDCRILLKASSLEAKQLWVKRL 54 (227)
Q Consensus 22 kFeiW~~r~~~s~~~~iLQAss~evK~~Wvk~I 54 (227)
+|+|-+..++. .++|||-|....++|+..|
T Consensus 72 CFei~~~~~~~---~~~lQA~Se~~~~~Wi~A~ 101 (104)
T cd01249 72 CFDVEVEEKPG---VITMQALSEKDRRLWIEAM 101 (104)
T ss_pred eEeeeecCCCC---eEEEEecCHHHHHHHHHhh
Confidence 56787655543 5999999999999999865
No 45
>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=81.44 E-value=3.3 Score=33.33 Aligned_cols=35 Identities=29% Similarity=0.426 Sum_probs=26.4
Q ss_pred ceeEEEecCCCCCCCceEEEEcCCHHHHHHHHHHHHHHH
Q psy12865 20 ECKFAVWTGRAPISDCRILLKASSLEAKQLWVKRLREVI 58 (227)
Q Consensus 20 ~~kFeiW~~r~~~s~~~~iLQAss~evK~~Wvk~IreiL 58 (227)
+..|-|..... .-|.|||.+.+.-+.||..|.-+-
T Consensus 77 ~~VF~L~~~~g----~~~lfqA~~~ee~~~Wi~~I~~~~ 111 (117)
T cd01230 77 PHVFRLRTADW----REFLFQTSSLKELQSWIERINVVA 111 (117)
T ss_pred CcEEEEEcCCC----CEEEEECCCHHHHHHHHHHHHHHH
Confidence 34466665332 249999999999999999998763
No 46
>cd01226 PH_exo84 Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exo84 is a subunit of the exocyt complex, which is important in intracellular trafficking. In metazoa, Exo84 has a PH domain towards its N-terminus. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=79.99 E-value=2.3 Score=33.81 Aligned_cols=32 Identities=13% Similarity=0.179 Sum_probs=24.7
Q ss_pred eeEEEecCCCCCCCceEEEEcCCHHHHHHHHHHHHHH
Q psy12865 21 CKFAVWTGRAPISDCRILLKASSLEAKQLWVKRLREV 57 (227)
Q Consensus 21 ~kFeiW~~r~~~s~~~~iLQAss~evK~~Wvk~Irei 57 (227)
-.|-|-.... .++.||.|++.|..|+..|.+-
T Consensus 66 Nafki~t~~~-----s~i~qaes~~~K~eWl~~le~a 97 (100)
T cd01226 66 KVLKLLIFPE-----SRIYQCESARIKTEWFEELEQA 97 (100)
T ss_pred ceEEEEeCCc-----cEEEEeCCHHHHHHHHHHHHHH
Confidence 3465554332 4999999999999999999875
No 47
>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.
Probab=78.77 E-value=2.3 Score=33.30 Aligned_cols=32 Identities=22% Similarity=0.321 Sum_probs=25.7
Q ss_pred eeEEEecCCCCCCCceEEEEcCCHHHHHHHHHHHHHH
Q psy12865 21 CKFAVWTGRAPISDCRILLKASSLEAKQLWVKRLREV 57 (227)
Q Consensus 21 ~kFeiW~~r~~~s~~~~iLQAss~evK~~Wvk~Irei 57 (227)
..|+|-+. +.+|.|.|.|.+..+.|++.|.+|
T Consensus 70 ~~f~i~t~-----dr~f~l~aese~E~~~Wi~~i~~~ 101 (101)
T cd01257 70 HLIALYTR-----DEYFAVAAENEAEQDSWYQALLEL 101 (101)
T ss_pred eEEEEEeC-----CceEEEEeCCHHHHHHHHHHHhhC
Confidence 45677553 246999999999999999999764
No 48
>cd01225 PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool/Pix contains an N-terminal SH3 domain followed by a RhoGEF (DH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=78.29 E-value=4.4 Score=32.93 Aligned_cols=53 Identities=25% Similarity=0.276 Sum_probs=44.3
Q ss_pred CCCccccccccce--eeccCCceeEEEecCCCCCCCceEEEEcCCHHHHHHHHHHHHHH
Q psy12865 1 MKGRLMTSELGVT--EHIEGDECKFAVWTGRAPISDCRILLKASSLEAKQLWVKRLREV 57 (227)
Q Consensus 1 yK~slk~s~lGlt--E~VegD~~kFeiW~~r~~~s~~~~iLQAss~evK~~Wvk~Irei 57 (227)
||.+|-++.|-|+ |..++-.+.|+|--.- -+++++-..+.+..+.|+..+.+.
T Consensus 54 yqGkLPL~~i~v~~lEd~e~~~~aFeI~G~l----i~~i~v~C~~~~e~~~Wl~hL~~~ 108 (111)
T cd01225 54 YQGKLPLTGIIVTRLEDTEALKNAFEISGPL----IERIVVVCNNPQDAQEWVELLNAN 108 (111)
T ss_pred EeeeecccccEEechHhccCccceEEEeccC----cCcEEEEeCCHHHHHHHHHHHHhh
Confidence 7888899999999 7788888999997433 346899999999999999988764
No 49
>PTZ00283 serine/threonine protein kinase; Provisional
Probab=76.78 E-value=3.6 Score=39.67 Aligned_cols=36 Identities=25% Similarity=0.464 Sum_probs=30.1
Q ss_pred CceeEEEecCCCCCCCceEEEEcCCHHHHHHHHHHHHHHH
Q psy12865 19 DECKFAVWTGRAPISDCRILLKASSLEAKQLWVKRLREVI 58 (227)
Q Consensus 19 D~~kFeiW~~r~~~s~~~~iLQAss~evK~~Wvk~IreiL 58 (227)
-+--|+||+.... +|.+||.+.+..+.|+..|.+.|
T Consensus 454 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 489 (496)
T PTZ00283 454 AAHVFAVAFKTGR----RLLFQARSDPERDAWMQKIQSVL 489 (496)
T ss_pred CCcEEEEEecCCc----EEEEecCCchhHHHHHHHHHHhc
Confidence 4677899976543 49999999999999999998764
No 50
>cd01231 PH_Lnk LNK-family Pleckstrin homology (PH) domain. LNK-family Pleckstrin homology (PH) domain. The Lnk family of proteins consists of Lnk, APS and SH2B. They are adaptor proteins consisting of a PH domain and an SH2 domain, which mediates signaling through growth factor receptors. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. The lnk family PH domain is likely involved in targeting of the adaptor proteins to the plasma membrane.
