Query psy12868
Match_columns 302
No_of_seqs 238 out of 2190
Neff 7.4
Searched_HMMs 46136
Date Fri Aug 16 21:48:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12868.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12868hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4404|consensus 100.0 6.2E-52 1.3E-56 374.7 18.8 243 3-272 8-250 (350)
2 KOG1418|consensus 100.0 3E-40 6.5E-45 316.6 14.9 261 2-266 17-300 (433)
3 PF07885 Ion_trans_2: Ion chan 99.5 3.7E-15 8E-20 111.7 3.1 73 189-270 3-78 (79)
4 PF07885 Ion_trans_2: Ion chan 99.5 8.6E-15 1.9E-19 109.7 3.6 59 92-150 20-78 (79)
5 KOG3713|consensus 99.3 7.5E-12 1.6E-16 120.4 8.3 97 8-160 345-441 (477)
6 KOG4404|consensus 99.3 1.6E-11 3.5E-16 112.4 8.9 94 180-282 7-146 (350)
7 PRK10537 voltage-gated potassi 99.1 1E-10 2.2E-15 112.8 7.3 80 206-295 167-247 (393)
8 KOG3713|consensus 99.0 5.8E-10 1.3E-14 107.5 7.7 83 188-279 347-440 (477)
9 KOG1418|consensus 98.9 1.4E-09 3.1E-14 104.2 6.2 65 204-277 112-176 (433)
10 KOG1419|consensus 98.8 3.3E-09 7.2E-14 103.1 4.9 62 91-152 264-325 (654)
11 KOG0501|consensus 98.8 7.9E-09 1.7E-13 101.1 6.7 112 41-152 363-479 (971)
12 PRK10537 voltage-gated potassi 98.8 1.4E-08 3E-13 98.0 7.4 56 93-148 165-220 (393)
13 KOG1419|consensus 98.8 6.4E-09 1.4E-13 101.2 4.7 61 206-275 268-328 (654)
14 KOG1545|consensus 98.7 1.3E-08 2.8E-13 94.8 4.1 53 93-145 390-442 (507)
15 PLN03192 Voltage-dependent pot 98.6 4.4E-08 9.5E-13 103.1 5.6 56 97-152 251-306 (823)
16 KOG1545|consensus 98.5 1.4E-07 3.1E-12 87.9 4.9 56 206-270 392-447 (507)
17 PLN03192 Voltage-dependent pot 98.4 2.5E-07 5.4E-12 97.4 6.2 54 208-270 251-304 (823)
18 KOG1420|consensus 98.3 7.5E-07 1.6E-11 87.4 4.9 70 191-269 259-341 (1103)
19 KOG1420|consensus 98.1 1.4E-06 3E-11 85.5 3.2 58 92-149 284-341 (1103)
20 KOG4390|consensus 98.1 2.5E-07 5.4E-12 87.0 -2.5 65 90-154 350-414 (632)
21 KOG0498|consensus 98.1 4.2E-06 9.1E-11 85.8 5.1 59 96-154 294-352 (727)
22 KOG0498|consensus 98.0 2.3E-06 5E-11 87.7 1.3 56 208-272 295-350 (727)
23 KOG3684|consensus 97.9 1.2E-05 2.6E-10 77.3 5.2 82 180-270 252-341 (489)
24 KOG3684|consensus 97.9 1.7E-05 3.7E-10 76.3 5.7 54 96-149 287-340 (489)
25 KOG4390|consensus 97.7 5.2E-06 1.1E-10 78.3 -1.7 54 207-269 356-409 (632)
26 KOG3193|consensus 97.6 0.00012 2.7E-09 71.8 6.2 28 206-233 216-243 (1087)
27 PF01007 IRK: Inward rectifier 97.2 0.00011 2.3E-09 69.7 1.1 52 95-146 83-136 (336)
28 KOG0501|consensus 97.2 0.00039 8.4E-09 68.9 4.5 55 207-270 423-477 (971)
29 PF01007 IRK: Inward rectifier 96.5 0.0026 5.6E-08 60.4 4.1 58 207-271 84-141 (336)
30 KOG3193|consensus 95.2 0.016 3.5E-07 57.4 3.2 57 92-148 213-269 (1087)
31 KOG0500|consensus 95.2 0.042 9.1E-07 53.9 6.0 75 210-295 186-273 (536)
32 KOG0500|consensus 94.0 0.047 1E-06 53.6 3.3 54 98-152 185-238 (536)
33 PF00520 Ion_trans: Ion transp 92.2 0.075 1.6E-06 44.8 1.7 49 95-143 144-198 (200)
34 KOG3827|consensus 91.7 0.19 4.1E-06 48.0 3.8 50 95-144 111-162 (400)
35 PF00520 Ion_trans: Ion transp 91.6 0.14 3.1E-06 43.0 2.8 55 207-265 145-200 (200)
36 TIGR00933 2a38 potassium uptak 90.9 0.099 2.2E-06 50.6 1.2 40 95-134 230-271 (390)
37 TIGR00933 2a38 potassium uptak 90.9 0.29 6.2E-06 47.4 4.3 128 94-226 13-147 (390)
38 COG0168 TrkG Trk-type K+ trans 87.3 0.54 1.2E-05 47.1 3.4 83 182-265 399-482 (499)
39 KOG3827|consensus 85.1 1.8 3.8E-05 41.6 5.4 57 206-269 111-167 (400)
40 PRK10750 potassium transporter 82.4 1 2.2E-05 45.0 2.7 126 97-225 305-439 (483)
41 PF02386 TrkH: Cation transpor 81.3 0.24 5.1E-06 47.3 -2.1 135 94-229 174-316 (354)
42 PF00060 Lig_chan: Ligand-gate 76.8 1.1 2.3E-05 36.4 0.8 57 94-151 42-98 (148)
43 KOG0499|consensus 76.1 3.3 7.1E-05 42.0 4.0 55 205-269 401-455 (815)
44 KOG0499|consensus 76.0 1.6 3.4E-05 44.2 1.8 56 96-152 403-458 (815)
45 PRK05482 potassium-transportin 75.4 1.6 3.5E-05 44.1 1.8 38 97-134 329-368 (559)
46 KOG4440|consensus 57.7 4.6 0.0001 41.2 0.9 59 91-149 608-666 (993)
47 PRK10750 potassium transporter 57.0 11 0.00024 37.7 3.5 121 95-225 96-224 (483)
48 KOG3676|consensus 53.7 80 0.0017 33.4 9.0 61 207-271 586-649 (782)
49 COG4709 Predicted membrane pro 52.9 1.6E+02 0.0034 25.8 10.9 18 126-143 88-105 (195)
50 PF04694 Corona_3: Coronavirus 48.5 12 0.00026 25.5 1.5 22 207-228 16-46 (60)
51 TIGR00870 trp transient-recept 40.5 1.3E+02 0.0029 31.4 8.6 47 220-270 569-616 (743)
52 TIGR00934 2a38euk potassium up 37.2 41 0.00089 35.7 4.1 23 7-29 587-609 (800)
53 PF06305 DUF1049: Protein of u 36.1 1.5E+02 0.0032 20.6 6.1 14 270-283 47-60 (68)
54 PRK09609 hypothetical protein; 36.0 2.2E+02 0.0049 26.8 8.3 126 12-142 91-225 (312)
55 PLN03223 Polycystin cation cha 32.0 1.1E+02 0.0024 34.6 6.3 26 245-270 1398-1423(1634)
56 KOG3599|consensus 30.6 3.1E+02 0.0067 29.4 9.3 27 120-146 544-570 (798)
57 COG0168 TrkG Trk-type K+ trans 30.2 1E+02 0.0022 31.0 5.5 37 98-134 91-127 (499)
58 cd00930 Cyt_c_Oxidase_VIII Cyt 29.7 71 0.0015 21.0 2.8 23 5-27 17-39 (43)
59 PF00060 Lig_chan: Ligand-gate 29.5 43 0.00092 26.8 2.3 54 207-270 44-97 (148)
60 COG3772 Phage-related lysozyme 27.6 31 0.00067 29.1 1.1 17 109-125 33-49 (152)
61 PRK06771 hypothetical protein; 26.9 2.9E+02 0.0062 21.3 6.2 40 248-287 7-46 (93)
62 PF06624 RAMP4: Ribosome assoc 26.8 61 0.0013 23.1 2.3 24 180-203 35-58 (63)
63 PF04835 Pox_A9: A9 protein co 25.1 67 0.0015 22.1 2.2 26 5-30 27-52 (54)
64 PF07077 DUF1345: Protein of u 24.4 69 0.0015 27.6 2.7 51 92-142 128-178 (180)
65 KOG1054|consensus 23.4 38 0.00083 34.7 1.0 58 91-149 590-647 (897)
66 KOG0721|consensus 21.3 2E+02 0.0044 25.7 5.0 73 126-203 18-90 (230)
67 COG3114 CcmD Heme exporter pro 21.0 3.3E+02 0.007 19.6 5.5 23 248-270 18-40 (67)
68 KOG3491|consensus 20.5 2.3E+02 0.005 19.9 4.1 24 181-204 36-59 (65)
69 KOG2736|consensus 20.3 1.2E+02 0.0026 29.4 3.6 26 243-268 345-370 (406)
No 1
>KOG4404|consensus
Probab=100.00 E-value=6.2e-52 Score=374.71 Aligned_cols=243 Identities=23% Similarity=0.389 Sum_probs=193.0
Q ss_pred chhHHHHHHHHHHHHHHHhHHHhhcCCchhhHHHHHHHHHHHHHHHHhhhhhccccCccchhhhHHHHHHHHHHHHHHHH
Q psy12868 3 TQVGVGGLIVGYAVVGAFSFSWIETKEERPQIARVEDLTNKTVLKLWEITVYYNIMNKTSWQNACDETLLIYQKNLTHQV 82 (302)
Q Consensus 3 ~h~~l~~llv~Y~~~GA~iF~~lE~~~e~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~ 82 (302)
+-+.|+++.+.|+++||.+|.+||+++|...++++++.+++ ...++|..+ +.+++++..+.++.
T Consensus 8 R~l~Livct~tYLLvGAaVFdaLEse~E~~~r~~l~~~~~~-------~~~kyn~s~---------~d~r~~er~i~~s~ 71 (350)
T KOG4404|consen 8 RTLLLIVCTFTYLLVGAAVFDALESENEARERERLERRLAN-------LKRKYNLSE---------EDYRELERVILKSE 71 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHH-------HHHhhCCCH---------HHHHHHHHHHHhcC
Confidence 34678999999999999999999999999887666655544 344666443 33444444444332
Q ss_pred HcCCCCCCCccCCChhhhhHhhheeEEeeecceeccCCccchhhHHHHHHHhHHHHHHHHHHhhHHHHHHHHHHHHHHhh
Q psy12868 83 KDGYDGRTVHEIWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVLAQSFRWLYTWLYE 162 (302)
Q Consensus 83 ~~~~~~~~~~~~w~~~~a~~f~~t~~tTiGyG~i~P~T~~gr~~~i~y~~~Gipl~~~~l~~~g~~l~~~~~~~~~~~~~ 162 (302)
. ....++|+|++||||+.|++||||||+.+|.|.+||+|||+|+++|||+.+++++++|+.+....+++.++.++
T Consensus 72 p-----h~ag~qWkF~GaFYFa~TVItTIGyGhstP~T~~GK~Fcm~Yal~Gipl~lvmFqs~gERlnt~~ayil~~~r~ 146 (350)
T KOG4404|consen 72 P-----HKAGPQWKFAGAFYFATTVITTIGYGHSTPSTDGGKAFCMFYALVGIPLTLVMFQSIGERLNTFVAYILRRCRR 146 (350)
T ss_pred c-----cccccccccCcceEEEEEEEeeeccCCCCCCCcCceehhhhHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 24567899999999999999999999999999999999999999999999999999999999999988888877
Q ss_pred hcccCcCCCCCCCCeeeeehhhHHHHHHHHHhhhhhhhhccccCCcccceeeeeeeeecccccccccCCCcCCCcCCcch
Q psy12868 163 CTMEDRRSEGEVSPRIIVPSTACLWVLGGYVATGTVMFAEWENWPILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHI 242 (302)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iga~if~~~e~w~~~da~Yf~fitltTIGfGDivp~~~~~~~~~~~~~ 242 (302)
+..+++.+.. .. -.+.+.+..-++.++.||++|+..|+|+|+||+||||||+|||||||+|+..+.+. .+.++.
