RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12865
(227 letters)
>1nty_A Triple functional domain protein; DBL, pleckstrin, GEF, RHO,
GTPase, guanine-nucleotide releas factor,
phosphorylation, signaling protein; 1.70A {Homo sapiens}
SCOP: a.87.1.1 b.55.1.1 PDB: 2nz8_B 2kr9_A
Length = 311
Score = 75.6 bits (186), Expect = 2e-16
Identities = 41/59 (69%), Positives = 49/59 (83%)
Query: 2 KGRLMTSELGVTEHIEGDECKFAVWTGRAPISDCRILLKASSLEAKQLWVKRLREVIQE 60
K +L TSELGVTEH+EGD CKFA+W GR P SD +I+LKASS+E KQ W+K +REVIQE
Sbjct: 251 KSKLFTSELGVTEHVEGDPCKFALWVGRTPTSDNKIVLKASSIENKQDWIKHIREVIQE 309
Score = 32.8 bits (75), Expect = 0.074
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Query: 78 KLKSRSNQPNMEDEDNCDRGSLA-SYGSGNTTDSDK-----ASSLEAKQLWVKRLREVIQ 131
KS+ + ++ + + G T SD ASS+E KQ W+K +REVIQ
Sbjct: 249 LYKSKLFTSELGVTEHVEGDPCKFALWVGRTPTSDNKIVLKASSIENKQDWIKHIREVIQ 308
Query: 132 E 132
E
Sbjct: 309 E 309
Score = 32.1 bits (73), Expect = 0.12
Identities = 14/21 (66%), Positives = 17/21 (80%)
Query: 150 SASSLEAKQLWVKRLREVIQE 170
ASS+E KQ W+K +REVIQE
Sbjct: 289 KASSIENKQDWIKHIREVIQE 309
>2rgn_B RHOA/RAC/CDC42 exchange factor; heterotrimeric G-protein, small
molecular weight G-protein, complex, protein-protein
complex, rhogef, galphaq; HET: GDP; 3.50A {Homo sapiens}
Length = 354
Score = 69.1 bits (169), Expect = 4e-14
Identities = 19/83 (22%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 2 KGRLMTSELGVTEHIEGDECKFAVWTGRAPISDCRILLKASSLEAKQLWVKRLREVIQET 61
K + S LG+ +++GD C+FA+ + R +L+A+ Q W+K + ++++
Sbjct: 261 KNSIKVSCLGLEGNLQGDPCRFALTSRGPEGGIQRYVLQAADPAISQAWIKHVAQILES- 319
Query: 62 YFSSALPLAAPPKSPAKLKSRSN 84
L P + +S++N
Sbjct: 320 -QRDFLNALQSPIEYQRRESQTN 341
Score = 30.2 bits (68), Expect = 0.47
Identities = 8/45 (17%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 150 SASSLEAKQLWVKRLREVIQETYFSSALPLAAPPKSPAKLKSRSN 194
A+ Q W+K + ++++ L P + +S++N
Sbjct: 299 QAADPAISQAWIKHVAQILES--QRDFLNALQSPIEYQRRESQTN 341
Score = 29.8 bits (67), Expect = 0.68
Identities = 4/21 (19%), Positives = 12/21 (57%)
Query: 112 KASSLEAKQLWVKRLREVIQE 132
+A+ Q W+K + ++++
Sbjct: 299 QAADPAISQAWIKHVAQILES 319
>1kz7_A Guanine nucleotide exchange factor DBS; guanine nucleotide exchange
factor (GEF), small G-protein, signaling protein; 2.40A
{Mus musculus} SCOP: a.87.1.1 b.55.1.1 PDB: 1lb1_A
1kzg_A 1rj2_A
Length = 353
Score = 62.3 bits (151), Expect = 1e-11
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 2 KGRLMTSELGVTEHIEGDECKFAVWTGRAPISDCRILLKASSLEAKQLWVKRLREVIQE 60
K L + +G+TE+++GD KF +W + +++A + E K WV +R+V+
Sbjct: 271 KQSLNMTAVGITENVKGDTKKFEIWYNA---REEVYIIQAPTPEIKAAWVNAIRKVLTS 326
Score = 33.4 bits (76), Expect = 0.048
Identities = 11/58 (18%), Positives = 20/58 (34%), Gaps = 3/58 (5%)
Query: 78 KLKSRSNQPNMEDEDNCDRGSLA---SYGSGNTTDSDKASSLEAKQLWVKRLREVIQE 132
K N + +N + Y + +A + E K WV +R+V+
Sbjct: 269 SYKQSLNMTAVGITENVKGDTKKFEIWYNAREEVYIIQAPTPEIKAAWVNAIRKVLTS 326
Score = 30.3 bits (68), Expect = 0.43
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 150 SASSLEAKQLWVKRLREVIQE 170
A + E K WV +R+V+
Sbjct: 306 QAPTPEIKAAWVNAIRKVLTS 326
>1fho_A UNC-89; pleckstrin homology domain, electrostatics, muscle, signal
transduction, signaling protein; NMR {Caenorhabditis
elegans} SCOP: b.55.1.1
Length = 119
Score = 54.9 bits (132), Expect = 4e-10
Identities = 12/65 (18%), Positives = 25/65 (38%), Gaps = 4/65 (6%)
Query: 2 KGRLMTSELGVTEHIEGDECKFAVWTGRAPISDCRILLKA--SSLEAKQLWVKRLREVIQ 59
+ + + +H DE + + RI K +S ++ W++ + E Q
Sbjct: 54 YSSIRLDKYNIRQH-TTDEDTIVLQPQEPGLPSFRIKPKDFETSEYVRKAWLRDIAE-EQ 111
Query: 60 ETYFS 64
E Y +
Sbjct: 112 EKYAA 116
Score = 27.2 bits (60), Expect = 2.1
