RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12868
(302 letters)
>3um7_A Potassium channel subfamily K member 4; potassium ION channel,
metal transport; 3.31A {Homo sapiens}
Length = 309
Score = 160 bits (405), Expect = 2e-47
Identities = 63/281 (22%), Positives = 110/281 (39%), Gaps = 18/281 (6%)
Query: 3 TQVGVGGLIVGYAVVGAFSFSWIETKEERPQIARVEDLTNKTVLKLWEITVYYNIMNKTS 62
T + + L++ Y V GA F +E E+ + ++ K +
Sbjct: 31 TLLALLALVLLYLVSGALVFRALEQPHEQQAQRELGEVREKFLRAHP-----------CV 79
Query: 63 WQNACDETLLIYQKNLTHQV--KDGYDGRTVHEIWSFPAALMFSLSIFTMIGYGNMVPRT 120
+ L + ++ H W +A FS +I T IGYGN+ RT
Sbjct: 80 SDQELGLLIKEVADALGGGADPETQSTSQSSHSAWDLGSAFFFSGTIITTIGYGNVALRT 139
Query: 121 LLGKATTVVYAVFGIPLYVLYFRNMGKVLAQSFRWLYTWLYECTMEDRRSEGEVSPRIIV 180
G+ + YA+ GIPL+ + +G L S R + ++ V +
Sbjct: 140 DAGRLFCIFYALVGIPLFGILLAGVGDRLGSSLRHGIGHIEAIFLKWHVPPELVRVLSAM 199
Query: 181 PSTACLWVLGGYVATGTVMFAEWENWPILDSCYFCVTSLCKIGIGDFVPGANILDSKSGH 240
L +V T T +F E+W L++ YF + +L +G GD+V GA D +
Sbjct: 200 --LFLLIGCLLFVLTPTFVFCYMEDWSKLEAIYFVIVTLTTVGFGDYVAGA---DPRQDS 254
Query: 241 HIKLIINFIYLLLGMGLIAMCFDLMREDVRVKVRNLKTDIG 281
+ + ++LLG+ A + +RV R + ++G
Sbjct: 255 PAYQPLVWFWILLGLAYFASVLTTIGNWLRVVSRRTRAEMG 295
>3ukm_A Potassium channel subfamily K member 1; membrane protein,
eukaryotic, two-pore DO potassium channel, K2P channel,
membrane; HET: UND; 3.40A {Homo sapiens}
Length = 280
Score = 145 bits (367), Expect = 4e-42
Identities = 56/266 (21%), Positives = 105/266 (39%), Gaps = 19/266 (7%)
Query: 10 LIVGYAVVGAFSFSWIETKEERPQIARVEDLTNKTVLKLWEITVYYNIMNKTSWQNACDE 69
+ Y V GA FS +E E + L + + + ++ + ++
Sbjct: 19 GYLLYLVFGAVVFSSVELPYEDLLRQELRKLKRRFLEEHECLS-----------EQQLEQ 67
Query: 70 TLLIYQKNLTHQVKDGYDGRTVHEIWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVV 129
L + + V + + W F +AL F+ ++ + GYG+ VP + GKA ++
Sbjct: 68 FLGRVLEASNYGV-SVLSQASGNWNWDFTSALFFASTVLSTTGYGHTVPLSDGGKAFCII 126
Query: 130 YAVFGIPLYVLYFRNMGKVLAQSFRWLYTWLYECTMEDRRSEGEVSPRIIVPSTACLWVL 189
Y+V GIP +L+ + + + + + I+ +
Sbjct: 127 YSVIGIPFTLLFLTAVVQRITVHVTRRPVLYFHIRWGFSKQV----VAIVHAVLLGFVTV 182
Query: 190 GGYVATGTVMFAEWE-NWPILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINF 248
+ +F+ E +W L+S YFC SL IG+GD+VPG ++ + I
Sbjct: 183 SCFFFIPAAVFSVLEDDWNFLESFYFCFISLSTIGLGDYVPGEG--YNQKFRELYKIGIT 240
Query: 249 IYLLLGMGLIAMCFDLMREDVRVKVR 274
YLLLG+ + + + E +K
Sbjct: 241 CYLLLGLIAMLVVLETFCELHELKKF 266
Score = 36.0 bits (82), Expect = 0.012
Identities = 15/141 (10%), Positives = 36/141 (25%), Gaps = 7/141 (4%)
Query: 34 IARVEDLTNKTVLKLWEITVYYNIMNKTSWQNACDETLLIYQKNLTHQVKDGYDGRTVHE 93
+ V V + + + LL + + +
Sbjct: 139 LTAVVQRITVHVTRRPVLYFHIRWGFSKQVVAIVHAVLLGFVTVSCFFFIPAAVFSVLED 198
Query: 94 IWSFPAALMFSLSIFTMIGYGNMVPRTLLGKAT-------TVVYAVFGIPLYVLYFRNMG 146
W+F + F + IG G+ VP + Y + G+ ++
Sbjct: 199 DWNFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFC 258
Query: 147 KVLAQSFRWLYTWLYECTMED 167
++ ++ + E
Sbjct: 259 ELHELKKFRKMFYVKKDKDEV 279
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel,
open conformation, IO transport; 1.45A
{Methanothermobacter thermautotrophicusorganism_taxid}
PDB: 3lde_A 3r65_A 3ous_A 3ldd_A
