Query psy12866
Match_columns 106
No_of_seqs 131 out of 773
Neff 5.6
Searched_HMMs 46136
Date Fri Aug 16 21:46:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12866.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12866hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00251 fatty acid elongase; 99.7 7.6E-17 1.6E-21 126.3 4.5 68 26-95 10-83 (272)
2 PF01151 ELO: GNS1/SUR4 family 99.6 2.5E-15 5.4E-20 115.4 7.0 60 36-96 1-60 (250)
3 KOG3071|consensus 99.5 3E-14 6.6E-19 112.1 7.9 71 26-98 16-86 (274)
4 KOG3072|consensus 99.2 2.3E-11 5E-16 96.1 6.1 62 32-95 31-92 (282)
5 COG5548 Small integral membran 71.6 3 6.5E-05 28.8 1.8 19 51-70 64-82 (105)
6 PF06210 DUF1003: Protein of u 60.3 53 0.0011 22.6 6.6 54 38-94 1-54 (108)
7 PF15048 OSTbeta: Organic solu 36.3 92 0.002 22.3 4.5 26 44-70 41-66 (125)
8 COG4420 Predicted membrane pro 32.9 2E+02 0.0043 22.0 6.1 54 38-94 55-108 (191)
9 PRK09173 F0F1 ATP synthase sub 28.6 35 0.00075 24.1 1.4 30 39-68 3-36 (159)
10 PF11694 DUF3290: Protein of u 26.9 1.5E+02 0.0032 21.5 4.4 45 40-85 16-60 (149)
11 PF14752 RBP_receptor: Retinol 26.2 1E+02 0.0022 27.4 4.0 41 59-101 462-503 (617)
12 PF06610 DUF1144: Protein of u 23.2 1.4E+02 0.003 21.8 3.7 34 63-97 1-36 (143)
13 PF04789 DUF621: Protein of un 22.2 1.8E+02 0.0039 23.7 4.5 47 43-91 198-249 (305)
14 MTH00169 ATP8 ATP synthase F0 21.9 80 0.0017 19.9 2.0 25 41-65 14-38 (67)
15 PF13221 DUF4029: Protein of u 21.8 1.5E+02 0.0033 19.8 3.3 23 74-96 61-83 (96)
16 PF06454 DUF1084: Protein of u 21.6 3.8E+02 0.0083 21.0 6.2 53 41-98 133-185 (281)
17 PF14147 Spore_YhaL: Sporulati 20.3 1.5E+02 0.0032 18.1 2.8 15 81-95 10-24 (52)
No 1
>PTZ00251 fatty acid elongase; Provisional
Probab=99.66 E-value=7.6e-17 Score=126.30 Aligned_cols=68 Identities=13% Similarity=0.297 Sum_probs=62.0
Q ss_pred hhcC-CCcCccccccchhHHHHHHHHHHhHhhhcchhhhcc----CCCcc-chhHHHHHHHHHHHHHHHHHHHHHH
Q psy12866 26 KDAD-RRTDGYLFLNSLNFQIGTSLVYLFIVLYAGPRFMAN----RKPFK-LEATIRIYNVFQILSCANIIYQTGS 95 (106)
Q Consensus 26 ~~~d-~r~~~wplm~sp~~~i~i~~~Yl~~V~~~Gp~~Mk~----Rkpf~-Lk~~l~~yNl~~v~~S~~~~~~~~~ 95 (106)
...| +|+++| +++||++++.++++|+++|+ .||++||+ ||||+ ||+++.+||++|+++|++++++++.