Identities = 6/27 (22%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 148 PASASSLEAKQLWVKRLREVIQETYFS 174
+S ++ W++ + E QE Y +
Sbjct: 91 KDFETSEYVRKAWLRDIAE-EQEKYAA 116
Score = 26.8 bits (59), Expect = 3.4
Identities = 7/27 (25%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 110 SDKASSLEAKQLWVKRLREVIQETYFS 136
D +S ++ W++ + E QE Y +
Sbjct: 91 KDFETSEYVRKAWLRDIAE-EQEKYAA 116
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 57.4 bits (138), Expect = 8e-10
Identities = 49/253 (19%), Positives = 81/253 (32%), Gaps = 88/253 (34%)
Query: 26 WTGRAPISDCRILLKASSLEA-----KQLWV--KRLREVIQETYFSSALP-----LAA-- 71
++ R P++ L SLE + +L+E F+ LP AA
Sbjct: 4 YSTR-PLT-----LSHGSLEHVLLVPTASFFIASQLQE-----QFNKILPEPTEGFAADD 52
Query: 72 PPKSPAKLKSR--------SNQPNMEDEDNCDRGSL----ASYGSGNTTDSDKASSLEAK 119
P +PA+L + + D L Y GN + A L+
Sbjct: 53 EPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQEN 112
Query: 120 QLWVKRLREVIQETYFSSALPLAAPPKSPASASSL-------EAK-------Q----LWV 161
+ + +E+I+ Y +A +A P S S+L A+ Q +
Sbjct: 113 DTTLVKTKELIK-NYI-TARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYF 170
Query: 162 KRLREVIQETY-------FSSA----LPLAAPPKSPAK-----------LKSRSNQPNME 199
+ LR+ + +TY + L K L++ SN P
Sbjct: 171 EELRD-LYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTP--- 226
Query: 200 DEDNCDRGSLASY 212
D+D L S
Sbjct: 227 DKDY-----LLSI 234
Score = 38.5 bits (89), Expect = 0.001
Identities = 33/159 (20%), Positives = 54/159 (33%), Gaps = 37/159 (23%)
Query: 39 LKASSLEAKQLWVKRLREVIQETY-FS-SALPLAAPPK-----SPAKLKS-RSNQPNMED 90
L +S A+ +W R ++TY FS + + P K K R N M
Sbjct: 1635 LYKTSKAAQDVW-NRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIF 1693
Query: 91 EDNCDRGSLASYGSGNTTDSDKASSLEAKQLWVKRLREVIQETYFSS-ALPLAAPPKSPA 149
E D G T K + + + + ++ T F+ AL A
Sbjct: 1694 ETIVD-------GKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPAL-TLM---EKA 1742
Query: 150 SASSLEAKQLWVKRLREVIQETYF---S----SALPLAA 181
+ L++K L + + F S +A LA+
Sbjct: 1743 AFEDLKSKGL-------IPADATFAGHSLGEYAA--LAS 1772
>1foe_A T-lymphoma invasion and metastasis inducing protein 1; DBL homology
domain, pleckstrin homology domain, GTPase, guanine
nucleotide exchange factor; 2.80A {Mus musculus} SCOP:
a.87.1.1 b.55.1.1
Length = 377
Score = 49.2 bits (117), Expect = 3e-07
Identities = 12/73 (16%), Positives = 27/73 (36%), Gaps = 6/73 (8%)
Query: 2 KGRLMTSELGVTEHIEGDECKFAVW------TGRAPISDCRILLKASSLEAKQLWVKRLR 55
+ + T L V D AV + + L SS E+++ ++K +
Sbjct: 303 RHMIPTEALQVRALPSADAEANAVCEIVHVKSESEGRPERVFHLCCSSPESRKDFLKSVH 362
Query: 56 EVIQETYFSSALP 68
++++ + L
Sbjct: 363 SILRDKHRRQLLK 375
Score = 36.9 bits (85), Expect = 0.004
Identities = 9/104 (8%), Positives = 33/104 (31%), Gaps = 12/104 (11%)
Query: 49 LWVKRLREVIQETYFSSALPLAAPPKSPAKLKSRSNQPNMEDEDNCDRGS-------LAS 101
+ V + ++ S P + + ++ + +
Sbjct: 272 VLVYKDGSKQKKKLVGSHRLSIYEEWDPFRFRHMIPTEALQVRALPSADAEANAVCEIVH 331
Query: 102 YGSGNTTDSDK-----ASSLEAKQLWVKRLREVIQETYFSSALP 140
S + ++ SS E+++ ++K + ++++ + L
Sbjct: 332 VKSESEGRPERVFHLCCSSPESRKDFLKSVHSILRDKHRRQLLK 375
Score = 33.1 bits (75), Expect = 0.067
Identities = 5/29 (17%), Positives = 16/29 (55%)
Query: 150 SASSLEAKQLWVKRLREVIQETYFSSALP 178
SS E+++ ++K + ++++ + L
Sbjct: 347 CCSSPESRKDFLKSVHSILRDKHRRQLLK 375
>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus
norvegicus} SCOP: a.87.1.1 b.55.1.1
Length = 402
Score = 49.1 bits (117), Expect = 3e-07
Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 5/64 (7%)
Query: 2 KGRLMTSELGVTEHIEGDECKFAVWTGRAPISDCR-----ILLKASSLEAKQLWVKRLRE 56
KGR+ + V + +G + F V A + L A LE K W++ RE
Sbjct: 301 KGRIDMDKYEVIDIEDGRDDDFNVSMKNAFKLHNKETEEVHLFFAKKLEEKIRWLRAFRE 360
Query: 57 VIQE 60
+
Sbjct: 361 ERKM 364
Score = 29.8 bits (67), Expect = 0.66
