BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12868
(302 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UM7|A Chain A, Crystal Structure Of The Human Two Pore Domain K+ Ion
Channel Traak (K2p4.1)
pdb|3UM7|B Chain B, Crystal Structure Of The Human Two Pore Domain K+ Ion
Channel Traak (K2p4.1)
pdb|4I9W|A Chain A, Human Two Pore Domain K+ Channel Traak (k2p4.1) - Fab
Complex Structure
pdb|4I9W|B Chain B, Human Two Pore Domain K+ Channel Traak (k2p4.1) - Fab
Complex Structure
Length = 309
Score = 77.4 bits (189), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 92/190 (48%), Gaps = 11/190 (5%)
Query: 95 WSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVLAQSFR 154
W +A FS +I T IGYGN+ RT G+ + YA+ GIPL+ + +G L S R
Sbjct: 114 WDLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLGSSLR 173
Query: 155 WLYTWLYECTMEDRRSEGEVSPRIIVPSTACLWVLGG---YVATGTVMFAEWENWPILDS 211
+ + + V P ++ +A L++L G +V T T +F E+W L++
Sbjct: 174 HGIGHIEAIFL-----KWHVPPELVRVLSAMLFLLIGCLLFVLTPTFVFCYMEDWSKLEA 228
Query: 212 CYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLGMGLIAMCFDLMREDVRV 271
YF + +L +G GD+V GA D + + + ++LLG+ A + +RV
Sbjct: 229 IYFVIVTLTTVGFGDYVAGA---DPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWLRV 285
Query: 272 KVRNLKTDIG 281
R + ++G
Sbjct: 286 VSRRTRAEMG 295
>pdb|3UKM|A Chain A, Crystal Structure Of The Human Two Pore Domain Potassium
Ion Channel K2p1 (Twik-1)
pdb|3UKM|B Chain B, Crystal Structure Of The Human Two Pore Domain Potassium
Ion Channel K2p1 (Twik-1)
pdb|3UKM|C Chain C, Crystal Structure Of The Human Two Pore Domain Potassium
Ion Channel K2p1 (Twik-1)
pdb|3UKM|D Chain D, Crystal Structure Of The Human Two Pore Domain Potassium
Ion Channel K2p1 (Twik-1)
Length = 280
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 83/183 (45%), Gaps = 41/183 (22%)
Query: 95 WSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGK------- 147
W F +AL F+ ++ + GYG+ VP + GKA ++Y+V GIP +L+ + +
Sbjct: 92 WDFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRITVHVT 151
Query: 148 ---VLAQSFRWLYTWLYECTMEDRRSEGEVSPRIIVPSTACLWVLGGYVATGTVMFAEW- 203
VL RW + S +++ A VL G+V F
Sbjct: 152 RRPVLYFHIRWGF-----------------SKQVVAIVHA---VLLGFVTVSCFFFIPAA 191
Query: 204 ------ENWPILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLGMGL 257
++W L+S YFC SL IG+GD+VPG + K K+ I YLLL GL
Sbjct: 192 VFSVLEDDWNFLESFYFCFISLSTIGLGDYVPGEG-YNQKFRELYKIGIT-CYLLL--GL 247
Query: 258 IAM 260
IAM
Sbjct: 248 IAM 250
>pdb|2A9H|A Chain A, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
pdb|2A9H|B Chain B, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
pdb|2A9H|C Chain C, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
pdb|2A9H|D Chain D, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
Length = 155
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 28/47 (59%)
Query: 96 SFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYF 142
S+P AL +S+ T +GYG++ P TL G+ VV V GI Y L F
Sbjct: 84 SYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVF 130
>pdb|3T1C|A Chain A, Crystal Structure Of Nak Channel D66y Mutant
pdb|3T1C|B Chain B, Crystal Structure Of Nak Channel D66y Mutant
Length = 97
Score = 38.1 bits (87), Expect = 0.005, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 23/38 (60%)
Query: 100 ALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPL 137
AL FS+ T +GYGN P+T GK T++Y GI L
Sbjct: 36 ALYFSVVTLTTVGYGNFSPQTDFGKIFTILYIFIGIGL 73
Score = 34.7 bits (78), Expect = 0.076, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 9/64 (14%)
Query: 195 TGTVMFAEWENWPILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLG 254
+GT+ ++ E +D+ YF V +L +G G+F P + I +Y+ +G
Sbjct: 20 SGTIFYSTVEGLRPIDALYFSVVTLTTVGYGNFSPQTD---------FGKIFTILYIFIG 70
Query: 255 MGLI 258
+GL+
Sbjct: 71 IGLV 74
>pdb|1F6G|A Chain A, Potassium Channel (Kcsa) Full-Length Fold
pdb|1F6G|B Chain B, Potassium Channel (Kcsa) Full-Length Fold
pdb|1F6G|C Chain C, Potassium Channel (Kcsa) Full-Length Fold
pdb|1F6G|D Chain D, Potassium Channel (Kcsa) Full-Length Fold
Length = 160
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 28/45 (62%)
Query: 96 SFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVL 140
++PAAL +S+ T +GYG++ P TL G+ VV V GI + L