Probab=76.63 E-value=4 Score=33.01 Aligned_cols=34 Identities=15% Similarity=0.308 Sum_probs=27.1
Q ss_pred CceeEEEecCCCCCCCceEEEEcCCHHHHHHHHHHHHH
Q psy12865 19 DECKFAVWTGRAPISDCRILLKASSLEAKQLWVKRLRE 56 (227)
Q Consensus 19 D~~kFeiW~~r~~~s~~~~iLQAss~evK~~Wvk~Ire 56 (227)
....|.|-..+. .-||++|.+.+..++|+.+|++
T Consensus 73 ~~nTFvLK~~~~----~eyI~Ea~d~~q~~SWla~Ir~ 106 (107)
T cd01231 73 NLYTFVLKVDDN----TDIIFEVGDEQQLNSWLAELRY 106 (107)
T ss_pred cccEEEEEecCC----ceEEEEcCCHHHHHHHHHHHhc
Confidence 445788885442 1499999999999999999986
No 51
>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A.
Probab=75.66 E-value=6.2 Score=31.20 Aligned_cols=34 Identities=21% Similarity=0.344 Sum_probs=24.4
Q ss_pred ceeEEEecCCCCCCCceEEEEcCCHHHHHHHHHHHHHH
Q psy12865 20 ECKFAVWTGRAPISDCRILLKASSLEAKQLWVKRLREV 57 (227)
Q Consensus 20 ~~kFeiW~~r~~~s~~~~iLQAss~evK~~Wvk~Irei 57 (227)
+.-|.|-.... .-|.+||.|.+.-+.||..|.-.
T Consensus 84 ~~VFrL~~~dg----~e~Lfqa~~~~~m~~Wi~~IN~~ 117 (119)
T PF15410_consen 84 KNVFRLRTADG----SEYLFQASDEEEMNEWIDAINYA 117 (119)
T ss_dssp SSEEEEE-TTS-----EEEEE-SSHHHHHHHHHHHHHH
T ss_pred CeEEEEEeCCC----CEEEEECCCHHHHHHHHHHHhhh
Confidence 55677764332 24999999999999999999753
No 52
>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain. Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=75.59 E-value=6.9 Score=30.90 Aligned_cols=34 Identities=21% Similarity=0.339 Sum_probs=27.0
Q ss_pred CCceeEEEecCCCCCCCceEEEEcCCHHHHHHHHHHHHH
Q psy12865 18 GDECKFAVWTGRAPISDCRILLKASSLEAKQLWVKRLRE 56 (227)
Q Consensus 18 gD~~kFeiW~~r~~~s~~~~iLQAss~evK~~Wvk~Ire 56 (227)
+.+..|.|-+.. ..|.|.|.|.+.++.|++.|..
T Consensus 69 ~~~~~f~I~tp~-----R~f~l~Aete~E~~~Wi~~l~~ 102 (104)
T cd01236 69 GQKFSICILTPD-----KEHFIKAETKEEISWWLNMLMV 102 (104)
T ss_pred CCccEEEEECCC-----ceEEEEeCCHHHHHHHHHHHHh
Confidence 345678886544 3599999999999999998863
No 53
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=73.38 E-value=2.9 Score=32.48 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=20.7
Q ss_pred ccccccchHHHHHHHHHHHHHHH
Q psy12865 147 SPASASSLEAKQLWVKRLREVIQ 169 (227)
Q Consensus 147 ~vlKass~e~Kq~WVk~iREViQ 169 (227)
.+|.|+|.+-|+.|++.|.+.|+
T Consensus 76 ~~l~A~s~~Ek~~Wi~~i~~aI~ 98 (99)
T cd01220 76 ITVAASTRAEKEKWLADLSKAIA 98 (99)
T ss_pred EEEECCCHHHHHHHHHHHHHHhh
Confidence 55689999999999999999986
No 54
>cd01228 PH_BCR-related BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. The BCR-related protein has a RhoGEF(DH) domain followed by a PH domain, a C2 domain and a RhoGAP domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinases, tyrosine kinases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=65.20 E-value=8.1 Score=30.73 Aligned_cols=25 Identities=12% Similarity=0.157 Sum_probs=22.4
Q ss_pred ceEEEEcCCHHHHHHHHHHHHHHHH
Q psy12865 35 CRILLKASSLEAKQLWVKRLREVIQ 59 (227)
Q Consensus 35 ~~~iLQAss~evK~~Wvk~IreiL~ 59 (227)
-+|++-|+|...|..|+..|.++..