Identities = 19/124 (15%), Positives = 31/124 (25%), Gaps = 21/124 (16%)
Query: 26 WTGRAPISDCRILLKASSLEAKQLWVKRLREVIQETY---FSSALPLA---APPKSPAKL 79
W G + L+ + W+ + Q+ F + L +
Sbjct: 245 WEGDDILDRSSELIYTGEM----AWIYQPYGRNQQRVFFLFDHQMVLCKKDLIRRDILYY 300
Query: 80 KSRSNQPNMEDEDNCDRGSLA-----------SYGSGNTTDSDKASSLEAKQLWVKRLRE 128
K R + E D D A LE K W++ RE
Sbjct: 301 KGRIDMDKYEVIDIEDGRDDDFNVSMKNAFKLHNKETEEVHLFFAKKLEEKIRWLRAFRE 360
Query: 129 VIQE 132
+
Sbjct: 361 ERKM 364
Score = 27.5 bits (61), Expect = 3.7
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 150 SASSLEAKQLWVKRLREVIQE 170
A LE K W++ RE +
Sbjct: 344 FAKKLEEKIRWLRAFREERKM 364
>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene
regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1
PDB: 1pms_A 1awe_A
Length = 354
Score = 47.6 bits (113), Expect = 9e-07
Identities = 10/63 (15%), Positives = 24/63 (38%), Gaps = 2/63 (3%)
Query: 1 MKGRLMTSELGVTEHIEGDECKFAVWTGRAPISDCRILLKASSLEAKQLWVKRLREVIQE 60
+K + ++ + + + +E K A + ++ A S E K W+ L +
Sbjct: 293 LKEKFFMRKVQINDKDDTNEYKHAFEI--ILKDENSVIFSAKSAEEKNNWMAALISLQYR 350
Query: 61 TYF 63
+
Sbjct: 351 STL 353
Score = 29.5 bits (66), Expect = 0.82
Identities = 18/128 (14%), Positives = 34/128 (26%), Gaps = 19/128 (14%)
Query: 22 KFAVWTGRAPISDCRILLKASSLEAKQLWVKRLREVIQETYFSSAL----------PLAA 71
W G+ C + +L ++ K R + F + L
Sbjct: 231 NIDGWEGKDIGQCCNEFIMEGTL--TRVGAKHERHIF---LFDGLMICCKSNHGQPRLPG 285
Query: 72 PPKSPAKLKSRSNQPNMEDEDNCDRGSLAS----YGSGNTTDSDKASSLEAKQLWVKRLR 127
+ +LK + ++ D D + A S E K W+ L
Sbjct: 286 ASNAEYRLKEKFFMRKVQINDKDDTNEYKHAFEIILKDENSVIFSAKSAEEKNNWMAALI 345
Query: 128 EVIQETYF 135
+ +
Sbjct: 346 SLQYRSTL 353
Score = 29.1 bits (65), Expect = 1.2
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 150 SASSLEAKQLWVKRLREVIQETYF 173
SA S E K W+ L + +
Sbjct: 330 SAKSAEEKNNWMAALISLQYRSTL 353
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta
barrel, beta sandwich, signaling protei; 2.25A {Homo
sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Length = 466
Score = 43.0 bits (101), Expect = 3e-05
Identities = 16/71 (22%), Positives = 23/71 (32%), Gaps = 5/71 (7%)
Query: 1 MKGRLMTSELGVTEHIEGDECKFAVWTGRA-----PISDCRILLKASSLEAKQLWVKRLR 55
KGRL L V + +G + V A + LL E KQ W+K
Sbjct: 377 YKGRLDMDGLEVVDLEDGKDRDLHVSIKNAFRLHRGATGDSHLLCTRKPEQKQRWLKAFA 436
Query: 56 EVIQETYFSSA 66
++
Sbjct: 437 REREQVQLDQE 447
Score = 26.8 bits (59), Expect = 6.7
Identities = 5/27 (18%), Positives = 8/27 (29%)
Query: 150 SASSLEAKQLWVKRLREVIQETYFSSA 176
E KQ W+K ++
Sbjct: 421 CTRKPEQKQRWLKAFAREREQVQLDQE 447
Score = 26.8 bits (59), Expect = 7.1
Identities = 5/27 (18%), Positives = 8/27 (29%)
Query: 112 KASSLEAKQLWVKRLREVIQETYFSSA 138
E KQ W+K ++
Sbjct: 421 CTRKPEQKQRWLKAFAREREQVQLDQE 447
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain,
pleckst homology domain, C1 domain, guanine-nucleotide
releasing FA metal-binding; 2.73A {Homo sapiens} PDB:
2d86_A
Length = 587
Score = 42.3 bits (99), Expect = 7e-05
Identities = 12/64 (18%), Positives = 19/64 (29%), Gaps = 3/64 (4%)
Query: 2 KGRLMTSELGVTEHIEGDECKFAVWTGRAPISDCR---ILLKASSLEAKQLWVKRLREVI 58
K + V + GD I D L + E K+ W+++ I
Sbjct: 447 KDFVNLHSFQVRDDSSGDRDNKKWSHMFLLIEDQGAQGYELFFKTRELKKKWMEQFEMAI 506
Query: 59 QETY 62
Y
Sbjct: 507 SNIY 510
Score = 28.5 bits (63), Expect = 2.2
Identities = 5/23 (21%), Positives = 10/23 (43%)
Query: 112 KASSLEAKQLWVKRLREVIQETY 134
+ E K+ W+++ I Y
Sbjct: 488 FFKTRELKKKWMEQFEMAISNIY 510
Score = 28.5 bits (63), Expect = 2.3
Identities = 5/23 (21%), Positives = 10/23 (43%)
Query: 150 SASSLEAKQLWVKRLREVIQETY 172
+ E K+ W+++ I Y
Sbjct: 488 FFKTRELKKKWMEQFEMAISNIY 510
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding,
metal-binding, phosphoprotein, exchange factor, RAC,
