Query psy12866
Match_columns 106
No_of_seqs 131 out of 773
Neff 5.6
Searched_HMMs 29240
Date Fri Aug 16 21:46:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12866.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12866hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b0f_A C4B-binding protein alp 13.3 74 0.0025 19.4 1.2 27 58-84 19-46 (65)
2 2wwb_C SEC61BETA, protein tran 13.2 1.3E+02 0.0045 19.5 2.5 29 26-56 57-85 (96)
3 3ixz_B Potassium-transporting 10.8 1.7E+02 0.0057 22.3 2.7 25 29-54 23-47 (290)
4 2ww9_C Protein transport prote 10.5 1.8E+02 0.006 18.6 2.3 31 24-56 46-76 (87)
5 3hi2_B Motility quorum-sensing 9.7 84 0.0029 20.6 0.6 13 63-75 4-17 (101)
6 3he4_A Synzip6; heterodimeric 7.1 2.7E+02 0.0093 15.9 2.0 22 63-84 8-29 (56)
7 3arc_L Photosystem II reaction 7.1 3.5E+02 0.012 14.5 4.5 23 65-87 6-28 (37)
8 2bkm_A Truncated hemoglobin fr 6.9 5E+02 0.017 16.2 4.9 48 12-63 15-62 (128)
9 1rh5_C Secbeta; protein transl 6.5 3.6E+02 0.012 15.3 2.3 17 40-56 29-45 (53)
10 1ux8_A YJBI protein; oxygen st 6.3 5.7E+02 0.019 16.1 4.9 44 14-61 18-61 (132)
No 1
>4b0f_A C4B-binding protein alpha chain; complement system, immune system; 2.80A {Homo sapiens}
Probab=13.25 E-value=74 Score=19.40 Aligned_cols=27 Identities=19% Similarity=0.433 Sum_probs=22.3
Q ss_pred cchhhhcc-CCCccchhHHHHHHHHHHH
Q psy12866 58 AGPRFMAN-RKPFKLEATIRIYNVFQIL 84 (106)
Q Consensus 58 ~Gp~~Mk~-Rkpf~Lk~~l~~yNl~~v~ 84 (106)
.|.++|+- -.|.+.|..+-+|-+.+=+
T Consensus 19 ~G~klmqCLp~p~dVk~ALEvYKlsLEI 46 (65)
T 4b0f_A 19 TGKRLMQCLPNPEDVKMALEVYKLSLEI 46 (65)
T ss_dssp HHHHHTTSSSSHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhcCCCHHHHhHHhheeechhhH
Confidence 69999996 4689999999999976544
No 2
>2wwb_C SEC61BETA, protein transport protein SEC61 subunit beta; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=13.23 E-value=1.3e+02 Score=19.53 Aligned_cols=29 Identities=14% Similarity=0.096 Sum_probs=18.7
Q ss_pred hhcCCCcCccccccchhHHHHHHHHHHhHhh
Q psy12866 26 KDADRRTDGYLFLNSLNFQIGTSLVYLFIVL 56 (106)
Q Consensus 26 ~~~d~r~~~wplm~sp~~~i~i~~~Yl~~V~ 56 (106)
...|++...+-+ +|..+++++++|..+|+
T Consensus 57 RfY~dds~GlKV--~P~~VLv~sl~Fi~~Vi 85 (96)
T 2wwb_C 57 RFYTEDSPGLKV--GPVPVLVMSLLFIASVF 85 (96)
T ss_dssp ----CCSCCCCC--SSCSHHHHHHHHHHHHH
T ss_pred eeeecCCCceEE--CCEEehhhHHHHHHHHH
Confidence 333444445532 68889999999998887
No 3
>3ixz_B Potassium-transporting ATPase subunit beta; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_B 2xzb_B
Probab=10.82 E-value=1.7e+02 Score=22.32 Aligned_cols=25 Identities=24% Similarity=0.187 Sum_probs=11.3
Q ss_pred CCCcCccccccchhHHHHHHHHHHhH
Q psy12866 29 DRRTDGYLFLNSLNFQIGTSLVYLFI 54 (106)
Q Consensus 29 d~r~~~wplm~sp~~~i~i~~~Yl~~ 54 (106)
||++.+..- .+......|++.|++|
T Consensus 23 N~~t~~~lG-RT~~sW~~IllFYliF 47 (290)
T 3ixz_B 23 NPDTGQMLG-RTLSRWVWISLYYVAF 47 (290)