T Consensus 71 KSf~~~asS~~Er~eW~~hI~~~~~ 95 (96)
T cd01228 71 KSYTFLLSSDYERSEWRESIQKLQK 95 (96)
T ss_pred ceEEEEecCHHHHHHHHHHHHHHhc
Confidence 3599999999999999999998853
No 55
>cd01241 PH_Akt Akt pleckstrin homology (PH) domain. Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=65.01 E-value=21 Score=27.29 Aligned_cols=36 Identities=17% Similarity=0.400 Sum_probs=24.5
Q ss_pred ceeEEEecCC-CCCCCceEEEEcCCHHHHHHHHHHHHHH
Q psy12865 20 ECKFAVWTGR-APISDCRILLKASSLEAKQLWVKRLREV 57 (227)
Q Consensus 20 ~~kFeiW~~r-~~~s~~~~iLQAss~evK~~Wvk~Irei 57 (227)
+..|.|-.-. ....+ | ++.|.|.+..+.|++.|+.|
T Consensus 65 ~~~F~i~~~~~~~~~~-r-~f~a~s~ee~~eWi~ai~~v 101 (102)
T cd01241 65 PNTFIIRCLQWTTVIE-R-TFHVESPEEREEWIHAIQTV 101 (102)
T ss_pred cceEEEEeccCCcccC-E-EEEeCCHHHHHHHHHHHHhh
Confidence 4579885211 11111 2 45799999999999999876
No 56
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=63.45 E-value=6.1 Score=30.28 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=20.9
Q ss_pred ccccccchHHHHHHHHHHHHHHHh
Q psy12865 147 SPASASSLEAKQLWVKRLREVIQE 170 (227)
Q Consensus 147 ~vlKass~e~Kq~WVk~iREViQE 170 (227)
.+|-|+|-+-|.+|++.|.++|.+
T Consensus 78 f~l~A~s~eEk~~W~~ai~~~i~~ 101 (101)
T cd01219 78 LELQARTQKEKNDWVQAIFSIIDE 101 (101)
T ss_pred EEEEcCCHHHHHHHHHHHHHHhhC
Confidence 455799999999999999999864
No 57
>KOG1264|consensus
Probab=61.57 E-value=7.9 Score=41.34 Aligned_cols=36 Identities=25% Similarity=0.281 Sum_probs=26.4
Q ss_pred EEEecCCCCCCCCccccccchHHHHHHHHHHHHHHH
Q psy12865 134 YFSSALPLAAPPKSPASASSLEAKQLWVKRLREVIQ 169 (227)
Q Consensus 134 ve~le~~~~~p~k~vlKass~e~Kq~WVk~iREViQ 169 (227)
|++|+-...+-+--++.|++.|.-++|+|+|||+.+
T Consensus 876 vf~l~~~~~~~~~~~~aadsqEe~~eW~k~i~E~t~ 911 (1267)
T KOG1264|consen 876 VFILEPKWQGKPPVEFAADSQEELFEWFKSIREITW 911 (1267)
T ss_pred EEEechhhhcCCceEEecCchHHHHHHHHHHHHHHH
Confidence 444444433333366789999999999999999964
No 58
>cd01221 PH_ephexin Ephexin Pleckstrin homology (PH) domain. Ephexin Pleckstrin homology (PH) domain. Ephexin contains a RhoGEF (DH) followed by a PH domain and an SH3 domain. The ephexin PH domain is believed to act with the DH domain in mediating protein-protein interactions with the Eph receptor. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=56.93 E-value=17 Score=29.90 Aligned_cols=37 Identities=22% Similarity=0.295 Sum_probs=25.8
Q ss_pred CceeEEEe-cCCCCCCCceEEEEcCCHHHHHHHHHHHH
Q psy12865 19 DECKFAVW-TGRAPISDCRILLKASSLEAKQLWVKRLR 55 (227)
Q Consensus 19 D~~kFeiW-~~r~~~s~~~~iLQAss~evK~~Wvk~Ir 55 (227)
.+.-|-|- ..........++|+|+|.+.|+.|+..|+
T Consensus 82 ~~~~F~ltLl~N~~gk~~el~L~a~S~sdr~rWi~Al~ 119 (125)
T cd01221 82 RPNLFLLTLLRNADDKQAELLLSADSQSDRERWLSALA 119 (125)
T ss_pred CCceEEEEeeccCCCCEEEEEEECCCHHHHHHHHHhcC
Confidence 45678886 22111222359999999999999998764
No 59
>PF15406 PH_6: Pleckstrin homology domain
Probab=53.49 E-value=22 Score=29.01 Aligned_cols=39 Identities=21% Similarity=0.310 Sum_probs=29.6
Q ss_pred ceeeccCCceeEEEecCCCCCCCceEEEEcCCHHHHHHHHHHHH
Q psy12865 12 VTEHIEGDECKFAVWTGRAPISDCRILLKASSLEAKQLWVKRLR 55 (227)
Q Consensus 12 ltE~VegD~~kFeiW~~r~~~s~~~~iLQAss~evK~~Wvk~Ir 55 (227)
++|-..+-+-+|-+-..+ .+-++||+|++.++.||..|.
T Consensus 72 ase~~~~g~~kF~f~~~G-----~khtF~A~s~aERD~Wv~~lk 110 (112)
T PF15406_consen 72 ASEPEKDGSNKFHFKIKG-----HKHTFEAASAAERDNWVAQLK 110 (112)
T ss_pred ccccccCCCceEEEEeCC-----ceeeeecCCHHHhccHHHHhh
Confidence 345455666789887533 148999999999999999875
No 60
>KOG4424|consensus
Probab=53.48 E-value=25 Score=35.96 Aligned_cols=38 Identities=18% Similarity=0.333 Sum_probs=30.6
Q ss_pred CceeEEEecCCCCCCCceEEEEcCCHHHHHHHHHHHHHHHHhh
Q psy12865 19 DECKFAVWTGRAPISDCRILLKASSLEAKQLWVKRLREVIQET 61 (227)
Q Consensus 19 D~~kFeiW~~r~~~s~~~~iLQAss~evK~~Wvk~IreiL~~q 61 (227)
-|..|-+.-.. ....|||.|.+.|..||..|+..|..-
T Consensus 335 ~~~tF~~~G~~-----r~vel~a~t~~ek~eWv~~I~~~Id~~ 372 (623)
T KOG4424|consen 335 LPHTFILTGKK-----RGVELQARTEQEKKEWVQAIQDAIDKH 372 (623)
T ss_pred CCceEEEeccc-----ceEEeecCchhhHHHHHHHHHHHHHHH
Confidence 35677765422 248999999999999999999999875
No 61
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=50.23 E-value=12 Score=26.20 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=20.0
Q ss_pred CccccccchHHHHHHHHHHHHHH
Q psy12865 146 KSPASASSLEAKQLWVKRLREVI 168 (227)
Q Consensus 146 k~vlKass~e~Kq~WVk~iREVi 168 (227)
...|.|.+.+.+..|++.|++++
T Consensus 81 ~~~~~~~s~~~~~~W~~~i~~~~ 103 (104)
T PF00169_consen 81 SYLFSAESEEERKRWIQAIQKAI 103 (104)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHH
T ss_pred EEEEEcCCHHHHHHHHHHHHHHh
Confidence 35567999999999999999986
No 62
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=47.06 E-value=26 Score=23.85 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=20.4
Q ss_pred CccccccchHHHHHHHHHHHHHH
Q psy12865 146 KSPASASSLEAKQLWVKRLREVI 168 (227)
Q Consensus 146 k~vlKass~e~Kq~WVk~iREVi 168 (227)
..++.|.+.+.++.|+..|++++
T Consensus 79 ~~~f~~~s~~~~~~W~~~i~~~~ 101 (102)
T smart00233 79 SYLLQAESEEEREEWVDALRKAI 101 (102)
T ss_pred eEEEEcCCHHHHHHHHHHHHHhh
Confidence 46678999999999999999886
No 63
>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain. Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=46.29 E-value=17 Score=28.66 Aligned_cols=21 Identities=14% Similarity=0.422 Sum_probs=18.8
Q ss_pred cccchHHHHHHHHHHHHHHHh
Q psy12865 150 SASSLEAKQLWVKRLREVIQE 170 (227)
Q Consensus 150 Kass~e~Kq~WVk~iREViQE 170 (227)
-|+|.+-|++|+++|-+.|..