Sbjct: 61 TYPAALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGL 105
>pdb|3T4D|A Chain A, Crystal Structure Of Nak2k Channel Y55f Mutant
pdb|3T4D|B Chain B, Crystal Structure Of Nak2k Channel Y55f Mutant
Length = 97
Score = 37.0 bits (84), Expect = 0.013, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 100 ALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPL 137
AL FS+ T +GYG+ P+T GK T++Y GI L
Sbjct: 36 ALFFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGL 73
Score = 35.0 bits (79), Expect = 0.053, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 9/64 (14%)
Query: 195 TGTVMFAEWENWPILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLG 254
+GT+ ++ E +D+ +F V +L +G GDF P + I +Y+ +G
Sbjct: 20 SGTIFYSTVEGLRPIDALFFSVVTLTTVGYGDFSPQTD---------FGKIFTILYIFIG 70
Query: 255 MGLI 258
+GL+
Sbjct: 71 IGLV 74
>pdb|3TET|A Chain A, Crystal Structure Of Nak2k Channel Y66f Mutant
pdb|3TET|B Chain B, Crystal Structure Of Nak2k Channel Y66f Mutant
Length = 97
Score = 37.0 bits (84), Expect = 0.014, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 9/64 (14%)
Query: 195 TGTVMFAEWENWPILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLG 254
+GT+ ++ E +D+ YF V +L +G GDF P + I +Y+ +G
Sbjct: 20 SGTIFYSTVEGLRPIDALYFSVVTLTTVGFGDFSPQTD---------FGKIFTILYIFIG 70
Query: 255 MGLI 258
+GL+
Sbjct: 71 IGLV 74
Score = 35.0 bits (79), Expect = 0.047, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 100 ALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPL 137
AL FS+ T +G+G+ P+T GK T++Y GI L
Sbjct: 36 ALYFSVVTLTTVGFGDFSPQTDFGKIFTILYIFIGIGL 73
>pdb|2P7T|C Chain C, Crystal Structure Of Kcsa Mutant
Length = 103
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 26/40 (65%)
Query: 96 SFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGI 135
++P AL +S+S T +GYG++ P TL G+ VV V GI
Sbjct: 40 TYPRALWWSVSTATTVGYGDLYPVTLWGRCVAVVVMVAGI 79
>pdb|3OUF|A Chain A, Structure Of A K+ Selective Nak Mutant
pdb|3OUF|B Chain B, Structure Of A K+ Selective Nak Mutant
Length = 97
Score = 36.6 bits (83), Expect = 0.018, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 100 ALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPL 137
AL FS+ T +GYG+ P+T GK T++Y GI L
Sbjct: 36 ALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGL 73
Score = 36.2 bits (82), Expect = 0.020, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 9/64 (14%)
Query: 195 TGTVMFAEWENWPILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLG 254
+GT+ ++ E +D+ YF V +L +G GDF P + I +Y+ +G
Sbjct: 20 SGTIFYSTVEGLRPIDALYFSVVTLTTVGYGDFSPQTD---------FGKIFTILYIFIG 70
Query: 255 MGLI 258
+GL+
Sbjct: 71 IGLV 74
>pdb|3T4Z|A Chain A, Crystal Structure Of Nak2k Channel Y55w Mutant
pdb|3T4Z|B Chain B, Crystal Structure Of Nak2k Channel Y55w Mutant
Length = 97
Score = 36.2 bits (82), Expect = 0.025, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 100 ALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPL 137
AL FS+ T +GYG+ P+T GK T++Y GI L
Sbjct: 36 ALWFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGL 73
Score = 34.3 bits (77), Expect = 0.086, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 9/64 (14%)
Query: 195 TGTVMFAEWENWPILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLG 254
+GT+ ++ E +D+ +F V +L +G GDF P + I +Y+ +G
Sbjct: 20 SGTIFYSTVEGLRPIDALWFSVVTLTTVGYGDFSPQTD---------FGKIFTILYIFIG 70
Query: 255 MGLI 258
+GL+
Sbjct: 71 IGLV 74
>pdb|3VOU|A Chain A, The Crystal Structure Of Nak-Navsulp Chimera Channel
pdb|3VOU|B Chain B, The Crystal Structure Of Nak-Navsulp Chimera Channel
Length = 148
Score = 35.8 bits (81), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 9/66 (13%)
Query: 193 VATGTVMFAEWENWPILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLL 252
+ +GT+ ++ E LD+ YF V +L +G G+F P + + +Y+
Sbjct: 38 LTSGTIFYSTVEGLRPLDALYFSVVTLTTVGDGNFSPQTDFGK---------VFTILYIF 88
Query: 253 LGMGLI 258
+G+GL+
Sbjct: 89 IGIGLV 94
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 100 ALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPL 137
AL FS+ T +G GN P+T GK T++Y GI L
Sbjct: 56 ALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGL 93
>pdb|3T2M|A Chain A, Crystal Structure Of Nak Channel N68d Mutant