Length = 82
Score = 51.2 bits (123), Expect = 6e-09
Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 9/88 (10%)
Query: 180 VPSTACLWVLGGYVATGTVMFAEWENWPILDSCYFCVTSLCKIGIGDFVPGANILDSKSG 239
VP+T L ++ + GT F E S Y+ ++ +G GD+ P + G
Sbjct: 1 VPATRILLLVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSP-----HTPLG 55
Query: 240 HHIKLIINFIYLLLGMGLIAMCFDLMRE 267
++LG+G A+ + + E
Sbjct: 56 M----YFTCTLIVLGIGTFAVAVERLLE 79
Score = 41.6 bits (98), Expect = 2e-05
Identities = 15/57 (26%), Positives = 25/57 (43%)
Query: 93 EIWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVL 149
E S+ +L ++ +GYG+ P T LG T V GI + + + + L
Sbjct: 25 EGESWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFL 81
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer,
central cavity, ION metal transport, membrane protein;
2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A
2ahz_A
Length = 114
Score = 50.7 bits (121), Expect = 2e-08
Identities = 19/87 (21%), Positives = 40/87 (45%), Gaps = 9/87 (10%)
Query: 186 LWVLGGYVATGTVMFAEWENWPILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLI 245
+ + +GT+ ++ E +D+ YF V +L +G G+F P + G I
Sbjct: 28 FVLTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGAGNFSP-----QTDFGK----I 78
Query: 246 INFIYLLLGMGLIAMCFDLMREDVRVK 272
+Y+ +G+GL+ + +V++
Sbjct: 79 FTILYIFIGIGLVFGFIHKLAVNVQLP 105
Score = 44.5 bits (105), Expect = 3e-06
Identities = 18/60 (30%), Positives = 26/60 (43%)
Query: 93 EIWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVLAQS 152
E AL FS+ T +G GN P+T GK T++Y GI L + + +
Sbjct: 46 EGLRPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLP 105
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein;
1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A
3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A
3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Length = 97
Score = 49.4 bits (118), Expect = 4e-08
Identities = 20/87 (22%), Positives = 40/87 (45%), Gaps = 9/87 (10%)
Query: 186 LWVLGGYVATGTVMFAEWENWPILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLI 245
+ + +GT+ ++ E +D+ YF V +L +G GDF P + G I
Sbjct: 11 FVLTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGYGDFSP-----QTDFGK----I 61
Query: 246 INFIYLLLGMGLIAMCFDLMREDVRVK 272
+Y+ +G+GL+ + +V++
Sbjct: 62 FTILYIFIGIGLVFGFIHKLAVNVQLP 88
Score = 44.0 bits (104), Expect = 3e-06
Identities = 18/60 (30%), Positives = 27/60 (45%)
Query: 93 EIWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVLAQS 152
E AL FS+ T +GYG+ P+T GK T++Y GI L + + +
Sbjct: 29 EGLRPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLP 88
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel;
4-helical bundle, ION channel, membrane, transport
protein; 3.20A {Bacillus weihenstephanensis}
Length = 148
Score = 48.8 bits (116), Expect = 2e-07
Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 9/75 (12%)
Query: 186 LWVLGGYVATGTVMFAEWENWPILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLI 245
+ + +GT+ ++ E LD+ YF V +L +G G+F P + G +
Sbjct: 31 FVLTFLTLTSGTIFYSTVEGLRPLDALYFSVVTLTTVGDGNFSP-----QTDFGK----V 81
Query: 246 INFIYLLLGMGLIAM 260