T Consensus 80 ~A~s~~eK~eWl~~i~~ai~~ 100 (104)
T cd01218 80 YAATETEKREWMLHINKCVTD 100 (104)
T ss_pred EcCCHHHHHHHHHHHHHHHHH
Confidence 499999999999999999854
No 64
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=45.71 E-value=16 Score=27.03 Aligned_cols=20 Identities=20% Similarity=0.489 Sum_probs=17.9
Q ss_pred ccccchHHHHHHHHHHHHHH
Q psy12865 149 ASASSLEAKQLWVKRLREVI 168 (227)
Q Consensus 149 lKass~e~Kq~WVk~iREVi 168 (227)
|.|.+.+..+.||..||.+|
T Consensus 82 ~~a~s~~e~~~Wi~ai~~~i 101 (101)
T cd01235 82 FLAENINEAQRWKEKIQQCI 101 (101)
T ss_pred EECCCHHHHHHHHHHHHhhC
Confidence 36899999999999999986
No 65
>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain. Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=44.14 E-value=56 Score=25.92 Aligned_cols=34 Identities=15% Similarity=0.277 Sum_probs=26.1
Q ss_pred CCceeEEEecCCCCCCCceEEEEcCCHHHHHHHHHHHHH
Q psy12865 18 GDECKFAVWTGRAPISDCRILLKASSLEAKQLWVKRLRE 56 (227)
Q Consensus 18 gD~~kFeiW~~r~~~s~~~~iLQAss~evK~~Wvk~Ire 56 (227)
+-.+.|.|=.+. .+|.|.|.|....+.|+..|.+
T Consensus 87 ~~~~~~~i~t~~-----R~~~l~a~s~~~~~~Wi~~i~~ 120 (121)
T cd01254 87 GLRHGLKITNSN-----RSLKLKCKSSRKLKQWMASIED 120 (121)
T ss_pred CCceEEEEEcCC-----cEEEEEeCCHHHHHHHHHHHHh
Confidence 445566664433 3699999999999999999875
No 66
>cd01242 PH_ROK Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok is a serine/threonine kinase that binds GTP-rho. It consists of a kinase domain, a coiled coil region and a PH domain. The Rok PH domain is interrupted by a C1 domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=44.05 E-value=45 Score=27.25 Aligned_cols=39 Identities=23% Similarity=0.335 Sum_probs=30.2
Q ss_pred cCCceeEEEecCCCCCCCceEEEEcCCHHHHHHHHHHHHHHH
Q psy12865 17 EGDECKFAVWTGRAPISDCRILLKASSLEAKQLWVKRLREVI 58 (227)
Q Consensus 17 egD~~kFeiW~~r~~~s~~~~iLQAss~evK~~Wvk~IreiL 58 (227)
.+=||-|-|-.+.. + ....|=|.+.+.|+.||..+.+-+
T Consensus 72 kDiP~IF~I~~~~~--~-~~lllLA~s~~ek~kWV~~L~~~~ 110 (112)
T cd01242 72 KEIPKIFQILYANE--A-RDLLLLAPQTDEQNKWVSRLVKKI 110 (112)
T ss_pred ccCCeEEEEEeCCc--c-ceEEEEeCCchHHHHHHHHHHHhc
Confidence 34589999987553 2 346678999999999999988754
No 67
>COG1093 SUI2 Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis]
Probab=42.16 E-value=24 Score=32.72 Aligned_cols=36 Identities=19% Similarity=0.182 Sum_probs=28.9
Q ss_pred cceEEEecCCCCCCCCccccccchHHHHHHHHHHHHHHHhh
Q psy12865 131 QETYFSSALPLAAPPKSPASASSLEAKQLWVKRLREVIQET 171 (227)
Q Consensus 131 gqtve~le~~~~~p~k~vlKass~e~Kq~WVk~iREViQE~ 171 (227)
|..|.|+|+|.-.-= .--.|...-|||+||.++-|.