T Consensus 10 ~~f~~~~~~~w-l~~~~~~~~~i~~~Yl~~V~-~Gp~~M~~~~~~Rkp~~~Lr~~l~~yNl~l~v~s~~~~~~~~~ 83 (272)
T PTZ00251 10 NHYDGHAVQKW-LASNVDICVYIAAAYLTFVF-KGPQLVDAIFHGNPPVPLIKKCWALWNIGLSVFSMYGVYRVVP 83 (272)
T ss_pred ccCCcHHHHHH-HHhCCHHHHHHHHHHHHHHH-HHHHHHhhccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444 678999 78999999999999999999 99999975 99999 9999999999999999999998863
No 2
>PF01151 ELO: GNS1/SUR4 family; InterPro: IPR002076 This group of eukaryotic integral membrane proteins are evolutionary related, but exact function has not yet clearly been established. The proteins have from 290 to 435 amino acid residues. Structurally, they seem to be formed of three sections: a N-terminal region with two transmembrane domains, a central hydrophilic loop and a C-terminal region that contains from one to three transmembrane domains. Members of this family are involved in long chain fatty acid elongation systems that produce the 26-carbon precursors for ceramide and sphingolipid synthesis []. Predicted to be integral membrane proteins, in eukaryotes they are probably located on the endoplasmic reticulum. Yeast ELO3 (P40319 from SWISSPROT) affects plasma membrane H+-ATPase activity, and may act on a glucose-signalling pathway that controls the expression of several genes that are transcriptionally regulated by glucose such as PMA1 []. ; GO: 0016021 integral to membrane
Probab=99.59 E-value=2.5e-15 Score=115.41 Aligned_cols=60 Identities=38% Similarity=0.687 Sum_probs=56.3
Q ss_pred ccccchhHHHHHHHHHHhHhhhcchhhhccCCCccchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy12866 36 LFLNSLNFQIGTSLVYLFIVLYAGPRFMANRKPFKLEATIRIYNVFQILSCANIIYQTGSA 96 (106)
Q Consensus 36 plm~sp~~~i~i~~~Yl~~V~~~Gp~~Mk~Rkpf~Lk~~l~~yNl~~v~~S~~~~~~~~~~ 96 (106)
.|++||++++.++++|+++|+ .||++||+|||++||.++.+||++|+++|++++++++..
T Consensus 1 Wl~~~~~~~~~~~~~Yl~~V~-~g~~~m~~Rkp~~Lk~~~~~~N~~l~~~S~~~~~~~~~~ 60 (250)
T PF01151_consen 1 WLMSNPWFPILIVVLYLLFVF-LGPRFMKNRKPFNLKTLIIVYNLFLVVFSAYMFYGILPA 60 (250)
T ss_pred CcccCCHHHHHHHHHHHHHHH-HHHHHHhhCCCcccChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 046899999999999999997 999999999999999999999999999999999999844
No 3
>KOG3071|consensus
Probab=99.53 E-value=3e-14 Score=112.07 Aligned_cols=71 Identities=34% Similarity=0.434 Sum_probs=62.0
Q ss_pred hhcCCCcCccccccchhHHHHHHHHHHhHhhhcchhhhccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12866 26 KDADRRTDGYLFLNSLNFQIGTSLVYLFIVLYAGPRFMANRKPFKLEATIRIYNVFQILSCANIIYQTGSAFF 98 (106)
Q Consensus 26 ~~~d~r~~~wplm~sp~~~i~i~~~Yl~~V~~~Gp~~Mk~Rkpf~Lk~~l~~yNl~~v~~S~~~~~~~~~~~~ 98 (106)
...|++++ ||++++++++..++.+|+ +|.+.||++|+||||++||+++.+||++|++.|++++.+.....+
T Consensus 16 ~~~~~~v~-~~~l~s~~~~~~il~~yl-~v~~~G~~~m~nrkp~~l~~~~~vyN~~~vl~s~~i~~~~~~~~~ 86 (274)
T KOG3071|consen 16 WSPDDRVR-SPLLSSPWPLLSILLAYL-FVLKLGPKLMRNRKPLKLRGLSQVYNLGQVLLSAAIFLEGELWRW 86 (274)
T ss_pred CCCCcccc-chhccCcHHHHHHHHHHH-HHHHhcHhhhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44577666 899999999999999999 666699999999999999999999999999999997776655544
No 4
>KOG3072|consensus
