Query psy12866
Match_columns 106
No_of_seqs 131 out of 773
Neff 5.6
Searched_HMMs 13730
Date Fri Aug 16 21:46:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12866.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/12866hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtl1 f.23.31.1 (L:1-37) Pho 18.4 61 0.0045 16.2 4.3 22 65-86 6-27 (37)
2 d1dlya_ a.1.1.1 (A:) Protozoan 11.2 1.4E+02 0.01 16.8 5.0 46 14-62 13-58 (121)
3 d1gsaa1 c.30.1.3 (A:1-122) Pro 9.7 52 0.0038 20.0 1.2 18 61-78 83-100 (122)
4 d2ezwa1 a.31.1.1 (A:12-61) cAM 7.4 1.1E+02 0.008 16.3 1.8 14 92-105 16-30 (50)
5 d1dlwa_ a.1.1.1 (A:) Protozoan 5.1 3E+02 0.022 15.3 5.0 47 14-63 13-59 (116)
6 d2d8za2 g.39.1.3 (A:33-64) Fou 4.5 76 0.0056 15.4 -0.1 15 58-72 10-25 (32)
7 d1ikpa3 f.1.5.1 (A:252-394) Ex 4.2 4.4E+02 0.032 16.2 3.7 34 60-93 19-52 (143)
8 d2glia2 g.37.1.1 (A:135-167) F 4.2 2.2E+02 0.016 13.6 1.6 14 65-78 13-26 (33)
9 d1xrda1 f.3.1.1 (A:1-52) Light 4.1 3.2E+02 0.023 14.4 4.4 32 69-100 8-39 (52)
10 d1rlma_ c.108.1.10 (A:) Sugar 3.7 1.3E+02 0.0095 18.8 0.6 13 58-70 257-269 (269)
No 1
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=18.35 E-value=61 Score=16.21 Aligned_cols=22 Identities=32% Similarity=0.442 Sum_probs=17.7
Q ss_pred cCCCccchhHHHHHHHHHHHHH
Q psy12866 65 NRKPFKLEATIRIYNVFQILSC 86 (106)
Q Consensus 65 ~Rkpf~Lk~~l~~yNl~~v~~S 86 (106)
|++|.+|.+.-..|-+.++..-
T Consensus 6 n~q~veLNrtsLy~GlLlifvl 27 (37)
T d2axtl1 6 NRQPVELNRTSLYLGLLLILVL 27 (37)
T ss_dssp SCCCBCCCHHHHHHHHHHHHHH
T ss_pred CCCccccchhhHHHHHHHHHHH
Confidence 5789999999999988776543
No 2
>d1dlya_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Green alga (Chlamydomonas eugametos) [TaxId: 3054]}
Probab=11.20 E-value=1.4e+02 Score=16.80 Aligned_cols=46 Identities=15% Similarity=0.153 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhhhcCCCcCccccccchhHHHHHHHHHHhHhhhcchhh
Q psy12866 14 FRLFTALEEFAAKDADRRTDGYLFLNSLNFQIGTSLVYLFIVLYAGPRF 62 (106)
Q Consensus 14 ~~l~~~~~~~~~~~~d~r~~~wplm~sp~~~i~i~~~Yl~~V~~~Gp~~ 62 (106)
+++++.+...++ .||+...++--.+.....--...|+..++ +||..
T Consensus 13 ~~lv~~FY~~i~--~d~~l~~~F~~~d~~~~~~~~~~f~~~~~-GGp~~ 58 (121)
T d1dlya_ 13 EAAVDKFYNKIV--ADPTVSTYFSNTDMKVQRSKQFAFLAYAL-GGASE 58 (121)
T ss_dssp HHHHHHHHHHHH--TCTTTGGGGTTSCHHHHHHHHHHHHHHHT-TSSSC
T ss_pred HHHHHHHHHHHH--cCHHHHHhCCCCCHHHHHHHHHHHHHHHh-CCCcc
Confidence 456666665443 48888777643344455566677888887 88753
No 3
>d1gsaa1 c.30.1.3 (A:1-122) Prokaryotic glutathione synthetase, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=9.66 E-value=52 Score=19.99 Aligned_cols=18 Identities=28% Similarity=0.438 Sum_probs=14.0
Q ss_pred hhhccCCCccchhHHHHH
Q psy12866 61 RFMANRKPFKLEATIRIY 78 (106)
Q Consensus 61 ~~Mk~Rkpf~Lk~~l~~y 78 (106)
-+||+=|||+.+.+-..|
T Consensus 83 i~mRkDPPfd~~Yl~~T~ 100 (122)
T d1gsaa1 83 ILMRKDPPFDTEFIYATY 100 (122)
T ss_dssp EEECCCCCCCHHHHHHHH
T ss_pred EEEecCCCCcHHHHHHHH
Confidence 479999999998765544
No 4
>d2ezwa1 a.31.1.1 (A:12-61) cAMP-dependent protein kinase type I-alpha regulatory subunit {Cow (Bos taurus) [TaxId: 9913]}
Probab=7.39 E-value=1.1e+02 Score=16.26 Aligned_cols=14 Identities=21% Similarity=0.190 Sum_probs=10.2
Q ss_pred HHHHHHhhhhccC-C
Q psy12866 92 QTGSAFFVSLSIS-P 105 (106)
Q Consensus 92 ~~~~~~~~~~~~~-~ 105 (106)
.++..++..||.+ |
T Consensus 16 ~lLKdcIVqLCi~rP 30 (50)
T d2ezwa1 16 ALLKDSIVQLCTARP 30 (50)
T ss_dssp HHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHhcCC
Confidence 3566777888888 5
