RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy12866
         (106 letters)



>gnl|CDD|216332 pfam01151, ELO, GNS1/SUR4 family.  Members of this family are
           involved in long chain fatty acid elongation systems
           that produce the 26-carbon precursors for ceramide and
           sphingolipid synthesis. Predicted to be integral
           membrane proteins, in eukaryotes they are probably
           located on the endoplasmic reticulum. Yeast ELO3 affects
           plasma membrane H+-ATPase activity, and may act on a
           glucose-signaling pathway that controls the expression
           of several genes that are transcriptionally regulated by
           glucose such as PMA1.
          Length = 244

 Score = 52.2 bits (126), Expect = 2e-09
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 1/66 (1%)

Query: 36  LFLNSLNFQIGTSLVYLFIVLYAGPRFMANRKPFKLEATIRIYNVFQILSCANIIYQTGS 95
             L+S    I   ++YL  V   GP+ M NRKPF L+  + ++N+F +L      Y   +
Sbjct: 1   PLLSSPWPVILIIVLYLVFVFL-GPKIMRNRKPFDLKRLLIVHNLFLVLLSLYGFYGLLA 59

Query: 96  AFFVSL 101
                 
Sbjct: 60  GAGWGR 65


>gnl|CDD|204462 pfam10361, DUF2434, Protein of unknown function (DUF2434).  This is
           a family of proteins conserved in fungi. The function is
           not known.
          Length = 296

 Score = 26.6 bits (59), Expect = 3.0
 Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 2/46 (4%)

Query: 60  PRFMANRKPFKLEATIRIYNVFQILSCANIIYQTGSAFFVSLSISP 105
           PR + NR  F L AT   + +   LS   I Y    AF    + SP
Sbjct: 249 PRGLWNRLIFYLSATPLRFLLAITLSGVKIGYAAALAFD--WTYSP 292


>gnl|CDD|223631 COG0557, VacB, Exoribonuclease R [Transcription].
          Length = 706

 Score = 25.0 bits (55), Expect = 9.4
 Identities = 6/26 (23%), Positives = 12/26 (46%)

Query: 22  EFAAKDADRRTDGYLFLNSLNFQIGT 47
           E  A++A+R     L    +  ++G 
Sbjct: 599 ERRAQEAERDVIDLLKAEYMKKRVGE 624


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.326    0.139    0.410 

Gapped
Lambda     K      H
   0.267   0.0594    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,253,989
Number of extensions: 438222
Number of successful extensions: 456
Number of sequences better than 10.0: 1
Number of HSP's gapped: 455
Number of HSP's successfully gapped: 21
Length of query: 106
Length of database: 10,937,602
Length adjustment: 71
Effective length of query: 35
Effective length of database: 7,788,468
Effective search space: 272596380
Effective search space used: 272596380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.5 bits)