Probab=99.21 E-value=2.3e-11 Score=96.07 Aligned_cols=62 Identities=24% Similarity=0.414 Sum_probs=52.8
Q ss_pred cCccccccchhHHHHHHHHHHhHhhhcchhhhccCCCccchhHHHHHHHHHHHHHHHHHHHHHH
Q psy12866 32 TDGYLFLNSLNFQIGTSLVYLFIVLYAGPRFMANRKPFKLEATIRIYNVFQILSCANIIYQTGS 95 (106)
Q Consensus 32 ~~~wplm~sp~~~i~i~~~Yl~~V~~~Gp~~Mk~Rkpf~Lk~~l~~yNl~~v~~S~~~~~~~~~ 95 (106)
+..|. .+.+...+.++++|+++|+ +|+++|+|||||+|++++.+||.++++||+..+.++.-
T Consensus 31 ~~~~~-~~~~~~si~is~~Y~v~if-~~q~fM~~RkpF~L~~pL~lWn~~La~FSi~g~lr~~~ 92 (282)
T KOG3072|consen 31 VVKFF-QEHWPLSIHISIAYLVLIF-GGQNFMKNRKPFQLTKPLNLWNFCLAAFSILGALRTIP 92 (282)
T ss_pred HHHHH-HhccchhHHHHHHHHHHHH-HHHHHHhcCCCCCCcChHHHHHHHHHHHHHHHHHHHHH
Confidence 34442 3444567999999999999 99999999999999999999999999999998877543
No 5
>COG5548 Small integral membrane protein [Function unknown]
Probab=71.61 E-value=3 Score=28.75 Aligned_cols=19 Identities=26% Similarity=0.462 Sum_probs=15.0
Q ss_pred HHhHhhhcchhhhccCCCcc
Q psy12866 51 YLFIVLYAGPRFMANRKPFK 70 (106)
Q Consensus 51 Yl~~V~~~Gp~~Mk~Rkpf~ 70 (106)
=+++++ +++|+|+.|||.-
T Consensus 64 ~~Ll~~-~~~R~~~sRKpvP 82 (105)
T COG5548 64 AALLVF-FALRLVRSRKPVP 82 (105)
T ss_pred HHHHHh-cchhccccCCCcc
Confidence 345555 8999999999975
No 6
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=60.32 E-value=53 Score=22.55 Aligned_cols=54 Identities=17% Similarity=0.034 Sum_probs=33.4
Q ss_pred ccchhHHHHHHHHHHhHhhhcchhhhccCCCccchhHHHHHHHHHHHHHHHHHHHHH
Q psy12866 38 LNSLNFQIGTSLVYLFIVLYAGPRFMANRKPFKLEATIRIYNVFQILSCANIIYQTG 94 (106)
Q Consensus 38 m~sp~~~i~i~~~Yl~~V~~~Gp~~Mk~Rkpf~Lk~~l~~yNl~~v~~S~~~~~~~~ 94 (106)
++|+...+..+++.++.+. ...+.-.+++|+--. ..+-|+++++.++|.+--++
T Consensus 1 ~GS~~Fi~~~~~~~~~Wi~--~N~~~~~~~~fDpyP-FilLnl~lS~~Aa~~ap~Il 54 (108)
T PF06210_consen 1 GGSWTFIIIFTVFLAVWIL--LNILAPPRPAFDPYP-FILLNLVLSLEAAYQAPLIL 54 (108)
T ss_pred CCcHHHHHHHHHHHHHHHH--HHhhccccCCCCCcc-HHHHHHHHHHHHHHHHHHHH
Confidence 3666666666655555543 333343445666543 77889999988888665544
No 7
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=36.33 E-value=92 Score=22.26 Aligned_cols=26 Identities=19% Similarity=0.230 Sum_probs=17.4
Q ss_pred HHHHHHHHHhHhhhcchhhhccCCCcc
Q psy12866 44 QIGTSLVYLFIVLYAGPRFMANRKPFK 70 (106)
Q Consensus 44 ~i~i~~~Yl~~V~~~Gp~~Mk~Rkpf~ 70 (106)
.+..+++-+-|++ .|...|+||+.=.
T Consensus 41 ~Ls~vvlvi~~~L-Lgrsi~ANRnrK~ 66 (125)
T PF15048_consen 41 ALSFVVLVISFFL-LGRSIQANRNRKM 66 (125)
T ss_pred HHHHHHHHHHHHH-HHHHhHhcccccc
Confidence 4444555555665 8999999987643
No 8
>COG4420 Predicted membrane protein [Function unknown]
Probab=32.93 E-value=2e+02 Score=21.98 Aligned_cols=54 Identities=13% Similarity=0.042 Sum_probs=37.2
Q ss_pred ccchhHHHHHHHHHHhHhhhcchhhhccCCCccchhHHHHHHHHHHHHHHHHHHHHH
Q psy12866 38 LNSLNFQIGTSLVYLFIVLYAGPRFMANRKPFKLEATIRIYNVFQILSCANIIYQTG 94 (106)
Q Consensus 38 m~sp~~~i~i~~~Yl~~V~~~Gp~~Mk~Rkpf~Lk~~l~~yNl~~v~~S~~~~~~~~ 94 (106)
.+||..++..+++.++.|+ +--+-+-..||+- ++.++-|+++++.++|-+--++
T Consensus 55 ~Gsw~fil~~~~~ll~Wi~--lNl~~~~~~~wDp-yPFi~LnLllS~~AaiqAp~Il 108 (191)
T COG4420 55 GGSWAFILTFTLLLLLWIV--LNLFLVPGLAWDP-YPFILLNLLLSTLAAIQAPLIL 108 (191)