GTPase, membrane domain; 1.85A {Mus musculus} PDB:
3bji_A 1f5x_A
Length = 406
Score = 41.4 bits (97), Expect = 1e-04
Identities = 10/67 (14%), Positives = 20/67 (29%), Gaps = 9/67 (13%)
Query: 2 KGRLMTSELGVTEHIEGD------ECKFAVWTGRAPISDCRILLKASSLEAKQLWVKRLR 55
K + V + G+ F + + L + E K+ W+++
Sbjct: 275 KASVNLHSFQVRDDSSGERDNKKWSHMFLLIEDQ---GAQGYELFFKTRELKKKWMEQFE 331
Query: 56 EVIQETY 62
I Y
Sbjct: 332 MAISNIY 338
Score = 28.3 bits (63), Expect = 2.0
Identities = 5/23 (21%), Positives = 10/23 (43%)
Query: 150 SASSLEAKQLWVKRLREVIQETY 172
+ E K+ W+++ I Y
Sbjct: 316 FFKTRELKKKWMEQFEMAISNIY 338
Score = 28.3 bits (63), Expect = 2.2
Identities = 5/22 (22%), Positives = 10/22 (45%)
Query: 113 ASSLEAKQLWVKRLREVIQETY 134
+ E K+ W+++ I Y
Sbjct: 317 FKTRELKKKWMEQFEMAISNIY 338
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 37.6 bits (86), Expect = 0.001
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 13/41 (31%)
Query: 117 EAKQLWVKRLREVIQETYFSSALPLAAPPKSPASA--SSLE 155
E + L K+L ++L L A +PA A +++E
Sbjct: 18 EKQAL--KKL---------QASLKLYADDSAPALAIKATME 47
Score = 33.4 bits (75), Expect = 0.025
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 11/33 (33%)
Query: 45 EAKQLWVKRLREVIQETYFSSALPLAAPPKSPA 77
E + L K+L ++L L A +PA
Sbjct: 18 EKQAL--KKL---------QASLKLYADDSAPA 39
Score = 33.4 bits (75), Expect = 0.025
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 11/33 (33%)
Query: 155 EAKQLWVKRLREVIQETYFSSALPLAAPPKSPA 187
E + L K+L ++L L A +PA
Sbjct: 18 EKQAL--KKL---------QASLKLYADDSAPA 39
>1v61_A RAC/CDC42 guanine nucleotide exchange factor (GEF) 6; pleckstrin
homology domain, structural genomics; NMR {Mus musculus}
SCOP: b.55.1.1
Length = 132
Score = 33.8 bits (77), Expect = 0.013
Identities = 8/59 (13%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 1 MKGRLMTSELGVTEHIEGDECKFAVWTGRAPISDCRILLKASSLEAKQLWVKRLREVIQ 59
+G++ + + V E + + + RI++ ++ + Q W+++L + +
Sbjct: 70 YQGKIPIAGMVVNRLDEIEGSDCM-FEITGSTVE-RIVVHCNNNQDFQEWMEQLNRLTK 126
Score = 29.5 bits (66), Expect = 0.37
Identities = 17/130 (13%), Positives = 43/130 (33%), Gaps = 23/130 (17%)
Query: 12 VTEHIEGDECKFAVWTGRAPISDCRILLKASSLEAKQLWVKRLREVIQETY---FSSALP 68
++E I+ W G + ++ ++ + E +E Y FSS L
Sbjct: 10 LSEPIQA-------WEGDDIKTLGNVIF-----MSQVVMQHGACEEKEERYFLLFSSVLI 57
Query: 69 LAAPPKSPAKLKSRSNQP-------NMEDEDNCDRGSLASYGSGNTTDSDKASSLEAKQL 121
+ + + + P +++ + GS ++ + Q
Sbjct: 58 MLSASPRMSGFMYQGKIPIAGMVVNRLDEIEG-SDCMFEITGSTVERIVVHCNNNQDFQE 116
Query: 122 WVKRLREVIQ 131
W+++L + +
Sbjct: 117 WMEQLNRLTK 126
Score = 25.7 bits (56), Expect = 9.7
Identities = 3/20 (15%), Positives = 11/20 (55%)
Query: 150 SASSLEAKQLWVKRLREVIQ 169
++ + Q W+++L + +
Sbjct: 107 HCNNNQDFQEWMEQLNRLTK 126
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural
genomics consortium, DH domain, SGC, L binding protein;
2.80A {Homo sapiens}
Length = 434
Score = 33.8 bits (77), Expect = 0.033
Identities = 17/89 (19%), Positives = 30/89 (33%), Gaps = 6/89 (6%)
Query: 1 MKGRLMTSELGVTE-HIEGDECKFAVWTGRAPISDCRILLKASSLEAKQLWVKRLREVIQ 59
+K L + + V+ +E + T S+ ++L ASS + W L +
Sbjct: 283 LKNTLAVANMKVSRPVMEKVPYALKIET-----SESCLMLSASSCAERDEWYGCLSRALP 337
Query: 60 ETYFSSALPLAAPPKSPAKLKSRSNQPNM 88
E Y + AL + S
Sbjct: 338 EDYKAQALAAFHHSVEIRERLGVSLGERP 366
Score = 27.3 bits (60), Expect = 4.4
Identities = 18/142 (12%), Positives = 40/142 (28%), Gaps = 12/142 (8%)
Query: 32 ISDCRILLKASSLEAKQLWVKRL-REVIQETY---FSSALPLAAPPKSPAKLKSRSNQP- 86
+ LL+ K+ + ++ + + + + L L P+ K + ++
Sbjct: 231 VRGQGDLLQPGREFLKEGTLMKVTGKNRRPRHLFLMNDVL-LYTYPQKDGKYRLKNTLAV 289
Query: 87 ---NMEDEDNCDRGSLASYGSGNTTDSDKASSLEAKQLWVKRLREVIQETY---FSSALP 140
+ + + ASS + W L + E Y +A
Sbjct: 290 ANMKVSRPVMEKVPYALKIETSESCLMLSASSCAERDEWYGCLSRALPEDYKAQALAAFH 349
