Query psy12868
Match_columns 302
No_of_seqs 238 out of 2190
Neff 7.4
Searched_HMMs 29240
Date Fri Aug 16 21:49:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12868.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12868hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3um7_A Potassium channel subfa 100.0 3.5E-49 1.2E-53 364.7 12.1 246 5-270 33-284 (309)
2 3ukm_A Potassium channel subfa 100.0 4.7E-49 1.6E-53 359.0 8.5 248 2-270 11-262 (280)
3 3ldc_A Calcium-gated potassium 99.7 7.2E-18 2.5E-22 126.5 2.8 80 181-269 2-81 (82)
4 2q67_A Potassium channel prote 99.7 1.2E-17 4.2E-22 133.0 3.7 79 183-270 25-103 (114)
5 3eff_K Voltage-gated potassium 99.7 2.6E-17 8.8E-22 135.4 3.1 79 183-270 9-94 (139)
6 3vou_A ION transport 2 domain 99.7 8.6E-17 3E-21 133.7 6.0 78 181-267 26-103 (148)
7 3ouf_A Potassium channel prote 99.6 3E-17 1E-21 127.0 2.7 82 181-271 6-87 (97)
8 2k1e_A Water soluble analogue 99.6 4.6E-17 1.6E-21 127.3 3.7 83 183-274 9-98 (103)
9 3eff_K Voltage-gated potassium 99.6 1.7E-16 5.9E-21 130.4 6.7 63 93-155 37-99 (139)
10 3ldc_A Calcium-gated potassium 99.6 3.6E-16 1.2E-20 117.2 6.3 55 95-149 27-81 (82)
11 2k1e_A Water soluble analogue 99.6 1.4E-15 4.9E-20 118.7 7.0 59 94-152 38-96 (103)
12 2a9h_A Voltage-gated potassium 99.6 1.5E-16 5E-21 133.3 0.6 80 186-274 56-142 (155)
13 3ouf_A Potassium channel prote 99.6 3.2E-15 1.1E-19 115.6 6.0 57 94-150 30-86 (97)
14 2ih3_C Voltage-gated potassium 99.6 5.3E-15 1.8E-19 119.0 7.5 61 93-153 58-118 (122)
15 2ih3_C Voltage-gated potassium 99.5 1.5E-15 5.2E-20 122.2 3.5 79 187-274 34-119 (122)
16 4h33_A LMO2059 protein; bilaye 99.5 5.4E-16 1.9E-20 127.3 -0.7 68 194-270 30-97 (137)
17 2q67_A Potassium channel prote 99.5 9.4E-15 3.2E-19 116.2 6.1 57 93-149 46-102 (114)
18 2a9h_A Voltage-gated potassium 99.5 4.2E-15 1.5E-19 124.4 4.3 58 94-151 82-139 (155)
19 3pjs_K KCSA, voltage-gated pot 99.5 2.5E-16 8.7E-21 133.3 -4.7 70 188-266 41-117 (166)
20 3vou_A ION transport 2 domain 99.5 5E-14 1.7E-18 116.9 7.0 54 94-147 50-103 (148)
21 3um7_A Potassium channel subfa 99.5 3E-14 1E-18 131.4 4.7 66 206-280 114-179 (309)
22 4h33_A LMO2059 protein; bilaye 99.4 2.7E-14 9.1E-19 117.2 2.4 58 93-150 40-97 (137)
23 3pjs_K KCSA, voltage-gated pot 99.4 6.4E-14 2.2E-18 118.5 0.9 61 92-152 63-123 (166)
24 1lnq_A MTHK channels, potassiu 99.4 5.5E-15 1.9E-19 137.7 -6.4 76 187-271 25-100 (336)
25 3ukm_A Potassium channel subfa 99.3 2.1E-13 7.3E-18 124.0 2.1 58 206-272 92-149 (280)
26 1orq_C Potassium channel; volt 99.3 1.6E-12 5.4E-17 114.3 6.1 59 93-151 162-220 (223)
27 1orq_C Potassium channel; volt 99.3 6.8E-13 2.3E-17 116.7 2.7 78 186-272 137-221 (223)
28 4gx0_A TRKA domain protein; me 99.3 4.6E-13 1.6E-17 133.1 -0.3 101 186-295 24-134 (565)
29 3beh_A MLL3241 protein; transm 99.1 3.2E-11 1.1E-15 113.0 4.3 81 186-275 133-220 (355)
30 1xl4_A Inward rectifier potass 99.1 7.7E-12 2.6E-16 115.3 -0.6 56 206-270 81-136 (301)
31 1p7b_A Integral membrane chann 99.1 1.8E-11 6.2E-16 114.1 1.1 69 193-270 75-150 (333)
32 3beh_A MLL3241 protein; transm 99.0 3.3E-10 1.1E-14 106.0 7.2 60 95-154 160-219 (355)
33 4gx0_A TRKA domain protein; me 99.0 1.6E-10 5.4E-15 114.8 4.8 57 94-150 49-106 (565)
34 2r9r_B Paddle chimera voltage 99.0 1.1E-10 3.6E-15 115.2 2.7 78 207-296 375-452 (514)
35 1lnq_A MTHK channels, potassiu 99.0 3.5E-11 1.2E-15 111.9 -1.2 61 92-152 41-101 (336)
36 1xl4_A Inward rectifier potass 98.9 1.6E-10 5.4E-15 106.5 1.7 59 92-150 78-136 (301)
37 2qks_A KIR3.1-prokaryotic KIR 98.9 2.3E-10 7.8E-15 106.3 2.5 59 93-151 75-133 (321)
38 1p7b_A Integral membrane chann 98.9 4.9E-10 1.7E-14 104.5 2.9 59 93-151 93-151 (333)
39 2qks_A KIR3.1-prokaryotic KIR 98.9 7.1E-10 2.4E-14 102.9 3.8 58 205-271 76-133 (321)
40 2r9r_B Paddle chimera voltage 98.5 2.6E-08 9.1E-13 98.0 3.3 63 92-154 371-433 (514)
41 3sya_A G protein-activated inw 98.4 9.3E-08 3.2E-12 89.1 4.1 59 207-272 91-149 (340)
42 3sya_A G protein-activated inw 98.4 6.6E-08 2.3E-12 90.1 2.6 58 94-151 89-148 (340)
43 3spc_A Inward-rectifier K+ cha 98.3 2.8E-07 9.7E-12 85.9 2.5 56 95-150 93-150 (343)
44 3spc_A Inward-rectifier K+ cha 98.2 5.5E-07 1.9E-11 84.0 4.1 58 207-271 94-151 (343)
45 3rvy_A ION transport protein; 97.8 5.8E-06 2E-10 74.8 2.6 61 207-272 180-242 (285)
46 3rvy_A ION transport protein; 97.0 0.00018 6.3E-09 64.8 1.3 60 94-153 178-243 (285)
47 3pjz_A Potassium uptake protei 90.4 0.18 6E-06 49.1 3.8 151 96-254 306-467 (494)
48 4dxw_A Navrh, ION transport pr 86.5 0.16 5.6E-06 43.7 0.6 60 207-270 165-224 (229)
49 3kg2_A Glutamate receptor 2; I 78.6 0.84 2.9E-05 46.2 2.3 58 93-151 560-617 (823)
50 3kg2_A Glutamate receptor 2; I 74.6 2.2 7.4E-05 43.1 4.0 53 208-270 564-616 (823)
51 4dxw_A Navrh, ION transport pr 60.6 3.9 0.00013 34.7 2.2 43 92-134 161-207 (229)
52 2lx0_A Membrane fusion protein 21.6 1.2E+02 0.0041 17.1 3.5 20 8-27 12-31 (32)
No 1
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=100.00 E-value=3.5e-49 Score=364.69 Aligned_cols=246 Identities=25% Similarity=0.408 Sum_probs=193.9
Q ss_pred hHHHHHHHHHHHHHHHhHHHhhcCCchhhHHHHHHHHHHHHHHHHhhhhhccccCccchhhhHHHHHHHHHHHHHHHHHc
Q psy12868 5 VGVGGLIVGYAVVGAFSFSWIETKEERPQIARVEDLTNKTVLKLWEITVYYNIMNKTSWQNACDETLLIYQKNLTHQVKD 84 (302)
Q Consensus 5 ~~l~~llv~Y~~~GA~iF~~lE~~~e~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~ 84 (302)
..|+++.++|+++||.+|++||+|+|.+.++++++.|+++++ +++++++ +.++++.+.+.++.+.
T Consensus 33 l~Ll~~~~~YL~~GA~vF~~LE~~~E~~~~~~l~~~~~~fl~-------~~~~~~~--------~~l~~l~~~v~~A~~~ 97 (309)
T 3um7_A 33 LALLALVLLYLVSGALVFRALEQPHEQQAQRELGEVREKFLR-------AHPCVSD--------QELGLLIKEVADALGG 97 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHGGGTS-------SCCCSCS--------HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH-------hcccccH--------HHHHHHHHHHHHHHhc
Confidence 457888999999999999999999999887777666665544 2344443 4577778888888888
Q ss_pred CCCCC------CCccCCChhhhhHhhheeEEeeecceeccCCccchhhHHHHHHHhHHHHHHHHHHhhHHHHHHHHHHHH
Q psy12868 85 GYDGR------TVHEIWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVLAQSFRWLYT 158 (302)
Q Consensus 85 ~~~~~------~~~~~w~~~~a~~f~~t~~tTiGyG~i~P~T~~gr~~~i~y~~~Gipl~~~~l~~~g~~l~~~~~~~~~ 158 (302)
|.+.. +..++|+|.+|+||+++++|||||||++|.|+.||+||++|+++|||++++.++.+++.+.+..++..+
T Consensus 98 Gv~~~~~~~~~~~~~~w~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~~~~~~~i~ 177 (309)
T 3um7_A 98 GADPETQSTSQSSHSAWDLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLGSSLRHGIG 177 (309)
T ss_dssp TCCCSSCCCC-----CCSHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred CCCccccccCCCCCCCCChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 76542 234679999999999999999999999999999999999999999999999999999999988877665
Q ss_pred HHhhhcccCcCCCCCCCCeeeeehhhHHHHHHHHHhhhhhhhhccccCCcccceeeeeeeeecccccccccCCCcCCCcC
Q psy12868 159 WLYECTMEDRRSEGEVSPRIIVPSTACLWVLGGYVATGTVMFAEWENWPILDSCYFCVTSLCKIGIGDFVPGANILDSKS 238 (302)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iga~if~~~e~w~~~da~Yf~fitltTIGfGDivp~~~~~~~~~ 238 (302)
++.++..+++.+ +...+........++..++++++|+++|...|+|+|.||+||+++|+|||||||++|.++.|+
T Consensus 178 ~le~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~l~~ga~~~~~~E~~~~~da~y~~~vTltTvGyGd~~p~t~~g~--- 252 (309)
T 3um7_A 178 HIEAIFLKWHVP--PELVRVLSAMLFLLIGCLLFVLTPTFVFCYMEDWSKLEAIYFVIVTLTTVGFGDYVAGADPRQ--- 252 (309)
T ss_dssp HHHHHHTTTC----CCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCCCHHHHHHHHHHHHTTCCCSSCCTTCCTTC---
T ss_pred HHHHHHhccccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhheeccccCCCCCCCcccc---
Confidence 554433222110 011111111122334456788899999999999999999999999999999999999998775
Q ss_pred CcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12868 239 GHHIKLIINFIYLLLGMGLIAMCFDLMREDVR 270 (302)
Q Consensus 239 ~~~~~~~~~~~~il~Gl~l~~~~~~~i~~~~~ 270 (302)
.++.|++++++|+++|+++++++++.+.+.+.