+Y+ +G+GL+
Sbjct: 82 FTILYIFIGIGLVFG 96
Score = 44.6 bits (105), Expect = 5e-06
Identities = 18/54 (33%), Positives = 25/54 (46%)
Query: 93 EIWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMG 146
E AL FS+ T +G GN P+T GK T++Y GI L + +
Sbjct: 49 EGLRPLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLA 102
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix,
cell membrane, ION transport, ionic channel, membrane,
transmembrane; 3.80A {Streptomyces lividans}
Length = 139
Score = 40.6 bits (95), Expect = 1e-04
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 96 SFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVL 140
++P AL +S+ T +GYG++ P TL G+ VV V GI + L
Sbjct: 40 TYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGL 84
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane
helices, ION conduction, immunoglobulin fold, assembly;
3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16
f.14.1.1 PDB: 2wll_B* 2wll_A*
Length = 333
Score = 42.1 bits (98), Expect = 1e-04
Identities = 12/45 (26%), Positives = 19/45 (42%)
Query: 91 VHEIWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGI 135
F A FS+ +GYG+M P+T+ A + G+
Sbjct: 91 NQSPPGFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGM 135
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.5 bits (99), Expect = 1e-04
Identities = 55/389 (14%), Positives = 105/389 (26%), Gaps = 139/389 (35%)
Query: 15 AVVGAFSFSWIE-------TKEERPQIARVEDLTNKTVLKLWEI-----TVYYNIMN--- 59
A V F ++ +KEE I +D + T+ W + + +
Sbjct: 28 AFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVL 87
Query: 60 -------KTSWQNAC-----DETLLIYQKNLTHQVKDGYDGRTV---HEIWSFPAALMFS 104
+ + + I Q++ + + V AL+
Sbjct: 88 RINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL-E 146
Query: 105 LS------IFTMIGYGNMVPRTLLGKATTVVYAV-----FGIPLYVLYFRNMGK------ 147
L I ++G G +T + + Y V F I ++ N+
Sbjct: 147 LRPAKNVLIDGVLGSG----KTWVALDVCLSYKVQCKMDFKI-----FWLNLKNCNSPET 197
Query: 148 VLAQSFRWLYTWLYECTMEDRRSEGEVSPRIIVPSTA----------------CLWVLGG 191
VL + L + S + S I + + CL VL
Sbjct: 198 VLEMLQK-----LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN 252
Query: 192 YVATGTVMFAEWENWPILDSCYFCVTSLCKI-------GIGDFVPGANILDSKSGHHIK- 243
V ++ F ++ CKI + DF+ A HH
Sbjct: 253 -V---------QNAK-AWNA--FNLS--CKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297
Query: 244 --------LIINFIYLLLGMG--------------LIAMCFDLMREDV-------RVKVR 274
L++ + L +++ + +R+ + V
Sbjct: 298 LTPDEVKSLLLKY----LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD 353
Query: 275 NLKTDIGLCFEVIR---LRAIACYRQRSI 300
L T I V+ R + + S+
Sbjct: 354 KLTTIIESSLNVLEPAEYR--KMFDRLSV 380
Score = 36.4 bits (83), Expect = 0.011
Identities = 41/252 (16%), Positives = 70/252 (27%), Gaps = 88/252 (34%)
Query: 43 KTVL---KLWEITVYYNIMNKTSW----QNACDETLLIYQKNLTHQVKDGYDGR------ 89
KT + V + K W ET+L + L +Q+ + R
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222
Query: 90 ---TVHEI----------WSFPAALM-------------FSLSIFTMIGYGNMVPRTLLG 123
+H I + L+ F+LS + LL
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC-----------KILL- 270
Query: 124 KATT----VVYAVFGIPLYVLYFRNMGKVL--AQSFRWLYTWLYECTMEDRRSEG-EVSP 176