pdb|3T2M|B Chain B, Crystal Structure Of Nak Channel N68d Mutant
Length = 97
Score = 35.8 bits (81), Expect = 0.028, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 9/64 (14%)
Query: 195 TGTVMFAEWENWPILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLG 254
+GT+ ++ E +D+ YF V +L +G GDF P + I +Y+ +G
Sbjct: 20 SGTIFYSTVEGLRPIDALYFSVVTLTTVGDGDFSPQTD---------FGKIFTILYIFIG 70
Query: 255 MGLI 258
+GL+
Sbjct: 71 IGLV 74
Score = 32.7 bits (73), Expect = 0.24, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 100 ALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPL 137
AL FS+ T +G G+ P+T GK T++Y GI L
Sbjct: 36 ALYFSVVTLTTVGDGDFSPQTDFGKIFTILYIFIGIGL 73
>pdb|3TCU|A Chain A, Crystal Structure Of Nak2k Channel D68e Mutant
pdb|3TCU|B Chain B, Crystal Structure Of Nak2k Channel D68e Mutant
Length = 97
Score = 35.8 bits (81), Expect = 0.029, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 100 ALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPL 137
AL FS+ T +GYG P+T GK T++Y GI L
Sbjct: 36 ALYFSVVTLTTVGYGEFSPQTDFGKIFTILYIFIGIGL 73
Score = 34.7 bits (78), Expect = 0.073, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 9/64 (14%)
Query: 195 TGTVMFAEWENWPILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLG 254
+GT+ ++ E +D+ YF V +L +G G+F P + I +Y+ +G
Sbjct: 20 SGTIFYSTVEGLRPIDALYFSVVTLTTVGYGEFSPQTD---------FGKIFTILYIFIG 70
Query: 255 MGLI 258
+GL+
Sbjct: 71 IGLV 74
>pdb|3EFF|K Chain K, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
pdb|3EFF|L Chain L, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
pdb|3EFF|M Chain M, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
pdb|3EFF|N Chain N, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
Length = 139
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 96 SFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVL 140
++P AL +S+ T +GYG++ P TL G+ VV V GI + L
Sbjct: 40 TYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGL 84
>pdb|1ZWI|C Chain C, Structure Of Mutant Kcsa Potassium Channel
Length = 103
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 26/40 (65%)
Query: 96 SFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGI 135
++P AL +S++ T +GYG++ P TL G+ VV V GI
Sbjct: 40 TYPRALWWSVATATTVGYGDLYPVTLWGRCVAVVVMVAGI 79
>pdb|2ATK|C Chain C, Structure Of A Mutant Kcsa K+ Channel
Length = 124
Score = 35.4 bits (80), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 26/40 (65%)
Query: 96 SFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGI 135
++P AL +S++ T +GYG++ P TL G+ VV V GI
Sbjct: 61 TYPRALWWSVATATTVGYGDLYPVTLWGRCVAVVVMVAGI 100
>pdb|3OR6|C Chain C, On The Structural Basis Of Modal Gating Behavior In
K+channels - E71q
Length = 103
Score = 35.4 bits (80), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 96 SFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGI 135
++P AL +S+ T +GYG++ P TL G+ VV V GI
Sbjct: 40 TYPRALWWSVQTATTVGYGDLYPVTLWGRCVAVVVMVAGI 79
>pdb|2HJF|C Chain C, Potassium Channel Kcsa-Fab Complex With Tetrabutylammonium
(Tba)
pdb|2DWD|C Chain C, Crystal Structure Of Kcsa-Fab-Tba Complex In Tl+
pdb|2DWE|C Chain C, Crystal Structure Of Kcsa-Fab-Tba Complex In Rb+
Length = 103
Score = 35.4 bits (80), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 96 SFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGI 135
++P AL +S+ T +GYG++ P TL G+ VV V GI
Sbjct: 40 TYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGI 79
>pdb|3STL|C Chain C, Kcsa Potassium Channel Mutant Y82c With Cadmium Bound
Length = 103
Score = 35.0 bits (79), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 96 SFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGI 135
++P AL +S+ T +GYG++ P TL G+ VV V GI
Sbjct: 40 TYPRALWWSVETATTVGYGDLCPVTLWGRLVAVVVMVAGI 79
>pdb|3STZ|C Chain C, Kcsa Potassium Channel Mutant Y82c With Nitroxide Spin
Label
Length = 102
Score = 35.0 bits (79), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 96 SFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGI 135
++P AL +S+ T +GYG++ P TL G+ VV V GI
Sbjct: 39 TYPRALWWSVETATTVGYGDLCPVTLWGRLVAVVVMVAGI 78
>pdb|1BL8|A Chain A, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|1BL8|B Chain B, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|1BL8|C Chain C, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|1BL8|D Chain D, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|2QTO|A Chain A, An Anisotropic Model For Potassium Channel Kcsa