Query: 141 LAAPPKSPASASSLEAKQLWVK 162
+ + S E V
Sbjct: 350 HSVEIRERLGVSLGERPPTLVP 371
Score = 26.5 bits (58), Expect = 7.9
Identities = 11/49 (22%), Positives = 15/49 (30%)
Query: 150 SASSLEAKQLWVKRLREVIQETYFSSALPLAAPPKSPAKLKSRSNQPNM 198
SASS + W L + E Y + AL + S
Sbjct: 318 SASSCAERDEWYGCLSRALPEDYKAQALAAFHHSVEIRERLGVSLGERP 366
>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology,
lipid transport; NMR {Homo sapiens}
Length = 94
Score = 30.4 bits (69), Expect = 0.11
Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 5/42 (11%)
Query: 17 EGDECKFAVWTGRAPISDCRILLKASSLEAKQLWVKRLREVI 58
+ DEC+F + D L+A + +Q W+ + +
Sbjct: 57 DFDECRFDISVN-----DSVWYLRAQDPDHRQQWIDAIEQHK 93
>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH
domain, lipid-binding, membrane, membrane protein;
1.90A {Homo sapiens} PDB: 2kcj_A
Length = 103
Score = 30.5 bits (69), Expect = 0.15
Identities = 6/43 (13%), Positives = 13/43 (30%), Gaps = 4/43 (9%)
Query: 17 EGDECKFAVWTGRAPISDCRILLKASSLEAKQLWVKRLREVIQ 59
D + + + +KA + +Q W+ L
Sbjct: 55 SADNTRMELIIP----GEQHFYMKAVNAAERQRWLVALGSSKA 93
Score = 25.5 bits (56), Expect = 8.3
Identities = 5/20 (25%), Positives = 8/20 (40%)
Query: 112 KASSLEAKQLWVKRLREVIQ 131
KA + +Q W+ L
Sbjct: 74 KAVNAAERQRWLVALGSSKA 93
>2d9x_A Oxysterol binding protein-related protein 11; PH domain,
OSBP-related protein 11, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 120
Score = 30.2 bits (68), Expect = 0.20
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 4/42 (9%)
Query: 19 DECKFAVWTGRAPISDCRILLKASSLEAKQLWVKRLREVIQE 60
D F V S + L+A+ + +Q WV RL+ Q
Sbjct: 68 DSHTFTVNAA----SGEQYKLRATDAKERQHWVSRLQICTQH 105
Score = 26.4 bits (58), Expect = 5.2
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 112 KASSLEAKQLWVKRLREVIQE 132
+A+ + +Q WV RL+ Q
Sbjct: 85 RATDAKERQHWVSRLQICTQH 105
>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}
Length = 228
Score = 30.3 bits (68), Expect = 0.41
Identities = 18/92 (19%), Positives = 29/92 (31%), Gaps = 2/92 (2%)
Query: 39 LKASSLEAKQLWVKRLREVIQETYFS--SALPLAAPPKSPAKLKSRSNQPNMEDEDNCDR 96
L A S E W L +V T A P++ ++ D+ DR
Sbjct: 135 LIAESPEDASQWFSVLSQVHSSTDQEIREMHDEQANPQNAVGTLDVGLIDSVCASDSPDR 194
Query: 97 GSLASYGSGNTTDSDKASSLEAKQLWVKRLRE 128
+ + N A + E W+ L+
Sbjct: 195 PNSFVIITANRVLHCNADTPEEMHHWITLLQR 226
>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 119
Score = 28.9 bits (65), Expect = 0.60
Identities = 14/72 (19%), Positives = 27/72 (37%), Gaps = 7/72 (9%)
Query: 2 KGRLMTSELGVTEHIEGDECKFAVWTGRAPISDCRI-LLKASSLEAKQLWVKRLREVIQE 60
+ S + +E F + T R+ LKA++ +A W+++L+ E
Sbjct: 52 LDSIDLSSAVFDCKADAEEGIFEIKTPS------RVITLKAATKQAMLYWLQQLQMKRWE 105
Query: 61 TYFSSALPLAAP 72
+ S P
Sbjct: 106 FHNSPPAPSGPS 117
Score = 25.5 bits (56), Expect = 8.1
Identities = 7/33 (21%), Positives = 15/33 (45%)
Query: 150 SASSLEAKQLWVKRLREVIQETYFSSALPLAAP 182
A++ +A W+++L+ E + S P
Sbjct: 85 KAATKQAMLYWLQQLQMKRWEFHNSPPAPSGPS 117
Score = 25.5 bits (56), Expect = 9.1
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 112 KASSLEAKQLWVKRLREVIQETYFSSALPLAAP 144
KA++ +A W+++L+ E + S P
Sbjct: 85 KAATKQAMLYWLQQLQMKRWEFHNSPPAPSGPS 117
>1wi1_A Calcium-dependent activator protein for secretion, CAPS; PH domain,
PIP2 binding site, structural genomics; NMR {Homo
sapiens} SCOP: b.55.1.1
Length = 126
Score = 28.4 bits (63), Expect = 1.1
Identities = 6/38 (15%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 38 LLKASSLEAKQLWVKRLREVIQETYFSSALPLAAPPKS 75
+ + + + LWV+ + +++ P + P S
Sbjct: 89 IFASDDEQDRILWVQAMYRATGQSH-KPVPPTQSGPSS 125
Score = 26.8 bits (59), Expect = 3.0
Identities = 6/40 (15%), Positives = 15/40 (37%), Gaps = 6/40 (15%)
Query: 113 ASSLEAKQLWVKRLREVIQETYFSSALPLAAPPKSPASAS 152