TT V + + + L + L +L +C +D E +P
Sbjct: 271 --TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCRPQDLPREVLTTNP 327
Query: 177 RIIVPSTACLWVLGGYVATGTVMFAEWENWP---------ILDSCYFCVTS------LCK 221
R L + A W+NW I++S + +
Sbjct: 328 R----------RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR 377
Query: 222 IGIGDFVPGANI 233
+ + F P A+I
Sbjct: 378 LSV--FPPSAHI 387
Score = 33.7 bits (76), Expect = 0.085
Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 26/121 (21%)
Query: 64 QNACDETLLIYQKNLTHQVKDGYDGRTVHEIWSFPAALMFSLSIFTMIGYGNMVPRT--- 120
Q + L +++ V + +D + V + P +++ I +I + V T
Sbjct: 15 QYQYKDILSVFEDAF---VDN-FDCKDVQD---MPKSILSKEEIDHIIMSKDAVSGTLRL 67
Query: 121 ---LLGKATTVVYAVFGIPLYVLYFRNMGKVLAQSFRWLYT-WLYECTMEDRRSEGEVSP 176
LL K +V F + +VL ++++L + E + +
Sbjct: 68 FWTLLSKQEEMVQK----------F--VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ 115
Query: 177 R 177
R
Sbjct: 116 R 116
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA,
structure, membrane protein, metal transport; HET: PCA;
NMR {Streptomyces lividans} SCOP: f.14.1.1
Length = 155
Score = 40.6 bits (95), Expect = 1e-04
Identities = 20/45 (44%), Positives = 27/45 (60%)
Query: 96 SFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVL 140
S+P AL +S+ T +GYG++ P TL G+ VV V GI Y L
Sbjct: 84 SYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGL 128
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+
IONS, cell membrane, transport PROT; 3.80A {Streptomyces
lividans} PDB: 1f6g_A
Length = 166
Score = 40.7 bits (95), Expect = 1e-04
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 96 SFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVL 140
++P AL +S+ T +GYG++ P TL G+ VV V GI + L
Sbjct: 67 TYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGL 111
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer,
ION transport, ionic channel, membrane, transmembrane,
transport; NMR {Escherichia coli} PDB: 2kb1_A
Length = 103
Score = 39.0 bits (91), Expect = 2e-04
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 96 SFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGI 135
S+P A+ +S+ T +GYG+ P T G+ GI
Sbjct: 40 SYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGI 79
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION
channel, inwardly rectifying channel, metal transport;
2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16
f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A*
2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A*
2x6a_A*
Length = 301
Score = 41.2 bits (96), Expect = 2e-04
Identities = 13/44 (29%), Positives = 19/44 (43%)
Query: 92 HEIWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGI 135
SF A FS+ IGYG ++P L + A+ G+
Sbjct: 78 ARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGM 121
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid
semi-synthetic, membrane protein; HET: 1EM; 1.72A
{Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C*
1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C*
2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C*
3ifx_A* 1j95_A 2jk5_C* ...