pdb|2QTO|B Chain B, An Anisotropic Model For Potassium Channel Kcsa
pdb|2QTO|C Chain C, An Anisotropic Model For Potassium Channel Kcsa
pdb|2QTO|D Chain D, An Anisotropic Model For Potassium Channel Kcsa
Length = 97
Score = 35.0 bits (79), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 96 SFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGI 135
++P AL +S+ T +GYG++ P TL G+ VV V GI
Sbjct: 39 TYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGI 78
>pdb|3OGC|C Chain C, Kcsa E71a Variant In Presence Of Na+
Length = 131
Score = 35.0 bits (79), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 26/40 (65%)
Query: 96 SFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGI 135
++P AL +S++ T +GYG++ P TL G+ VV V GI
Sbjct: 68 TYPRALWWSVATATTVGYGDLYPVTLWGRLVAVVVMVAGI 107
>pdb|1K4D|C Chain C, Potassium Channel Kcsa-Fab Complex In Low Concentration Of
K+
pdb|1K4C|C Chain C, Potassium Channel Kcsa-Fab Complex In High Concentration
Of K+
pdb|1R3I|C Chain C, Potassium Channel Kcsa-Fab Complex In Rb+
pdb|1R3J|C Chain C, Potassium Channel Kcsa-Fab Complex In High Concentration
Of Tl+
pdb|1R3K|C Chain C, Potassium Channel Kcsa-Fab Complex In Low Concentration Of
Tl+
pdb|1R3L|C Chain C, Potassium Channel Kcsa-Fab Complex In Cs+
pdb|2BOB|C Chain C, Potassium Channel Kcsa-Fab Complex In Thallium With
Tetrabutylammonium (Tba)
pdb|2BOC|C Chain C, Potassium Channel Kcsa-Fab Complex In Thallium With
Tetraethylarsonium (Teas)
pdb|2HVJ|C Chain C, Crystal Structure Of Kcsa-fab-tba Complex In Low K+
pdb|2HVK|C Chain C, Crystal Structure Of The Kcsa-Fab-Tba Complex In High K+
pdb|2ITC|C Chain C, Potassium Channel Kcsa-Fab Complex In Sodium Chloride
pdb|2ITD|C Chain C, Potassium Channel Kcsa-Fab Complex In Barium Chloride
pdb|3GB7|C Chain C, Potassium Channel Kcsa-Fab Complex In Li+
pdb|3IGA|C Chain C, Potassium Channel Kcsa-Fab Complex In Li+ And K+
Length = 124
Score = 34.7 bits (78), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 96 SFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGI 135
++P AL +S+ T +GYG++ P TL G+ VV V GI
Sbjct: 61 TYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGI 100
>pdb|3PJS|K Chain K, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
pdb|3PJS|L Chain L, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
pdb|3PJS|M Chain M, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
pdb|3PJS|N Chain N, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
Length = 166
Score = 34.7 bits (78), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 96 SFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGI 135
++P AL +S+ T +GYG++ P TL G+ VV V GI
Sbjct: 67 TYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGI 106
>pdb|3HPL|C Chain C, Kcsa E71h-F103a Mutant In The Closed State
Length = 124
Score = 34.7 bits (78), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 96 SFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGI 135
++P AL +S+ T +GYG++ P TL G+ VV V GI
Sbjct: 61 TYPRALWWSVHTATTVGYGDLYPVTLWGRCVAVVVMVAGI 100
>pdb|2JK5|C Chain C, Potassium Channel Kcsa In Complex With Tetrabutylammonium
In High K
pdb|2W0F|C Chain C, Potassium Channel Kcsa-Fab Complex With Tetraoctylammonium
Length = 124
Score = 34.7 bits (78), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 96 SFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGI 135
++P AL +S+ T +GYG++ P TL G+ VV V GI
Sbjct: 61 TYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGI 100
>pdb|1JVM|A Chain A, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
pdb|1JVM|B Chain B, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
pdb|1JVM|C Chain C, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
pdb|1JVM|D Chain D, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
Length = 125
Score = 34.7 bits (78), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 96 SFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGI 135
++P AL +S+ T +GYG++ P TL G+ VV V GI
Sbjct: 61 TYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGI 100