T Consensus 26 GAyv~L~EY~g~Eg~-----ihiSEvas~wVknIrd~vkeg 61 (269)
T COG1093 26 GAYVELDEYPGKEGF-----IHISEVASGWVKNIRDYVKEG 61 (269)
T ss_pred ccEEEeeccCCeeee-----EEHHHHHHHHHHHHHHHhhcC
Confidence 889999998753333 445689999999999999887
No 68
>KOG0521|consensus
Probab=41.40 E-value=52 Score=34.67 Aligned_cols=39 Identities=23% Similarity=0.316 Sum_probs=32.1
Q ss_pred CCceeEEEecCCCCCCCceEEEEcCCHHHHHHHHHHHHHHHHhh
Q psy12865 18 GDECKFAVWTGRAPISDCRILLKASSLEAKQLWVKRLREVIQET 61 (227)
Q Consensus 18 gD~~kFeiW~~r~~~s~~~~iLQAss~evK~~Wvk~IreiL~~q 61 (227)
+..++|+|-+.. . .|+|||-+.-.-++|+..|....-.-
T Consensus 333 drr~CF~iiS~t-k----s~~lQAes~~d~~~Wi~~i~nsi~s~ 371 (785)
T KOG0521|consen 333 DRRFCFEIISPT-K----SYLLQAESEKDCQDWISALQNSILSA 371 (785)
T ss_pred cceeeEEEecCC-c----ceEEecCchhHHHHHHHHHHHHHHHH
Confidence 466789999833 2 49999999999999999999887655
No 69
>KOG4226|consensus
Probab=40.36 E-value=19 Score=34.14 Aligned_cols=27 Identities=15% Similarity=-0.084 Sum_probs=23.4
Q ss_pred ccccc--ceEEEEecceEEEecCCCCCCC
Q psy12865 119 KQLWV--KRLREVIQETYFSSALPLAAPP 145 (227)
Q Consensus 119 d~~a~--~elsv~~gqtve~le~~~~~p~ 145 (227)
-|.+. .||+..+|+++||++.|..-|+
T Consensus 199 sFsssndeELsFeKGerleivd~Pe~DPd 227 (379)
T KOG4226|consen 199 SFSSSNDEELSFEKGERLEIVDKPENDPD 227 (379)
T ss_pred cccCCChhhcccccCceeEeccCCCCCch
Confidence 44554 6899999999999999999998
No 70
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=39.36 E-value=67 Score=24.64 Aligned_cols=20 Identities=10% Similarity=0.508 Sum_probs=18.4
Q ss_pred cccchHHHHHHHHHHHHHHH
Q psy12865 150 SASSLEAKQLWVKRLREVIQ 169 (227)
Q Consensus 150 Kass~e~Kq~WVk~iREViQ 169 (227)
-|.+.+-..+||+.|+.||.
T Consensus 82 ~a~s~~e~~~Wi~ai~~v~~ 101 (103)
T cd01251 82 ACETEQDRREWIAAFQNVLS 101 (103)
T ss_pred ECCCHHHHHHHHHHHHHHhc
Confidence 59999999999999999974
No 71
>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain. Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str
Probab=39.36 E-value=23 Score=27.23 Aligned_cols=21 Identities=24% Similarity=0.306 Sum_probs=18.4
Q ss_pred ccccccchHHHHHHHHHHHHH
Q psy12865 147 SPASASSLEAKQLWVKRLREV 167 (227)
Q Consensus 147 ~vlKass~e~Kq~WVk~iREV 167 (227)
..|.|.|-+..+.||+.||+|
T Consensus 87 y~l~A~s~ee~~~Wi~~I~~~ 107 (108)
T cd01266 87 LYLVAKNEEEMTLWVNCICKL 107 (108)
T ss_pred EEEEECCHHHHHHHHHHHHhh
Confidence 344799999999999999987
No 72
>KOG3520|consensus
Probab=38.90 E-value=36 Score=37.39 Aligned_cols=55 Identities=15% Similarity=0.256 Sum_probs=43.3
Q ss_pred cccccccceeeccCCceeEEEecCCCCCCCceEEEEcCCHHHHHHHHHHHHHHHHhh
Q psy12865 5 LMTSELGVTEHIEGDECKFAVWTGRAPISDCRILLKASSLEAKQLWVKRLREVIQET 61 (227)
Q Consensus 5 lk~s~lGltE~VegD~~kFeiW~~r~~~s~~~~iLQAss~evK~~Wvk~IreiL~~q 61 (227)
|++..+ |...|..|.+-|-|-+-.- ....-|-|.|.|.+.|++|++-|.+.....
T Consensus 670 isL~~l-ivRevAtd~ka~FlIs~s~-~~pqmYEL~a~T~serntW~~li~~~v~s~ 724 (1167)
T KOG3520|consen 670 ISLQKL-IVREVATDEKAFFLISMSD-QGPEMYELVAQSKSERNTWIQLIQDAVASC 724 (1167)
T ss_pred eehHHH-HHHHHhccccceEEEecCC-CCCeeEEEecCCHHHHHHHHHHHHHHHHhC
Confidence 445566 7788889999887775441 223469999999999999999999998877
No 73
>cd01226 PH_exo84 Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exo84 is a subunit of the exocyt complex, which is important in intracellular trafficking. In metazoa, Exo84 has a PH domain towards its N-terminus. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=37.69 E-value=52 Score=26.16 Aligned_cols=19 Identities=21% Similarity=0.385 Sum_probs=17.1
Q ss_pred cccchHHHHHHHHHHHHHH
Q psy12865 150 SASSLEAKQLWVKRLREVI 168 (227)
Q Consensus 150 Kass~e~Kq~WVk~iREVi 168 (227)
.|.+-+.|.+|+.+|.|.+
T Consensus 80 qaes~~~K~eWl~~le~a~ 98 (100)
T cd01226 80 QCESARIKTEWFEELEQAK 98 (100)
T ss_pred EeCCHHHHHHHHHHHHHHh
Confidence 4899999999999999875
No 74
>cd01243 PH_MRCK MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK consists of a serine/threonine kinase domain, a cysteine rich (C1) region, a PH domain and a p21 binding motif. It has been shown to promote cytoskeletal reorganization, which affects many biological processes. The MRCK PH domain is responsible for its targeting to cell to cell junctions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=36.07 E-value=82 Score=26.11 Aligned_cols=40 Identities=35% Similarity=0.544 Sum_probs=28.0
Q ss_pred CCceeEEEecCC-CCC-CCceEEEEcCCHHHHHHHHHHHHHH
Q psy12865 18 GDECKFAVWTGR-API-SDCRILLKASSLEAKQLWVKRLREV 57 (227)
Q Consensus 18 gD~~kFeiW~~r-~~~-s~~~~iLQAss~evK~~Wvk~Irei 57 (227)
+=||-|-|-.+- .+. +....-|=|.|...|+.||..+.++
T Consensus 77 DiP~If~I~~~~~~~~~~~~~~~~lA~s~~eK~kWV~aL~~l 118 (122)
T cd01243 77 DIPCIFRVTTSQISASSSKCSTLMLADTEEEKSKWVGALSEL 118 (122)
T ss_pred cCCeEEEEEEecccCCCCccEEEEEeCCchHHHHHHHHHHHH
Confidence 457888887543 222 2223444799999999999999887
No 75
>KOG2778|consensus
Probab=35.25 E-value=26 Score=33.16 Aligned_cols=21 Identities=38% Similarity=0.661 Sum_probs=17.2
Q ss_pred cchHHHHHHHHHHHHHHHhhh
Q psy12865 152 SSLEAKQLWVKRLREVIQETY 172 (227)
Q Consensus 152 ss~e~Kq~WVk~iREViQE~~ 172 (227)
...+--|+|+.++|-||||||
T Consensus 186 g~~~~eqeW~d~vrpVIqeRi 206 (328)
T KOG2778|consen 186 GPCEKEQEWLDKVRPVIQERI 206 (328)
T ss_pred CCCCccHhHHHHHHHHHHHHH
Confidence 344455799999999999997
No 76
>PF08458 PH_2: Plant pleckstrin homology-like region; InterPro: IPR013666 This domain describes a pleckstrin homology (PH)-like region found in several plant proteins of unknown function.