+ + + LWV+ + +++ PP +S
Sbjct: 92 SDDEQDRILWVQAMYRATGQSH------KPVPPTQSGPSS 125
Score = 26.8 bits (59), Expect = 3.5
Identities = 6/36 (16%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 150 SASSLEAKQLWVKRLREVIQETYFSSALPLAAPPKS 185
++ + + LWV+ + +++ P + P S
Sbjct: 91 ASDDEQDRILWVQAMYRATGQSH-KPVPPTQSGPSS 125
>2y7b_A Actin-binding protein anillin; cell cycle; 1.90A {Homo sapiens}
Length = 134
Score = 28.5 bits (63), Expect = 1.2
Identities = 14/58 (24%), Positives = 25/58 (43%)
Query: 2 KGRLMTSELGVTEHIEGDECKFAVWTGRAPISDCRILLKASSLEAKQLWVKRLREVIQ 59
R T EL D+ + V R + + L A + E + LW+++L +V+
Sbjct: 71 CARRNTFELITVRPQREDDRETLVSQCRDTLCVTKNWLSADTKEERDLWMQKLNQVLV 128
>3pp2_A RHO GTPase-activating protein 27; PH domain, GTPase activator,
pleckstrin homology domain, STR genomics consortium,
SGC, hydrolase activator; HET: CIT; 1.42A {Homo sapiens}
Length = 124
Score = 27.9 bits (62), Expect = 1.6
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 38 LLKASSLEAKQLWVKRLREVIQE 60
L++ S W K + + IQE
Sbjct: 102 LIQHDSEAIISTWHKAIAQGIQE 124
Score = 25.6 bits (56), Expect = 9.5
Identities = 6/21 (28%), Positives = 8/21 (38%)
Query: 150 SASSLEAKQLWVKRLREVIQE 170
S W K + + IQE
Sbjct: 104 QHDSEAIISTWHKAIAQGIQE 124
>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: b.55.1.1
Length = 117
Score = 27.4 bits (61), Expect = 2.1
Identities = 5/21 (23%), Positives = 10/21 (47%)
Query: 39 LKASSLEAKQLWVKRLREVIQ 59
A + + Q WV R++ +
Sbjct: 91 FCAQDVPSAQQWVDRIQSCLS 111
Score = 26.2 bits (58), Expect = 5.3
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 150 SASSLEAKQLWVKRLREVIQ 169
A + + Q WV R++ +
Sbjct: 92 CAQDVPSAQQWVDRIQSCLS 111
Score = 25.5 bits (56), Expect = 9.0
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 112 KASSLEAKQLWVKRLREVIQ 131
A + + Q WV R++ +
Sbjct: 92 CAQDVPSAQQWVDRIQSCLS 111
>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 115
Score = 27.0 bits (60), Expect = 2.4
Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 7/44 (15%)
Query: 17 EGDECKFAVWTGRAPISDCRI-LLKASSLEAKQLWVKRLREVIQ 59
+G +C F V + + AS + KQ W++ + I
Sbjct: 66 DGKKCLFLVKCFD------KTFEISASDKKKKQEWIQAIHSTIH 103
>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling
protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB:
3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A
Length = 120
Score = 27.3 bits (60), Expect = 2.6
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 38 LLKASSLEAKQLWVKRLREVIQET 61
+ KA S E+ W L+ + +
Sbjct: 97 VFKADSYESMMSWFDNLKILTSTS 120
Score = 25.7 bits (56), Expect = 6.6
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 112 KASSLEAKQLWVKRLREVIQET 133
KA S E+ W L+ + +
Sbjct: 99 KADSYESMMSWFDNLKILTSTS 120
>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus}
SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A*
1u29_A* 1u27_A*
Length = 127
Score = 26.9 bits (59), Expect = 2.9
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 38 LLKASSLEAKQLWVKRLREVIQ 59
+ A S E K+ W+K ++ I
Sbjct: 99 RISAPSPEEKEEWMKSIKASIS 120
Score = 25.7 bits (56), Expect = 7.2
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 150 SASSLEAKQLWVKRLREVIQ 169
SA S E K+ W+K ++ I
Sbjct: 101 SAPSPEEKEEWMKSIKASIS 120
>2rov_A RHO-associated protein kinase 2; ATP-binding, coiled coil,
cytoplasm, membrane, metal-binding, nucleotide-binding,
phorbol-ester binding; NMR {Rattus norvegicus}
Length = 117
Score = 26.9 bits (59), Expect = 3.0
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 36 RILLKASSLEAKQLWVKRLREVIQ 59
+LL A+S E +Q WV RL + I
Sbjct: 92 NLLLLANSTEEQQKWVSRLVKKIP 115
>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH
domains (ARAP) 2, PH domain, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Length = 115