T Consensus 253 ~~~~y~~~~~~~il~Gl~~~a~~~~~i~~~~~ 284 (309)
T 3um7_A 253 DSPAYQPLVWFWILLGLAYFASVLTTIGNWLR 284 (309)
T ss_dssp CCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 24678899999999999999999999887664
No 2
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=100.00 E-value=4.7e-49 Score=359.02 Aligned_cols=248 Identities=22% Similarity=0.316 Sum_probs=189.7
Q ss_pred CchhHHHHHHHHHHHHHHHhHHHhhcCCchhhHHHHHHHHHHHHHHHHhhhhhccccCccchhhhHHHHHHHHHHHHHHH
Q psy12868 2 CTQVGVGGLIVGYAVVGAFSFSWIETKEERPQIARVEDLTNKTVLKLWEITVYYNIMNKTSWQNACDETLLIYQKNLTHQ 81 (302)
Q Consensus 2 ~~h~~l~~llv~Y~~~GA~iF~~lE~~~e~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 81 (302)
+.|..|++..++|+++||++|++||+|+|.+.+++.++.|++++++ +++.+ ++.++++.+++.++
T Consensus 11 ~~l~lLil~~~~Yl~~GA~vF~~LE~p~E~~~r~~~~~~~~~fl~~-------~~~~s--------~~~l~~~~~~~~~a 75 (280)
T 3ukm_A 11 TMFGFLVLGYLLYLVFGAVVFSSVELPYEDLLRQELRKLKRRFLEE-------HECLS--------EQQLEQFLGRVLEA 75 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------CTTCC--------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHh-------ccccc--------HHHHHHHHHHHHHH
Confidence 5678888889999999999999999999999888888888877763 22333 34567777777777
Q ss_pred HHcCCCCC---CCccCCChhhhhHhhheeEEeeecceeccCCccchhhHHHHHHHhHHHHHHHHHHhhHHHHHHHHHHHH
Q psy12868 82 VKDGYDGR---TVHEIWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVLAQSFRWLYT 158 (302)
Q Consensus 82 ~~~~~~~~---~~~~~w~~~~a~~f~~t~~tTiGyG~i~P~T~~gr~~~i~y~~~Gipl~~~~l~~~g~~l~~~~~~~~~ 158 (302)
.+.|.+.. +..+.|+|.+|+||+++++|||||||++|.|+.||+|+++|+++|||++++.++.+++.+.....+
T Consensus 76 ~~~g~~~~~~~~~~~~w~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l~~~~~~--- 152 (280)
T 3ukm_A 76 SNYGVSVLSQASGNWNWDFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRITVHVTR--- 152 (280)
T ss_dssp HTTTCCCC------CCSSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS---
T ss_pred HhcCCccccCCCCCCCCChhcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 77765432 345789999999999999999999999999999999999999999999999999999887664321
Q ss_pred HHhhhcccCcCCCCCCCCeeeeehhhHHHHHHHHHhhhhhhhhccc-cCCcccceeeeeeeeecccccccccCCCcCCCc
Q psy12868 159 WLYECTMEDRRSEGEVSPRIIVPSTACLWVLGGYVATGTVMFAEWE-NWPILDSCYFCVTSLCKIGIGDFVPGANILDSK 237 (302)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iga~if~~~e-~w~~~da~Yf~fitltTIGfGDivp~~~~~~~~ 237 (302)
+..+..+++ ...++............++++++++++||++|...| +|+|.||+|||++|+|||||||++|.++.++
T Consensus 153 ~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~ga~~~~~~E~~~s~~da~y~~~iTltTvGyGD~~p~t~~~~-- 229 (280)
T 3ukm_A 153 RPVLYFHIR-WGFSKQVVAIVHAVLLGFVTVSCFFFIPAAVFSVLEDDWNFLESFYFCFISLSTIGLGDYVPGEGYNQ-- 229 (280)
T ss_dssp TTTTTC-------CCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCCCCSCCSSCSSSC--
T ss_pred HHHHHHHHH-hcCChhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCchhhhhhheeeeeecccCCCCCCCCCccc--
Confidence 100000000 000000000111122234456678889999999998 9999999999999999999999999998763
Q ss_pred CCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12868 238 SGHHIKLIINFIYLLLGMGLIAMCFDLMREDVR 270 (302)
Q Consensus 238 ~~~~~~~~~~~~~il~Gl~l~~~~~~~i~~~~~ 270 (302)
.+...+++++++|+++|++++++.++.+.+...
T Consensus 230 ~~~~l~r~~~~~~il~Gl~~~~~~~~~i~~~~~ 262 (280)
T 3ukm_A 230 KFRELYKIGITCYLLLGLIAMLVVLETFCELHE 262 (280)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567899999999999999999999887554
No 3
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=99.68 E-value=7.2e-18 Score=126.52 Aligned_cols=80 Identities=23% Similarity=0.377 Sum_probs=70.6
Q ss_pred ehhhHHHHHHHHHhhhhhhhhccccCCcccceeeeeeeeecccccccccCCCcCCCcCCcchhhhHHHHHHHHHHHHHHH
Q psy12868 181 PSTACLWVLGGYVATGTVMFAEWENWPILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLGMGLIAM 260 (302)
Q Consensus 181 ~~~~~l~~~~~~~~iga~if~~~e~w~~~da~Yf~fitltTIGfGDivp~~~~~~~~~~~~~~~~~~~~~il~Gl~l~~~ 260 (302)
|....+.+++.+++.|+++|...|+|++.||+||+++|+|||||||++|.++.+ ++++.+++++|++++++
T Consensus 2 ~~~~~~~l~~~~~~~g~~~~~~~e~~~~~~a~yf~~~T~tTvGyGdi~P~t~~~---------r~~~~~~~~~G~~~~~~ 72 (82)
T 3ldc_A 2 PATRILLLVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSPHTPLG---------MYFTCTLIVLGIGTFAV 72 (82)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTTCCCCSSCCCSHHH---------HHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcccCCCCCCCCCccH---------HHHHHHHHHHHHHHHHH
Confidence 444556677778899999999999999999999999999999999999997655 58999999999999999
Q ss_pred HHHHHHHHH
Q psy12868 261 CFDLMREDV 269 (302)
Q Consensus 261 ~~~~i~~~~ 269 (302)
+++.+.+.+
T Consensus 73 ~~~~i~~~l 81 (82)
T 3ldc_A 73 AVERLLEFL 81 (82)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999887653
No 4
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=99.68 E-value=1.2e-17 Score=132.97 Aligned_cols=79 Identities=23% Similarity=0.478 Sum_probs=70.0
Q ss_pred hhHHHHHHHHHhhhhhhhhccccCCcccceeeeeeeeecccccccccCCCcCCCcCCcchhhhHHHHHHHHHHHHHHHHH
Q psy12868 183 TACLWVLGGYVATGTVMFAEWENWPILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLGMGLIAMCF 262 (302)
Q Consensus 183 ~~~l~~~~~~~~iga~if~~~e~w~~~da~Yf~fitltTIGfGDivp~~~~~~~~~~~~~~~~~~~~~il~Gl~l~~~~~ 262 (302)
...+.++++++.+|+++|...|+|++.||+||+++|+|||||||++|.+..| ++++.+++++|++++++++
T Consensus 25 ~~~~~~~~~~~~~g~~~~~~~e~~~~~~a~y~~~~T~tTvGyGdi~P~t~~g---------r~~~~~~~~~G~~~~~~~~ 95 (114)
T 2q67_A 25 QVLFVLTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGAGNFSPQTDFG---------KIFTILYIFIGIGLVFGFI 95 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHTSCCCSSCCCCSHHH---------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhcceeCCCCccCCHhH---------HHHHHHHHHHHHHHHHHHH
Confidence 4455566677889999999999999999999999999999999999997655 5899999999999999999
Q ss_pred HHHHHHHH
Q psy12868 263 DLMREDVR 270 (302)
Q Consensus 263 ~~i~~~~~ 270 (302)
+.+.+.+.