Probab=33.89 E-value=1.1e+02 Score=24.84 Aligned_cols=37 Identities=14% Similarity=0.332 Sum_probs=30.1
Q ss_pred ceeEEEecCCCCCCCceEEEEcCCHHHHHHHHHHHHHHHHhh
Q psy12865 20 ECKFAVWTGRAPISDCRILLKASSLEAKQLWVKRLREVIQET 61 (227)
Q Consensus 20 ~~kFeiW~~r~~~s~~~~iLQAss~evK~~Wvk~IreiL~~q 61 (227)
.+-|+|-+.+. .+-|.+.|...++.|+..|..+|...
T Consensus 70 ~~yfgL~T~~G-----~vEfec~~~~~~k~W~~gI~~mL~~~ 106 (110)
T PF08458_consen 70 RRYFGLKTAQG-----VVEFECDSQREYKRWVQGIQHMLSQV 106 (110)
T ss_pred EEEEEEEecCc-----EEEEEeCChhhHHHHHHHHHHHHHHh
Confidence 35678876642 48899999999999999999999765
No 77
>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C.
Probab=31.97 E-value=1e+02 Score=23.99 Aligned_cols=33 Identities=21% Similarity=0.414 Sum_probs=24.4
Q ss_pred CceeEEEecCCCCCCCceEEEEcCCHHHHHHHHHHHHH
Q psy12865 19 DECKFAVWTGRAPISDCRILLKASSLEAKQLWVKRLRE 56 (227)
Q Consensus 19 D~~kFeiW~~r~~~s~~~~iLQAss~evK~~Wvk~Ire 56 (227)
+.+.|-|-. ...+|.|.|-+.+.+.+|+..|.+
T Consensus 79 ~~~~~~i~T-----~~kt~~l~~~t~~d~~~Wi~aL~~ 111 (112)
T PF15413_consen 79 HLKVFSIFT-----PTKTFHLRCETREDRYDWIEALQE 111 (112)
T ss_dssp SSEEEEEE------SS-EEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCcEEEC-----CCcEEEEEECCHHHHHHHHHHHHh
Confidence 445566622 234799999999999999998875
No 78
>cd01248 PH_PLC Phospholipase C (PLC) pleckstrin homology (PH) domain. Phospholipase C (PLC) pleckstrin homology (PH) domain. There are several isozymes of PLC (beta, gamma, delta, epsilon. zeta). While, PLC beta, gamma and delta all have N-terminal PH domains, lipid binding specificity is not conserved between them. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=31.07 E-value=96 Score=24.01 Aligned_cols=39 Identities=28% Similarity=0.308 Sum_probs=29.9
Q ss_pred CCceeEEEecCCCCCCCceEEEEcCCHHHHHHHHHHHHHH
Q psy12865 18 GDECKFAVWTGRAPISDCRILLKASSLEAKQLWVKRLREV 57 (227)
Q Consensus 18 gD~~kFeiW~~r~~~s~~~~iLQAss~evK~~Wvk~Irei 57 (227)
-.++.|-|-++..- .....-|=|+|.++-+.|+..|+.|
T Consensus 77 ~e~~~fTIiy~~~~-~~k~L~lVA~s~~~a~~W~~gL~~L 115 (115)
T cd01248 77 LEERCFTIVYGTDL-NLKSLDLVAPSEEEAKTWVSGLRKL 115 (115)
T ss_pred ccccEEEEEECCCC-CeeEEEEEECCHHHHHHHHHHHhhC
Confidence 56788888877742 2334677899999999999998753
No 79
>KOG0930|consensus
Probab=29.15 E-value=62 Score=30.94 Aligned_cols=25 Identities=24% Similarity=0.473 Sum_probs=22.3
Q ss_pred eEEEEcCCHHHHHHHHHHHHHHHHh
Q psy12865 36 RILLKASSLEAKQLWVKRLREVIQE 60 (227)
Q Consensus 36 ~~iLQAss~evK~~Wvk~IreiL~~ 60 (227)
.|-+-|+++|.|..|++.|+..+..