T Consensus 147 ~~~~r~~~~S--~~---~l~~i~~~~~~~~i~~gaa~fs~~E~Wsyfds~YyCFITltTIGFGDyValQ~~~a-lq~qpl 220 (350)
T KOG4404|consen 147 RLGRRRWDVS--VY---NLVLILFTACILLICCGAAMFSSVEGWSYFDSYYYCFITLTTIGFGDYVALQQDAA-LQSQPL 220 (350)
T ss_pred HhccccCCCc--HH---HHHHHHHHHHHHHHHhhHHHhhcccCcchhhhhheeeeeeeeccccchhhhcchhh-hhCCCc
Confidence 6665532211 00 01112223344567899999999999999999999999999999999999987442 345689
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12868 243 KLIINFIYLLLGMGLIAMCFDLMREDVRVK 272 (302)
Q Consensus 243 ~~~~~~~~il~Gl~l~~~~~~~i~~~~~~~ 272 (302)
|+.+.++||++|++.++.++|++.-.+..-
T Consensus 221 Yv~~sf~fIL~Gl~vi~a~~NllvLrf~t~ 250 (350)
T KOG4404|consen 221 YVFFSFVFILLGLCVIYALLNLLVLRFMTM 250 (350)
T ss_pred eehHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999987655433
No 2
>KOG1418|consensus
Probab=100.00 E-value=3e-40 Score=316.63 Aligned_cols=261 Identities=27% Similarity=0.401 Sum_probs=179.1
Q ss_pred CchhHHHHHHHHHHHHHHHhHHHhhcCCchhh-HHHHHHHHHHHHHHHHhhhhhccccCccchhhhHHHHHHHHHHHHH-
Q psy12868 2 CTQVGVGGLIVGYAVVGAFSFSWIETKEERPQ-IARVEDLTNKTVLKLWEITVYYNIMNKTSWQNACDETLLIYQKNLT- 79 (302)
Q Consensus 2 ~~h~~l~~llv~Y~~~GA~iF~~lE~~~e~~~-~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~- 79 (302)
..|+.++.+++.|++.||.+|+.+|.++|.+. .......+.+..++.+....+........+. ....+.+.....
T Consensus 17 ~~~~~l~~~~~~y~~~ga~~f~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 93 (433)
T KOG1418|consen 17 IRHVLLLLLVLLYLVLGAFIFQALERPKELELKQRELGLLLSNFILRIWRCIDELVLEEESRTK---AHKQKASVLLALL 93 (433)
T ss_pred cchhhHHHHHHHHHhhHHHHHHHhcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhh
Confidence 57889999999999999999999999999888 4544444444444433221111100000000 000001111000
Q ss_pred HHHHc-----CCCCCCCccCCChhhhhHhhheeEEeeecceeccCCccchhhHHHHHHHhHHHHHHHHHHhhHHHHHHHH
Q psy12868 80 HQVKD-----GYDGRTVHEIWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVLAQSFR 154 (302)
Q Consensus 80 ~~~~~-----~~~~~~~~~~w~~~~a~~f~~t~~tTiGyG~i~P~T~~gr~~~i~y~~~Gipl~~~~l~~~g~~l~~~~~ 154 (302)
..... +.........|+|++|+|||+|++|||||||++|.|.+||++||+|+++|||+++++++++|++++..++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~W~f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~~l~~~~~ 173 (433)
T KOG1418|consen 94 LGVANSALSLEGDESPDTQQWSFSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILADIGKFLADSLR 173 (433)
T ss_pred hhcchhhcccccccCCCCcceecchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 00000 1112234567999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHH---Hhhhc---ccCcC-------CCCCCCCe---eeeehhhHHHHHHHHHhhhhhhhhccccCCcccceeeeeee
Q psy12868 155 WLYTW---LYECT---MEDRR-------SEGEVSPR---IIVPSTACLWVLGGYVATGTVMFAEWENWPILDSCYFCVTS 218 (302)
Q Consensus 155 ~~~~~---~~~~~---~~~~~-------~~~~~~~~---~~~~~~~~l~~~~~~~~iga~if~~~e~w~~~da~Yf~fit 218 (302)
.++++ ..+.. ..... +....... ...+....+.++++|+..|+.++..+|+|+|++|+||+|+|
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~w~f~~~~Yf~fis 253 (433)
T KOG1418|consen 174 KLYRRRHVELQRDRIRSNLRRSIGLRNRSVELGIELLDELRFILLLLLGISLVYLSPGSLLFSLQEQWSFIEAFYFSFIS 253 (433)
T ss_pred HHHHHhhhhhhhhhhhhhhhccccchhcccccchhhccCcceehhhhheeeEEEecccceeeeceeceeeEeeeeEEEEE
Confidence 87752 11110 00000 00001111 24566666677788899999999999999999999999999
Q ss_pred eecccccccccCCCcCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHH
Q psy12868 219 LCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLGMGLIAMCFDLMR 266 (302)
Q Consensus 219 ltTIGfGDivp~~~~~~~~~~~~~~~~~~~~~il~Gl~l~~~~~~~i~ 266 (302)
+|||||||++|.+..+... ....+......++++|++.++++.....
T Consensus 254 ltTIG~GD~vp~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 300 (433)
T KOG1418|consen 254 LTTIGFGDIVPRTLLGRFR-REELVDPLASVWILSGLALLALVLLGPD 300 (433)
T ss_pred eeeecCCccccCCCcceee-ccccccchhHHHHHhhhhHHHHHhhccc
Confidence 9999999999998765210 1112346778999999999999985433
No 3
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=99.53 E-value=3.7e-15 Score=111.75 Aligned_cols=73 Identities=29% Similarity=0.562 Sum_probs=59.6
Q ss_pred HHHHHhhhhhhhhc---cccCCcccceeeeeeeeecccccccccCCCcCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHH
Q psy12868 189 LGGYVATGTVMFAE---WENWPILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLGMGLIAMCFDLM 265 (302)
Q Consensus 189 ~~~~~~iga~if~~---~e~w~~~da~Yf~fitltTIGfGDivp~~~~~~~~~~~~~~~~~~~~~il~Gl~l~~~~~~~i 265 (302)
++.++..|++.+.. .|+|++.||+||+++|+|||||||++|.++.+ ++++.+++++|+.++++.++.+
T Consensus 3 ~~~~l~~~~~~~~~~~~~~~~~~~da~yfs~~t~tTvGyGDi~p~t~~g---------r~~~~~~~~~G~~~~~~~~~~~ 73 (79)
T PF07885_consen 3 LLLVLAFGAIFFYISEGSEKWSFIDALYFSFVTITTVGYGDIVPQTPAG---------RIFTIIYMLIGIFLFALFLSVL 73 (79)
T ss_dssp HHHHHHHHHHHHHHTTSSSTTSHHHHHHHHHHHHTT---SSSSTSSHHH---------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeeeHHHHHHHHHHHhcccCCHHHHHHHHHHHHhcccCCCccCCccch---------HHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667777766 68899999999999999999999999997654 5899999999999999999998
Q ss_pred HHHHH
Q psy12868 266 REDVR 270 (302)
Q Consensus 266 ~~~~~ 270 (302)
.+.+.
T Consensus 74 ~~~l~ 78 (79)
T PF07885_consen 74 ASVLT 78 (79)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 87764
No 4
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=99.51 E-value=8.6e-15 Score=109.73 Aligned_cols=59 Identities=41% Similarity=0.801 Sum_probs=53.0
Q ss_pred ccCCChhhhhHhhheeEEeeecceeccCCccchhhHHHHHHHhHHHHHHHHHHhhHHHH
Q psy12868 92 HEIWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVLA 150 (302)
Q Consensus 92 ~~~w~~~~a~~f~~t~~tTiGyG~i~P~T~~gr~~~i~y~~~Gipl~~~~l~~~g~~l~ 150 (302)
.+.|++.+|+||+++++|||||||+.|.|+.||+++++++++|++++.+.++.+++.+.
T Consensus 20 ~~~~~~~da~yfs~~t~tTvGyGDi~p~t~~gr~~~~~~~~~G~~~~~~~~~~~~~~l~ 78 (79)
T PF07885_consen 20 SEKWSFIDALYFSFVTITTVGYGDIVPQTPAGRIFTIIYMLIGIFLFALFLSVLASVLT 78 (79)
T ss_dssp SSTTSHHHHHHHHHHHHTT---SSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHhcccCCCccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45899999999999999999999999999999999999999999999999999988765
No 5
>KOG3713|consensus
Probab=99.29 E-value=7.5e-12 Score=120.40 Aligned_cols=97 Identities=25% Similarity=0.372 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHhHHHhhcCCchhhHHHHHHHHHHHHHHHHhhhhhccccCccchhhhHHHHHHHHHHHHHHHHHcCCC
Q psy12868 8 GGLIVGYAVVGAFSFSWIETKEERPQIARVEDLTNKTVLKLWEITVYYNIMNKTSWQNACDETLLIYQKNLTHQVKDGYD 87 (302)
Q Consensus 8 ~~llv~Y~~~GA~iF~~lE~~~e~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~ 87 (302)
+++|++|++.|-.+|.++.+-.|+..
T Consensus 345 lglLllfL~~GI~iFStlvY~~Ek~~------------------------------------------------------ 370 (477)
T KOG3713|consen 345 LGLLLLFLAVGIVIFSTLVYFAEKDE------------------------------------------------------ 370 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcC------------------------------------------------------
Confidence 57889999999999999986655422
Q ss_pred CCCCccCCChhhhhHhhheeEEeeecceeccCCccchhhHHHHHHHhHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy12868 88 GRTVHEIWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVLAQSFRWLYTWL 160 (302)
Q Consensus 88 ~~~~~~~w~~~~a~~f~~t~~tTiGyG~i~P~T~~gr~~~i~y~~~Gipl~~~~l~~~g~~l~~~~~~~~~~~ 160 (302)
...+.-|.+-++|||.+|||||||||++|+|..||++...-++.||-++++.++.+-+.+++.+.....+-
T Consensus 371 --~~~~FtSIPa~~WWaiVTMTTVGYGDm~P~T~~Gklvas~cil~GVLvlAlPItiIv~nF~~~y~~~k~~~ 441 (477)
T KOG3713|consen 371 --PDTKFTSIPAGFWWAVVTMTTVGYGDMVPVTVLGKLVASLCILCGVLVLALPITIIVNNFSMYYSELKARE 441 (477)
T ss_pred --CCCCCccccchhheeeEEEeeecccCccccccchHHHHHHHHHHhHHHhhcchHhHhhhHHHHHHHHHHHH
Confidence 01124678899999999999999999999999999999999999999999999999999999887765443
No 6
>KOG4404|consensus
Probab=99.26 E-value=1.6e-11 Score=112.38 Aligned_cols=94 Identities=21% Similarity=0.357 Sum_probs=80.5
Q ss_pred eehhhHHHHHHHHHhhhhhhhhccc----------------------------------------------cCCccccee
Q psy12868 180 VPSTACLWVLGGYVATGTVMFAEWE----------------------------------------------NWPILDSCY 213 (302)
Q Consensus 180 ~~~~~~l~~~~~~~~iga~if~~~e----------------------------------------------~w~~~da~Y 213 (302)
+...+..++.+.|+++||++|..+| +|+|.-|||
T Consensus 7 vR~l~Livct~tYLLvGAaVFdaLEse~E~~~r~~l~~~~~~~~~kyn~s~~d~r~~er~i~~s~ph~ag~qWkF~GaFY 86 (350)
T KOG4404|consen 7 VRTLLLIVCTFTYLLVGAAVFDALESENEARERERLERRLANLKRKYNLSEEDYRELERVILKSEPHKAGPQWKFAGAFY 86 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCccccccccccCcceE
Confidence 3444556778899999999999887 199999999
Q ss_pred eeeeeeecccccccccCCCcCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12868 214 FCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLGMGLIAMCFDLMREDVRVKVRNLKTDIGL 282 (302)
Q Consensus 214 f~fitltTIGfGDivp~~~~~~~~~~~~~~~~~~~~~il~Gl~l~~~~~~~i~~~~~~~~~~~~~~~~~ 282 (302)
|+.+.+||||||.-.|.++.|+ +|+++|.++|+++.-..|+.+.|++...++.+-++.++
T Consensus 87 Fa~TVItTIGyGhstP~T~~GK---------~Fcm~Yal~Gipl~lvmFqs~gERlnt~~ayil~~~r~ 146 (350)
T KOG4404|consen 87 FATTVITTIGYGHSTPSTDGGK---------AFCMFYALVGIPLTLVMFQSIGERLNTFVAYILRRCRR 146 (350)
T ss_pred EEEEEEeeeccCCCCCCCcCce---------ehhhhHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999985 99999999999999999999999998666555444433
No 7
>PRK10537 voltage-gated potassium channel; Provisional
Probab=99.12 E-value=1e-10 Score=112.75 Aligned_cols=80 Identities=18% Similarity=0.301 Sum_probs=57.8
Q ss_pred CCcccceeeeeeeeecccccccccCCCcCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhh
Q psy12868 206 WPILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLGMGLIAMCFDLMRED-VRVKVRNLKTDIGLCF 284 (302)
Q Consensus 206 w~~~da~Yf~fitltTIGfGDivp~~~~~~~~~~~~~~~~~~~~~il~Gl~l~~~~~~~i~~~-~~~~~~~~~~~~~~~~ 284 (302)
+++.||+||+++|+||+||||++|.+..| ++++.+++++|++++++.++.+..- +..++++..++....