No 5
>d1dlwa_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Ciliate (Paramecium caudatum) [TaxId: 5885]}
Probab=5.07 E-value=3e+02 Score=15.30 Aligned_cols=47 Identities=15% Similarity=0.139 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhhhcCCCcCccccccchhHHHHHHHHHHhHhhhcchhhh
Q psy12866 14 FRLFTALEEFAAKDADRRTDGYLFLNSLNFQIGTSLVYLFIVLYAGPRFM 63 (106)
Q Consensus 14 ~~l~~~~~~~~~~~~d~r~~~wplm~sp~~~i~i~~~Yl~~V~~~Gp~~M 63 (106)
.++++.+...+. .||+....+--.+......-...|+..++ +||..-
T Consensus 13 ~~lv~~fY~~i~--~d~~l~~~F~~~d~~~~~~~~~~fl~~~~-GGp~~Y 59 (116)
T d1dlwa_ 13 QAVTAQFYANIQ--ADATVATFFNGIDMPNQTNKTAAFLCAAL-GGPNAW 59 (116)
T ss_dssp HHHHHHHHHHHH--TCTTTGGGGTTCCHHHHHHHHHHHHHHHT-TCSSCC
T ss_pred HHHHHHHHHHHH--cCHHHHHhcCCCCHHHHHHHHHHHHHHHc-CCCCCC
Confidence 455666555333 48877766432233445556788888888 898543
No 6
>d2d8za2 g.39.1.3 (A:33-64) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.49 E-value=76 Score=15.42 Aligned_cols=15 Identities=20% Similarity=0.330 Sum_probs=10.7
Q ss_pred cchh-hhccCCCccch
Q psy12866 58 AGPR-FMANRKPFKLE 72 (106)
Q Consensus 58 ~Gp~-~Mk~Rkpf~Lk 72 (106)
.|+| .||+-+||=++
T Consensus 10 ~GQry~~rd~~PyC~~ 25 (32)
T d2d8za2 10 SGQRFTARDDFAYCLN 25 (32)
T ss_dssp TTSCCEESSSSEECHH
T ss_pred cCceeeecCCCeehHH
Confidence 5776 48888888654
No 7
>d1ikpa3 f.1.5.1 (A:252-394) Exotoxin A, middle domain {Pseudomonas aeruginosa [TaxId: 287]}
Probab=4.21 E-value=4.4e+02 Score=16.19 Aligned_cols=34 Identities=18% Similarity=0.086 Sum_probs=27.4
Q ss_pred hhhhccCCCccchhHHHHHHHHHHHHHHHHHHHH
Q psy12866 60 PRFMANRKPFKLEATIRIYNVFQILSCANIIYQT 93 (106)
Q Consensus 60 p~~Mk~Rkpf~Lk~~l~~yNl~~v~~S~~~~~~~ 93 (106)
-.+-+.|||=++......=--.|-+.|+|++-++
T Consensus 19 ET~~R~R~PR~~~~~~~C~Y~~Q~iVsL~~A~Ri 52 (143)
T d1ikpa3 19 ETFTRHRQPRGAEQLEQCGYPVQRLVALYLAARL 52 (143)
T ss_dssp GGGGCSSCCCSCHHHHHTHHHHHHHHHHHHHTTC
T ss_pred HHHhhccCCCCchhhHhcccHHHHHHHHHHHHHH
Confidence 3578899999998888877778888888877654
No 8
>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.17 E-value=2.2e+02 Score=13.60 Aligned_cols=14 Identities=21% Similarity=0.444 Sum_probs=9.2
Q ss_pred cCCCccchhHHHHH
Q psy12866 65 NRKPFKLEATIRIY 78 (106)
Q Consensus 65 ~Rkpf~Lk~~l~~y 78 (106)
+-+||+=+..|+.|
T Consensus 13 ~~~pf~a~YkLv~H 26 (33)
T d2glia2 13 ELRPFKAQYMLVVH 26 (33)
T ss_dssp TTCCCSSHHHHHHH
T ss_pred CCCcchhHHHHHHH
Confidence 44688777766654
No 9
>d1xrda1 f.3.1.1 (A:1-52) Light-harvesting complex subunits {Rhodospirillum rubrum [TaxId: 1085]}
Probab=4.14 E-value=3.2e+02 Score=14.36 Aligned_cols=32 Identities=13% Similarity=0.007 Sum_probs=21.2
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12866 69 FKLEATIRIYNVFQILSCANIIYQTGSAFFVS 100 (106)
Q Consensus 69 f~Lk~~l~~yNl~~v~~S~~~~~~~~~~~~~~ 100 (106)
||-|+.++.--.++.++.+.+=+-.+....+|
T Consensus 8 fDPRr~lva~~~fL~~LAl~IHfiLLSt~rfN 39 (52)
T d1xrda1 8 FDPRQALVGLATFLFVLALLIHFILLSTERFN 39 (52)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHhccCccc
Confidence 67788888777777777766555555544444
No 10
>d1rlma_ c.108.1.10 (A:) Sugar phosphatase SupH (YbiV) {Escherichia coli [TaxId: 562]}
Probab=3.73 E-value=1.3e+02 Score=18.81 Aligned_cols=13 Identities=23% Similarity=0.368 Sum_probs=7.3
Q ss_pred cchhhhccCCCcc
Q psy12866 58 AGPRFMANRKPFK 70 (106)
Q Consensus 58 ~Gp~~Mk~Rkpf~ 70 (106)
...+++++|.||+
T Consensus 257 ~i~~~l~~~~~~~ 269 (269)
T d1rlma_ 257 VIQAVLDNTYPFN 269 (269)
T ss_dssp HHHHHHHTCTTCC
T ss_pred HHHHHHhcCCCCC
Confidence 3445666666664
Done!