T Consensus 96 ~~l~~~~~ 103 (114)
T 2q67_A 96 HKLAVNVQ 103 (114)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 99987763
No 5
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=99.65 E-value=2.6e-17 Score=135.38 Aligned_cols=79 Identities=13% Similarity=0.145 Sum_probs=68.9
Q ss_pred hhHHHHHHHHHhhhhhhhhcccc-------CCcccceeeeeeeeecccccccccCCCcCCCcCCcchhhhHHHHHHHHHH
Q psy12868 183 TACLWVLGGYVATGTVMFAEWEN-------WPILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLGM 255 (302)
Q Consensus 183 ~~~l~~~~~~~~iga~if~~~e~-------w~~~da~Yf~fitltTIGfGDivp~~~~~~~~~~~~~~~~~~~~~il~Gl 255 (302)
..++++++++++++|.++...|+ |+|.||+||+++|+|||||||++|.+..| ++++++++++|+
T Consensus 9 ~~~~~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~~a~yf~~~T~tTvGyGd~~P~t~~~---------r~~~~~~~~~G~ 79 (139)
T 3eff_K 9 GAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWG---------RLVAVVVMVAGI 79 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSSCTTCCCCCHHHHHHHHHHHHTTCCCSSSCCCSSHH---------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCHHHHHHHHheeeecccCCCCcCCCcCH---------HHHHHHHHHHHH
Confidence 34556677788899999999997 99999999999999999999999998765 589999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy12868 256 GLIAMCFDLMREDVR 270 (302)
Q Consensus 256 ~l~~~~~~~i~~~~~ 270 (302)
++++++++.+.+.+.
T Consensus 80 ~~~~~~~~~i~~~~~ 94 (139)
T 3eff_K 80 TSFGLVTAALATWFV 94 (139)
T ss_dssp HHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999998765443
No 6
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=99.65 E-value=8.6e-17 Score=133.67 Aligned_cols=78 Identities=22% Similarity=0.431 Sum_probs=68.3
Q ss_pred ehhhHHHHHHHHHhhhhhhhhccccCCcccceeeeeeeeecccccccccCCCcCCCcCCcchhhhHHHHHHHHHHHHHHH
Q psy12868 181 PSTACLWVLGGYVATGTVMFAEWENWPILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLGMGLIAM 260 (302)
Q Consensus 181 ~~~~~l~~~~~~~~iga~if~~~e~w~~~da~Yf~fitltTIGfGDivp~~~~~~~~~~~~~~~~~~~~~il~Gl~l~~~ 260 (302)
+....+.+++++++.|+++|...|+|+|.||+||+++|+|||||||++|.+..| ++++.+++++|++++++
T Consensus 26 ~~~~~~~~~~~~~~~g~~~~~~~e~~~~~~a~y~~~~t~tTvGyGd~~p~t~~~---------r~~~~~~~~~g~~~~~~ 96 (148)
T 3vou_A 26 EFQVLFVLTFLTLTSGTIFYSTVEGLRPLDALYFSVVTLTTVGDGNFSPQTDFG---------KVFTILYIFIGIGLVFG 96 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHTTCCCSSCCCCSHHH---------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccCCCCCCCCCccH---------HHHHHHHHHHHHHHHHH
Confidence 344455667778889999999999999999999999999999999999997655 59999999999999999
Q ss_pred HHHHHHH
Q psy12868 261 CFDLMRE 267 (302)
Q Consensus 261 ~~~~i~~ 267 (302)
+++.+.+
T Consensus 97 ~~~~~~~ 103 (148)
T 3vou_A 97 FIHKLAV 103 (148)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 9997764
No 7
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=99.65 E-value=3e-17 Score=127.01 Aligned_cols=82 Identities=23% Similarity=0.465 Sum_probs=72.0
Q ss_pred ehhhHHHHHHHHHhhhhhhhhccccCCcccceeeeeeeeecccccccccCCCcCCCcCCcchhhhHHHHHHHHHHHHHHH
Q psy12868 181 PSTACLWVLGGYVATGTVMFAEWENWPILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLGMGLIAM 260 (302)
Q Consensus 181 ~~~~~l~~~~~~~~iga~if~~~e~w~~~da~Yf~fitltTIGfGDivp~~~~~~~~~~~~~~~~~~~~~il~Gl~l~~~ 260 (302)
+....+.++++++.+|+++|...|+|+|.||+||+++|+|||||||++|.+..| ++++.+++++|++++++
T Consensus 6 ~~~~~~~~~~~~~~~g~~~~~~~e~~~~~~a~yf~~~T~tTvGyGdi~P~t~~g---------r~~~~~~~~~G~~~~~~ 76 (97)
T 3ouf_A 6 EFQVLFVLTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGYGDFSPQTDFG---------KIFTILYIFIGIGLVFG 76 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHTTCCCCSSCCCSHHH---------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccCCCCCCCCCccH---------HHHHHHHHHHHHHHHHH
Confidence 344455666778889999999999999999999999999999999999997655 58999999999999999
Q ss_pred HHHHHHHHHHH
Q psy12868 261 CFDLMREDVRV 271 (302)
Q Consensus 261 ~~~~i~~~~~~ 271 (302)
+++.+.+.++.
T Consensus 77 ~i~~i~~~~~~ 87 (97)
T 3ouf_A 77 FIHKLAVNVQL 87 (97)
T ss_dssp HHHHHHHHTHH
T ss_pred HHHHHHHHHhH
Confidence 99999887753
No 8
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=99.65 E-value=4.6e-17 Score=127.29 Aligned_cols=83 Identities=14% Similarity=0.106 Sum_probs=71.9
Q ss_pred hhHHHHHHHHHhhhhhhhhccccC-------CcccceeeeeeeeecccccccccCCCcCCCcCCcchhhhHHHHHHHHHH
Q psy12868 183 TACLWVLGGYVATGTVMFAEWENW-------PILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLGM 255 (302)
Q Consensus 183 ~~~l~~~~~~~~iga~if~~~e~w-------~~~da~Yf~fitltTIGfGDivp~~~~~~~~~~~~~~~~~~~~~il~Gl 255 (302)
...+..+++++++++.+|...|+| +|.||+||+++|+|||||||++|.+..+ ++++.+++++|+
T Consensus 9 l~~~~~~~~~~~~~a~~~~~~E~~~~~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~g---------r~~~~~~~l~G~ 79 (103)
T 2k1e_A 9 QKAEEELQKVLEEASKKAVEAERGAPGAALISYPDAIWWSVETATTVGYGDRYPVTEEG---------RKVAEQVMKAGI 79 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSTTCCCCCGGGTTTTTTGGGGCCSCCSSCCCSSSC---------THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhccCCCCcccccHHHHHHHHHHHHhcccCCCCCCCChhH---------HHHHHHHHHHHH
Confidence 334556677788999999999987 8999999999999999999999998877 489999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy12868 256 GLIAMCFDLMREDVRVKVR 274 (302)
Q Consensus 256 ~l~~~~~~~i~~~~~~~~~ 274 (302)
.+++++++.+.+.+.++.+
T Consensus 80 ~~~~~~~~~i~~~~~~~~~ 98 (103)
T 2k1e_A 80 EVFALVTAALATDFVRREE 98 (103)
T ss_dssp HHHHHTHHHHHTTGGGHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999877765443
No 9
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=99.64 E-value=1.7e-16 Score=130.42 Aligned_cols=63 Identities=29% Similarity=0.466 Sum_probs=58.3
Q ss_pred cCCChhhhhHhhheeEEeeecceeccCCccchhhHHHHHHHhHHHHHHHHHHhhHHHHHHHHH
Q psy12868 93 EIWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVLAQSFRW 155 (302)
Q Consensus 93 ~~w~~~~a~~f~~t~~tTiGyG~i~P~T~~gr~~~i~y~~~Gipl~~~~l~~~g~~l~~~~~~ 155 (302)
..|+|.+|+||+++|+|||||||++|.|+.||+++++++++|++++.+.++.++..+.+..+.
T Consensus 37 ~~~~~~~a~yf~~~T~tTvGyGd~~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~~~~~~~~ 99 (139)
T 3eff_K 37 QLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQE 99 (139)
T ss_dssp CCCCHHHHHHHHHHHHTTCCCSSSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTTTHHHHH
T ss_pred ccCCHHHHHHHHheeeecccCCCCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 359999999999999999999999999999999999999999999999999999988765443
No 10
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=99.62 E-value=3.6e-16 Score=117.21 Aligned_cols=55 Identities=25% Similarity=0.459 Sum_probs=52.8
Q ss_pred CChhhhhHhhheeEEeeecceeccCCccchhhHHHHHHHhHHHHHHHHHHhhHHH
Q psy12868 95 WSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVL 149 (302)
Q Consensus 95 w~~~~a~~f~~t~~tTiGyG~i~P~T~~gr~~~i~y~~~Gipl~~~~l~~~g~~l 149 (302)
|++.+|+||+.+++|||||||++|.|+.||+++++|+++|++++...++.+++.+
T Consensus 27 ~~~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~l 81 (82)
T 3ldc_A 27 ESWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFL 81 (82)
T ss_dssp CCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999999999999999999999988764
No 11
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=99.59 E-value=1.4e-15 Score=118.71 Aligned_cols=59 Identities=24% Similarity=0.417 Sum_probs=55.5
Q ss_pred CCChhhhhHhhheeEEeeecceeccCCccchhhHHHHHHHhHHHHHHHHHHhhHHHHHH
Q psy12868 94 IWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVLAQS 152 (302)
Q Consensus 94 ~w~~~~a~~f~~t~~tTiGyG~i~P~T~~gr~~~i~y~~~Gipl~~~~l~~~g~~l~~~ 152 (302)
.|+|.+|+||+++++|||||||++|.|+.||+++++++++|++++.+.++.+++.+.+.