T Consensus 167 ~s~~dA~y~svvt~tTvGyGdi~p~t~~g---------rl~~i~~ii~Gi~vf~~~is~i~~p~i~~~l~~~~~~~~~~- 236 (393)
T PRK10537 167 ESLSTAFYFSIVTMSTVGYGDIVPVSESA---------RLFTISVIILGITVFATSISAIFGPVIRGNLKRLVKGRISH- 236 (393)
T ss_pred CCHHHHHHhhheeeecccCCCCCCCCHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-
Confidence 79999999999999999999999997755 5899999999999998888765442 333333332222111
Q ss_pred hhccchhhccc
Q psy12868 285 EVIRLRAIACY 295 (302)
Q Consensus 285 ~~~~~~~i~~~ 295 (302)
...++|++.|-
T Consensus 237 ~~~k~HvII~G 247 (393)
T PRK10537 237 MHRKDHFIICG 247 (393)
T ss_pred cccCCeEEEEC
Confidence 12257777764
No 8
>KOG3713|consensus
Probab=99.02 E-value=5.8e-10 Score=107.52 Aligned_cols=83 Identities=22% Similarity=0.423 Sum_probs=64.5
Q ss_pred HHHHHHhhhhhhhhcc----cc-------CCcccceeeeeeeeecccccccccCCCcCCCcCCcchhhhHHHHHHHHHHH
Q psy12868 188 VLGGYVATGTVMFAEW----EN-------WPILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLGMG 256 (302)
Q Consensus 188 ~~~~~~~iga~if~~~----e~-------w~~~da~Yf~fitltTIGfGDivp~~~~~~~~~~~~~~~~~~~~~il~Gl~ 256 (302)
++++|+++|.++|+.+ |. -|..-++|||.||+|||||||++|.|..|+ ++....++.|+.
T Consensus 347 lLllfL~~GI~iFStlvY~~Ek~~~~~~FtSIPa~~WWaiVTMTTVGYGDm~P~T~~Gk---------lvas~cil~GVL 417 (477)
T KOG3713|consen 347 LLLLFLAVGIVIFSTLVYFAEKDEPDTKFTSIPAGFWWAVVTMTTVGYGDMVPVTVLGK---------LVASLCILCGVL 417 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccchhheeeEEEeeecccCccccccchH---------HHHHHHHHHhHH
Confidence 4445555555555433 41 245778999999999999999999998884 888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy12868 257 LIAMCFDLMREDVRVKVRNLKTD 279 (302)
Q Consensus 257 l~~~~~~~i~~~~~~~~~~~~~~ 279 (302)
++++.+..|-+++.+..++.+++
T Consensus 418 vlAlPItiIv~nF~~~y~~~k~~ 440 (477)
T KOG3713|consen 418 VLALPITIIVNNFSMYYSELKAR 440 (477)
T ss_pred HhhcchHhHhhhHHHHHHHHHHH
Confidence 99999999999887666655544
No 9
>KOG1418|consensus
Probab=98.92 E-value=1.4e-09 Score=104.20 Aligned_cols=65 Identities=20% Similarity=0.464 Sum_probs=57.2
Q ss_pred ccCCcccceeeeeeeeecccccccccCCCcCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12868 204 ENWPILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLGMGLIAMCFDLMREDVRVKVRNLK 277 (302)
Q Consensus 204 e~w~~~da~Yf~fitltTIGfGDivp~~~~~~~~~~~~~~~~~~~~~il~Gl~l~~~~~~~i~~~~~~~~~~~~ 277 (302)
+.|+|.+|+|||++++|||||||++|.+..| ++++++|.++|++++.++++-+.+.+....++..
T Consensus 112 ~~W~f~~al~fs~tv~TTIGYG~i~P~T~~G---------r~~~i~YaliGIPl~li~l~~~g~~l~~~~~~~~ 176 (433)
T KOG1418|consen 112 QQWSFSSALLFSITVITTIGYGNIAPRTDAG---------RLFTILYALVGIPLMLLILADIGKFLADSLRKLY 176 (433)
T ss_pred cceecchhHhhhhheeeeccCCcccCCcCcc---------hhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3599999999999999999999999999888 4999999999999999999988877765555433
No 10
>KOG1419|consensus
Probab=98.82 E-value=3.3e-09 Score=103.13 Aligned_cols=62 Identities=27% Similarity=0.519 Sum_probs=56.9
Q ss_pred CccCCChhhhhHhhheeEEeeecceeccCCccchhhHHHHHHHhHHHHHHHHHHhhHHHHHH
Q psy12868 91 VHEIWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVLAQS 152 (302)
Q Consensus 91 ~~~~w~~~~a~~f~~t~~tTiGyG~i~P~T~~gr~~~i~y~~~Gipl~~~~l~~~g~~l~~~ 152 (302)
..+.-+|++|+||..+|+|||||||.+|+|..||+++..++++||..+.+.-+.+|.-++-.
T Consensus 264 n~~F~TyADALWWG~ITltTIGYGDk~P~TWlGr~laa~fsligiSFFALPAGILGSGfALK 325 (654)
T KOG1419|consen 264 NDEFPTYADALWWGVITLTTIGYGDKTPQTWLGRLLAACFSLIGISFFALPAGILGSGFALK 325 (654)
T ss_pred cccchhHHHHHHhhheeEEeeccCCcCcccchhHHHHHHHHHHHHHHHhcccccccchhhhh
Confidence 34567899999999999999999999999999999999999999999999999999877643
No 11
>KOG0501|consensus
Probab=98.80 E-value=7.9e-09 Score=101.09 Aligned_cols=112 Identities=17% Similarity=0.271 Sum_probs=90.4
Q ss_pred HHHHHHHHHhhhhhccccCccchhhhHHHHHHHHHHHHHHHHHcCCCC-----CCCccCCChhhhhHhhheeEEeeecce
Q psy12868 41 TNKTVLKLWEITVYYNIMNKTSWQNACDETLLIYQKNLTHQVKDGYDG-----RTVHEIWSFPAALMFSLSIFTMIGYGN 115 (302)
Q Consensus 41 r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~-----~~~~~~w~~~~a~~f~~t~~tTiGyG~ 115 (302)
-..++.++|-...++++.++.+-....+.+|-+....+...+..+.++ ..|+..--|.+|+||.+|.+|||||||
T Consensus 363 vAHWlACiWysIGd~ev~~~~~n~i~~dsWL~kLa~~~~tpY~~~~s~~~~~~gGPSr~S~YissLYfTMt~mttvGFGN 442 (971)
T KOG0501|consen 363 VAHWLACIWYSIGDYEVRDEMDNTIQPDSWLWKLANDIGTPYNYNLSNKGTLVGGPSRTSAYISSLYFTMTCMTTVGFGN 442 (971)
T ss_pred HHHHHHHhheeccchheecccccccccchHHHHHHhhcCCCceeccCCCceeecCCcccceehhhhhhhhhhhhcccccc
Confidence 457888999777777888887777788888888777776655443221 124555669999999999999999999
Q ss_pred eccCCccchhhHHHHHHHhHHHHHHHHHHhhHHHHHH
Q psy12868 116 MVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVLAQS 152 (302)
Q Consensus 116 i~P~T~~gr~~~i~y~~~Gipl~~~~l~~~g~~l~~~ 152 (302)
++|.|+.-|+|.+...++|--|+...++.+...+.++
T Consensus 443 iA~~TD~EKiF~v~mMii~aLLYAtIFG~vTTI~QQM 479 (971)
T KOG0501|consen 443 IAPNTDNEKIFGVCMMIIGALLYATIFGHVTTIIQQM 479 (971)
T ss_pred cCCCccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 9999999999999999999999999988887766554
No 12
>PRK10537 voltage-gated potassium channel; Provisional
Probab=98.77 E-value=1.4e-08 Score=97.99 Aligned_cols=56 Identities=23% Similarity=0.435 Sum_probs=51.5
Q ss_pred cCCChhhhhHhhheeEEeeecceeccCCccchhhHHHHHHHhHHHHHHHHHHhhHH
Q psy12868 93 EIWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKV 148 (302)
Q Consensus 93 ~~w~~~~a~~f~~t~~tTiGyG~i~P~T~~gr~~~i~y~~~Gipl~~~~l~~~g~~ 148 (302)
..|++.+|+||+++++||+||||+.|.|+.||+|++++.++|+.+++..++.+...
T Consensus 165 ~~~s~~dA~y~svvt~tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf~~~is~i~~p 220 (393)
T PRK10537 165 PIESLSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVFATSISAIFGP 220 (393)
T ss_pred CCCCHHHHHHhhheeeecccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46999999999999999999999999999999999999999999998888766543
No 13
>KOG1419|consensus
Probab=98.76 E-value=6.4e-09 Score=101.18 Aligned_cols=61 Identities=21% Similarity=0.373 Sum_probs=53.7
Q ss_pred CCcccceeeeeeeeecccccccccCCCcCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12868 206 WPILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLGMGLIAMCFDLMREDVRVKVRN 275 (302)
Q Consensus 206 w~~~da~Yf~fitltTIGfGDivp~~~~~~~~~~~~~~~~~~~~~il~Gl~l~~~~~~~i~~~~~~~~~~ 275 (302)
-+|.||+||..||+|||||||.+|.+-.| ++++.++.++|++.++..-+.++..+..+.++
T Consensus 268 ~TyADALWWG~ITltTIGYGDk~P~TWlG---------r~laa~fsligiSFFALPAGILGSGfALKVQe 328 (654)
T KOG1419|consen 268 PTYADALWWGVITLTTIGYGDKTPQTWLG---------RLLAACFSLIGISFFALPAGILGSGFALKVQE 328 (654)
T ss_pred hhHHHHHHhhheeEEeeccCCcCcccchh---------HHHHHHHHHHHHHHHhcccccccchhhhhhHH
Confidence 48999999999999999999999999877 48888999999999999999888877655444
No 14
>KOG1545|consensus
Probab=98.69 E-value=1.3e-08 Score=94.75 Aligned_cols=53 Identities=30% Similarity=0.486 Sum_probs=45.4
Q ss_pred cCCChhhhhHhhheeEEeeecceeccCCccchhhHHHHHHHhHHHHHHHHHHh
Q psy12868 93 EIWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNM 145 (302)
Q Consensus 93 ~~w~~~~a~~f~~t~~tTiGyG~i~P~T~~gr~~~i~y~~~Gipl~~~~l~~~ 145 (302)
..-+.++|+||+.+++|||||||++|.|.+||+...+.|+.|+--..+.+-.+
T Consensus 390 ~F~SIPdaFWwavVTMTTVGYGDm~P~TvgGKIVGslCAiaGVLTiALPVPVI 442 (507)
T KOG1545|consen 390 HFSSIPDAFWWAVVTMTTVGYGDMVPVTVGGKIVGSLCAIAGVLTIALPVPVI 442 (507)
T ss_pred CCCcCcccceEEEEEEEeeccccceecccCceehhhHHhhhhheEecccccEE
Confidence 34678999999999999999999999999999999999999986555544333
No 15
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=98.60 E-value=4.4e-08 Score=103.06 Aligned_cols=56 Identities=20% Similarity=0.475 Sum_probs=52.7
Q ss_pred hhhhhHhhheeEEeeecceeccCCccchhhHHHHHHHhHHHHHHHHHHhhHHHHHH
Q psy12868 97 FPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVLAQS 152 (302)
Q Consensus 97 ~~~a~~f~~t~~tTiGyG~i~P~T~~gr~~~i~y~~~Gipl~~~~l~~~g~~l~~~ 152 (302)
|..|+||+++|+|||||||++|.|+.+|+|++++.++|+.++...++++++.+...
T Consensus 251 Yi~slYwai~TmtTVGYGDi~p~t~~E~i~~i~~ml~g~~~~a~~ig~i~~li~~~ 306 (823)
T PLN03192 251 YISAIYWSITTMTTVGYGDLHAVNTIEMIFIIFYMLFNLGLTAYLIGNMTNLVVEG 306 (823)
T ss_pred HHHHHHHHHHHHhhccCCCcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66699999999999999999999999999999999999999999999999987654
No 16
>KOG1545|consensus
Probab=98.48 E-value=1.4e-07 Score=87.86 Aligned_cols=56 Identities=21% Similarity=0.355 Sum_probs=46.9
Q ss_pred CCcccceeeeeeeeecccccccccCCCcCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12868 206 WPILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLGMGLIAMCFDLMREDVR 270 (302)
Q Consensus 206 w~~~da~Yf~fitltTIGfGDivp~~~~~~~~~~~~~~~~~~~~~il~Gl~l~~~~~~~i~~~~~ 270 (302)
-+..|||||+++|+|||||||.+|.+..|+ ++..+..+.|+.-++...-.+.+.+.
T Consensus 392 ~SIPdaFWwavVTMTTVGYGDm~P~TvgGK---------IVGslCAiaGVLTiALPVPVIVsNFn 447 (507)
T KOG1545|consen 392 SSIPDAFWWAVVTMTTVGYGDMVPVTVGGK---------IVGSLCAIAGVLTIALPVPVIVSNFN 447 (507)
T ss_pred CcCcccceEEEEEEEeeccccceecccCce---------ehhhHHhhhhheEecccccEEEeccc
Confidence 367999999999999999999999999885 77778888888777777766665554
No 17
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=98.44 E-value=2.5e-07 Score=97.43 Aligned_cols=54 Identities=26% Similarity=0.496 Sum_probs=47.1
Q ss_pred cccceeeeeeeeecccccccccCCCcCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12868 208 ILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLGMGLIAMCFDLMREDVR 270 (302)
Q Consensus 208 ~~da~Yf~fitltTIGfGDivp~~~~~~~~~~~~~~~~~~~~~il~Gl~l~~~~~~~i~~~~~ 270 (302)
|..|+||+++|+|||||||++|.+..+ ++++++++++|++++++.++.+.+-+.
