RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12866
         (106 letters)



>d1wc9a_ d.278.1.2 (A:) Trafficking protein particle complex
          subunit 3, Bet3 homolog {Mouse (Mus musculus) [TaxId:
          10090]}
          Length = 161

 Score = 24.7 bits (54), Expect = 2.4
 Identities = 9/38 (23%), Positives = 15/38 (39%)

Query: 26 KDADRRTDGYLFLNSLNFQIGTSLVYLFIVLYAGPRFM 63
          KD +   D    L+ + + IG  L+  F+      R  
Sbjct: 21 KDYENDEDVNKQLDRMGYNIGVRLIEDFLARSNVGRCH 58


>d1y0ba1 c.61.1.1 (A:1-191) Xanthine phosphoribosyltransferase
          {Bacillus subtilis [TaxId: 1423]}
          Length = 191

 Score = 24.2 bits (52), Expect = 4.0
 Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 19 ALEEFAAKDADRRTDGYLFLNS-LNFQIGTSLVYLFIVLYA 58
          AL+    ++    +D  L ++S LN QI   L+      +A
Sbjct: 3  ALKRKIEEEGVVLSDQVLKVDSFLNHQIDPLLMQRIGDEFA 43


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.139    0.410 

Gapped
Lambda     K      H
   0.267   0.0656    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 365,462
Number of extensions: 13774
Number of successful extensions: 25
Number of sequences better than 10.0: 1
Number of HSP's gapped: 25
Number of HSP's successfully gapped: 4
Length of query: 106
Length of database: 2,407,596
Length adjustment: 66
Effective length of query: 40
Effective length of database: 1,501,416
Effective search space: 60056640
Effective search space used: 60056640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.0 bits)