T Consensus 38 ~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~l~G~~~~~~~~~~i~~~~~~~ 96 (103)
T 2k1e_A 38 LISYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALVTAALATDFVRR 96 (103)
T ss_dssp CCCGGGTTTTTTGGGGCCSCCSSCCCSSSCTHHHHHHHHHHHHHHHHTHHHHHTTGGGH
T ss_pred cccHHHHHHHHHHHHhcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999998877654
No 12
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=99.58 E-value=1.5e-16 Score=133.34 Aligned_cols=80 Identities=14% Similarity=0.155 Sum_probs=69.7
Q ss_pred HHHHHHHHhhhhhhhhccccC-------CcccceeeeeeeeecccccccccCCCcCCCcCCcchhhhHHHHHHHHHHHHH
Q psy12868 186 LWVLGGYVATGTVMFAEWENW-------PILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLGMGLI 258 (302)
Q Consensus 186 l~~~~~~~~iga~if~~~e~w-------~~~da~Yf~fitltTIGfGDivp~~~~~~~~~~~~~~~~~~~~~il~Gl~l~ 258 (302)
++.++++++++|.++...|+| ++.||+||+++|+|||||||++|.+..| ++++.+++++|++++
T Consensus 56 ~~~~~~~i~~~a~~~~~~E~~~~~~~~~s~~~a~y~s~vTltTVGYGDi~P~t~~g---------r~~~~~~~l~Gv~~~ 126 (155)
T 2a9h_A 56 TVLLVIVLLAGSYLAVLAERGAPGAALISYPDALWWSVETATTVGYGDLYPVTLWG---------RCVAVVVMVAGITSY 126 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSCSSTTSHHHHHHHHHHHHTTCCCSSSCCCSHHH---------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCccCcccceeheeeeeeecccCCCCCCCChhH---------HHHHHHHHHHHHHHH
Confidence 344566778899999999988 8999999999999999999999998765 589999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q psy12868 259 AMCFDLMREDVRVKVR 274 (302)
Q Consensus 259 ~~~~~~i~~~~~~~~~ 274 (302)
+++++.+.+.+.++.+
T Consensus 127 a~~~~~i~~~~~~~~~ 142 (155)
T 2a9h_A 127 GLVFAAVATWFVGREQ 142 (155)
T ss_dssp HHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999988865433
No 13
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=99.56 E-value=3.2e-15 Score=115.55 Aligned_cols=57 Identities=30% Similarity=0.482 Sum_probs=54.3
Q ss_pred CCChhhhhHhhheeEEeeecceeccCCccchhhHHHHHHHhHHHHHHHHHHhhHHHH
Q psy12868 94 IWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVLA 150 (302)
Q Consensus 94 ~w~~~~a~~f~~t~~tTiGyG~i~P~T~~gr~~~i~y~~~Gipl~~~~l~~~g~~l~ 150 (302)
+|++.+|+||+.+++|||||||++|.|+.||+++++|+++|++++...++.+++.+.
T Consensus 30 ~~~~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~i~~i~~~~~ 86 (97)
T 3ouf_A 30 GLRPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQ 86 (97)
T ss_dssp CCCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred CCCHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 399999999999999999999999999999999999999999999999999987765
No 14
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=99.56 E-value=5.3e-15 Score=118.98 Aligned_cols=61 Identities=26% Similarity=0.439 Sum_probs=57.0
Q ss_pred cCCChhhhhHhhheeEEeeecceeccCCccchhhHHHHHHHhHHHHHHHHHHhhHHHHHHH
Q psy12868 93 EIWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVLAQSF 153 (302)
Q Consensus 93 ~~w~~~~a~~f~~t~~tTiGyG~i~P~T~~gr~~~i~y~~~Gipl~~~~l~~~g~~l~~~~ 153 (302)
..|++.+|+||+++++|||||||++|.|+.||+++++++++|++++.+.++.+++.+.+..
T Consensus 58 ~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~~~ 118 (122)
T 2ih3_C 58 QLITYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGRE 118 (122)
T ss_dssp CCCSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCccccchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4599999999999999999999999999999999999999999999999999988877643
No 15
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=99.55 E-value=1.5e-15 Score=122.21 Aligned_cols=79 Identities=9% Similarity=0.101 Sum_probs=68.6
Q ss_pred HHHHHHHhhhhhhhhcccc-------CCcccceeeeeeeeecccccccccCCCcCCCcCCcchhhhHHHHHHHHHHHHHH
Q psy12868 187 WVLGGYVATGTVMFAEWEN-------WPILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLGMGLIA 259 (302)
Q Consensus 187 ~~~~~~~~iga~if~~~e~-------w~~~da~Yf~fitltTIGfGDivp~~~~~~~~~~~~~~~~~~~~~il~Gl~l~~ 259 (302)
..+++.+.+++.++...|+ |++.||+||+++|+|||||||++|.+..| ++++.+++++|+++++
T Consensus 34 ~~~~~~~~~~a~~~~~~E~~~~~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~g---------r~~~~~~~~~Gi~~~~ 104 (122)
T 2ih3_C 34 VLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWACETATTVAYGDLYPVTLWG---------RLVAVVVMVAGITSFG 104 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSTTCCCCSHHHHHHHHHHHHTTCCCSSSCCCSHHH---------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhheeeecCCCCccCccccchhheeeeeeeeecCCCCCCCccH---------HHHHHHHHHHHHHHHH
Confidence 3445566788888888887 99999999999999999999999998765 5899999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy12868 260 MCFDLMREDVRVKVR 274 (302)
Q Consensus 260 ~~~~~i~~~~~~~~~ 274 (302)
+.++.+.+.+.++.+
T Consensus 105 ~~~~~i~~~~~~~~~ 119 (122)
T 2ih3_C 105 LVTAALATWFVGREQ 119 (122)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999988876544
No 16
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=99.53 E-value=5.4e-16 Score=127.29 Aligned_cols=68 Identities=25% Similarity=0.369 Sum_probs=57.1
Q ss_pred hhhhhhhhccccCCcccceeeeeeeeecccccccccCCCcCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12868 194 ATGTVMFAEWENWPILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLGMGLIAMCFDLMREDVR 270 (302)
Q Consensus 194 ~iga~if~~~e~w~~~da~Yf~fitltTIGfGDivp~~~~~~~~~~~~~~~~~~~~~il~Gl~l~~~~~~~i~~~~~ 270 (302)
+.++..+...|.|+|.||+||+++|+|||||||++|.+..| ++++.+++++|+++++++++.+.+.+.
T Consensus 30 ~~~~~~~~e~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~g---------r~~~~~~~~~g~~~~~~~~~~i~~~~~ 97 (137)
T 4h33_A 30 IPVPMVFIEPEINNYPDALWWAIVTATTVGYGDIVPVTPIG---------RILASIMMLFGIAFIGMITSTITNFFR 97 (137)
T ss_dssp THHHHHHHCSSCCSHHHHHHHHHHHHTTCCCSSSCCCSHHH---------HHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHcccCCCCCCCCHhH---------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445699999999999999999999999998766 589999999999999999999886553
No 17
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=99.52 E-value=9.4e-15 Score=116.19 Aligned_cols=57 Identities=32% Similarity=0.455 Sum_probs=54.0
Q ss_pred cCCChhhhhHhhheeEEeeecceeccCCccchhhHHHHHHHhHHHHHHHHHHhhHHH
Q psy12868 93 EIWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVL 149 (302)
Q Consensus 93 ~~w~~~~a~~f~~t~~tTiGyG~i~P~T~~gr~~~i~y~~~Gipl~~~~l~~~g~~l 149 (302)
++|++.+|+||+++++|||||||++|.|+.||+++++|+++|++++...++.+++.+
T Consensus 46 e~~~~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~~ 102 (114)
T 2q67_A 46 EGLRPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNV 102 (114)
T ss_dssp SCCCHHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 359999999999999999999999999999999999999999999999999888765
No 18
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=99.52 E-value=4.2e-15 Score=124.41 Aligned_cols=58 Identities=36% Similarity=0.612 Sum_probs=54.6
Q ss_pred CCChhhhhHhhheeEEeeecceeccCCccchhhHHHHHHHhHHHHHHHHHHhhHHHHH
Q psy12868 94 IWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVLAQ 151 (302)
Q Consensus 94 ~w~~~~a~~f~~t~~tTiGyG~i~P~T~~gr~~~i~y~~~Gipl~~~~l~~~g~~l~~ 151 (302)
.+++.+|+||+++|+|||||||++|.|+.||+++++++++|+.++.+.++.++..+.+
T Consensus 82 ~~s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i~~~~~~ 139 (155)
T 2a9h_A 82 LISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFVG 139 (155)
T ss_dssp TTSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cCcccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999999999999999999999999999999999988877664
No 19
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=99.50 E-value=2.5e-16 Score=133.32 Aligned_cols=70 Identities=13% Similarity=0.217 Sum_probs=62.4
Q ss_pred HHHHHHhhhhhhhhcccc-------CCcccceeeeeeeeecccccccccCCCcCCCcCCcchhhhHHHHHHHHHHHHHHH
Q psy12868 188 VLGGYVATGTVMFAEWEN-------WPILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLGMGLIAM 260 (302)
Q Consensus 188 ~~~~~~~iga~if~~~e~-------w~~~da~Yf~fitltTIGfGDivp~~~~~~~~~~~~~~~~~~~~~il~Gl~l~~~ 260 (302)
++++++++++.++...|+ |+|.||+||+++|+|||||||++|.+..|+ +++++++++|++++++
T Consensus 41 ~~~~~~~~~a~~~~~~e~~~~~~~~~~~~~a~yf~~~T~tTvGyGDi~P~t~~~r---------~~~~~~~l~G~~~~~~ 111 (166)
T 3pjs_K 41 LLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGR---------LVAVVVMVAGITSFGL 111 (166)
T ss_dssp SSTTTTTTTSSSSSSTTSSSTTCCCCSTTTTTTTTHHHHSCCCCSSSCCCSSTTT---------TTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcccCCHHHHHHHHHHHhccccCCCCCCCCHhHH---------HHHHHHHHHHHHHHHH
Confidence 345567788888988898 999999999999999999999999988774 8999999999999999
Q ss_pred HHHHHH
Q psy12868 261 CFDLMR 266 (302)
Q Consensus 261 ~~~~i~ 266 (302)
+++.+.
T Consensus 112 ~~~~i~ 117 (166)
T 3pjs_K 112 VTAALA 117 (166)
T ss_dssp HHTTSS
T ss_pred HHHHHH
Confidence 999754
No 20
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=99.47 E-value=5e-14 Score=116.90 Aligned_cols=54 Identities=31% Similarity=0.464 Sum_probs=52.3
Q ss_pred CCChhhhhHhhheeEEeeecceeccCCccchhhHHHHHHHhHHHHHHHHHHhhH
Q psy12868 94 IWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGK 147 (302)
Q Consensus 94 ~w~~~~a~~f~~t~~tTiGyG~i~P~T~~gr~~~i~y~~~Gipl~~~~l~~~g~ 147 (302)
.|+|.+|+||+++++|||||||++|.|+.||+++++|+++|++++...++.++.