T ss_pred cCChHHHHHHHHHHHHHHH--HHHhhhcCCcCCC-ccHHHHHHHHHHHHHHHHhHHH
Confidence 4788888777777777664 5555555678875 4556679998888877554433
No 9
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=28.59 E-value=35 Score=24.14 Aligned_cols=30 Identities=17% Similarity=0.217 Sum_probs=18.4
Q ss_pred cchhHHHHHHHHHHhHhhhcchh----hhccCCC
Q psy12866 39 NSLNFQIGTSLVYLFIVLYAGPR----FMANRKP 68 (106)
Q Consensus 39 ~sp~~~i~i~~~Yl~~V~~~Gp~----~Mk~Rkp 68 (106)
+..|..+.++++|+++.++.+|+ +|++|+-
T Consensus 3 ~~~w~~i~f~i~l~~l~~~~~~~pi~~~l~~R~~ 36 (159)
T PRK09173 3 ATFWAFVGLVLFLALVVYLKVPGMIARSLDARAD 36 (159)
T ss_pred chHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34566677777777766643543 4767654
No 10
>PF11694 DUF3290: Protein of unknown function (DUF3290); InterPro: IPR021707 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=26.93 E-value=1.5e+02 Score=21.47 Aligned_cols=45 Identities=16% Similarity=0.101 Sum_probs=30.4
Q ss_pred chhHHHHHHHHHHhHhhhcchhhhccCCCccchhHHHHHHHHHHHH
Q psy12866 40 SLNFQIGTSLVYLFIVLYAGPRFMANRKPFKLEATIRIYNVFQILS 85 (106)
Q Consensus 40 sp~~~i~i~~~Yl~~V~~~Gp~~Mk~Rkpf~Lk~~l~~yNl~~v~~ 85 (106)
+.+..+.++++=+++++ .+-++||+|.-=+-|-+.++==+++.++
T Consensus 16 ~~~~~~~i~~ll~~l~~-~~~~Y~r~r~~tKyRDL~II~~L~ll~l 60 (149)
T PF11694_consen 16 DYLRYILIIILLLVLIF-FFIKYLRNRLDTKYRDLSIIALLLLLLL 60 (149)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHhcCcchhhhHHHHHHHHHHHH
Confidence 33445555555666665 7889999999988888876644444443
No 11
>PF14752 RBP_receptor: Retinol binding protein receptor
Probab=26.24 E-value=1e+02 Score=27.36 Aligned_cols=41 Identities=20% Similarity=0.297 Sum_probs=26.3
Q ss_pred chhhhccCCCcc-chhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy12866 59 GPRFMANRKPFK-LEATIRIYNVFQILSCANIIYQTGSAFFVSL 101 (106)
Q Consensus 59 Gp~~Mk~Rkpf~-Lk~~l~~yNl~~v~~S~~~~~~~~~~~~~~~ 101 (106)
|+.-.+||+.|. ...++..||++.-+++.. .+++..+..|+
T Consensus 462 ~~~~l~nRr~f~~~~y~~f~~Nv~~Gl~~~~--~R~l~s~l~~~ 503 (617)
T PF14752_consen 462 KPLALDNRRAFHIFTYFLFFYNVLVGLLSCL--WRLLKSALFGI 503 (617)
T ss_pred CCceeechhhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 333455676664 367788888888887764 56666555543
No 12
>PF06610 DUF1144: Protein of unknown function (DUF1144); InterPro: IPR010574 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=23.20 E-value=1.4e+02 Score=21.80 Aligned_cols=34 Identities=12% Similarity=0.134 Sum_probs=24.9
Q ss_pred hccCCCccchhHHHHHHHHHHHHHHH--HHHHHHHHH
Q psy12866 63 MANRKPFKLEATIRIYNVFQILSCAN--IIYQTGSAF 97 (106)
Q Consensus 63 Mk~Rkpf~Lk~~l~~yNl~~v~~S~~--~~~~~~~~~ 97 (106)
|+.+.|+.+|. ...=++.+++||.. |+.|++.++
T Consensus 1 m~~~~~~r~R~-a~ADTfAmVvf~~v~gm~iEifisG 36 (143)
T PF06610_consen 1 MKHSAPSRLRS-AAADTFAMVVFCFVTGMLIEIFISG 36 (143)
T ss_pred CCCCCcchHHH-HHHhHHHHHHHHHHHHHHHHHHHcc
Confidence 78888999984 45677888888865 666666554
No 13
>PF04789 DUF621: Protein of unknown function (DUF621); InterPro: IPR006874 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans, and is noted to have possible G-protein-coupled receptor-like activity.