T Consensus 251 Yi~slYwai~TmtTVGYGDi~p~t~~E---------~i~~i~~ml~g~~~~a~~ig~i~~li~ 304 (823)
T PLN03192 251 YISAIYWSITTMTTVGYGDLHAVNTIE---------MIFIIFYMLFNLGLTAYLIGNMTNLVV 304 (823)
T ss_pred HHHHHHHHHHHHhhccCCCcCCCccch---------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344899999999999999999998765 589999999999999999998876543
No 18
>KOG1420|consensus
Probab=98.28 E-value=7.5e-07 Score=87.38 Aligned_cols=70 Identities=17% Similarity=0.277 Sum_probs=54.8
Q ss_pred HHHhhhhhhhhcccc-------------CCcccceeeeeeeeecccccccccCCCcCCCcCCcchhhhHHHHHHHHHHHH
Q psy12868 191 GYVATGTVMFAEWEN-------------WPILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLGMGL 257 (302)
Q Consensus 191 ~~~~iga~if~~~e~-------------w~~~da~Yf~fitltTIGfGDivp~~~~~~~~~~~~~~~~~~~~~il~Gl~l 257 (302)
...+-+|.+.+.+|+ .+|.|+.||..+|++||||||+.-.+..| +.|..++++.|+++
T Consensus 259 svwltaag~ihllensgdp~~~f~n~hrltyw~cvyfl~vtmstvgygdvyc~t~lg---------rlfmvffil~glam 329 (1103)
T KOG1420|consen 259 SVWLTAAGFIHLLENSGDPWENFQNNHRLTYWECVYFLMVTMSTVGYGDVYCKTTLG---------RLFMVFFILGGLAM 329 (1103)
T ss_pred HHHHhhcceeehhhcCCChhHhccCcccchhhheeeeeEEEeeeccccceeehhhhh---------HHHHHHHHHHHHHH
Confidence 334456666666663 47899999999999999999999998776 58899999999998
Q ss_pred HHHHHHHHHHHH
Q psy12868 258 IAMCFDLMREDV 269 (302)
Q Consensus 258 ~~~~~~~i~~~~ 269 (302)
++.-+--+.+-+
T Consensus 330 fasyvpeiieli 341 (1103)
T KOG1420|consen 330 FASYVPEIIELI 341 (1103)
T ss_pred HHhhhHHHHHHH
Confidence 876655554433
No 19
>KOG1420|consensus
Probab=98.13 E-value=1.4e-06 Score=85.51 Aligned_cols=58 Identities=17% Similarity=0.457 Sum_probs=51.4
Q ss_pred ccCCChhhhhHhhheeEEeeecceeccCCccchhhHHHHHHHhHHHHHHHHHHhhHHH
Q psy12868 92 HEIWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVL 149 (302)
Q Consensus 92 ~~~w~~~~a~~f~~t~~tTiGyG~i~P~T~~gr~~~i~y~~~Gipl~~~~l~~~g~~l 149 (302)
...-+|++++||-+++++|+||||+++.|..||+|.++|.+.|.+++.-.+-.+.+.+
T Consensus 284 ~hrltyw~cvyfl~vtmstvgygdvyc~t~lgrlfmvffil~glamfasyvpeiieli 341 (1103)
T KOG1420|consen 284 NHRLTYWECVYFLMVTMSTVGYGDVYCKTTLGRLFMVFFILGGLAMFASYVPEIIELI 341 (1103)
T ss_pred cccchhhheeeeeEEEeeeccccceeehhhhhHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3457899999999999999999999999999999999999999999887776665544
No 20
>KOG4390|consensus
Probab=98.10 E-value=2.5e-07 Score=87.02 Aligned_cols=65 Identities=25% Similarity=0.476 Sum_probs=54.7
Q ss_pred CCccCCChhhhhHhhheeEEeeecceeccCCccchhhHHHHHHHhHHHHHHHHHHhhHHHHHHHH
Q psy12868 90 TVHEIWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVLAQSFR 154 (302)
Q Consensus 90 ~~~~~w~~~~a~~f~~t~~tTiGyG~i~P~T~~gr~~~i~y~~~Gipl~~~~l~~~g~~l~~~~~ 154 (302)
+....-+.+.|+||.++++||.||||++|.|.+||+|..+..+.|+-...+.+-.+..-+++++.
T Consensus 350 ~at~FTsIPaaFWYTIVTmTTLGYGDMVp~TIaGKIfGsiCSLSGVLVIALPVPvIVSNFSRIYH 414 (632)
T KOG4390|consen 350 SATKFTSIPAAFWYTIVTMTTLGYGDMVPSTIAGKIFGSICSLSGVLVIALPVPVIVSNFSRIYH 414 (632)
T ss_pred cccccccCcHhHhhheeeeeeccccccchHHHHHHHhhhhhcccceEEEeccccEEEechhHHHh
Confidence 34556789999999999999999999999999999999999999987777776666666666543
No 21
>KOG0498|consensus
Probab=98.06 E-value=4.2e-06 Score=85.77 Aligned_cols=59 Identities=24% Similarity=0.429 Sum_probs=55.0
Q ss_pred ChhhhhHhhheeEEeeecceeccCCccchhhHHHHHHHhHHHHHHHHHHhhHHHHHHHH
Q psy12868 96 SFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVLAQSFR 154 (302)
Q Consensus 96 ~~~~a~~f~~t~~tTiGyG~i~P~T~~gr~~~i~y~~~Gipl~~~~l~~~g~~l~~~~~ 154 (302)
-|.-|+||+++++||+|||+.+|.+..-++|+|+|+++|.-+++++++++...+.+...
T Consensus 294 kY~~aLyw~l~tLstvG~g~~~s~~~~E~iFsi~~mi~GllL~A~lIGNmt~~iqs~ts 352 (727)
T KOG0498|consen 294 KYVYALYWGLSTLSTVGYGLVHANNMGEKIFSIFIMLFGLLLFAYLIGNMTALLQSLTS 352 (727)
T ss_pred HHHHHHHHHhhHhhhccCCccCCCCcHHHHHHHHHHHHhHHHHHHHHhhHHHhHHHHhH
Confidence 37889999999999999999999999999999999999999999999999988876543
No 22
>KOG0498|consensus
Probab=97.97 E-value=2.3e-06 Score=87.66 Aligned_cols=56 Identities=18% Similarity=0.263 Sum_probs=48.2
Q ss_pred cccceeeeeeeeecccccccccCCCcCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12868 208 ILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLGMGLIAMCFDLMREDVRVK 272 (302)
Q Consensus 208 ~~da~Yf~fitltTIGfGDivp~~~~~~~~~~~~~~~~~~~~~il~Gl~l~~~~~~~i~~~~~~~ 272 (302)
|.-|+||++.|+||+||||..|.+.. -.+|+++++++|+.+.|++|+-++.-++..
T Consensus 295 Y~~aLyw~l~tLstvG~g~~~s~~~~---------E~iFsi~~mi~GllL~A~lIGNmt~~iqs~ 350 (727)
T KOG0498|consen 295 YVYALYWGLSTLSTVGYGLVHANNMG---------EKIFSIFIMLFGLLLFAYLIGNMTALLQSL 350 (727)
T ss_pred HHHHHHHHhhHhhhccCCccCCCCcH---------HHHHHHHHHHHhHHHHHHHHhhHHHhHHHH
Confidence 45689999999999999999988653 269999999999999999999988766543
No 23
>KOG3684|consensus
Probab=97.93 E-value=1.2e-05 Score=77.35 Aligned_cols=82 Identities=18% Similarity=0.279 Sum_probs=67.8
Q ss_pred eehhhHHHHHHHHHhhhhhhhhcccc--------CCcccceeeeeeeeecccccccccCCCcCCCcCCcchhhhHHHHHH
Q psy12868 180 VPSTACLWVLGGYVATGTVMFAEWEN--------WPILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYL 251 (302)
Q Consensus 180 ~~~~~~l~~~~~~~~iga~if~~~e~--------w~~~da~Yf~fitltTIGfGDivp~~~~~~~~~~~~~~~~~~~~~i 251 (302)
.|.+..+...+.+.++.+.++..-|- -.+.++.|+..+|+-+|||||+||++.-|+ .++++--
T Consensus 252 ~Pg~vL~vftl~~Wii~sW~~~~cER~~~~~~~~~~~~nsmWli~iTFlsiGYGDiVP~TycGr---------~v~l~tG 322 (489)
T KOG3684|consen 252 CPGTVLLVFTLSLWIIASWMLRQCERYHDSQDVTINYLNSMWLIAITFLSIGYGDIVPNTYCGR---------GVALLTG 322 (489)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHhhHHHHHHHHhhcccCcccCCccccc---------hHHHHhh
Confidence 35566666677777888888876662 358999999999999999999999998884 7778888
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy12868 252 LLGMGLIAMCFDLMREDVR 270 (302)
Q Consensus 252 l~Gl~l~~~~~~~i~~~~~ 270 (302)
++|.+..|+++..++++++
T Consensus 323 ivGa~~sallvAvisRKLe 341 (489)
T KOG3684|consen 323 IVGAGCSSLLVAVIARKLE 341 (489)
T ss_pred hhhhhHHHHHHHHHHHHHH
Confidence 8999999999999988775
No 24
>KOG3684|consensus
Probab=97.90 E-value=1.7e-05 Score=76.26 Aligned_cols=54 Identities=22% Similarity=0.458 Sum_probs=49.5
Q ss_pred ChhhhhHhhheeEEeeecceeccCCccchhhHHHHHHHhHHHHHHHHHHhhHHH
Q psy12868 96 SFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVL 149 (302)
Q Consensus 96 ~~~~a~~f~~t~~tTiGyG~i~P~T~~gr~~~i~y~~~Gipl~~~~l~~~g~~l 149 (302)
+|.++.|+-.+|+-+|||||++|.|-.||..|++=+++|--...++++.+..-+
T Consensus 287 ~~~nsmWli~iTFlsiGYGDiVP~TycGr~v~l~tGivGa~~sallvAvisRKL 340 (489)
T KOG3684|consen 287 NYLNSMWLIAITFLSIGYGDIVPNTYCGRGVALLTGIVGAGCSSLLVAVIARKL 340 (489)
T ss_pred HHHhhHHHHHHHHhhcccCcccCCccccchHHHHhhhhhhhHHHHHHHHHHHHH
Confidence 467889999999999999999999999999999999999999999998887754
No 25
>KOG4390|consensus
Probab=97.67 E-value=5.2e-06 Score=78.32 Aligned_cols=54 Identities=22% Similarity=0.407 Sum_probs=43.5
Q ss_pred CcccceeeeeeeeecccccccccCCCcCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12868 207 PILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLGMGLIAMCFDLMREDV 269 (302)
Q Consensus 207 ~~~da~Yf~fitltTIGfGDivp~~~~~~~~~~~~~~~~~~~~~il~Gl~l~~~~~~~i~~~~ 269 (302)
+..-||||+.+|+||.||||.||.+-.|+ +|..+.-+-|+.+++...-.+.+.+
T Consensus 356 sIPaaFWYTIVTmTTLGYGDMVp~TIaGK---------IfGsiCSLSGVLVIALPVPvIVSNF 409 (632)
T KOG4390|consen 356 SIPAAFWYTIVTMTTLGYGDMVPSTIAGK---------IFGSICSLSGVLVIALPVPVIVSNF 409 (632)
T ss_pred cCcHhHhhheeeeeeccccccchHHHHHH---------HhhhhhcccceEEEeccccEEEech
Confidence 45788999999999999999999998874 8888888888877776665544333
No 26
>KOG3193|consensus
Probab=97.58 E-value=0.00012 Score=71.80 Aligned_cols=28 Identities=25% Similarity=0.568 Sum_probs=25.4
Q ss_pred CCcccceeeeeeeeecccccccccCCCc
Q psy12868 206 WPILDSCYFCVTSLCKIGIGDFVPGANI 233 (302)
Q Consensus 206 w~~~da~Yf~fitltTIGfGDivp~~~~ 233 (302)
.+.+.++||.++|++||||||.+|.--.