Score = 26.6 bits (59), Expect = 3.2
Identities = 9/54 (16%), Positives = 19/54 (35%), Gaps = 5/54 (9%)
Query: 19 DECKFAVWTGRAPISDCRILLKASSLEAKQLWVKRLREVIQETYFSSALPLAAP 72
+ KF V T + + + E + W+ L ++ +S + P
Sbjct: 64 GDNKFEVVT-----TQRTFVFRVEKEEERNDWISILLNALKSQSLTSQSQASGP 112
>1xcg_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; X-RAY
crystallography, regulation of RHOA GTPase, protein
complex; 2.50A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1
PDB: 3kz1_A*
Length = 368
Score = 27.9 bits (62), Expect = 3.3
Identities = 8/48 (16%), Positives = 17/48 (35%)
Query: 12 VTEHIEGDECKFAVWTGRAPISDCRILLKASSLEAKQLWVKRLREVIQ 59
+ + D+ F + L A + K W++ L E ++
Sbjct: 319 LIRSVATDKRAFFIICTSKLGPPQIYELVALTSSDKNTWMELLEEAVR 366
>1txd_A RHO guanine nucleotide exchange factor 12; helical bundle (DH),
beta sandwich (PH), signaling protein; 2.13A {Homo
sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1x86_A
Length = 385
Score = 27.5 bits (61), Expect = 3.4
Identities = 4/24 (16%), Positives = 9/24 (37%)
Query: 37 ILLKASSLEAKQLWVKRLREVIQE 60
L A ++ K +W + +
Sbjct: 347 YELVAQTVSEKTVWQDLICRMAAS 370
>1ztm_A Fusion glycoprotein; fusion protein, 6-helix bundle,trimer,
post-fusion, viral PR; HET: NAG; 3.05A {Human
parainfluenza virus 3}
Length = 490
Score = 27.7 bits (61), Expect = 3.7
Identities = 19/100 (19%), Positives = 39/100 (39%), Gaps = 14/100 (14%)
Query: 86 PNMEDEDNCDRGSLASYGSGNTT------------DSDKASSLEAKQLWVKRLREVIQET 133
P +ED ++C + Y S+ E+ + +
Sbjct: 37 PKIEDSNSCGDQQIKQYKRLLDRLIIPLYDGLRLQKDVIVSNQESNENTDPSTKRFFGGV 96
Query: 134 YFSSALPLAAPPKSPASASSLEAKQLW--VKRLREVIQET 171
+ AL +A + A+ + +EAKQ +++L+E I++T
Sbjct: 97 IGTIALGVATSAQITAAVALVEAKQARSDIEKLKEAIRDT 136
Score = 26.6 bits (58), Expect = 9.4
Identities = 5/17 (29%), Positives = 9/17 (52%)
Query: 196 PNMEDEDNCDRGSLASY 212
P +ED ++C + Y
Sbjct: 37 PKIEDSNSCGDQQIKQY 53
>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex,
pleckstrin homology domain, ligand binding protein; HET:
I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A*
Length = 129
Score = 26.4 bits (58), Expect = 4.3
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 38 LLKASSLEAKQLWVKRLREVIQE 60
LL++ + W + LR VI+
Sbjct: 103 LLQSDHETELRAWHRALRTVIER 125
>3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA
complex, pdzrhogef, guanine nucleotide exchange F RHOA,
signaling protein; 2.84A {Homo sapiens}
Length = 418
Score = 27.2 bits (60), Expect = 4.4
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 38 LLKASSLEAKQLWVKRLREVIQE 60
L A + K W++ L E ++
Sbjct: 387 ELVALTSSDKNTWMELLEEAVRN 409
>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid
binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP:
b.55.1.1 PDB: 2i5c_A* 1zm0_A
Length = 109
Score = 26.2 bits (58), Expect = 4.7
Identities = 4/22 (18%), Positives = 13/22 (59%)
Query: 38 LLKASSLEAKQLWVKRLREVIQ 59
L+A++ + + W+K ++ +
Sbjct: 88 FLQAATPKERTEWIKAIQMASR 109
Score = 25.8 bits (57), Expect = 6.1
Identities = 3/20 (15%), Positives = 11/20 (55%)
Query: 150 SASSLEAKQLWVKRLREVIQ 169
A++ + + W+K ++ +
Sbjct: 90 QAATPKERTEWIKAIQMASR 109
>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction;
1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A*
Length = 123
Score = 26.3 bits (58), Expect = 4.9
Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 5/41 (12%)
Query: 38 LLKASSLEAKQLWVKRLREVIQETYFSSALPLAAPPKSPAK 78
+L A +LE + W++ L + P+SPA+
Sbjct: 88 VLAADTLEDLRGWLRALGRASRAEGDDY-----GQPRSPAR 123
>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA
GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo
sapiens} PDB: 3odo_A
Length = 377
Score = 27.2 bits (60), Expect = 5.0