T Consensus 353 vYrIsA~~~Ee~~~Wi~sI~a~is~ 377 (395)
T KOG0930|consen 353 VYRISAPTPEEKDEWIKSIKAAISR 377 (395)
T ss_pred EEEeeCCCHHHHHHHHHHHHHHhcc
Confidence 4888999999999999999988763
No 80
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=27.80 E-value=71 Score=30.41 Aligned_cols=25 Identities=16% Similarity=0.468 Sum_probs=22.2
Q ss_pred CceEEEEcCCHHHHHHHHHHHHHHH
Q psy12865 34 DCRILLKASSLEAKQLWVKRLREVI 58 (227)
Q Consensus 34 ~~~~iLQAss~evK~~Wvk~IreiL 58 (227)
..+|.++|.|.+....|++.|+.+|
T Consensus 452 ~~~~~~~~~~~~~~~~W~~~~~~~~ 476 (478)
T PTZ00267 452 GQKIIAYAKTAEDRDQWISKFQRAC 476 (478)
T ss_pred CcEEEEecCChHHHHHHHHHHHHHh
Confidence 4578889999999999999999875
No 81
>cd01228 PH_BCR-related BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. The BCR-related protein has a RhoGEF(DH) domain followed by a PH domain, a C2 domain and a RhoGAP domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinases, tyrosine kinases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=26.26 E-value=55 Score=26.06 Aligned_cols=27 Identities=19% Similarity=0.160 Sum_probs=20.9
Q ss_pred CCCCCccc-cccchHHHHHHHHHHHHHH
Q psy12865 142 AAPPKSPA-SASSLEAKQLWVKRLREVI 168 (227)
Q Consensus 142 ~~p~k~vl-Kass~e~Kq~WVk~iREVi 168 (227)
..|.|+-+ =|+|-.-|.+|+.||++.-
T Consensus 67 ~~~~KSf~~~asS~~Er~eW~~hI~~~~ 94 (96)
T cd01228 67 NKNGKSYTFLLSSDYERSEWRESIQKLQ 94 (96)
T ss_pred ccCCceEEEEecCHHHHHHHHHHHHHHh
Confidence 55666544 4888888999999999873
No 82
>PF15277 Sec3-PIP2_bind: Exocyst complex component SEC3 N-terminal PIP2 binding PH; PDB: 3HIE_D 3A58_E.
Probab=25.54 E-value=2.8e+02 Score=21.24 Aligned_cols=48 Identities=23% Similarity=0.279 Sum_probs=35.6
Q ss_pred ccccccceeeccCC--ceeEEEecCCCCCCCceEEEEcCCHHHHHHHHHHHHHHHH
Q psy12865 6 MTSELGVTEHIEGD--ECKFAVWTGRAPISDCRILLKASSLEAKQLWVKRLREVIQ 59 (227)
Q Consensus 6 k~s~lGltE~VegD--~~kFeiW~~r~~~s~~~~iLQAss~evK~~Wvk~IreiL~ 59 (227)
.+.+|-.-+-+..+ .+-|.|-+++ .|-.+|.|.+.|...+.-|-++-.
T Consensus 40 ~L~eL~~I~~~~~~~~~~~F~l~~~k------~y~W~a~s~~Ek~~Fi~~L~k~~~ 89 (91)
T PF15277_consen 40 DLDELKAIDGINPDKDTPEFDLTFDK------PYYWEASSAKEKNTFIRSLWKLYQ 89 (91)
T ss_dssp EGGG--EEEE-SSS--TTEEEEESSS------EEEEEESSHHHHHHHHHHHHHHHH
T ss_pred ehhhceeeeeecCCCCCcCEEEEECC------CcEEEeCCHHHHHHHHHHHHHHhc
Confidence 35666666666655 5689999977 399999999999999998877643
No 83
>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.
Probab=24.78 E-value=1.5e+02 Score=23.55 Aligned_cols=37 Identities=24% Similarity=0.354 Sum_probs=26.3
Q ss_pred CceeEEEecCCCCCCCceEEEEcCCHHHHHHHHHHHHHHHHhh
Q psy12865 19 DECKFAVWTGRAPISDCRILLKASSLEAKQLWVKRLREVIQET 61 (227)
Q Consensus 19 D~~kFeiW~~r~~~s~~~~iLQAss~evK~~Wvk~IreiL~~q 61 (227)
+...|.|-...+ +|.|..++-...+ |++.|.+++...
T Consensus 66 ~~~~F~I~tp~R-----tY~l~d~~~~A~~-W~~~I~~~~~~~ 102 (104)
T PF14593_consen 66 SFKTFFIHTPKR-----TYYLEDPEGNAQQ-WVEAIEEVKKQY 102 (104)
T ss_dssp SSSEEEEEETTE-----EEEEE-TTS-HHH-HHHHHHHHHHHH
T ss_pred cCCEEEEECCCc-----EEEEECCCCCHHH-HHHHHHHHHHHh
Confidence 445898887653 5999987777554 999999997643
No 84
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=22.75 E-value=53 Score=25.34 Aligned_cols=18 Identities=33% Similarity=0.645 Sum_probs=16.5
Q ss_pred cccchHHHHHHHHHHHHH
Q psy12865 150 SASSLEAKQLWVKRLREV 167 (227)
Q Consensus 150 Kass~e~Kq~WVk~iREV 167 (227)
.|.+.+-.++||+.||.|
T Consensus 89 ~A~s~~er~~WI~ai~~~ 106 (106)
T cd01238 89 FAPTEELRKRWIKALKQV 106 (106)
T ss_pred EcCCHHHHHHHHHHHHhC
Confidence 699999999999999875
No 85
>cd01240 PH_beta-ARK Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta ARK1 is a G protein-coupled receptor kinase (GRK). It phosphorylates activated G-protein coupled receptors leading to the release of the previously bound heterotrimeric G protein agonist and thus signal termination. It consists of a domain found in regulators of G-protein signaling (RGS)(RH), a serine/threonine kinase domain and a C-terminal PH domain. The Beta-Ark 1 PH domain has an extended C-terminal helix, which mediates interactions with G beta gamma subunits. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or
Probab=22.38 E-value=91 Score=25.67 Aligned_cols=45 Identities=22% Similarity=0.373 Sum_probs=31.9
Q ss_pred ccCCceeEEEecCCCCCCCceEEEEcCCHHHHHHHHHHHHHHHHhh-cccc