T Consensus 216 i~lf~s~y~v~vtfstvgygd~~pd~w~ 243 (1087)
T KOG3193|consen 216 IDLFTSFYFVMVTFSTVGYGDWYPDYWA 243 (1087)
T ss_pred eeeeeeEEEEEEEEeeccccccccccch
Confidence 6889999999999999999999998543
No 27
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=97.23 E-value=0.00011 Score=69.69 Aligned_cols=52 Identities=25% Similarity=0.336 Sum_probs=42.1
Q ss_pred CChhhhhHhhheeEEeeecce--eccCCccchhhHHHHHHHhHHHHHHHHHHhh
Q psy12868 95 WSFPAALMFSLSIFTMIGYGN--MVPRTLLGKATTVVYAVFGIPLYVLYFRNMG 146 (302)
Q Consensus 95 w~~~~a~~f~~t~~tTiGyG~--i~P~T~~gr~~~i~y~~~Gipl~~~~l~~~g 146 (302)
=+|.+|++|+..|+||||||. +.|..+.+-++.++=+++|+-+..++++.+-
T Consensus 83 ~~f~~aF~FSveT~tTIGYG~~~~~~~c~~a~~l~~~q~~~g~l~~a~~~Glvf 136 (336)
T PF01007_consen 83 NSFTSAFLFSVETQTTIGYGSRYPTPECPYAIFLVTIQSLVGLLLDAFMTGLVF 136 (336)
T ss_dssp TTHHHHHHHHHHHHTT---SSSEB-CSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhheeEEEEEEEEeccCCcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999999 6789999999999999999988877775543
No 28
>KOG0501|consensus
Probab=97.19 E-value=0.00039 Score=68.92 Aligned_cols=55 Identities=22% Similarity=0.447 Sum_probs=46.8
Q ss_pred CcccceeeeeeeeecccccccccCCCcCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12868 207 PILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLGMGLIAMCFDLMREDVR 270 (302)
Q Consensus 207 ~~~da~Yf~fitltTIGfGDivp~~~~~~~~~~~~~~~~~~~~~il~Gl~l~~~~~~~i~~~~~ 270 (302)
-|..|+||+..++||||||.+.|.++.- .+|..+.+++|-.+-+..|+-+..-++
T Consensus 423 ~YissLYfTMt~mttvGFGNiA~~TD~E---------KiF~v~mMii~aLLYAtIFG~vTTI~Q 477 (971)
T KOG0501|consen 423 AYISSLYFTMTCMTTVGFGNIAPNTDNE---------KIFGVCMMIIGALLYATIFGHVTTIIQ 477 (971)
T ss_pred eehhhhhhhhhhhhcccccccCCCccHH---------HHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 4788999999999999999999998754 489999999999888888887665554
No 29
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=96.51 E-value=0.0026 Score=60.39 Aligned_cols=58 Identities=21% Similarity=0.244 Sum_probs=40.3
Q ss_pred CcccceeeeeeeeecccccccccCCCcCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12868 207 PILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLGMGLIAMCFDLMREDVRV 271 (302)
Q Consensus 207 ~~~da~Yf~fitltTIGfGDivp~~~~~~~~~~~~~~~~~~~~~il~Gl~l~~~~~~~i~~~~~~ 271 (302)
+|.+||+|+.-|.||||||...|... -+...++..+=.++|+.+.+.+.+++-.++.+
T Consensus 84 ~f~~aF~FSveT~tTIGYG~~~~~~~-------c~~a~~l~~~q~~~g~l~~a~~~Glvfar~sr 141 (336)
T PF01007_consen 84 SFTSAFLFSVETQTTIGYGSRYPTPE-------CPYAIFLVTIQSLVGLLLDAFMTGLVFARFSR 141 (336)
T ss_dssp THHHHHHHHHHHHTT---SSSEB-CS-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred chhhheeEEEEEEEEeccCCcccCCC-------cchhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 79999999999999999999543321 12234556678889999999888887766643
No 30
>KOG3193|consensus
Probab=95.17 E-value=0.016 Score=57.40 Aligned_cols=57 Identities=16% Similarity=0.349 Sum_probs=45.0
Q ss_pred ccCCChhhhhHhhheeEEeeecceeccCCccchhhHHHHHHHhHHHHHHHHHHhhHH
Q psy12868 92 HEIWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKV 148 (302)
Q Consensus 92 ~~~w~~~~a~~f~~t~~tTiGyG~i~P~T~~gr~~~i~y~~~Gipl~~~~l~~~g~~ 148 (302)
...-+...++||.+++++|+||||.+|.-.+.++..++.+.+...+..--+..+|+.
T Consensus 213 ~k~i~lf~s~y~v~vtfstvgygd~~pd~w~sql~~vi~icval~~ip~q~~~l~~t 269 (1087)
T KOG3193|consen 213 GKRIDLFTSFYFVMVTFSTVGYGDWYPDYWASQLCVVILICVALGLIPKQLDELGQT 269 (1087)
T ss_pred CceeeeeeeEEEEEEEEeeccccccccccchhhHHHHHHHHHHHhccHHHHHHHHHH
Confidence 456889999999999999999999999999999988776665555554445555544
No 31
>KOG0500|consensus
Probab=95.15 E-value=0.042 Score=53.89 Aligned_cols=75 Identities=17% Similarity=0.217 Sum_probs=49.1
Q ss_pred cceeeeeeeeecccccccc-cCCCcCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHH
Q psy12868 210 DSCYFCVTSLCKIGIGDFV-PGANILDSKSGHHIKLIINFIYLLLGMGLIAMCFDLMRED----------VRVKVRNLKT 278 (302)
Q Consensus 210 da~Yf~fitltTIGfGDiv-p~~~~~~~~~~~~~~~~~~~~~il~Gl~l~~~~~~~i~~~----------~~~~~~~~~~ 278 (302)
-|+|||..|+|||| |-. |.++. .+ .|.++=.++|+.++|..++-+++. ++.++...|.
T Consensus 186 ~S~YWStLTlTTiG--e~P~P~t~~--------ey-~F~I~d~LiGvliFAtIvG~VGsmVtnmna~r~EFq~~mDGiK~ 254 (536)
T KOG0500|consen 186 YSLYWSTLTLTTIG--EQPPPVTSS--------EY-AFVIVDTLIGVLIFATIVGNVGSMVTNMNAARTEFQAKMDGIKQ 254 (536)
T ss_pred HHHHHHhhhhhhcc--CCCCCCcCc--------hh-hHHHHHHHHHHHHHhhhhccHhHHHHhhhHHHHHHHHHHHHHHH
Confidence 38999999999998 432 22221 12 667778889999988887765543 3444444443
Q ss_pred H--hhhhhhhccchhhccc
Q psy12868 279 D--IGLCFEVIRLRAIACY 295 (302)
Q Consensus 279 ~--~~~~~~~~~~~~i~~~ 295 (302)
. .++.-+.++.+++.||
T Consensus 255 YM~~RkV~~~lq~rVikwf 273 (536)
T KOG0500|consen 255 YMRYRKVPKALQTRVIKWF 273 (536)
T ss_pred HHHHhcccHHHHHHHHHHH
Confidence 2 3444466778888887
No 32
>KOG0500|consensus
Probab=93.99 E-value=0.047 Score=53.56 Aligned_cols=54 Identities=22% Similarity=0.301 Sum_probs=50.1
Q ss_pred hhhhHhhheeEEeeecceeccCCccchhhHHHHHHHhHHHHHHHHHHhhHHHHHH
Q psy12868 98 PAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVLAQS 152 (302)
Q Consensus 98 ~~a~~f~~t~~tTiGyG~i~P~T~~gr~~~i~y~~~Gipl~~~~l~~~g~~l~~~ 152 (302)
.-|+|||.-|+|||| --..|.|..--+|.|+=-++|+-+++..++++|+.++.+
T Consensus 185 ~~S~YWStLTlTTiG-e~P~P~t~~ey~F~I~d~LiGvliFAtIvG~VGsmVtnm 238 (536)
T KOG0500|consen 185 LYSLYWSTLTLTTIG-EQPPPVTSSEYAFVIVDTLIGVLIFATIVGNVGSMVTNM 238 (536)
T ss_pred HHHHHHHhhhhhhcc-CCCCCCcCchhhHHHHHHHHHHHHHhhhhccHhHHHHhh
Confidence 469999999999999 678899999999999999999999999999999998765
No 33
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=92.22 E-value=0.075 Score=44.75 Aligned_cols=49 Identities=20% Similarity=0.315 Sum_probs=38.8
Q ss_pred CChhhhhHhhheeEEeeecceeccC-----CccchhhHHHHHHHhH-HHHHHHHH
Q psy12868 95 WSFPAALMFSLSIFTMIGYGNMVPR-----TLLGKATTVVYAVFGI-PLYVLYFR 143 (302)
Q Consensus 95 w~~~~a~~f~~t~~tTiGyG~i~P~-----T~~gr~~~i~y~~~Gi-pl~~~~l~ 143 (302)
=++..|+++.+.++||.|+|++.|. +..+.++.+.|.+++. -++.+.++
T Consensus 144 ~~~~~s~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~nllia 198 (200)
T PF00520_consen 144 DSFGESLYWLFQTMTGEGWGDVMPSCMSARSWLAVIFFISFIIIVSILLLNLLIA 198 (200)
T ss_dssp SSHHHHHHHHHHHHTTTTCCCCHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccCCccccccccccccchhHhHHhhhhhhhHHHHHHHHHHh
Confidence 4689999999999999999999998 8889998866666554 44444443
No 34
>KOG3827|consensus
Probab=91.69 E-value=0.19 Score=48.00 Aligned_cols=50 Identities=24% Similarity=0.348 Sum_probs=37.2
Q ss_pred CChhhhhHhhheeEEeeecceeccCC--ccchhhHHHHHHHhHHHHHHHHHH
Q psy12868 95 WSFPAALMFSLSIFTMIGYGNMVPRT--LLGKATTVVYAVFGIPLYVLYFRN 144 (302)
Q Consensus 95 w~~~~a~~f~~t~~tTiGyG~i~P~T--~~gr~~~i~y~~~Gipl~~~~l~~ 144 (302)
-+|.+||.|++-|-||||||.-.+.. +.+=+..++=+++|.-+-..+++.
T Consensus 111 ~sf~sAFLFSiETQtTIGYG~R~vTeeCP~aI~ll~~Q~I~g~ii~afm~G~ 162 (400)
T KOG3827|consen 111 HSFTSAFLFSIETQTTIGYGFRYVTEECPEAIFLLVLQSILGVIINAFMVGA 162 (400)
T ss_pred cchhhhheeeeeeeeeeeccccccCccChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999877654 445555666667777666665543
No 35
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=91.64 E-value=0.14 Score=43.00 Aligned_cols=55 Identities=15% Similarity=0.315 Sum_probs=36.6
Q ss_pred CcccceeeeeeeeecccccccccCCCcCCCcCCcchhhhHH-HHHHHHHHHHHHHHHHHH
Q psy12868 207 PILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIIN-FIYLLLGMGLIAMCFDLM 265 (302)
Q Consensus 207 ~~~da~Yf~fitltTIGfGDivp~~~~~~~~~~~~~~~~~~-~~~il~Gl~l~~~~~~~i 265 (302)
++..|+|+.+.++||.|+||..|..... .+....++. ...++.++.++++++..+
T Consensus 145 ~~~~s~~~~~~~~t~~~~~~~~~~~~~~----~~~~~~~~~~~~~~i~~~~l~nlliavi 200 (200)
T PF00520_consen 145 SFGESLYWLFQTMTGEGWGDVMPSCMSA----RSWLAVIFFISFIIIVSILLLNLLIAVI 200 (200)
T ss_dssp SHHHHHHHHHHHHTTTTCCCCHHHHHHT----TSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccCCccccccccccc----cchhHhHHhhhhhhhHHHHHHHHHHhcC
Confidence 6889999999999999999999973100 011223333 455556667777766543
No 36
>TIGR00933 2a38 potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system.
Probab=90.93 E-value=0.099 Score=50.59 Aligned_cols=40 Identities=10% Similarity=0.169 Sum_probs=31.4
Q ss_pred CChhhhhHhhheeEEeeeccee--ccCCccchhhHHHHHHHh
Q psy12868 95 WSFPAALMFSLSIFTMIGYGNM--VPRTLLGKATTVVYAVFG 134 (302)
Q Consensus 95 w~~~~a~~f~~t~~tTiGyG~i--~P~T~~gr~~~i~y~~~G 134 (302)
....++.|+..++++|-||... .--++.++++.++..++|
T Consensus 230 ~~~~~~~f~~~s~~~T~Gfst~d~~~~~~~~~lll~~lMfIG 271 (390)
T TIGR00933 230 GALLLSAFFQSSTLRTAGFSTIDFAALPTATLVLLLLLMFIG 271 (390)
T ss_pred HHHHHHHHHHHhhccCCCccccChhhcCHHHHHHHHHHHHHc
Confidence 4578999999999999998743 344667788888777777
No 37
>TIGR00933 2a38 potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system.
Probab=90.87 E-value=0.29 Score=47.42 Aligned_cols=128 Identities=16% Similarity=0.126 Sum_probs=63.3
Q ss_pred CCChhhhhHhhheeEEeeecceecc---CCccchhhHHHHHHH---hHHHHHHHHHH-hhHHHHHHHHHHHHHHhhhccc
Q psy12868 94 IWSFPAALMFSLSIFTMIGYGNMVP---RTLLGKATTVVYAVF---GIPLYVLYFRN-MGKVLAQSFRWLYTWLYECTME 166 (302)
Q Consensus 94 ~w~~~~a~~f~~t~~tTiGyG~i~P---~T~~gr~~~i~y~~~---Gipl~~~~l~~-~g~~l~~~~~~~~~~~~~~~~~ 166 (302)
..+|.||+|-+++-+||-|.=-+.| .++.|++.-.+-.-+ |++.....+-. +|..+.... ++......