T ss_pred cCCCCceeC-cchhhHHHHHHHHHHH
Confidence 555554421 2333445555555544
No 4
>2ww9_C Protein transport protein SEB2; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_C
Probab=10.46 E-value=1.8e+02 Score=18.60 Aligned_cols=31 Identities=16% Similarity=0.193 Sum_probs=16.0
Q ss_pred HhhhcCCCcCccccccchhHHHHHHHHHHhHhh
Q psy12866 24 AAKDADRRTDGYLFLNSLNFQIGTSLVYLFIVL 56 (106)
Q Consensus 24 ~~~~~d~r~~~wplm~sp~~~i~i~~~Yl~~V~ 56 (106)
++...+++...+-+ +|..++.++++|..+|+
T Consensus 46 llrfYtdds~GlKV--~P~~VLv~sl~FIa~Vi 76 (87)
T 2ww9_C 46 ILKLYTDEANGFRV--DSLVVLFLSVGFIFSVI 76 (87)
T ss_dssp ------------CC--CHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCCCceEE--cCeeehhhHHHHHHHHH
Confidence 33333444445532 79999999999999887
No 5
>3hi2_B Motility quorum-sensing regulator MQSR; toxin-antitoxin system, Zn-binding protein, MQSA, YGIU B3022, B3021, stress response; 2.00A {Escherichia coli k-12}
Probab=9.66 E-value=84 Score=20.57 Aligned_cols=13 Identities=31% Similarity=0.511 Sum_probs=9.0
Q ss_pred hccCCC-ccchhHH
Q psy12866 63 MANRKP-FKLEATI 75 (106)
Q Consensus 63 Mk~Rkp-f~Lk~~l 75 (106)
|++|+| |+|..+-
T Consensus 4 MEKrtPhy~L~~ik 17 (101)
T 3hi2_B 4 MEKRTPHTRLSQVK 17 (101)
T ss_dssp CEESSCSSCHHHHH
T ss_pred CccCCCCCcHHHHH
Confidence 777777 6776554
No 6
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=7.12 E-value=2.7e+02 Score=15.90 Aligned_cols=22 Identities=27% Similarity=0.514 Sum_probs=15.9
Q ss_pred hccCCCccchhHHHHHHHHHHH
Q psy12866 63 MANRKPFKLEATIRIYNVFQIL 84 (106)
Q Consensus 63 Mk~Rkpf~Lk~~l~~yNl~~v~ 84 (106)
.|||-+|+||.--.+-|++--+
T Consensus 8 lknrvayklkenaklenivarl 29 (56)
T 3he4_A 8 LKNRVAYKLKENAKLENIVARL 29 (56)
T ss_dssp ---CCCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcchHHHHHHHH
Confidence 6899999999988888877544
No 7
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=7.08 E-value=3.5e+02 Score=14.51 Aligned_cols=23 Identities=35% Similarity=0.457 Sum_probs=18.3
Q ss_pred cCCCccchhHHHHHHHHHHHHHH
Q psy12866 65 NRKPFKLEATIRIYNVFQILSCA 87 (106)
Q Consensus 65 ~Rkpf~Lk~~l~~yNl~~v~~S~ 87 (106)
|++|.+|.+.-..|-+.++..-+
T Consensus 6 n~q~VELNRTSLy~GLLlifvla 28 (37)
T 3arc_L 6 NRQPVELNRTSLYLGLLLILVLA 28 (37)
T ss_dssp TCCCBCCCHHHHHHHHHHHHHHH
T ss_pred CCCcceechhhHHHHHHHHHHHH
Confidence 57889999999999888765443
No 8
>2bkm_A Truncated hemoglobin from geobacillus stearothermophilus; hypothetical protein, oxygen transport, transport, oxygen storage; HET: HEM; 1.5A {Geobacillus stearothermophilus}
Probab=6.94 E-value=5e+02 Score=16.18 Aligned_cols=48 Identities=17% Similarity=0.117 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHHHhhhcCCCcCccccccchhHHHHHHHHHHhHhhhcchhhh
Q psy12866 12 GWFRLFTALEEFAAKDADRRTDGYLFLNSLNFQIGTSLVYLFIVLYAGPRFM 63 (106)
Q Consensus 12 ~w~~l~~~~~~~~~~~~d~r~~~wplm~sp~~~i~i~~~Yl~~V~~~Gp~~M 63 (106)
.=+++++.|+..+.. ||+....+- +++....--...++..++ +||...