T Consensus 50 ~~~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~ 103 (148)
T 3vou_A 50 GLRPLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAV 103 (148)
T ss_dssp CCCHHHHHHHHHHHHTTCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 599999999999999999999999999999999999999999999999998886
No 21
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=99.45 E-value=3e-14 Score=131.45 Aligned_cols=66 Identities=18% Similarity=0.359 Sum_probs=57.7
Q ss_pred CCcccceeeeeeeeecccccccccCCCcCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12868 206 WPILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLGMGLIAMCFDLMREDVRVKVRNLKTDI 280 (302)
Q Consensus 206 w~~~da~Yf~fitltTIGfGDivp~~~~~~~~~~~~~~~~~~~~~il~Gl~l~~~~~~~i~~~~~~~~~~~~~~~ 280 (302)
|+|.||+||+++|+|||||||++|.+..| ++++++|+++|+++++++++.+.+.+....++..++.
T Consensus 114 w~~~~a~yf~~~t~tTvGYGdi~P~T~~g---------k~~~i~~~l~Gi~~~~~~~~~i~~~l~~~~~~~i~~l 179 (309)
T 3um7_A 114 WDLGSAFFFSGTIITTIGYGNVALRTDAG---------RLFCIFYALVGIPLFGILLAGVGDRLGSSLRHGIGHI 179 (309)
T ss_dssp CSHHHHHHHHHHHHTSCCCCSSCCCSHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred CChhhhhHhhheeeeecccCCCCCCCccc---------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 99999999999999999999999998876 5999999999999999999999888876555544433
No 22
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=99.43 E-value=2.7e-14 Score=117.16 Aligned_cols=58 Identities=28% Similarity=0.573 Sum_probs=55.2
Q ss_pred cCCChhhhhHhhheeEEeeecceeccCCccchhhHHHHHHHhHHHHHHHHHHhhHHHH
Q psy12868 93 EIWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVLA 150 (302)
Q Consensus 93 ~~w~~~~a~~f~~t~~tTiGyG~i~P~T~~gr~~~i~y~~~Gipl~~~~l~~~g~~l~ 150 (302)
+.|+|.+|+||+++|+|||||||++|.|+.||+++++++++|+.++.+.++.+++.+.
T Consensus 40 ~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~ 97 (137)
T 4h33_A 40 EINNYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFR 97 (137)
T ss_dssp SCCSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred CCCCHHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999999999999999999999999999999999999988765
No 23
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=99.37 E-value=6.4e-14 Score=118.49 Aligned_cols=61 Identities=30% Similarity=0.515 Sum_probs=56.5
Q ss_pred ccCCChhhhhHhhheeEEeeecceeccCCccchhhHHHHHHHhHHHHHHHHHHhhHHHHHH
Q psy12868 92 HEIWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVLAQS 152 (302)
Q Consensus 92 ~~~w~~~~a~~f~~t~~tTiGyG~i~P~T~~gr~~~i~y~~~Gipl~~~~l~~~g~~l~~~ 152 (302)
...|+|.+|+||+++|+|||||||++|.|+.||+++++++++|++++.+.++.++..+...
T Consensus 63 ~~~~~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~~ 123 (166)
T 3pjs_K 63 AQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGQ 123 (166)
T ss_dssp CCCCSTTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSSSSSSS
T ss_pred cccCCHHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3459999999999999999999999999999999999999999999999999998877543
No 24
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=99.37 E-value=5.5e-15 Score=137.74 Aligned_cols=76 Identities=20% Similarity=0.329 Sum_probs=65.5
Q ss_pred HHHHHHHhhhhhhhhccccCCcccceeeeeeeeecccccccccCCCcCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHH
Q psy12868 187 WVLGGYVATGTVMFAEWENWPILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLGMGLIAMCFDLMR 266 (302)
Q Consensus 187 ~~~~~~~~iga~if~~~e~w~~~da~Yf~fitltTIGfGDivp~~~~~~~~~~~~~~~~~~~~~il~Gl~l~~~~~~~i~ 266 (302)
+++++++++|+++|...|+|+|.||+||+++|+|||||||++|.+..| ++++.+++++|+++++++++.+.
T Consensus 25 ~~~~~~~~~~~~~~~~~e~~~~~~a~y~~~~t~tTvGyGd~~p~t~~~---------r~~~~~~~~~g~~~~~~~~~~~~ 95 (336)
T 1lnq_A 25 LLVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSPSTPLG---------MYFTVTLIVLGIGTFAVAVERLL 95 (336)
T ss_dssp TTTTTSHHHHTTTTTTSSSCCSSTTHHHHHHHHTTCCCSSCCCCCSSH---------HHHHTHHHHTTSTTTTTHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcccCCCCCCCCcCH---------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556788999999999999999999999999999999999997765 58999999999999999999887
Q ss_pred HHHHH
Q psy12868 267 EDVRV 271 (302)
Q Consensus 267 ~~~~~ 271 (302)
+.+..
T Consensus 96 ~~~~~ 100 (336)
T 1lnq_A 96 EFLIN 100 (336)
T ss_dssp TTC--
T ss_pred HHHHH
Confidence 66653
No 25
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=99.33 E-value=2.1e-13 Score=124.02 Aligned_cols=58 Identities=21% Similarity=0.413 Sum_probs=53.2
Q ss_pred CCcccceeeeeeeeecccccccccCCCcCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12868 206 WPILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLGMGLIAMCFDLMREDVRVK 272 (302)
Q Consensus 206 w~~~da~Yf~fitltTIGfGDivp~~~~~~~~~~~~~~~~~~~~~il~Gl~l~~~~~~~i~~~~~~~ 272 (302)
|+|.||+||+++|+|||||||++|.++.| ++++++|+++|++++.+.++.+.+.+...
T Consensus 92 w~~~~a~yf~~~t~tTvGyGd~~P~T~~G---------k~f~~~~~l~Gi~~~~~~~~~~~~~l~~~ 149 (280)
T 3ukm_A 92 WDFTSALFFASTVLSTTGYGHTVPLSDGG---------KAFCIIYSVIGIPFTLLFLTAVVQRITVH 149 (280)
T ss_dssp SSHHHHHHHHHHHHTTCCCCSSCCCSHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhcchhheeeeeeccccCCcCCCCchh---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998877 59999999999999999999988776544
No 26
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=99.31 E-value=1.6e-12 Score=114.32 Aligned_cols=59 Identities=27% Similarity=0.460 Sum_probs=55.6
Q ss_pred cCCChhhhhHhhheeEEeeecceeccCCccchhhHHHHHHHhHHHHHHHHHHhhHHHHH
Q psy12868 93 EIWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVLAQ 151 (302)
Q Consensus 93 ~~w~~~~a~~f~~t~~tTiGyG~i~P~T~~gr~~~i~y~~~Gipl~~~~l~~~g~~l~~ 151 (302)
..|++.+|+||+++++||+||||++|.|+.||+++++++++|+.++.+.++.+++.+.+
T Consensus 162 ~~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G~~~~~~~i~~i~~~~~~ 220 (223)
T 1orq_C 162 SIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSNMFQK 220 (223)
T ss_dssp SCCSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCcchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35899999999999999999999999999999999999999999999999999887765
No 27
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=99.29 E-value=6.8e-13 Score=116.68 Aligned_cols=78 Identities=18% Similarity=0.265 Sum_probs=67.5
Q ss_pred HHHHHHHHhhhhhhhhcccc-------CCcccceeeeeeeeecccccccccCCCcCCCcCCcchhhhHHHHHHHHHHHHH
Q psy12868 186 LWVLGGYVATGTVMFAEWEN-------WPILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLGMGLI 258 (302)
Q Consensus 186 l~~~~~~~~iga~if~~~e~-------w~~~da~Yf~fitltTIGfGDivp~~~~~~~~~~~~~~~~~~~~~il~Gl~l~ 258 (302)
+..++.++.++|.++...|+ |++.||+||+++|+|||||||++|.+..| ++++.+++++|++++
T Consensus 137 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~---------~~~~~~~~~~G~~~~ 207 (223)
T 1orq_C 137 FGAVMLTVLYGAFAIYIVEYPDPNSSIKSVFDALWWAVVTATTVGYGDVVPATPIG---------KVIGIAVMLTGISAL 207 (223)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSSTTCSCCSHHHHHHHHHHHHTTCCCCSSCCCSHHH---------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCcCCCcCcchhHHHhHHhHHhccCCCCCCCCCHhH---------HHHHHHHHHHHHHHH
Confidence 34455566778888888887 99999999999999999999999997765 589999999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy12868 259 AMCFDLMREDVRVK 272 (302)
Q Consensus 259 ~~~~~~i~~~~~~~ 272 (302)
+++++.+.+.+.++
T Consensus 208 ~~~i~~i~~~~~~~ 221 (223)
T 1orq_C 208 TLLIGTVSNMFQKI 221 (223)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999888654
No 28
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=99.26 E-value=4.6e-13 Score=133.05 Aligned_cols=101 Identities=11% Similarity=0.085 Sum_probs=69.4
Q ss_pred HHHHHHHHhhhhhhhhc----ccc--CCcccceeeeeeeeecccccccccCCCcCCCcCCcchhhhHHHHHHHHHHHHHH
Q psy12868 186 LWVLGGYVATGTVMFAE----WEN--WPILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLGMGLIA 259 (302)
Q Consensus 186 l~~~~~~~~iga~if~~----~e~--w~~~da~Yf~fitltTIGfGDivp~~~~~~~~~~~~~~~~~~~~~il~Gl~l~~ 259 (302)
++.+++.+++++++|.. .|+ |+|.||+||+++|+|||||||++|.+..| ++++++++++|+++++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~y~~~~t~tTvGygd~~p~~~~~---------~~~~~~~~~~g~~~~~ 94 (565)