>pdb|1J95|A Chain A, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
pdb|1J95|B Chain B, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
pdb|1J95|C Chain C, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
pdb|1J95|D Chain D, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
Length = 125
Score = 34.7 bits (78), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 96 SFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGI 135
++P AL +S+ T +GYG++ P TL G+ VV V GI
Sbjct: 61 TYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGI 100
>pdb|3F5W|C Chain C, Kcsa Potassium Channel In The Open-Inactivated State With
32 A Opening At T112
pdb|3F7V|C Chain C, Kcsa Potassium Channel In The Open-Inactivated State With
23 A Opening At T112
pdb|3F7Y|C Chain C, Kcsa Potassium Channel In The Partially Open State With 17
A Opening At T112
pdb|3FB5|C Chain C, Kcsa Potassium Channel In The Partially Open State With
14.5 A Opening At T112
pdb|3FB6|C Chain C, Kcsa Potassium Channel In The Partially Open State With 16
A Opening At T112
pdb|3FB8|C Chain C, Kcsa Potassium Channel In The Open-Conductive State With
20 At T112 In The Presence Of Rb+ Ion
pdb|3FB7|C Chain C, Open Kcsa Potassium Channel In The Presence Of Rb+ Ion
Length = 104
Score = 34.7 bits (78), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 96 SFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGI 135
++P AL +S+ T +GYG++ P TL G+ VV V GI
Sbjct: 41 TYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGI 80
>pdb|3IFX|A Chain A, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
pdb|3IFX|B Chain B, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
pdb|3IFX|C Chain C, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
pdb|3IFX|D Chain D, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
Length = 129
Score = 34.3 bits (77), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 96 SFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGI 135
++P AL +S+ T +GYG++ P TL G+ VV V GI
Sbjct: 61 TYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGI 100
>pdb|2Q67|A Chain A, Crystal Structure Of Nak Channel D66a Mutant
pdb|2Q67|B Chain B, Crystal Structure Of Nak Channel D66a Mutant
Length = 114
Score = 34.3 bits (77), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 9/64 (14%)
Query: 195 TGTVMFAEWENWPILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLG 254
+GT+ ++ E +D+ YF V +L +G G+F P + G I +Y+ +G
Sbjct: 37 SGTIFYSTVEGLRPIDALYFSVVTLTTVGAGNFSPQTDF-----GK----IFTILYIFIG 87
Query: 255 MGLI 258
+GL+
Sbjct: 88 IGLV 91
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 100 ALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPL 137
AL FS+ T +G GN P+T GK T++Y GI L
Sbjct: 53 ALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGL 90
>pdb|3E83|A Chain A, Crystal Structure Of The The Open Nak Channel Pore
pdb|3E83|B Chain B, Crystal Structure Of The The Open Nak Channel Pore
pdb|3E86|A Chain A, High Resolution Crystal Structure Of The Open Nak Channel
Pore
pdb|3E86|B Chain B, High Resolution Crystal Structure Of The Open Nak Channel
Pore
pdb|3E89|A Chain A, Crystal Structure Of The The Open Nak Channel-Low Na+
Complex
pdb|3E89|B Chain B, Crystal Structure Of The The Open Nak Channel-Low Na+
Complex
pdb|3E8B|A Chain A, Crystal Structure Of The The Open Nak Channel- Rb+ Complex
pdb|3E8B|B Chain B, Crystal Structure Of The The Open Nak Channel- Rb+ Complex
pdb|3E8F|A Chain A, Crystal Structure Of The The Open Nak Channel- K+BA2+
pdb|3E8F|B Chain B, Crystal Structure Of The The Open Nak Channel- K+BA2+
pdb|3E8G|A Chain A, Crystal Structure Of The The Open Nak Channel-Na+CA2+
COMPLEX
pdb|3E8G|B Chain B, Crystal Structure Of The The Open Nak Channel-Na+CA2+
COMPLEX
pdb|3E8H|A Chain A, Crystal Structure Of The The Open Nak Channel-K+ Complex
pdb|3E8H|B Chain B, Crystal Structure Of The The Open Nak Channel-K+ Complex
Length = 96
Score = 34.3 bits (77), Expect = 0.093, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 100 ALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPL 137
AL FS+ T +G GN P+T GK T++Y GI L
Sbjct: 35 ALYFSVVTLTTVGDGNFSPQTDFGKIFTILYIFIGIGL 72
Score = 33.5 bits (75), Expect = 0.14, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 9/64 (14%)
Query: 195 TGTVMFAEWENWPILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLG 254
+GT+ ++ E +D+ YF V +L +G G+F P + I +Y+ +G
Sbjct: 19 SGTIFYSTVEGLRPIDALYFSVVTLTTVGDGNFSPQTD---------FGKIFTILYIFIG 69
Query: 255 MGLI 258
+GL+
Sbjct: 70 IGLV 73
>pdb|3OR7|C Chain C, On The Structural Basis Of Modal Gating Behavior In
K+channels - E71i
Length = 103
Score = 34.3 bits (77), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 96 SFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGI 135
++P AL +S+ T +GYG++ P TL G+ VV V GI
Sbjct: 40 TYPRALWWSVITATTVGYGDLYPVTLWGRCVAVVVMVAGI 79
>pdb|1S5H|C Chain C, Potassium Channel Kcsa-Fab Complex T75c Mutant In K+
Length = 124
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 96 SFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGI 135
++P AL +S+ T +GYG++ P TL G+ VV V GI
Sbjct: 61 TYPRALWWSVETATCVGYGDLYPVTLWGRLVAVVVMVAGI 100
>pdb|2Q68|A Chain A, Crystal Structure Of Nak Channel D66a, S70e Double Mutants
pdb|2Q68|B Chain B, Crystal Structure Of Nak Channel D66a, S70e Double Mutants
Length = 114
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 9/64 (14%)
Query: 195 TGTVMFAEWENWPILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLG 254
+GT+ ++ E +D+ YF V +L +G G+F P + G I +Y+ +G
Sbjct: 37 SGTIFYSTVEGLRPIDALYFSVVTLTTVGAGNFEPQTDF-----GK----IFTILYIFIG 87
Query: 255 MGLI 258
+GL+
Sbjct: 88 IGLV 91
Score = 32.0 bits (71), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 100 ALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPL 137
AL FS+ T +G GN P+T GK T++Y GI L
Sbjct: 53 ALYFSVVTLTTVGAGNFEPQTDFGKIFTILYIFIGIGL 90
>pdb|2Q6A|A Chain A, Crystal Structure Of Nak Channel D66e Mutant
pdb|2Q6A|B Chain B, Crystal Structure Of Nak Channel D66e Mutant
Length = 114
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 9/64 (14%)
Query: 195 TGTVMFAEWENWPILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLG 254
+GT+ ++ E +D+ YF V +L +G G+F P + G I +Y+ +G
Sbjct: 37 SGTIFYSTVEGLRPIDALYFSVVTLTTVGEGNFSPQTDF-----GK----IFTILYIFIG 87
Query: 255 MGLI 258
+GL+
Sbjct: 88 IGLV 91
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 100 ALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPL 137
AL FS+ T +G GN P+T GK T++Y GI L
Sbjct: 53 ALYFSVVTLTTVGEGNFSPQTDFGKIFTILYIFIGIGL 90
>pdb|2AHY|A Chain A, Na+ Complex Of The Nak Channel
pdb|2AHY|B Chain B, Na+ Complex Of The Nak Channel
pdb|2AHZ|A Chain A, K+ Complex Of The Nak Channel
pdb|2AHZ|B Chain B, K+ Complex Of The Nak Channel
Length = 110
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 9/64 (14%)
Query: 195 TGTVMFAEWENWPILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLG 254
+GT+ ++ E +D+ YF V +L +G G+F P + I +Y+ +G
Sbjct: 37 SGTIFYSTVEGLRPIDALYFSVVTLTTVGDGNFSPQTD---------FGKIFTILYIFIG 87
Query: 255 MGLI 258
+GL+
Sbjct: 88 IGLV 91
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 100 ALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPL 137
AL FS+ T +G GN P+T GK T++Y GI L
Sbjct: 53 ALYFSVVTLTTVGDGNFSPQTDFGKIFTILYIFIGIGL 90
>pdb|2Q69|A Chain A, Crystal Structure Of Nak Channel D66n Mutant
pdb|2Q69|B Chain B, Crystal Structure Of Nak Channel D66n Mutant
Length = 114
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 9/64 (14%)
Query: 195 TGTVMFAEWENWPILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLG 254
+GT+ ++ E +D+ YF V +L +G G+F P + G I +Y+ +G
Sbjct: 37 SGTIFYSTVEGLRPIDALYFSVVTLTTVGNGNFSPQTDF-----GK----IFTILYIFIG 87
Query: 255 MGLI 258
+GL+
Sbjct: 88 IGLV 91
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 100 ALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPL 137
AL FS+ T +G GN P+T GK T++Y GI L
Sbjct: 53 ALYFSVVTLTTVGNGNFSPQTDFGKIFTILYIFIGIGL 90
>pdb|4H33|A Chain A, Crystal Structure Of A Voltage-gated K+ Channel Pore
Module In A Closed State In Lipid Membranes, Tetragonal
Crystal Form
pdb|4H37|A Chain A, Crystal Structure Of A Voltage-gated K+ Channel Pore
Domain In A Closed State In Lipid Membranes
pdb|4H37|B Chain B, Crystal Structure Of A Voltage-gated K+ Channel Pore
Domain In A Closed State In Lipid Membranes
Length = 137
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 28/43 (65%)
Query: 93 EIWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGI 135
EI ++P AL +++ T +GYG++VP T +G+ + +FGI