T Consensus 13 ~~s~~dA~FeavSa~ttTGltv~~~~~~~~~~~~~~r~~l~~iGGlG~~v~~~~~l~~~g~~~~~~~-----~l~~~e~~ 87 (390)
T TIGR00933 13 PLSFIDALFTATSAVTTTGLTVLDTLESLPKAGLFLRSLLQQIGGLGFMVLAVAILILLGKKISLGA-----RLYLAEAL 87 (390)
T ss_pred CCCHHHHHHhhHhhcccCCCeEccChhhcCHhHHHHHHHHHHHcChHHHHHHHHHHHHHccccCHHH-----HHHHHHhC
Confidence 4689999999999999999544432 355666654444444 44444433222 122111111 11111111
Q ss_pred CcCCCCCCCCeeeeehhhHHHHHHHHHhhhhhhhhccccCCcccceeeeeeeeecccccc
Q psy12868 167 DRRSEGEVSPRIIVPSTACLWVLGGYVATGTVMFAEWENWPILDSCYFCVTSLCKIGIGD 226 (302)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~iga~if~~~e~w~~~da~Yf~fitltTIGfGD 226 (302)
.+.+..+..+++.......+.+-+++..++++.|...+.-++.||++.++.+++|=||.=
T Consensus 88 ~~~~~~~~~~~i~~~~~~~~~iy~~lt~l~~~~~~~~g~~~~~~Aif~avSa~~taGFs~ 147 (390)
T TIGR00933 88 GPLSDDKLLPLIKNTAKFIFVIYLLGTILLAVRFVLTGWMPLFDAIFHSISAFNNGGFST 147 (390)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhcCCcCC
Confidence 100000011111111112222233333445555544332578999999999999999854
No 38
>COG0168 TrkG Trk-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=87.34 E-value=0.54 Score=47.13 Aligned_cols=83 Identities=11% Similarity=0.190 Sum_probs=46.0
Q ss_pred hhhHHHHHHHHHhhhhhhhhccccCCcccceeeeeeeeecccccccccCCCcCCCcCCcchhhhHHHHHHHHH-HHHHHH
Q psy12868 182 STACLWVLGGYVATGTVMFAEWENWPILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLG-MGLIAM 260 (302)
Q Consensus 182 ~~~~l~~~~~~~~iga~if~~~e~w~~~da~Yf~fitltTIGfGDivp~~~~~~~~~~~~~~~~~~~~~il~G-l~l~~~ 260 (302)
....+++.++.+++++.+....|.-++.|+++=++-++.|||.|=-++.+..+... ..+..++..++-+++| +.+++.
T Consensus 399 ~~~~~~l~~~~~~i~~~~l~~~~~~~~~~~lfEv~SA~gtVGlSlG~t~~~~~~~~-~~~~~K~vli~~M~~GRleil~~ 477 (499)
T COG0168 399 ALAFFFLYLLILIIGALILILTGYDPFIDALFEVVSAFGTVGLSLGITGDLASNFA-LPPLAKLVLIALMLIGRLEILTV 477 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHhhcCCCCCCCCCCCccccc-cCchHHHHHHHHHHhhccchhhH
Confidence 33344444555666777666555438999999999999999986554443222111 1222234444444444 344444
Q ss_pred HHHHH
Q psy12868 261 CFDLM 265 (302)
Q Consensus 261 ~~~~i 265 (302)
.+...
T Consensus 478 lv~~~ 482 (499)
T COG0168 478 LVLFT 482 (499)
T ss_pred HHhhh
Confidence 44433
No 39
>KOG3827|consensus
Probab=85.12 E-value=1.8 Score=41.57 Aligned_cols=57 Identities=12% Similarity=0.166 Sum_probs=39.0
Q ss_pred CCcccceeeeeeeeecccccccccCCCcCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12868 206 WPILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLGMGLIAMCFDLMREDV 269 (302)
Q Consensus 206 w~~~da~Yf~fitltTIGfGDivp~~~~~~~~~~~~~~~~~~~~~il~Gl~l~~~~~~~i~~~~ 269 (302)
-+|.-||-|++-|=||||||--.+... =|...+...+-.++|+.+-+...+.+-.++
T Consensus 111 ~sf~sAFLFSiETQtTIGYG~R~vTee-------CP~aI~ll~~Q~I~g~ii~afm~G~i~aKi 167 (400)
T KOG3827|consen 111 HSFTSAFLFSIETQTTIGYGFRYVTEE-------CPEAIFLLVLQSILGVIINAFMVGAIFAKI 167 (400)
T ss_pred cchhhhheeeeeeeeeeeccccccCcc-------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356789999999999999999888754 233334444566677766666655554444
No 40
>PRK10750 potassium transporter; Provisional
Probab=82.38 E-value=1 Score=45.05 Aligned_cols=126 Identities=12% Similarity=0.022 Sum_probs=57.8
Q ss_pred hhhhhHhhheeEEeeecceec--cCCccchhhHHHHHHHhHHHHHH--HHHHhhHHHHHHHHHHHHHHhhhcccCc----
Q psy12868 97 FPAALMFSLSIFTMIGYGNMV--PRTLLGKATTVVYAVFGIPLYVL--YFRNMGKVLAQSFRWLYTWLYECTMEDR---- 168 (302)
Q Consensus 97 ~~~a~~f~~t~~tTiGyG~i~--P~T~~gr~~~i~y~~~Gipl~~~--~l~~~g~~l~~~~~~~~~~~~~~~~~~~---- 168 (302)
+.+|+|-+.+.+||-||.... --++..+++.++..++|=-.--. -+... ++.-..+...+.+++..+++.
T Consensus 305 l~~s~Fq~vS~~tTtGF~t~d~~~w~~~~~~ll~~lMfIGG~~GSTaGGIKv~--R~~vl~~~~~~~l~~~~~P~~V~~v 382 (483)
T PRK10750 305 LNQAFFQVVSMATTAGFTTDSIARWPLFLPVLLLCSAFIGGCAGSTGGGLKVI--RILLLFKQGNRELKRLVHPNAVYSI 382 (483)
T ss_pred HHHHHHeeeecccCCCCCCCChhhccHHHHHHHHHHHHHcCCcccCcccHHHH--HHHHHHHHHHHHHHHhcCCCceeee
Confidence 566777777778999998542 23344566666666665110000 00000 111122333333332222111
Q ss_pred -CCCCCCCCeeeeehhhHHHHHHHHHhhhhhhhhccccCCcccceeeeeeeeeccccc
Q psy12868 169 -RSEGEVSPRIIVPSTACLWVLGGYVATGTVMFAEWENWPILDSCYFCVTSLCKIGIG 225 (302)
Q Consensus 169 -~~~~~~~~~~~~~~~~~l~~~~~~~~iga~if~~~e~w~~~da~Yf~fitltTIGfG 225 (302)
...++.+++........+++.++.+.+++.+. ..++-++.+|+-=+..+++++|.|
T Consensus 383 ~~~gr~i~~~~v~~v~~~~~ly~~~~~~~~~~l-~~~g~~~~sA~~~v~s~l~nvG~s 439 (483)
T PRK10750 383 KLGNRALPERILEAVWGFFSAYALVFIVSMLAI-IATGVDDFSAFASVVATLNNLGPG 439 (483)
T ss_pred eECCEECCHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCcHHHHHHHHHHHhcCCCCC
Confidence 11111112111122222222233334555555 456778888887666778877754
No 41
>PF02386 TrkH: Cation transport protein; InterPro: IPR003445 This family consists of various potassium transport proteins (Trk) and V-type sodium ATP synthase subunit J or translocating ATPase J (3.6.1.34 from EC). These proteins are involved in active sodium up-take utilizing ATP in the process. TrkH from Escherichia coli is a hydrophobic membrane protein and determines the specificity and kinetics of cation transport by the TrK system in this organism []. This protein interacts with TrkA and requires TrkE for transport activity.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport; PDB: 3PJZ_A.
Probab=81.25 E-value=0.24 Score=47.27 Aligned_cols=135 Identities=9% Similarity=-0.006 Sum_probs=55.1
Q ss_pred CCChhhhhHhhheeEEeeecceecc--CCccchhhHHHHHHHhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhcccCc---
Q psy12868 94 IWSFPAALMFSLSIFTMIGYGNMVP--RTLLGKATTVVYAVFGIPLYVLYFRNMGKVLAQSFRWLYTWLYECTMEDR--- 168 (302)
Q Consensus 94 ~w~~~~a~~f~~t~~tTiGyG~i~P--~T~~gr~~~i~y~~~Gipl~~~~l~~~g~~l~~~~~~~~~~~~~~~~~~~--- 168 (302)
.++...+.||..+..||-||..+.. -++..+++.++..++|=--....-+.=-.++....+.. +.+.+...+.+
T Consensus 174 ~~~~~~~~f~~~s~~rTtGF~t~d~~~~~~~~~~l~~~lM~IGg~~gSTaGGiK~~r~~il~~~~-~~~~~~~~p~~~~~ 252 (354)
T PF02386_consen 174 FGSKRLSAFFQVSSLRTTGFSTVDISQWSPFTLLLLIILMFIGGSPGSTAGGIKITRFAILLKSI-REIKRLIHPGAVSP 252 (354)
T ss_dssp HHHHHHHHHHHHHTTTT----S---SS--THHHHHHHHHTTS-S-TTSS--SS-HHHHHHHHHHH-HHHHHHH-SSS---
T ss_pred HHHHHHHHHHHHhhcCCcccCccChhhCCHHHHHHHHHHHHhcCccccccCCcceehhhHHHhhH-HHHHHHhcCCCccc
Confidence 4556778889999999999975543 35566777777666662111100000000111111222 11111111110
Q ss_pred --CCCCCCCCeeeeehhhHHHHHHHHHhhhhhhhhccccCC-cccceeeeeeeeeccccccccc
Q psy12868 169 --RSEGEVSPRIIVPSTACLWVLGGYVATGTVMFAEWENWP-ILDSCYFCVTSLCKIGIGDFVP 229 (302)
Q Consensus 169 --~~~~~~~~~~~~~~~~~l~~~~~~~~iga~if~~~e~w~-~~da~Yf~fitltTIGfGDivp 229 (302)
...++.+++........+++.++.+++++.+....+..+ +.|+++=+.-.++|||.+=-++
T Consensus 253 ~~~~~r~i~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lfe~~Sa~gtvGls~G~~ 316 (354)
T PF02386_consen 253 VRFNGRRISEQTVRKAFAFFFLYFIIVFISTLLLSLDGLDFSFFDALFEVISAFGTVGLSLGIT 316 (354)
T ss_dssp --SSS---TTSHHHHHCCHHHHHHHHHHHHHHHHHHHSS-H--HHHHHHHHHHCTT--S--SSS
T ss_pred eeecceeechhhhhhHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcCcCCCCCCC
Confidence 111112222222222233333444556666666555544 6888888888999998754443
No 42
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=76.81 E-value=1.1 Score=36.41 Aligned_cols=57 Identities=16% Similarity=0.321 Sum_probs=42.5
Q ss_pred CCChhhhhHhhheeEEeeecceeccCCccchhhHHHHHHHhHHHHHHHHHHhhHHHHH
Q psy12868 94 IWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVLAQ 151 (302)
Q Consensus 94 ~w~~~~a~~f~~t~~tTiGyG~i~P~T~~gr~~~i~y~~~Gipl~~~~l~~~g~~l~~ 151 (302)
.+++.+++++++.+++. +-++..|++..+|++.+++.++.+-+....-+.+...++.
T Consensus 42 ~~~~~~~~~~~~~~~~~-q~~~~~~~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~ 98 (148)
T PF00060_consen 42 RFSLSNSFWYTFGTLLQ-QGSSIRPRSWSGRILLAFWWLFSLILIASYTANLTSFLTV 98 (148)
T ss_dssp HHHHHHHHHHCCCCCHH-HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccHHHHHHHHHHhhcc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 46778899999988887 6688999999999999999999998888877777766653
No 43
>KOG0499|consensus
Probab=76.05 E-value=3.3 Score=42.05 Aligned_cols=55 Identities=20% Similarity=0.423 Sum_probs=40.6
Q ss_pred cCCcccceeeeeeeeecccccccccCCCcCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12868 205 NWPILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLGMGLIAMCFDLMREDV 269 (302)
Q Consensus 205 ~w~~~da~Yf~fitltTIGfGDivp~~~~~~~~~~~~~~~~~~~~~il~Gl~l~~~~~~~i~~~~ 269 (302)
|-.|+-++||+.-|++||| |.--|.+. .-.+|..+--+.|+-.++.+++-|.+-+
T Consensus 401 Gn~YiRCyyfa~kt~~tiG-~~P~P~~~---------~E~Vf~~~~w~mGVFvFslliGQmRDvi 455 (815)
T KOG0499|consen 401 GNEYIRCYYFAVKTLITIG-GLPEPQTL---------FEIVFQLLNWFMGVFVFSLLIGQMRDVI 455 (815)
T ss_pred CCceeeehhhHHHHHHHhc-CCCCcchH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4589999999999999999 55444432 2246666666789988888888776555
No 44
>KOG0499|consensus
Probab=75.98 E-value=1.6 Score=44.23 Aligned_cols=56 Identities=20% Similarity=0.378 Sum_probs=49.4
Q ss_pred ChhhhhHhhheeEEeeecceeccCCccchhhHHHHHHHhHHHHHHHHHHhhHHHHHH
Q psy12868 96 SFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVLAQS 152 (302)
Q Consensus 96 ~~~~a~~f~~t~~tTiGyG~i~P~T~~gr~~~i~y~~~Gipl~~~~l~~~g~~l~~~ 152 (302)
.|.-.+||+.-|+|||| |+..|.|..-=+|..+=-+.|+-.+.++++.+.+.++..