T 4gx0_A 24 CAFLLVMLLAYASIFRYLMWHLEGRAYSFMAGIYWTITVMTTLGFGDITFESDAG---------YLFASIVTVSGVIFLD 94 (565)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHTTCCCCSSCCCSHHH---------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhhheeeeeeeeecCCCcCCCCccH---------HHHHHHHHHHHHHHHH
Confidence 33444455566665554 566 99999999999999999999999997655 5899999999999999
Q ss_pred HHHHH-HHHHHHH-HHHHHH-H-Hhhhhhhhccchhhccc
Q psy12868 260 MCFDL-MREDVRV-KVRNLK-T-DIGLCFEVIRLRAIACY 295 (302)
Q Consensus 260 ~~~~~-i~~~~~~-~~~~~~-~-~~~~~~~~~~~~~i~~~ 295 (302)
++++. +.+.+.. ..++.. . +.++..++.+.|+++|=
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hviI~G 134 (565)
T 4gx0_A 95 IILPFGFVSMFLAPWIERRLRYHPTIELPDDTRGHILIFG 134 (565)
T ss_dssp THHHHHHHHHHHHHHHHHHTSCCCBCCCCTTCCSCEEEES
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccccccCCeEEEEC
Confidence 98887 3333221 111111 1 12222356677887774
No 29
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=99.10 E-value=3.2e-11 Score=112.99 Aligned_cols=81 Identities=16% Similarity=0.242 Sum_probs=67.9
Q ss_pred HHHHHHHHhhhhhhhhccccC-------CcccceeeeeeeeecccccccccCCCcCCCcCCcchhhhHHHHHHHHHHHHH
Q psy12868 186 LWVLGGYVATGTVMFAEWENW-------PILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLGMGLI 258 (302)
Q Consensus 186 l~~~~~~~~iga~if~~~e~w-------~~~da~Yf~fitltTIGfGDivp~~~~~~~~~~~~~~~~~~~~~il~Gl~l~ 258 (302)
+.++++.+.++|.++...|+| ++.||+||+++|+|||||||++|.+..| ++++.+++++|++++
T Consensus 133 ~~~~~~~~~~~a~~~~~~e~~~~~~~f~~~~~s~y~~~~t~ttvGygd~~p~t~~~---------~~~~~~~~~~g~~~~ 203 (355)
T 3beh_A 133 TTLFGVVLFAVALAAYVIERDIQPEKFGSIPQAMWWAVVTLSTTGYGDTIPQSFAG---------RVLAGAVMMSGIGIF 203 (355)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCHHHHSSHHHHHHHHHHHHTTCCCSSSCCCSHHH---------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCcccccHHHHHHHHHhheeecCCCCCCCCChhH---------HHHHHHHHHHHHHHH
Confidence 344455666788888888875 8999999999999999999999997755 588999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy12868 259 AMCFDLMREDVRVKVRN 275 (302)
Q Consensus 259 ~~~~~~i~~~~~~~~~~ 275 (302)
++.++.+.+.+.+..++
T Consensus 204 ~~~~~~i~~~~~~~~~~ 220 (355)
T 3beh_A 204 GLWAGILATGFYQEVRR 220 (355)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999998888765443
No 30
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=99.09 E-value=7.7e-12 Score=115.27 Aligned_cols=56 Identities=21% Similarity=0.335 Sum_probs=50.9
Q ss_pred CCcccceeeeeeeeecccccccccCCCcCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12868 206 WPILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLGMGLIAMCFDLMREDVR 270 (302)
Q Consensus 206 w~~~da~Yf~fitltTIGfGDivp~~~~~~~~~~~~~~~~~~~~~il~Gl~l~~~~~~~i~~~~~ 270 (302)
++|.||+||+++|+|||||||++|.+..| ++++.+.+++|+.+++++++.+...+.
T Consensus 81 ~s~~~a~yfs~vT~tTvGYGDi~P~t~~g---------r~~~~~~~l~G~~~~a~~~g~v~~~~~ 136 (301)
T 1xl4_A 81 GSFTDAFFFSVQTMATIGYGKLIPIGPLA---------NTLVTLEALCGMLGLAVAASLIYARFT 136 (301)
T ss_dssp TCHHHHHHHHHHHHTTCCCSSSCCCHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHhhhheeccCCCCCcCCCHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999987655 588999999999999999998887764
No 31
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=99.07 E-value=1.8e-11 Score=114.13 Aligned_cols=69 Identities=19% Similarity=0.276 Sum_probs=56.6
Q ss_pred Hhhhhhhhhcc-------ccCCcccceeeeeeeeecccccccccCCCcCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHH
Q psy12868 193 VATGTVMFAEW-------ENWPILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLGMGLIAMCFDLM 265 (302)
Q Consensus 193 ~~iga~if~~~-------e~w~~~da~Yf~fitltTIGfGDivp~~~~~~~~~~~~~~~~~~~~~il~Gl~l~~~~~~~i 265 (302)
++++|++|... +.++|.||+||+++|+|||||||++|.+..| ++++.+++++|+.+++++++.+
T Consensus 75 ~l~fally~~e~~~~~~~~~~s~~~a~yfs~vT~tTVGYGDi~P~t~~g---------r~~~~~~~l~G~~~~a~~ig~i 145 (333)
T 1p7b_A 75 NTLFALLYQLGDAPIANQSPPGFVGAFFFSVETLATVGYGDMHPQTVYA---------HAIATLEIFVGMSGIALSTGLV 145 (333)
T ss_dssp HHHHHTTTSSSSSCCCCSSSSSTHHHHHHHTTTTTTCCCSCCCCCSHHH---------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccCCCCCcHHHhHhhhheeeeecCCCCCcCCCHHH---------HHHHHHHHHHHHHHHHHHHHHH
Confidence 34556665432 1368999999999999999999999997655 5889999999999999999988
Q ss_pred HHHHH
Q psy12868 266 REDVR 270 (302)
Q Consensus 266 ~~~~~ 270 (302)
...+.
T Consensus 146 ~~~~~ 150 (333)
T 1p7b_A 146 FARFA 150 (333)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 87664
No 32
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=99.02 E-value=3.3e-10 Score=106.03 Aligned_cols=60 Identities=22% Similarity=0.450 Sum_probs=55.4
Q ss_pred CChhhhhHhhheeEEeeecceeccCCccchhhHHHHHHHhHHHHHHHHHHhhHHHHHHHH
Q psy12868 95 WSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVLAQSFR 154 (302)
Q Consensus 95 w~~~~a~~f~~t~~tTiGyG~i~P~T~~gr~~~i~y~~~Gipl~~~~l~~~g~~l~~~~~ 154 (302)
.++.+|+||+++|+||+||||++|.|+.||+++++.+++|+.++.+.++.+++.+.+..+
T Consensus 160 ~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~ 219 (355)
T 3beh_A 160 GSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGFYQEVR 219 (355)
T ss_dssp SSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999999999999999999888776543
No 33
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=99.01 E-value=1.6e-10 Score=114.79 Aligned_cols=57 Identities=16% Similarity=0.360 Sum_probs=51.9
Q ss_pred CCChhhhhHhhheeEEeeecceeccCCccchhhHHHHHHHhHHHHHHHHHH-hhHHHH
Q psy12868 94 IWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRN-MGKVLA 150 (302)
Q Consensus 94 ~w~~~~a~~f~~t~~tTiGyG~i~P~T~~gr~~~i~y~~~Gipl~~~~l~~-~g~~l~ 150 (302)
.|+|.+|+||+++|+|||||||++|.|+.||+++++++++|++++.+.++. +.+.+.
T Consensus 49 ~~~~~~~~y~~~~t~tTvGygd~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 106 (565)
T 4gx0_A 49 AYSFMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLDIILPFGFVSMFL 106 (565)
T ss_dssp CCCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred CCchhhhhheeeeeeeeecCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 499999999999999999999999999999999999999999999988876 554443
No 34
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=98.99 E-value=1.1e-10 Score=115.17 Aligned_cols=78 Identities=18% Similarity=0.202 Sum_probs=53.7
Q ss_pred CcccceeeeeeeeecccccccccCCCcCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q psy12868 207 PILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLGMGLIAMCFDLMREDVRVKVRNLKTDIGLCFEV 286 (302)
Q Consensus 207 ~~~da~Yf~fitltTIGfGDivp~~~~~~~~~~~~~~~~~~~~~il~Gl~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 286 (302)
++.||+||+++|+|||||||++|.+..| ++++.+++++|+.+++++++.+.+.+....++.+ .+..++
T Consensus 375 s~~~a~y~~~vT~TTvGYGDi~P~t~~g---------r~f~~~~~l~G~~~l~l~iavI~~~f~~~~~~~~---~~~~~~ 442 (514)
T 2r9r_B 375 SIPDAFWWAVVSMTTVGYGDMVPTTIGG---------KIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRET---EGEEQA 442 (514)
T ss_dssp SHHHHHHHHHHHHTTCCCSSSCCCSHHH---------HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHC---------
T ss_pred chhhhhheeeeEEEecccCCCCCCCcch---------HhhehhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 8899999999999999999999997655 5888999999999999999999988876555322 233466
Q ss_pred ccchhhcccc
Q psy12868 287 IRLRAIACYR 296 (302)
Q Consensus 287 ~~~~~i~~~~ 296 (302)
.+.|++.|-.
T Consensus 443 l~~h~iicg~ 452 (514)
T 2r9r_B 443 QYLQVTSSPK 452 (514)
T ss_dssp ----------
T ss_pred hhCCEEEeCC
Confidence 7788888763
No 35
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=98.98 E-value=3.5e-11 Score=111.88 Aligned_cols=61 Identities=26% Similarity=0.409 Sum_probs=55.3
Q ss_pred ccCCChhhhhHhhheeEEeeecceeccCCccchhhHHHHHHHhHHHHHHHHHHhhHHHHHH
Q psy12868 92 HEIWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVLAQS 152 (302)
Q Consensus 92 ~~~w~~~~a~~f~~t~~tTiGyG~i~P~T~~gr~~~i~y~~~Gipl~~~~l~~~g~~l~~~ 152 (302)
-+.|+|.+|+||+++++|||||||++|.|..||+++++++++|++++.+.++.+.+.+...