Length = 122
Score = 38.9 bits (91), Expect = 3e-04
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 96 SFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVL 140
++P AL ++ T + YG++ P TL G+ VV V GI + L
Sbjct: 61 TYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGL 105
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward
rectifier, potassium channel selectivity filter, metal
transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Length = 321
Score = 40.1 bits (93), Expect = 5e-04
Identities = 11/44 (25%), Positives = 18/44 (40%)
Query: 92 HEIWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGI 135
F A FS+ +GYG+M P+T+ + G+
Sbjct: 74 QFPAGFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGM 117
>1lnq_A MTHK channels, potassium channel related protein; rossman fold,
helix bundle, membrane protein; 3.30A
{Methanothermobacter thermautotrophicusorganism_taxid}
SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Length = 336
Score = 39.4 bits (92), Expect = 8e-04
Identities = 17/75 (22%), Positives = 29/75 (38%)
Query: 93 EIWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVLAQS 152
E S+ +L ++ +GYG+ P T LG TV V GI + + + + L
Sbjct: 42 EGESWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINR 101
Query: 153 FRWLYTWLYECTMED 167
+ L +
Sbjct: 102 EQMKLMGLIDVAKSR 116
Score = 37.0 bits (86), Expect = 0.005
Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 9/86 (10%)
Query: 177 RIIVPSTACLWVLGGYVATGTVMFAEWENWPILDSCYFCVTSLCKIGIGDFVPGANILDS 236
+ VP+T L ++ + GT F E S Y+ ++ +G GD+ P +
Sbjct: 15 VLKVPATRILLLVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSP-----ST 69
Query: 237 KSGHHIKLIINFIYLLLGMGLIAMCF 262
G ++LG+G A+
Sbjct: 70 PLGM----YFTVTLIVLGIGTFAVAV 91
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA;
3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Length = 355
Score = 38.3 bits (89), Expect = 0.002
Identities = 10/40 (25%), Positives = 21/40 (52%)
Query: 96 SFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGI 135
S P A+ +++ + GYG+ +P++ G+ + GI
Sbjct: 161 SIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGI 200
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor,
voltage dependent, ION CH shaker, membrane protein,
eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB:
3lnm_B* 3lut_B* 2a79_B*
Length = 514
Score = 38.1 bits (88), Expect = 0.003
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 96 SFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGI 135
S P A +++ T +GYG+MVP T+ GK + A+ G+
Sbjct: 375 SIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGV 414
Score = 29.6 bits (66), Expect = 1.4
Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 20/86 (23%)
Query: 186 LWVLGGYVATGTVMF------AEWENWP-----ILDSCYFCVTSLCKIGIGDFVPGANIL 234
L +L ++ G ++F AE + I D+ ++ V S+ +G GD VP
Sbjct: 343 LGLLIFFLFIGVILFSSAVYFAEADERDSQFPSIPDAFWWAVVSMTTVGYGDMVP----- 397