T Consensus 15 ~i~~lv~~FY~~v~~--Dp~l~~~F~-~d~~~~~~~l~~Fl~~~~-GGp~~Y 62 (128)
T 2bkm_A 15 TVAKLVEAFYRRVAA--HPDLRPIFP-DDLTETAHKQKQFLTQYL-GGPPLY 62 (128)
T ss_dssp HHHHHHHHHHHHHHH--CTTTGGGSC-SCCHHHHHHHHHHHHHHT-TSCCHH
T ss_pred HHHHHHHHHHHHHhc--CHHHHHHCc-cCHHHHHHHHHHHHHHHc-CCCCcc
Confidence 345677766654443 777655543 455566777778888887 888543
No 9
>1rh5_C Secbeta; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.29.1 PDB: 1rhz_C 2yxq_C 2yxr_C 3kcr_C 3dkn_C 3bo1_C 3bo0_C
Probab=6.50 E-value=3.6e+02 Score=15.34 Aligned_cols=17 Identities=18% Similarity=0.391 Sum_probs=14.8
Q ss_pred chhHHHHHHHHHHhHhh
Q psy12866 40 SLNFQIGTSLVYLFIVL 56 (106)
Q Consensus 40 sp~~~i~i~~~Yl~~V~ 56 (106)
+|..++.+++++.++|.
T Consensus 29 ~P~~Vl~~si~~i~~V~ 45 (53)
T 1rh5_C 29 KPEHVIGVTVAFVIIEA 45 (53)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CCeehhhhHHHHHHHHH
Confidence 79999999999988876
No 10
>1ux8_A YJBI protein; oxygen storage/transport, truncated hemoglobin, oxygen transport; HET: HEM; 2.15A {Bacillus subtilis} SCOP: a.1.1.1
Probab=6.26 E-value=5.7e+02 Score=16.14 Aligned_cols=44 Identities=18% Similarity=0.129 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhcCCCcCccccccchhHHHHHHHHHHhHhhhcchh
Q psy12866 14 FRLFTALEEFAAKDADRRTDGYLFLNSLNFQIGTSLVYLFIVLYAGPR 61 (106)
Q Consensus 14 ~~l~~~~~~~~~~~~d~r~~~wplm~sp~~~i~i~~~Yl~~V~~~Gp~ 61 (106)
+++++.|+..+.. ||+....+- .++....--...++.-++ +||.
T Consensus 18 ~~lv~~FY~~v~~--Dp~l~~~F~-~d~~~~~~~l~~Fl~~~~-GGp~ 61 (132)
T 1ux8_A 18 SQLVDTFYERVAS--HPLLKPIFP-SDLTETARKQKQFLTQYL-GGPP 61 (132)
T ss_dssp HHHHHHHHHHHHH--CTTTGGGSC-SCCHHHHHHHHHHHHHHT-TSCC
T ss_pred HHHHHHHHHHHHc--ChHHHHHCc-cCHHHHHHHHHHHHHHHh-CCCc
Done!