T Consensus 41 ~e~~~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (336)
T 1lnq_A 41 IEGESWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINR 101 (336)
T ss_dssp SSSCCSSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC---
T ss_pred HhCCCHHHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3569999999999999999999999999999999999999999999999999998877653
No 36
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=98.94 E-value=1.6e-10 Score=106.49 Aligned_cols=59 Identities=22% Similarity=0.318 Sum_probs=53.5
Q ss_pred ccCCChhhhhHhhheeEEeeecceeccCCccchhhHHHHHHHhHHHHHHHHHHhhHHHH
Q psy12868 92 HEIWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVLA 150 (302)
Q Consensus 92 ~~~w~~~~a~~f~~t~~tTiGyG~i~P~T~~gr~~~i~y~~~Gipl~~~~l~~~g~~l~ 150 (302)
...|+|.+|+||+++|+|||||||++|.|+.||+++++.+++|+.++++.++.+...++
T Consensus 78 ~~~~s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~v~~~~~ 136 (301)
T 1xl4_A 78 ARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFT 136 (301)
T ss_dssp SCTTCHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCcCCHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34699999999999999999999999999999999999999999999998877665554
No 37
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=98.93 E-value=2.3e-10 Score=106.27 Aligned_cols=59 Identities=22% Similarity=0.303 Sum_probs=54.0
Q ss_pred cCCChhhhhHhhheeEEeeecceeccCCccchhhHHHHHHHhHHHHHHHHHHhhHHHHH
Q psy12868 93 EIWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVLAQ 151 (302)
Q Consensus 93 ~~w~~~~a~~f~~t~~tTiGyG~i~P~T~~gr~~~i~y~~~Gipl~~~~l~~~g~~l~~ 151 (302)
..|+|.+|+||+++|+|||||||+.|.|..||+++++.+++|+.++++.++.+...+++
T Consensus 75 ~~~s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~ 133 (321)
T 2qks_A 75 FPAGFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQ 133 (321)
T ss_dssp SSTTHHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCcchhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35899999999999999999999999999999999999999999999988887766554
No 38
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=98.88 E-value=4.9e-10 Score=104.50 Aligned_cols=59 Identities=24% Similarity=0.349 Sum_probs=53.8
Q ss_pred cCCChhhhhHhhheeEEeeecceeccCCccchhhHHHHHHHhHHHHHHHHHHhhHHHHH
Q psy12868 93 EIWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVLAQ 151 (302)
Q Consensus 93 ~~w~~~~a~~f~~t~~tTiGyG~i~P~T~~gr~~~i~y~~~Gipl~~~~l~~~g~~l~~ 151 (302)
..++|.+|+||+++|+|||||||++|.|+.||+++++++++|+.++.+.++.+...+++
T Consensus 93 ~~~s~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~ig~i~~~~~~ 151 (333)
T 1p7b_A 93 SPPGFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFAR 151 (333)
T ss_dssp SSSSTHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred CCCcHHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999988777666553
No 39
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=98.88 E-value=7.1e-10 Score=102.94 Aligned_cols=58 Identities=21% Similarity=0.284 Sum_probs=51.9
Q ss_pred cCCcccceeeeeeeeecccccccccCCCcCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12868 205 NWPILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLGMGLIAMCFDLMREDVRV 271 (302)
Q Consensus 205 ~w~~~da~Yf~fitltTIGfGDivp~~~~~~~~~~~~~~~~~~~~~il~Gl~l~~~~~~~i~~~~~~ 271 (302)
+|+|.||+||+++|+|||||||++|.+..| ++++.+.+++|+.+++++++.+...+.+
T Consensus 76 ~~s~~~a~y~s~vT~tTVGYGDi~P~t~~g---------r~~~~~~~l~G~~~~a~~~g~i~~~~~~ 133 (321)
T 2qks_A 76 PAGFGGAFFFSVETLATVGYGDMHPQTVYA---------HWIATLEIFVGMSSIALATGCAFIKMSQ 133 (321)
T ss_dssp STTHHHHHHHHHHHHTTCCCCSSCBCSHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CcchhheeeeeeEEeccccCCCcCcccHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 579999999999999999999999997755 5889999999999999999998877653
No 40
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=98.54 E-value=2.6e-08 Score=98.04 Aligned_cols=63 Identities=25% Similarity=0.402 Sum_probs=56.5
Q ss_pred ccCCChhhhhHhhheeEEeeecceeccCCccchhhHHHHHHHhHHHHHHHHHHhhHHHHHHHH
Q psy12868 92 HEIWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVLAQSFR 154 (302)
Q Consensus 92 ~~~w~~~~a~~f~~t~~tTiGyG~i~P~T~~gr~~~i~y~~~Gipl~~~~l~~~g~~l~~~~~ 154 (302)
....++.+|+||+++++||+||||+.|.|..||+++++++++|+.++.+.++.+.+.+....+
T Consensus 371 ~~F~s~~~a~y~~~vT~TTvGYGDi~P~t~~gr~f~~~~~l~G~~~l~l~iavI~~~f~~~~~ 433 (514)
T 2r9r_B 371 SQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYH 433 (514)
T ss_dssp CSCSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred ccccchhhhhheeeeEEEecccCCCCCCCcchHhhehhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445789999999999999999999999999999999999999999999999888876665543
No 41
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=98.44 E-value=9.3e-08 Score=89.11 Aligned_cols=59 Identities=19% Similarity=0.180 Sum_probs=49.8
Q ss_pred CcccceeeeeeeeecccccccccCCCcCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12868 207 PILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLGMGLIAMCFDLMREDVRVK 272 (302)
Q Consensus 207 ~~~da~Yf~fitltTIGfGDivp~~~~~~~~~~~~~~~~~~~~~il~Gl~l~~~~~~~i~~~~~~~ 272 (302)
+|.||+||+++|+|||||||+.|.+. .+..+++..+-+++|+.+.+.+.+.+-.++.+.
T Consensus 91 sf~~af~fSv~T~TTvGYGd~~p~~~-------~~~g~~l~~~~~l~G~~l~a~~~giv~ak~srp 149 (340)
T 3sya_A 91 GFVSAFLFSIETETTIGYGYRVITDK-------CPEGIILLLIQSVLGSIVNAFMVGCMFVKISQP 149 (340)
T ss_dssp STTHHHHHHHHHHSCCCCSSSCBCTT-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCG
T ss_pred CHHHHHhhhheeeeeecCCCccCcCc-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 78999999999999999999999742 223458888999999999999999888776543
No 42
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=98.42 E-value=6.6e-08 Score=90.11 Aligned_cols=58 Identities=26% Similarity=0.315 Sum_probs=50.7
Q ss_pred CCChhhhhHhhheeEEeeecceeccC--CccchhhHHHHHHHhHHHHHHHHHHhhHHHHH
Q psy12868 94 IWSFPAALMFSLSIFTMIGYGNMVPR--TLLGKATTVVYAVFGIPLYVLYFRNMGKVLAQ 151 (302)
Q Consensus 94 ~w~~~~a~~f~~t~~tTiGyG~i~P~--T~~gr~~~i~y~~~Gipl~~~~l~~~g~~l~~ 151 (302)
.=+|.+|+||+++|+|||||||++|. |+.|++++.+-+++|+.+.+++.+.+...+++
T Consensus 89 ~~sf~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l~~~~~l~G~~l~a~~~giv~ak~sr 148 (340)
T 3sya_A 89 LNGFVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQ 148 (340)
T ss_dssp CCSTTHHHHHHHHHHSCCCCSSSCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccCHHHHHhhhheeeeeecCCCccCcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 35799999999999999999999997 78999999999999999999888766554443
No 43
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=98.25 E-value=2.8e-07 Score=85.94 Aligned_cols=56 Identities=27% Similarity=0.319 Sum_probs=48.7
Q ss_pred CChhhhhHhhheeEEeeecceecc--CCccchhhHHHHHHHhHHHHHHHHHHhhHHHH
Q psy12868 95 WSFPAALMFSLSIFTMIGYGNMVP--RTLLGKATTVVYAVFGIPLYVLYFRNMGKVLA 150 (302)
Q Consensus 95 w~~~~a~~f~~t~~tTiGyG~i~P--~T~~gr~~~i~y~~~Gipl~~~~l~~~g~~l~ 150 (302)
=+|.+|+||+++|+|||||||++| .|+.|+++..+=+++|+-+.+++.+.+...++
T Consensus 93 ~sf~~af~fSv~T~TTvGYGd~~p~~~~~~~~~l~~~~~l~G~~l~a~~~giv~ak~s 150 (343)
T 3spc_A 93 NGFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMA 150 (343)
T ss_dssp CSHHHHHHHHHHHHSCCCCSSSEECSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHhheeeeeeEeecCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 489999999999999999999997 49999999999999999988888766544433
No 44
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=98.24 E-value=5.5e-07 Score=84.02 Aligned_cols=58 Identities=9% Similarity=0.157 Sum_probs=48.4
Q ss_pred CcccceeeeeeeeecccccccccCCCcCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12868 207 PILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLGMGLIAMCFDLMREDVRV 271 (302)
Q Consensus 207 ~~~da~Yf~fitltTIGfGDivp~~~~~~~~~~~~~~~~~~~~~il~Gl~l~~~~~~~i~~~~~~ 271 (302)
+|.||+||+++|+|||||||+.|... .+..+++..+-.++|+.+++.+.+.+-.++.+
T Consensus 94 sf~~af~fSv~T~TTvGYGd~~p~~~-------~~~~~~l~~~~~l~G~~l~a~~~giv~ak~sr 151 (343)
T 3spc_A 94 GFVAAFLFSIETQTTIGYGFRCVTEE-------CPLAVFMVVVQSIVGCIIDSFMIGAIMAKMAR 151 (343)
T ss_dssp SHHHHHHHHHHHHSCCCCSSSEECSS-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHhheeeeeeEeecCCCccCCCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 78999999999999999999998632 23345788899999999999999988866643
No 45
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=97.83 E-value=5.8e-06 Score=74.84 Aligned_cols=61 Identities=8% Similarity=0.110 Sum_probs=48.3
Q ss_pred Ccccceeeeeeeeeccccc-ccc-cCCCcCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12868 207 PILDSCYFCVTSLCKIGIG-DFV-PGANILDSKSGHHIKLIINFIYLLLGMGLIAMCFDLMREDVRVK 272 (302)
Q Consensus 207 ~~~da~Yf~fitltTIGfG-Div-p~~~~~~~~~~~~~~~~~~~~~il~Gl~l~~~~~~~i~~~~~~~ 272 (302)
++.+|+|+.|+++||+||| |++ |.+..|+ ...+.+..+.++.|+.+++++++.+.+.+...