Probab=22.21 E-value=1.8e+02 Score=23.73 Aligned_cols=47 Identities=23% Similarity=0.340 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhHhhhcchhhhcc--CCCcc---chhHHHHHHHHHHHHHHHHHH
Q psy12866 43 FQIGTSLVYLFIVLYAGPRFMAN--RKPFK---LEATIRIYNVFQILSCANIIY 91 (106)
Q Consensus 43 ~~i~i~~~Yl~~V~~~Gp~~Mk~--Rkpf~---Lk~~l~~yNl~~v~~S~~~~~ 91 (106)
.|+.|.+.|..+|.++. .||+ ++..| ||..+.+.=++|+--+.++..
T Consensus 198 IPi~Il~iYiAIIiKI~--~MKkssLnK~Ei~ILKQAifIFvlFQ~ss~VFl~~ 249 (305)
T PF04789_consen 198 IPIFILVIYIAIIIKII--KMKKSSLNKNEITILKQAIFIFVLFQASSCVFLLC 249 (305)
T ss_pred HHHHHHHHHHHHHHHHH--HHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 57899999999987665 7875 45555 677777777777766555443
No 14
>MTH00169 ATP8 ATP synthase F0 subunit 8; Provisional
Probab=21.88 E-value=80 Score=19.92 Aligned_cols=25 Identities=16% Similarity=0.218 Sum_probs=19.4
Q ss_pred hhHHHHHHHHHHhHhhhcchhhhcc
Q psy12866 41 LNFQIGTSLVYLFIVLYAGPRFMAN 65 (106)
Q Consensus 41 p~~~i~i~~~Yl~~V~~~Gp~~Mk~ 65 (106)
.|..+...++|.+++..+.|++.+.
T Consensus 14 ~Wl~i~f~~ly~l~s~~iLPri~~~ 38 (67)
T MTH00169 14 IWTLIILFFLFSLLVNYILPKIQQQ 38 (67)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888888998888889987653
No 15
>PF13221 DUF4029: Protein of unknown function (DUF4029)
Probab=21.81 E-value=1.5e+02 Score=19.76 Aligned_cols=23 Identities=17% Similarity=0.365 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy12866 74 TIRIYNVFQILSCANIIYQTGSA 96 (106)
Q Consensus 74 ~l~~yNl~~v~~S~~~~~~~~~~ 96 (106)
++.++|+++-+.|+|+++-.+..
T Consensus 61 l~k~gnivlq~icayivfvvl~k 83 (96)
T PF13221_consen 61 LMKLGNIVLQVICAYIVFVVLDK 83 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999998876543
No 16
>PF06454 DUF1084: Protein of unknown function (DUF1084); InterPro: IPR009457 This entry consists of several hypothetical plant specific proteins of unknown function.
Probab=21.60 E-value=3.8e+02 Score=21.04 Aligned_cols=53 Identities=15% Similarity=0.047 Sum_probs=32.6
Q ss_pred hhHHHHHHHHHHhHhhhcchhhhccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12866 41 LNFQIGTSLVYLFIVLYAGPRFMANRKPFKLEATIRIYNVFQILSCANIIYQTGSAFF 98 (106)
Q Consensus 41 p~~~i~i~~~Yl~~V~~~Gp~~Mk~Rkpf~Lk~~l~~yNl~~v~~S~~~~~~~~~~~~ 98 (106)
+...+...+.|+..+..+---+-.+ -+..-.+++.++++.|+.....++..|.
T Consensus 133 ~~~~~iN~~iY~~~i~i~i~~~~~~-----~~~v~~i~~~~~A~isli~a~~Fl~YG~ 185 (281)
T PF06454_consen 133 PIFIVINVVIYLFQIIIWILLFFSP-----SSTVSIIYAIFIAVISLIAALGFLYYGG 185 (281)
T ss_pred hHHHHHHHHHHHHHHHHHhheeccc-----chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666677776543222111111 1278888999999999888777776654
No 17
>PF14147 Spore_YhaL: Sporulation protein YhaL
Probab=20.32 E-value=1.5e+02 Score=18.11 Aligned_cols=15 Identities=13% Similarity=0.115 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHH
Q psy12866 81 FQILSCANIIYQTGS 95 (106)
Q Consensus 81 ~~v~~S~~~~~~~~~ 95 (106)
.-+++|+||+.....
T Consensus 10 ~gI~~S~ym~v~t~~ 24 (52)
T PF14147_consen 10 AGIIFSGYMAVKTAK 24 (52)
T ss_pred HHHHHHHHHHHHHHH
Confidence 346688888876554
Done!