T Consensus 403 ~YiRCyyfa~kt~~tiG-~~P~P~~~~E~Vf~~~~w~mGVFvFslliGQmRDvi~aA 458 (815)
T KOG0499|consen 403 EYIRCYYFAVKTLITIG-GLPEPQTLFEIVFQLLNWFMGVFVFSLLIGQMRDVIGAA 458 (815)
T ss_pred ceeeehhhHHHHHHHhc-CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45678999999999999 999999988888888888899999999999999887643
No 45
>PRK05482 potassium-transporting ATPase subunit A; Provisional
Probab=75.37 E-value=1.6 Score=44.07 Aligned_cols=38 Identities=21% Similarity=0.231 Sum_probs=29.3
Q ss_pred hhhhhHhhheeEEeee-cceec-cCCccchhhHHHHHHHh
Q psy12868 97 FPAALMFSLSIFTMIG-YGNMV-PRTLLGKATTVVYAVFG 134 (302)
Q Consensus 97 ~~~a~~f~~t~~tTiG-yG~i~-P~T~~gr~~~i~y~~~G 134 (302)
..+|+|-+.|+-||-| +-.+. --|+.|.++.++..++|
T Consensus 329 ~~salF~svTtrtTaG~fNsm~dsltp~~~lv~m~lMfIG 368 (559)
T PRK05482 329 AASALFAVVTTAASTGAVNAMHDSLTPLGGLVPLLNMQLG 368 (559)
T ss_pred HHHHHHHHHHhhhhcchHHHHHHhhccHHHHHHHHHHHhC
Confidence 5688899999988988 44442 34778888888888886
No 46
>KOG4440|consensus
Probab=57.68 E-value=4.6 Score=41.23 Aligned_cols=59 Identities=22% Similarity=0.411 Sum_probs=50.7
Q ss_pred CccCCChhhhhHhhheeEEeeecceeccCCccchhhHHHHHHHhHHHHHHHHHHhhHHH
Q psy12868 91 VHEIWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVL 149 (302)
Q Consensus 91 ~~~~w~~~~a~~f~~t~~tTiGyG~i~P~T~~gr~~~i~y~~~Gipl~~~~l~~~g~~l 149 (302)
.++.-++.+|+||+.-++---|-|.-+|++...|++.|+|+=|.+.+..-.-++++.++
T Consensus 608 ee~alnlssAmWF~WGVLLNSGigEgtPRSfSARvLGmVWaGFaMIiVASYTANLAAFL 666 (993)
T KOG4440|consen 608 EEDALNLSSAMWFSWGVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASYTANLAAFL 666 (993)
T ss_pred hhhhcchhhhHHHHhHhhhccccCCCCCcchhHHHHHHHHhhhheeeehhhhhhhhhhe
Confidence 45679999999999999999999999999999999999999888777666666666544
No 47
>PRK10750 potassium transporter; Provisional
Probab=57.02 E-value=11 Score=37.67 Aligned_cols=121 Identities=15% Similarity=0.167 Sum_probs=59.0
Q ss_pred CChhhhhHhhheeEEeeecceecc------CCccchhhHHHHHHHhHHHHHHHHHHh-hHHHHHHHHHHHHHHhhhcccC
Q psy12868 95 WSFPAALMFSLSIFTMIGYGNMVP------RTLLGKATTVVYAVFGIPLYVLYFRNM-GKVLAQSFRWLYTWLYECTMED 167 (302)
Q Consensus 95 w~~~~a~~f~~t~~tTiGyG~i~P------~T~~gr~~~i~y~~~Gipl~~~~l~~~-g~~l~~~~~~~~~~~~~~~~~~ 167 (302)
-++.||+|=+++-+||.|-=-..+ .-..-|-++-..+=+||..+.+.+-.. |.-- ..+ .+.....
T Consensus 96 ~s~~dA~FEs~Sg~TTTGaTvl~~~~~~p~sil~WRs~~qWiGGlGiivl~vail~~lg~~~----~~l----~~aE~~g 167 (483)
T PRK10750 96 LTITDAFFESFSGLTTTGATTLVGLDSLPHAILFYRQMLQWFGGMGIIVLAVAILPILGVGG----MQL----YRAEMPG 167 (483)
T ss_pred CCHHHHHHHHHHhccccchhccCChhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----hhe----eecccCC
Confidence 578999999999999999432222 122234444444445554443333211 1000 001 1111101
Q ss_pred c-CCCCCCCCeeeeehhhHHHHHHHHHhhhhhhhhccccCCcccceeeeeeeeeccccc
Q psy12868 168 R-RSEGEVSPRIIVPSTACLWVLGGYVATGTVMFAEWENWPILDSCYFCVTSLCKIGIG 225 (302)
Q Consensus 168 ~-~~~~~~~~~~~~~~~~~l~~~~~~~~iga~if~~~e~w~~~da~Yf~fitltTIGfG 225 (302)
+ ++++ ...++.........+-+.+..++++.+. ..+-+++||+..++.+++|=||-
T Consensus 168 ~~~~~~-~~p~i~~ta~~l~~iY~~lT~~~~~ll~-~~Gm~~fdAi~ha~saisTgGFs 224 (483)
T PRK10750 168 PLKDNK-MRPRIAETAKTLWLIYVLLTVACALALW-FAGMDAFDAIGHSFSTIAIGGFS 224 (483)
T ss_pred CCcccc-cchhHHHHHHHHHHHHHHHHHHHHHHHH-HcCCcHHHHHHHHHHHHhccCcC
Confidence 1 0011 1111111111122223333344444443 36788999999999999998884
No 48
>KOG3676|consensus
Probab=53.67 E-value=80 Score=33.39 Aligned_cols=61 Identities=20% Similarity=0.223 Sum_probs=35.7
Q ss_pred Ccccceeeeeeee--ecccccccccCCCcCCCcCCcchh-hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12868 207 PILDSCYFCVTSL--CKIGIGDFVPGANILDSKSGHHIK-LIINFIYLLLGMGLIAMCFDLMREDVRV 271 (302)
Q Consensus 207 ~~~da~Yf~fitl--tTIGfGDivp~~~~~~~~~~~~~~-~~~~~~~il~Gl~l~~~~~~~i~~~~~~ 271 (302)
+..|++.-.+.|+ .|||+||.....+.. +.... .++...-+++-+-++-|.|..+++.+..
T Consensus 586 ~~~ds~~~~~l~lf~ftig~~dl~~~~~~~----~~~~~kilfv~y~ilv~ILllNMLIAMMg~Ty~~ 649 (782)
T KOG3676|consen 586 NPYDSFSTFLLTLFEFTIGMGDLEACENTD----YPVLFKILFVAYMILVTILLLNMLIAMMGNTYET 649 (782)
T ss_pred ChhhHHHHHHHHHHHHhhhhhhhhhccccc----chHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 3456655556666 699999987665421 22222 2333333445556667788877766643
No 49
>COG4709 Predicted membrane protein [Function unknown]
Probab=52.90 E-value=1.6e+02 Score=25.77 Aligned_cols=18 Identities=17% Similarity=0.383 Sum_probs=10.9
Q ss_pred hHHHHHHHhHHHHHHHHH
Q psy12868 126 TTVVYAVFGIPLYVLYFR 143 (302)
Q Consensus 126 ~~i~y~~~Gipl~~~~l~ 143 (302)
..++=+++|+|+....+.
T Consensus 88 L~~~~v~i~Lpl~~~vi~ 105 (195)
T COG4709 88 LGLLAVIIGLPLLIGVIL 105 (195)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345556777777665543
No 50
>PF04694 Corona_3: Coronavirus ORF3 protein; InterPro: IPR006784 This family represents the Coronavirus ORF3 protein, also known as the X2A protein.
Probab=48.48 E-value=12 Score=25.54 Aligned_cols=22 Identities=50% Similarity=0.738 Sum_probs=16.0
Q ss_pred Ccccceeeeee---------eeecccccccc
Q psy12868 207 PILDSCYFCVT---------SLCKIGIGDFV 228 (302)
Q Consensus 207 ~~~da~Yf~fi---------tltTIGfGDiv 228 (302)
+-+|..||+++ -+-.|||||-.
T Consensus 16 deld~~yfavtlkvef~tgkllVcigFGDTl 46 (60)
T PF04694_consen 16 DELDCAYFAVTLKVEFKTGKLLVCIGFGDTL 46 (60)
T ss_pred hhhcceeEEEEEEEEEecCcEEEEEecchHH
Confidence 44689999875 34579999954
No 51
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=40.50 E-value=1.3e+02 Score=31.40 Aligned_cols=47 Identities=19% Similarity=0.365 Sum_probs=22.5
Q ss_pred ecccccccccCCCcCCCcCCcchhhhHHHHHHH-HHHHHHHHHHHHHHHHHH
Q psy12868 220 CKIGIGDFVPGANILDSKSGHHIKLIINFIYLL-LGMGLIAMCFDLMREDVR 270 (302)
Q Consensus 220 tTIGfGDivp~~~~~~~~~~~~~~~~~~~~~il-~Gl~l~~~~~~~i~~~~~ 270 (302)
+++|.||+....+.. ......++..+|++ .-+.++-|++..+.+.++
T Consensus 569 ~~~G~~~~~~~~~~~----~~~~~~il~~~y~~i~~ilLlNlLIAmm~~t~~ 616 (743)
T TIGR00870 569 AIIGLGDLLANEHKF----TEFVGLLLFGAYNVIMYILLLNMLIAMMGNTYQ 616 (743)
T ss_pred HHcCCcccccccccc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 468888874332211 11122233333333 334555566666666554
No 52
>TIGR00934 2a38euk potassium uptake protein, Trk family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system. This family is specific for the eukaryotic Trk system.
Probab=37.24 E-value=41 Score=35.66 Aligned_cols=23 Identities=13% Similarity=0.120 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHhHHHhhcCC
Q psy12868 7 VGGLIVGYAVVGAFSFSWIETKE 29 (302)
Q Consensus 7 l~~llv~Y~~~GA~iF~~lE~~~ 29 (302)
+++.+++..++|.++|..+|-.+
T Consensus 587 ll~tt~iL~~ig~ilf~lLE~nn 609 (800)
T TIGR00934 587 LFFTLVGLNAIDLILFIILDWGS 609 (800)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCc
Confidence 45556778889999999999644
No 53
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=36.11 E-value=1.5e+02 Score=20.59 Aligned_cols=14 Identities=21% Similarity=0.503 Sum_probs=6.1
Q ss_pred HHHHHHHHHHhhhh
Q psy12868 270 RVKVRNLKTDIGLC 283 (302)
Q Consensus 270 ~~~~~~~~~~~~~~ 283 (302)
+.+.++.+++.++.
T Consensus 47 r~~~~~~~k~l~~l 60 (68)
T PF06305_consen 47 RRRIRRLRKELKKL 60 (68)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444433
No 54
>PRK09609 hypothetical protein; Provisional
Probab=36.02 E-value=2.2e+02 Score=26.82 Aligned_cols=126 Identities=14% Similarity=0.169 Sum_probs=58.2
Q ss_pred HHHHHHHHHhHHHhhcCCchhhHHHHHHHHHHHHHHHHhhhhhccccCccchhhhHHHHHHHHHHHHHHHHHcCCCCCCC
Q psy12868 12 VGYAVVGAFSFSWIETKEERPQIARVEDLTNKTVLKLWEITVYYNIMNKTSWQNACDETLLIYQKNLTHQVKDGYDGRTV 91 (302)
Q Consensus 12 v~Y~~~GA~iF~~lE~~~e~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~ 91 (302)
++|-++|.++|..+..-.+.+.+.+.-+.+-+..++..+.. .+..+.++ .+..++.+.-|++........+.+ ..
T Consensus 91 lI~Glf~~~~fk~~~~~f~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~-~~~~~~ki~~~~~k~~~~~~~~~~--~~ 165 (312)
T PRK09609 91 FIPGIVGWFFFKFGKKFFGKESRIKRYDNKIFKQKEQYDFA--LENPNSEK-IQKIKQKIILLEKKKKKLEKTNEE--KS 165 (312)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH--hcCCCcHH-HHHHHHHHHHHHHHHHHHHhcCCc--ch
Confidence 55667888999988876665543322111112222111111 11112222 445555555566555544333221 11
Q ss_pred ccCCChhhhhHh--h--heeEEeeecceec-----cCCccchhhHHHHHHHhHHHHHHHH
Q psy12868 92 HEIWSFPAALMF--S--LSIFTMIGYGNMV-----PRTLLGKATTVVYAVFGIPLYVLYF 142 (302)
Q Consensus 92 ~~~w~~~~a~~f--~--~t~~tTiGyG~i~-----P~T~~gr~~~i~y~~~Gipl~~~~l 142 (302)
-.+-++..|... . ...++++|+++.. |+=---|...+.+..+|--+|...+
T Consensus 166 ~ln~~~i~a~ii~~~i~l~i~~~~~~~~~~~~~~~~~fi~~~~~~~~l~~~G~~~m~if~ 225 (312)
T PRK09609 166 LLNFSWIAALIILVIIILFIYFVVGFLDPDFFIQSFSFIKNKRSLMILIISGFILMIIFV 225 (312)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHcCChHhhhhccccccchHHHHHHHHHHHHHHHHHH
Confidence 112222222221 1 1235667777432 1223356667777778877776655
No 55
>PLN03223 Polycystin cation channel protein; Provisional
Probab=32.02 E-value=1.1e+02 Score=34.59 Aligned_cols=26 Identities=8% Similarity=0.083 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12868 245 IINFIYLLLGMGLIAMCFDLMREDVR 270 (302)
Q Consensus 245 ~~~~~~il~Gl~l~~~~~~~i~~~~~ 270 (302)
.|..+.+++.+.++-|++.++.+.+.