Sbjct: 40 EINNYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGI 82
>pdb|3LNM|B Chain B, F233w Mutant Of The Kv2.1 Paddle-Kv1.2 Chimera Channel
pdb|3LNM|D Chain D, F233w Mutant Of The Kv2.1 Paddle-Kv1.2 Chimera Channel
Length = 514
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 6/91 (6%)
Query: 96 SFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVLAQSFRW 155
S P A +++ T +GYG+MVP T+ GK + A+ G+ L V+ +F +
Sbjct: 375 SIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPV----PVIVSNFNY 430
Query: 156 LYTWLYECTMEDRRSEGEVSPRIIVPSTACL 186
Y E + + + SP+I PS+ L
Sbjct: 431 FYHRETEGEEQAQYLQVTSSPKI--PSSPDL 459
>pdb|2R9R|B Chain B, Shaker Family Voltage Dependent Potassium Channel
(Kv1.2-Kv2.1 Paddle Chimera Channel) In Association With
Beta Subunit
pdb|2R9R|H Chain H, Shaker Family Voltage Dependent Potassium Channel
(Kv1.2-Kv2.1 Paddle Chimera Channel) In Association With
Beta Subunit
Length = 514
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 6/91 (6%)
Query: 96 SFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVLAQSFRW 155
S P A +++ T +GYG+MVP T+ GK + A+ G+ L V+ +F +
Sbjct: 375 SIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPV----PVIVSNFNY 430
Query: 156 LYTWLYECTMEDRRSEGEVSPRIIVPSTACL 186
Y E + + + SP+I PS+ L
Sbjct: 431 FYHRETEGEEQAQYLQVTSSPKI--PSSPDL 459
>pdb|2A79|B Chain B, Mammalian Shaker Kv1.2 Potassium Channel- Beta Subunit
Complex
Length = 499
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 13/78 (16%)
Query: 96 SFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVLAQSFRW 155
S P A +++ T +GYG+MVP T+ GK + A+ G+ L V+ +F +
Sbjct: 360 SIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPV----PVIVSNFNY 415
Query: 156 LYTWLYECTMEDRRSEGE 173
Y R +EGE
Sbjct: 416 FY---------HRETEGE 424
>pdb|3LUT|B Chain B, A Structural Model For The Full-Length Shaker Potassium
Channel Kv1.2
Length = 499
Score = 31.2 bits (69), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 13/78 (16%)
Query: 96 SFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVLAQSFRW 155
S P A +++ T +GYG+MVP T+ GK + A+ G+ L V+ +F +
Sbjct: 360 SIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPV----PVIVSNFNY 415
Query: 156 LYTWLYECTMEDRRSEGE 173
Y R +EGE
Sbjct: 416 FY---------HRETEGE 424
>pdb|1LNQ|A Chain A, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|B Chain B, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|C Chain C, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|D Chain D, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|E Chain E, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|F Chain F, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|G Chain G, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|H Chain H, Crystal Structure Of Mthk At 3.3 A
Length = 336
Score = 30.8 bits (68), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 176 PRII-VPSTACLWVLGGYVATGTV--MFAEWENWPILDSCYFCVTSLCKIGIGDFVP 229
PR++ VP+T L ++ + GT F E E+W + S Y+ ++ +G GD+ P
Sbjct: 13 PRVLKVPATRILLLVLAVIIYGTAGFHFIEGESWTV--SLYWTFVTIATVGYGDYSP 67
>pdb|3RBZ|A Chain A, Mthk Channel, Ca2+-Bound
pdb|3RBZ|B Chain B, Mthk Channel, Ca2+-Bound
pdb|3RBZ|C Chain C, Mthk Channel, Ca2+-Bound
pdb|3RBZ|D Chain D, Mthk Channel, Ca2+-Bound
Length = 340
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 176 PRII-VPSTACLWVLGGYVATGTV--MFAEWENWPILDSCYFCVTSLCKIGIGDFVP 229
PR++ VP+T L ++ + GT F E E+W + S Y+ ++ +G GD+ P
Sbjct: 13 PRVLKVPATRILLLVLAVIIYGTAGFHFIEGESWTV--SLYWTFVTIATVGYGDYSP 67
>pdb|2K1E|A Chain A, Nmr Studies Of A Channel Protein Without Membranes:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2K1E|B Chain B, Nmr Studies Of A Channel Protein Without Membranes:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2K1E|C Chain C, Nmr Studies Of A Channel Protein Without Membranes:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2K1E|D Chain D, Nmr Studies Of A Channel Protein Without Membranes:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2KB1|A Chain A, Nmr Studies Of A Channel Protein Without Membrane:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2KB1|B Chain B, Nmr Studies Of A Channel Protein Without Membrane:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2KB1|C Chain C, Nmr Studies Of A Channel Protein Without Membrane:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2KB1|D Chain D, Nmr Studies Of A Channel Protein Without Membrane:
Structure And Dynamics Of Water-Solubilized Kcsa
Length = 103
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 96 SFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVL 140
S+P A+ +S+ T +GYG+ P T G+ GI ++ L
Sbjct: 40 SYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFAL 84
>pdb|2NLJ|C Chain C, Potassium Channel Kcsa(M96v)-Fab Complex In Kcl
Length = 124
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 96 SFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGI 135
++P AL +S+ T +GYG++ P TL G+ VV V GI
Sbjct: 61 TYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVVVAGI 100
>pdb|2IH1|C Chain C, Ion Selectivity In A Semi-Synthetic K+ Channel Locked In
The Conductive Conformation
pdb|2IH3|C Chain C, Ion Selectivity In A Semi-Synthetic K+ Channel Locked In
The Conductive Conformation
Length = 122
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 96 SFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGI 135
++P AL ++ T + YG++ P TL G+ VV V GI
Sbjct: 61 TYPRALWWACETATTVXYGDLYPVTLWGRLVAVVVMVAGI 100
>pdb|4HYO|A Chain A, Crystal Structure Of Mthk Pore
pdb|4HYO|B Chain B, Crystal Structure Of Mthk Pore
pdb|4HYO|C Chain C, Crystal Structure Of Mthk Pore
pdb|4HYO|D Chain D, Crystal Structure Of Mthk Pore
pdb|4HYO|E Chain E, Crystal Structure Of Mthk Pore
pdb|4HYO|F Chain F, Crystal Structure Of Mthk Pore
pdb|4HYO|G Chain G, Crystal Structure Of Mthk Pore
pdb|4HYO|H Chain H, Crystal Structure Of Mthk Pore
pdb|4HZ3|D Chain D, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|C Chain C, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|A Chain A, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|B Chain B, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|E Chain E, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|F Chain F, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|G Chain G, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|H Chain H, Mthk Pore Crystallized In Presence Of Tbsb
Length = 91
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 176 PRII-VPSTACLWVLGGYVATGTV--MFAEWENWPILDSCYFCVTSLCKIGIGDFVP 229
PR++ VP+T L ++ + GT F E E+W + S Y+ ++ +G GD+ P
Sbjct: 3 PRVLKVPATRILLLVLAVIIYGTAGFHFIEGESWTV--SLYWTFVTIATVGYGDYSP 57
>pdb|1H54|A Chain A, Maltose Phosphorylase From Lactobacillus Brevis
pdb|1H54|B Chain B, Maltose Phosphorylase From Lactobacillus Brevis
Length = 754
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 60 KTSWQNACDETLLIYQKNLTHQVK-DGYDGRTVHEIWSFPA 99
KT WQ+ D L Y K+L V+ DG+ + + + S PA
Sbjct: 531 KTKWQDIVDRMYLPYDKDLNIFVQHDGFLDKDIEPVSSIPA 571
>pdb|1P7B|A Chain A, Crystal Structure Of An Inward Rectifier Potassium Channel
pdb|1P7B|B Chain B, Crystal Structure Of An Inward Rectifier Potassium Channel
pdb|2WLL|B Chain B, Potassium Channel From Burkholderia Pseudomallei
Length = 333
Score = 27.7 bits (60), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 97 FPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGI 135
F A FS+ +GYG+M P+T+ A + G+
Sbjct: 97 FVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGM 135
>pdb|2WLL|A Chain A, Potassium Channel From Burkholderia Pseudomallei
Length = 333
Score = 27.7 bits (60), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 97 FPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGI 135
F A FS+ +GYG+M P+T+ A + G+
Sbjct: 97 FVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGM 135
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.141 0.454
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,291,797
Number of Sequences: 62578
Number of extensions: 379726
Number of successful extensions: 934
Number of sequences better than 100.0: 60
Number of HSP's better than 100.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 851
Number of HSP's gapped (non-prelim): 91
length of query: 302
length of database: 14,973,337
effective HSP length: 98
effective length of query: 204
effective length of database: 8,840,693
effective search space: 1803501372
effective search space used: 1803501372
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (24.3 bits)