T Consensus 180 s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~-----~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~~ 242 (285)
T 3rvy_A 180 TLGESFYTLFQVMTLESWSMGIVRPLMEVYP-----YAWVFFIPFIFVVTFVMINLVVAICVDAMAIL 242 (285)
T ss_dssp SHHHHHHHHHHHHTTTTCCCCCHHHHHTTCT-----TTHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHcCC-----hHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999999 997 8876542 23356677788889999999999998877543
No 46
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=96.97 E-value=0.00018 Score=64.83 Aligned_cols=60 Identities=10% Similarity=0.014 Sum_probs=48.7
Q ss_pred CCChhhhhHhhheeEEeeecc-eec-cCCccc----hhhHHHHHHHhHHHHHHHHHHhhHHHHHHH
Q psy12868 94 IWSFPAALMFSLSIFTMIGYG-NMV-PRTLLG----KATTVVYAVFGIPLYVLYFRNMGKVLAQSF 153 (302)
Q Consensus 94 ~w~~~~a~~f~~t~~tTiGyG-~i~-P~T~~g----r~~~i~y~~~Gipl~~~~l~~~g~~l~~~~ 153 (302)
-=|+++|+++++.++||.||| |+. |.|..| +.|.++..+.|+-++.+.++.+.+.+.+..
T Consensus 178 F~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~~~ 243 (285)
T 3rvy_A 178 FGTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVDAMAILN 243 (285)
T ss_dssp HSSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457999999999999999999 996 998876 777888888888888888888887776543
No 47
>3pjz_A Potassium uptake protein TRKH; structural genomics, PSI-2, protein structure initiative, NE consortium on membrane protein structure; 3.51A {Vibrio parahaemolyticus}
Probab=90.42 E-value=0.18 Score=49.13 Aligned_cols=151 Identities=11% Similarity=0.032 Sum_probs=71.8
Q ss_pred ChhhhhHhhheeEEeeeccee--ccCCccchhhHHHHHHHhH-HHHH-HHHHHhhHHHHHHHHHHHHHHhhhcccC----
Q psy12868 96 SFPAALMFSLSIFTMIGYGNM--VPRTLLGKATTVVYAVFGI-PLYV-LYFRNMGKVLAQSFRWLYTWLYECTMED---- 167 (302)
Q Consensus 96 ~~~~a~~f~~t~~tTiGyG~i--~P~T~~gr~~~i~y~~~Gi-pl~~-~~l~~~g~~l~~~~~~~~~~~~~~~~~~---- 167 (302)
.+.+|+|-+.+..||-||... ..-++..+++.++..++|= |-.. --+.. .++.-.++..++.+++..+++
T Consensus 306 ~l~~a~Fq~vS~~TttGF~t~d~~~w~~~~~~ll~~LMfIGG~~GSTaGGIKv--~r~~il~~~~~~el~~~~~P~~v~~ 383 (494)
T 3pjz_A 306 AFDQALFQTVSISTTAGFTTTGFADWPLFLPVLLLFSSFIGGCAGSTGGGMKV--IRILLLTLQGARELKRLVHPRAVYT 383 (494)
T ss_dssp HHHHHHHHHHHTTTTCCCCSCCCSSCCTHHHHHHHHHTTSCSCTTSSCCSSCH--HHHHHHHHHHHHHHHHHHCSSSCCC
T ss_pred HHHHHHHheeecccCCcccccChHhCCHHHHHHHHHHHHHcCCcccCCCchhH--HHHHHHHHHHHHHHhcccCCCccee
Confidence 367888889999999998744 3345556666666666661 1000 00000 011112222222222221111
Q ss_pred -cCCCCCCCCeeeeehhhHHHHHHHHHhhhhhhhhccccCCcccceeeeeeeeecccc--cccccCCCcCCCcCCcchhh
Q psy12868 168 -RRSEGEVSPRIIVPSTACLWVLGGYVATGTVMFAEWENWPILDSCYFCVTSLCKIGI--GDFVPGANILDSKSGHHIKL 244 (302)
Q Consensus 168 -~~~~~~~~~~~~~~~~~~l~~~~~~~~iga~if~~~e~w~~~da~Yf~fitltTIGf--GDivp~~~~~~~~~~~~~~~ 244 (302)
+...++.+++........+++.+..+.+++++... .+-++.+|+.=+..+++|||. |+.-|..+ +-++..+
T Consensus 384 v~~~~r~i~~~~v~~~~~~~~ly~~~~~~~~~~l~~-~g~~~~~a~~~v~Sal~nvG~s~G~vg~~~~-----~L~~~~K 457 (494)
T 3pjz_A 384 IKVGGSALPQRVVDAVWGFFSAYALVFVVCMLGLIA-TGMDELSAFSAVAATLNNLGPGLGEVALHFG-----DVNDKAK 457 (494)
T ss_dssp CCSSSCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHH-HSSCHHHHHHHHHHHTTTCCSCCSSSCCCCS-----SSCHHHH
T ss_pred eeECCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHcCCCCcccccCCCcc-----cCCHHHH
Confidence 11112222222222222222233334455555544 357889998888888999984 54333221 1233344
Q ss_pred hHHHHHHHHH
Q psy12868 245 IINFIYLLLG 254 (302)
Q Consensus 245 ~~~~~~il~G 254 (302)
++..+.+++|
T Consensus 458 ~vl~~~M~~G 467 (494)
T 3pjz_A 458 WVLIVSMLFG 467 (494)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555555
No 48
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=86.52 E-value=0.16 Score=43.68 Aligned_cols=60 Identities=5% Similarity=-0.050 Sum_probs=41.7
Q ss_pred CcccceeeeeeeeecccccccccCCCcCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12868 207 PILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLGMGLIAMCFDLMREDVR 270 (302)
Q Consensus 207 ~~~da~Yf~fitltTIGfGDivp~~~~~~~~~~~~~~~~~~~~~il~Gl~l~~~~~~~i~~~~~ 270 (302)
++.+|++..|.++||.|++|+......+. ......+...+++.+..++.+.+..+.+.+.
T Consensus 165 ~~~~a~~~lf~~~t~~~w~~i~~~~~~~~----~~~~~~f~~~~~i~~~i~lNlfiavi~~~f~ 224 (229)
T 4dxw_A 165 DLGISLITLFQVLTLSSWETVMLPMQEIY----WWSWVYFFSFIIICSITILNLVIAILVDVVI 224 (229)
T ss_dssp SHHHHHHHHHHHHTTSSTHHHHHHHHTTC----TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHhC----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999865543221 1122233334455557888888888887775
No 49
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=78.57 E-value=0.84 Score=46.17 Aligned_cols=58 Identities=26% Similarity=0.427 Sum_probs=46.0
Q ss_pred cCCChhhhhHhhheeEEeeecceeccCCccchhhHHHHHHHhHHHHHHHHHHhhHHHHH
Q psy12868 93 EIWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVLAQ 151 (302)
Q Consensus 93 ~~w~~~~a~~f~~t~~tTiGyG~i~P~T~~gr~~~i~y~~~Gipl~~~~l~~~g~~l~~ 151 (302)
..+++.++++|++.+++..| ++..|++..+|++.+++.++++.+....-+++...+..
T Consensus 560 ~~~~~~~~~~~~~~~l~~~g-~~~~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~ 617 (823)
T 3kg2_A 560 NEFGIFNSLWFSLGAFMQQG-ADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTV 617 (823)
T ss_dssp HHHHHHHHHHHTTTTSCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhcC-CCcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34678899999999999999 78899999999999999999999998888888777653
No 50
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=74.59 E-value=2.2 Score=43.13 Aligned_cols=53 Identities=15% Similarity=0.277 Sum_probs=36.9
Q ss_pred cccceeeeeeeeecccccccccCCCcCCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12868 208 ILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLGMGLIAMCFDLMREDVR 270 (302)
Q Consensus 208 ~~da~Yf~fitltTIGfGDivp~~~~~~~~~~~~~~~~~~~~~il~Gl~l~~~~~~~i~~~~~ 270 (302)
+.+++||++.+++..| ++..|.+. ..+++..+|.++++.+.+..-+.+...+.
T Consensus 564 ~~~~~~~~~~~l~~~g-~~~~p~~~---------~~R~~~~~w~~~~lil~~~Yta~L~s~Lt 616 (823)
T 3kg2_A 564 IFNSLWFSLGAFMQQG-ADISPRSL---------SGRIVGGVWWFFTLIIISSYTANLAAFLT 616 (823)
T ss_dssp HHHHHHHTTTTSCC-------CCCH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcC-CCcCCcch---------hhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5689999999999888 67777654 34688899999999988877776665553
No 51
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=60.63 E-value=3.9 Score=34.74 Aligned_cols=43 Identities=5% Similarity=0.066 Sum_probs=32.0
Q ss_pred ccCCChhhhhHhhheeEEeeecceec----cCCccchhhHHHHHHHh
Q psy12868 92 HEIWSFPAALMFSLSIFTMIGYGNMV----PRTLLGKATTVVYAVFG 134 (302)
Q Consensus 92 ~~~w~~~~a~~f~~t~~tTiGyG~i~----P~T~~gr~~~i~y~~~G 134 (302)
+.-=|+++|++..+.++||-|++|+- ..++.+.++.+.|.++|
T Consensus 161 ~~F~~~~~a~~~lf~~~t~~~w~~i~~~~~~~~~~~~~~f~~~~~i~ 207 (229)
T 4dxw_A 161 SRWGDLGISLITLFQVLTLSSWETVMLPMQEIYWWSWVYFFSFIIIC 207 (229)
T ss_dssp TTTSSHHHHHHHHHHHHTTSSTHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHccCCHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 33456999999999999999999873 23456666666666666
No 52
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=21.56 E-value=1.2e+02 Score=17.08 Aligned_cols=20 Identities=10% Similarity=0.340 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHhHHHhhc
Q psy12868 8 GGLIVGYAVVGAFSFSWIET 27 (302)
Q Consensus 8 ~~llv~Y~~~GA~iF~~lE~ 27 (302)
.+.++.++.+|-|+|..|..
T Consensus 12 lvalltflafgfwlfkylqk 31 (32)
T 2lx0_A 12 LVALLTFLAFGFWLFKYLQK 31 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 34567889999999988753
Done!