T Consensus 1398 YFfSFILLV~FILLNMFIAII~DSFs 1423 (1634)
T PLN03223 1398 YFYSYNIFVFMILFNFLLAIICDAFG 1423 (1634)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445666778888888877665
No 56
>KOG3599|consensus
Probab=30.64 E-value=3.1e+02 Score=29.43 Aligned_cols=27 Identities=4% Similarity=0.064 Sum_probs=17.8
Q ss_pred CccchhhHHHHHHHhHHHHHHHHHHhh
Q psy12868 120 TLLGKATTVVYAVFGIPLYVLYFRNMG 146 (302)
Q Consensus 120 T~~gr~~~i~y~~~Gipl~~~~l~~~g 146 (302)
|..-+.=.+.-.+.|++++++.+....
T Consensus 544 ~~~a~~~~~~~~l~a~lvfl~tiK~~k 570 (798)
T KOG3599|consen 544 TEVAQWNIAARNLLAFLVFLTTIKLWK 570 (798)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556667788888888876553
No 57
>COG0168 TrkG Trk-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=30.17 E-value=1e+02 Score=31.01 Aligned_cols=37 Identities=22% Similarity=0.115 Sum_probs=24.1
Q ss_pred hhhhHhhheeEEeeecceeccCCccchhhHHHHHHHh
Q psy12868 98 PAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFG 134 (302)
Q Consensus 98 ~~a~~f~~t~~tTiGyG~i~P~T~~gr~~~i~y~~~G 134 (302)
.++++-+.+.+||-|.=.........|.+.+.-..+|
T Consensus 91 ~~a~fe~lS~~tttg~t~~~g~~~~p~~il~~r~~l~ 127 (499)
T COG0168 91 TDALFEGLSGVTTTGATVLFGLDSLPQSILFWRSQLG 127 (499)
T ss_pred cceEEeeeceEecCCceEecCCccccHHHHHHHHHHC
Confidence 5788888888888885544444445576666555543
No 58
>cd00930 Cyt_c_Oxidase_VIII Cytochrome oxidase c subunit VIII. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit VIII is the smallest of the nuclear-encoded subunits. It exists in muscle-specific and non-muscle-specific isoforms that are differently expressed in different species, suggesting species-specific regulation of energy metabolism.
Probab=29.74 E-value=71 Score=20.98 Aligned_cols=23 Identities=13% Similarity=0.411 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHHHHhHHHhhc
Q psy12868 5 VGVGGLIVGYAVVGAFSFSWIET 27 (302)
Q Consensus 5 ~~l~~llv~Y~~~GA~iF~~lE~ 27 (302)
+|+.++.+.++..-||+...||.
T Consensus 17 igl~~~f~~~L~p~gWVLshL~~ 39 (43)
T cd00930 17 IGLSVFFTTFLLPAGWVLSHLEN 39 (43)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHH
Confidence 68889999999999999999994
No 59
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=29.49 E-value=43 Score=26.77 Aligned_cols=54 Identities=15% Similarity=0.155 Sum_probs=34.5
Q ss_pred CcccceeeeeeeeecccccccccCCCcCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12868 207 PILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLGMGLIAMCFDLMREDVR 270 (302)
Q Consensus 207 ~~~da~Yf~fitltTIGfGDivp~~~~~~~~~~~~~~~~~~~~~il~Gl~l~~~~~~~i~~~~~ 270 (302)
++.+++|+++.++.. +-++..|.+. ..|++...|.++.+.+.+..-+.+...+.
T Consensus 44 ~~~~~~~~~~~~~~~-q~~~~~~~s~---------s~Ril~~~w~l~~lil~~~Yta~L~s~Lt 97 (148)
T PF00060_consen 44 SLSNSFWYTFGTLLQ-QGSSIRPRSW---------SGRILLAFWWLFSLILIASYTANLTSFLT 97 (148)
T ss_dssp HHHHHHHHCCCCCHH-HHH------H---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhhcc-ccccccccch---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 467788888877776 5566666644 34688889989888887776666655543
No 60
>COG3772 Phage-related lysozyme (muraminidase) [General function prediction only]
Probab=27.65 E-value=31 Score=29.06 Aligned_cols=17 Identities=29% Similarity=0.311 Sum_probs=12.7
Q ss_pred EeeecceeccCCccchh
Q psy12868 109 TMIGYGNMVPRTLLGKA 125 (302)
Q Consensus 109 tTiGyG~i~P~T~~gr~ 125 (302)
.|||||+..|....|.-
T Consensus 33 ~TIgyGhT~~~v~pg~t 49 (152)
T COG3772 33 WTIGYGHTGKPVGPGMT 49 (152)
T ss_pred EEEecCCcCCCCCCCcc
Confidence 79999999875544443
No 61
>PRK06771 hypothetical protein; Provisional
Probab=26.94 E-value=2.9e+02 Score=21.30 Aligned_cols=40 Identities=8% Similarity=0.203 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q psy12868 248 FIYLLLGMGLIAMCFDLMREDVRVKVRNLKTDIGLCFEVI 287 (302)
Q Consensus 248 ~~~il~Gl~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 287 (302)
++.+++|+.+++.-++-+......+++++..+.....++.
T Consensus 7 i~~~~~~~i~i~~~l~~~~~~~~~~~k~ie~~L~~I~~~~ 46 (93)
T PRK06771 7 IPIAIFGFIYIVEKLTKIEKKTDARLKRMEDRLQLITKEM 46 (93)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3455677777776666666666677777777776666664
No 62
>PF06624 RAMP4: Ribosome associated membrane protein RAMP4; InterPro: IPR010580 This entry contains Serp1/Ramp4, which has been shown to interacts with target proteins during their translocation into the lumen of the endoplasmic reticulum. It has also been shown to protect unfolded target proteins against degradation during ER stress. It may facilitate glycosylation of target proteins after termination of ER stress and may modulate the use of N-glycosylation sites on target proteins [, ].
Probab=26.76 E-value=61 Score=23.07 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=18.4
Q ss_pred eehhhHHHHHHHHHhhhhhhhhcc
Q psy12868 180 VPSTACLWVLGGYVATGTVMFAEW 203 (302)
Q Consensus 180 ~~~~~~l~~~~~~~~iga~if~~~ 203 (302)
.|+.-.++.+++|+++|+++|...
T Consensus 35 ~pVgp~~L~l~iFVV~Gs~ifqii 58 (63)
T PF06624_consen 35 YPVGPWLLGLFIFVVCGSAIFQII 58 (63)
T ss_pred CCcCHHHHhhhheeeEcHHHHHHH
Confidence 466666677888999999998754
No 63
>PF04835 Pox_A9: A9 protein conserved region; InterPro: IPR006920 This entry represents a family of Chordopoxvirus A9 proteins. Chordopoxvirus belongs to the family Poxviridae and is the cause of vertebrate infections [].
Probab=25.14 E-value=67 Score=22.07 Aligned_cols=26 Identities=8% Similarity=0.088 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHHHHHhHHHhhcCCc
Q psy12868 5 VGVGGLIVGYAVVGAFSFSWIETKEE 30 (302)
Q Consensus 5 ~~l~~llv~Y~~~GA~iF~~lE~~~e 30 (302)
+..++-.+.|+++|-.+..--+.+.+
T Consensus 27 ik~vismimylilGi~L~yis~~~~~ 52 (54)
T PF04835_consen 27 IKSVISMIMYLILGIALIYISSNDDK 52 (54)
T ss_pred HHHHHHHHHHHHHHHHHhhhccCccc
Confidence 44567789999999888876555443
No 64
>PF07077 DUF1345: Protein of unknown function (DUF1345); InterPro: IPR009781 This family consists of several hypothetical bacterial proteins of around 230 residues in length. The function of this family is unknown.
Probab=24.43 E-value=69 Score=27.62 Aligned_cols=51 Identities=8% Similarity=0.006 Sum_probs=44.1
Q ss_pred ccCCChhhhhHhhheeEEeeecceeccCCccchhhHHHHHHHhHHHHHHHH
Q psy12868 92 HEIWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYF 142 (302)
Q Consensus 92 ~~~w~~~~a~~f~~t~~tTiGyG~i~P~T~~gr~~~i~y~~~Gipl~~~~l 142 (302)
++.-+|.|=+||++++=||-.--|+.|.|..-|-.....+++..-.....+
T Consensus 128 ~~~P~y~DFlYfsftiG~t~q~SDv~v~s~~~Rr~vl~hsllSF~Fnt~il 178 (180)
T PF07077_consen 128 DWEPDYWDFLYFSFTIGMTFQTSDVNVTSRRMRRLVLLHSLLSFFFNTVIL 178 (180)
T ss_pred CCCCCchhhhHHHHHHHhhccccCCCcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 455678888999999999999999999999999999999998876666554
No 65
>KOG1054|consensus
Probab=23.35 E-value=38 Score=34.73 Aligned_cols=58 Identities=26% Similarity=0.401 Sum_probs=43.4
Q ss_pred CccCCChhhhhHhhheeEEeeecceeccCCccchhhHHHHHHHhHHHHHHHHHHhhHHH
Q psy12868 91 VHEIWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVL 149 (302)
Q Consensus 91 ~~~~w~~~~a~~f~~t~~tTiGyG~i~P~T~~gr~~~i~y~~~Gipl~~~~l~~~g~~l 149 (302)
+.......+++||+...+--=| -|+.|++-.||+..-+|=+|-..+.--.-++++.+|
T Consensus 590 ~~NeFgifNsLWFsLgAFMQQG-~DI~PRslSGRIvggvWWFFTlIIiSSYTANLAAFL 647 (897)
T KOG1054|consen 590 PPNEFGIFNSLWFSLGAFMQQG-CDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFL 647 (897)
T ss_pred CCccchhhHHHHHHHHHHHhcC-CCCCccccccceeccchhhhhhhhhhhhhhHHHHHH
Confidence 4556888999999987766666 489999999999988887776655554455555443
No 66
>KOG0721|consensus
Probab=21.29 E-value=2e+02 Score=25.75 Aligned_cols=73 Identities=10% Similarity=0.127 Sum_probs=32.4
Q ss_pred hHHHHHHHhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhcccCcCCCCCCCCeeeeehhhHHHHHHHHHhhhhhhhhcc
Q psy12868 126 TTVVYAVFGIPLYVLYFRNMGKVLAQSFRWLYTWLYECTMEDRRSEGEVSPRIIVPSTACLWVLGGYVATGTVMFAEW 203 (302)
Q Consensus 126 ~~i~y~~~Gipl~~~~l~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iga~if~~~ 203 (302)
+..+++++-+|.+...+.. ......+......+.|.+.++...+..++ ..+...-+++++.|++++-+++...
T Consensus 18 lls~~~~i~~P~Ty~~i~~---~~~~~~~~~~c~c~~c~~~r~~~~~~~~k--~~~~~~~i~lv~~W~v~~fL~y~i~ 90 (230)
T KOG0721|consen 18 LLSFLAIILLPMTYLLIPR---NPEPPKRKEECQCHGCDKKRRKKAKVSPK--SISTKRKVFLVVGWAVIAFLIYKIM 90 (230)
T ss_pred HHHHHHHHHHHHHHHHhcc---ccchhhhhhHHhhhhhhhhhhhhcccCcc--cchhHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666666766666551 11111122222223343333322222222 2233334556666766666666544
No 67
>COG3114 CcmD Heme exporter protein D [Intracellular trafficking and secretion]
Probab=20.99 E-value=3.3e+02 Score=19.57 Aligned_cols=23 Identities=17% Similarity=0.548 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy12868 248 FIYLLLGMGLIAMCFDLMREDVR 270 (302)
Q Consensus 248 ~~~il~Gl~l~~~~~~~i~~~~~ 270 (302)
.+|+-+|+++++++..++.+-.+
T Consensus 18 yVWlA~~~tll~l~~l~v~sv~q 40 (67)
T COG3114 18 YVWLAVGMTLLPLAVLVVHSVLQ 40 (67)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999988876554
No 68
>KOG3491|consensus
Probab=20.47 E-value=2.3e+02 Score=19.88 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=17.4
Q ss_pred ehhhHHHHHHHHHhhhhhhhhccc
Q psy12868 181 PSTACLWVLGGYVATGTVMFAEWE 204 (302)
Q Consensus 181 ~~~~~l~~~~~~~~iga~if~~~e 204 (302)
|..-.++.+++|+++|+++|....
T Consensus 36 pvgPwLlglFvFVVcGSa~FqIIr 59 (65)
T KOG3491|consen 36 PVGPWLLGLFVFVVCGSALFQIIR 59 (65)
T ss_pred CcchHHHHHHHHHhhcHHHHHHHH
Confidence 333346677788899999998654
No 69
>KOG2736|consensus
Probab=20.26 E-value=1.2e+02 Score=29.38 Aligned_cols=26 Identities=19% Similarity=0.529 Sum_probs=20.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy12868 243 KLIINFIYLLLGMGLIAMCFDLMRED 268 (302)
Q Consensus 243 ~~~~~~~~il~Gl~l~~~~~~~i~~~ 268 (302)
..+.|++-|++|+++.-+.++.-++.
T Consensus 345 TviAC~vaIL~GL~~TL~llsv~~kA 370 (406)
T KOG2736|consen 345 TVIACFVAILIGLCLTLLLLSVFKKA 370 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35778889999999988888875543
Done!