Identities = 4/24 (16%), Positives = 9/24 (37%)
Query: 37 ILLKASSLEAKQLWVKRLREVIQE 60
L A ++ ++ W + E
Sbjct: 349 YELVAQTVSERKNWCALITETAGS 372
>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide,
pleckst homology domain, guanine-nucleotide releasing
factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus
musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A*
Length = 347
Score = 26.9 bits (59), Expect = 5.8
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 38 LLKASSLEAKQLWVKRLREVIQETYFSSAL 67
+ A S E K+ W+K ++ I F L
Sbjct: 307 RISAPSPEEKEEWMKSIKASISRDPFYDML 336
Score = 26.5 bits (58), Expect = 7.9
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 150 SASSLEAKQLWVKRLREVIQETYFSSAL 177
SA S E K+ W+K ++ I F L
Sbjct: 309 SAPSPEEKEEWMKSIKASISRDPFYDML 336
>2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain,
alternative splicing, cytoplasm, guanine- nucleotide
releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A
Length = 346
Score = 27.0 bits (60), Expect = 5.8
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 37 ILLKASSLEAKQLWVKRLREVIQ 59
L+A+ KQ W+ +R+ +
Sbjct: 324 HSLQANDTFNKQQWLNCIRQAKE 346
>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain,
phosphatidylinositol binding, structural genomics; NMR
{Homo sapiens} SCOP: b.55.1.1
Length = 118
Score = 25.8 bits (57), Expect = 7.5
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 38 LLKASSLEAKQLWVKRLREVIQ 59
+L ASS + WVK LR V
Sbjct: 91 VLMASSQAEMEEWVKFLRRVAG 112
>1u5e_A SRC-associated adaptor protein; novel dimerization domain, PH
domain, signaling protein; 2.60A {Mus musculus} SCOP:
b.55.1.1 PDB: 2otx_A
Length = 211
Score = 26.2 bits (57), Expect = 7.6
Identities = 6/23 (26%), Positives = 15/23 (65%)
Query: 38 LLKASSLEAKQLWVKRLREVIQE 60
A+S + + WV++L+ ++Q+
Sbjct: 187 QFTAASPKDAEEWVQQLKFILQD 209
Score = 25.9 bits (56), Expect = 9.7
Identities = 6/21 (28%), Positives = 16/21 (76%)
Query: 150 SASSLEAKQLWVKRLREVIQE 170
+A+S + + WV++L+ ++Q+
Sbjct: 189 TAASPKDAEEWVQQLKFILQD 209
>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA
GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo
sapiens} PDB: 3odx_A
Length = 536
Score = 26.6 bits (58), Expect = 7.9
Identities = 4/24 (16%), Positives = 9/24 (37%)
Query: 37 ILLKASSLEAKQLWVKRLREVIQE 60
L A ++ ++ W + E
Sbjct: 502 YELVAQTVSERKNWCALITETAGS 525
>2dtc_A RAL guanine nucleotide exchange factor ralgps1A; PH domain, protein
binding, structural genomics, NPPSFA; 1.70A {Mus
musculus}
Length = 126
Score = 25.8 bits (56), Expect = 8.9
Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 10/44 (22%)
Query: 38 LLKASSLEAKQLWVKRLREVIQETYFSSALPLAAPPKSPAKLKS 81
+ S LW K L + + ++ P+ PA L S
Sbjct: 91 KFQTGSRFHAILWHKHLDDACK----------SSRPQVPANLMS 124
>1zc3_B Exocyst complex protein EXO84; exocytosis, small GTPase,
GTP-binding protein,, signaling protein; HET: GNP; 2.00A
{Rattus norvegicus} SCOP: b.55.1.1 PDB: 1zc4_B*
Length = 113
Score = 25.2 bits (55), Expect = 9.8
Identities = 5/24 (20%), Positives = 13/24 (54%)
Query: 37 ILLKASSLEAKQLWVKRLREVIQE 60
+ +A + + K+ W++ L E +
Sbjct: 85 RIFQAENAKIKREWLEVLEETKRA 108
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.310 0.125 0.360
Gapped
Lambda K H
0.267 0.0554 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,152,724
Number of extensions: 166640
Number of successful extensions: 413
Number of sequences better than 10.0: 1
Number of HSP's gapped: 402
Number of HSP's successfully gapped: 127
Length of query: 227
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 137
Effective length of database: 4,188,903
Effective search space: 573879711
Effective search space used: 573879711
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.4 bits)