Q psy12865 16 IEGDECKFAVWTGRAPISDCRILLKASSLEAKQLWVKRLREVIQET-YFSS 65 (227)
Q Consensus 16 VegD~~kFeiW~~r~~~s~~~~iLQAss~evK~~Wvk~IreiL~~q-~l~~ 65 (227)
++|+.|- -|-.+. +.+|+|++.+...=..|.++|++...+- .|.+
T Consensus 61 iK~~~CI-~ik~k~----~~k~vlt~~d~i~l~qW~~elr~a~r~Sq~ll~ 106 (116)
T cd01240 61 IKEENCI-LLKIRD----EKKIVLTNSDEIELKQWKKELRDAHRESQQLLQ 106 (116)
T ss_pred eccCceE-EEEEcC----CceEEEecCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677763 343333 3469999999988889999999987654 3443
No 86
>KOG4278|consensus
Probab=22.01 E-value=62 Score=34.42 Aligned_cols=46 Identities=13% Similarity=-0.082 Sum_probs=34.5
Q ss_pred cccchhccccc--ceEEEEecceEEEecCCCCCCCCccccccchHHHHHHHH
Q psy12865 113 ASSLEAKQLWV--KRLREVIQETYFSSALPLAAPPKSPASASSLEAKQLWVK 162 (227)
Q Consensus 113 ~~~v~~d~~a~--~elsv~~gqtve~le~~~~~p~k~vlKass~e~Kq~WVk 162 (227)
+--++-||+|+ +.|++++|+.|-||-+.+.+.=.- |.+ .+.|-||-
T Consensus 92 LFVALYDFvasGdntLSitKGeklRvLGYN~NgEWcE---art-KNGqGWVP 139 (1157)
T KOG4278|consen 92 LFVALYDFVASGDNTLSITKGEKLRVLGYNKNGEWCE---ART-KNGQGWVP 139 (1157)
T ss_pred eeEeeeeeeccccceeeeecCceEEEeeecCCCccee---ecc-cCCCcccc
Confidence 33388899998 889999999999999988876521 112 44677775
No 87
>KOG2996|consensus
Probab=21.41 E-value=65 Score=33.57 Aligned_cols=40 Identities=15% Similarity=-0.024 Sum_probs=31.8
Q ss_pred CCCCCCCcccccc-chhccccc----ceEEEEecceEEEecCCCC
Q psy12865 103 GSGNTTDSDKASS-LEAKQLWV----KRLREVIQETYFSSALPLA 142 (227)
Q Consensus 103 ~s~n~~ds~k~~~-v~~d~~a~----~elsv~~gqtve~le~~~~ 142 (227)
.+.|..=+.+..+ ++|+|.++ .||+.++|+.|-|+..-.+
T Consensus 794 ~~~~sv~s~~~~g~AvarYdf~ard~~eLSlk~GDvV~i~~k~g~ 838 (865)
T KOG2996|consen 794 RAGNSVLSPKVVGTAVARYDFCARDMRELSLKEGDVVKIYDKVGE 838 (865)
T ss_pred cccccccCcceeeeeeeccccCCCchhhcccccCCEEEEehhccc
Confidence 3455566677777 99999998 6899999999999986544
No 88
>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain. Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=21.14 E-value=2.3e+02 Score=22.81 Aligned_cols=37 Identities=14% Similarity=0.150 Sum_probs=27.7
Q ss_pred CceeEEEecCCCC-CCCceEEEEcCCHHHHHHHHHHHH
Q psy12865 19 DECKFAVWTGRAP-ISDCRILLKASSLEAKQLWVKRLR 55 (227)
Q Consensus 19 D~~kFeiW~~r~~-~s~~~~iLQAss~evK~~Wvk~Ir 55 (227)
+..||.|...-.. ...+.|.|.|.|.+.-+.|+...|
T Consensus 63 ~~~kf~I~l~~ps~~~~r~y~l~cdsEeqya~Wmaa~r 100 (106)
T cd01237 63 AQQKFHIKLLIPTAEGMNEVWLRCDNEKQYAKWMAACR 100 (106)
T ss_pred cccceEEEEecCCccCCeEEEEECCCHHHHHHHHHHHH
Confidence 3668988854321 123479999999999999999876
No 89
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=20.44 E-value=74 Score=25.06 Aligned_cols=24 Identities=17% Similarity=0.234 Sum_probs=18.4
Q ss_pred CCCcc-ccccchHHHHHHHHHHHHH
Q psy12865 144 PPKSP-ASASSLEAKQLWVKRLREV 167 (227)
Q Consensus 144 p~k~v-lKass~e~Kq~WVk~iREV 167 (227)
|.|+- |+|.+-+.++.||+.|.-+
T Consensus 76 p~rt~~l~A~se~e~e~WI~~i~~a 100 (101)
T cd01264 76 ADKTYILKAKDEKNAEEWLQCLNIA 100 (101)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhh
Confidence 44443 4899999999999988643
No 90
>KOG0092|consensus
Probab=20.42 E-value=1.3e+02 Score=26.82 Aligned_cols=46 Identities=24% Similarity=0.425 Sum_probs=28.1
Q ss_pred eeccCCceeEEEe-cCCCCC--C--------Cc----eEEE-EcCCHHHHHHHHHHHHHHHH
Q psy12865 14 EHIEGDECKFAVW-TGRAPI--S--------DC----RILL-KASSLEAKQLWVKRLREVIQ 59 (227)
Q Consensus 14 E~VegD~~kFeiW-~~r~~~--s--------~~----~~iL-QAss~evK~~Wvk~IreiL~ 59 (227)
-.+.+..-||+|| ..+.+. + .+ -|-+ +..|.+--..||+++.+-..
T Consensus 47 v~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~ 108 (200)
T KOG0092|consen 47 VTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQAS 108 (200)
T ss_pred EEeCCcEEEEEEEEcCCcccccccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCC
Confidence 3445556999999 444321 0 00 1222 46677788899999987644
No 91
>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain. Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=20.33 E-value=2e+02 Score=23.38 Aligned_cols=21 Identities=33% Similarity=0.684 Sum_probs=18.2
Q ss_pred eEEEEcCCHHHHHHHHHHHHH
Q psy12865 36 RILLKASSLEAKQLWVKRLRE 56 (227)
Q Consensus 36 ~~iLQAss~evK~~Wvk~Ire 56 (227)
+|.|=|-|.|..+.|++.|.+
T Consensus 101 ~~~lsaDt~eer~~W~~ain~ 121 (122)
T cd01263 101 RVMLSADTKEERQTWLSLLNS 121 (122)
T ss_pred EEEEecCCHHHHHHHHHHHhc
Confidence 466789999999999999875
Done!