Query: 235 DSKSGHHIKLIINFIYLLLGMGLIAM 260
+ G I+ + + G+ IA+
Sbjct: 398 TTIGGK----IVGSLCAIAGVLTIAL 419
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.3 bits (86), Expect = 0.006
Identities = 24/161 (14%), Positives = 47/161 (29%), Gaps = 71/161 (44%)
Query: 123 GKATTVVYAVFG------------IPLYVLY-------FRNMGKVLAQ------SFRWLY 157
G A + A+FG LY Y + + L++ ++
Sbjct: 152 GNAQ--LVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVF 209
Query: 158 T-------WLYECTMEDRRSEGEVSPRIIVPSTACLWVLGGYVATGTVMFAEWENWPI-- 208
T WL E+ + P Y+ + + + P+
Sbjct: 210 TQGLNILEWL-----ENPSN---------TPDKD-------YLLSIPI------SCPLIG 242
Query: 209 -LDSCYFCVTSLCKIGIGDFVPGANILDSKSG--HHIKLII 246
+ ++ VT K + F PG + G H + ++
Sbjct: 243 VIQLAHYVVT--AK--LLGFTPG-ELRSYLKGATGHSQGLV 278
Score = 32.3 bits (73), Expect = 0.21
Identities = 44/268 (16%), Positives = 76/268 (28%), Gaps = 90/268 (33%)
Query: 23 SWIETKEERPQIARVEDLTNKTV-LKLWEITVYYNIMNKTSWQNACDETLLIYQKNLTHQ 81
W+E P + L + + L I V Q A ++ K L
Sbjct: 217 EWLENPSNTPD---KDYLLSIPISCPL--IGVI---------QLAH---YVVTAKLL--- 256
Query: 82 VKDGYDGRTVHEIWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLY 141
G+ P L L T G +V + + + + F
Sbjct: 257 ---GFT----------PGELRSYLKGATGHSQG-LVTAVAIAETDS--WESF-------- 292
Query: 142 FRNMGKVLAQSFRWLYTWL-YECTMEDRRSEGEVSPRIIVPSTACLWVLGGYVATGTVMF 200
F ++ K + L+ ++ C E P +P + +L +
Sbjct: 293 FVSVRKAI----TVLF-FIGVRCY--------EAYPNTSLPPS----ILEDSLENN---- 331
Query: 201 AEWENWPILDSCYFCVTSLCKIGIGDFVPGANILDSKSGH-HIKLII---NFIYLLLG-- 254
E P S +++L + + D+V N I L+ N + + G
Sbjct: 332 ---EGVP---SPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLV--VSGPP 383
Query: 255 MGLIAMCFDLMREDVRVKVRNLKTDIGL 282
L + L R K GL
Sbjct: 384 QSLYGLNLTL---------RKAKAPSGL 402
Score = 31.6 bits (71), Expect = 0.37
Identities = 17/92 (18%), Positives = 26/92 (28%), Gaps = 26/92 (28%)
Query: 64 QNACDETLLIYQKNLTHQVKDGYDG------------RTVHEI------WSFPAALMFSL 105
++ + K++ V D +DG R V I W F
Sbjct: 441 KDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKW--ETTTQFKA 498
Query: 106 S---IF---TMIGYGNMVPRTLLGKATTVVYA 131
+ F G G + R G V+ A
Sbjct: 499 THILDFGPGGASGLGVLTHRNKDGTGVRVIVA 530
Score = 29.2 bits (65), Expect = 2.2
Identities = 41/254 (16%), Positives = 71/254 (27%), Gaps = 74/254 (29%)
Query: 63 WQNACDETLLIYQKNLTHQVKDGYDGRTVHEIWSFPAAL------MFSLSIFTMIGYGNM 116
W A + Y ++ V + T+H F +S IF I G +
Sbjct: 1646 WNRADNHFKDTYGFSILDIVINNPVNLTIH----FGGEKGKRIRENYSAMIFETIVDGKL 1701
Query: 117 VPRTLLGKATTVVYAV-FGIPLYVLYF-RNMGKVLAQSFRWLYTWLYECTMEDRRSEGEV 174
+ + + F +L + Q L ED +S+G
Sbjct: 1702 KTEKIFKEINEHSTSYTFRSEKGLLSATQF-----TQ--PALTLMEKAA-FEDLKSKG-- 1751
Query: 175 SPRIIVPSTACLWV----LGGY---VATGTVMFAEWENWPILDSCYFCVTSLCKI----G 223
++P+ A LG Y + VM E SL ++ G
Sbjct: 1752 ----LIPADAT--FAGHSLGEYAALASLADVMSIE---------------SLVEVVFYRG 1790
Query: 224 --IGDFVPGANILDSKSGHHIKLIINFIYLLLGMGLIAMCFDLMREDVRVKVRNLKTDIG 281
+ VP + S Y ++ + + +E ++ V + G
Sbjct: 1791 MTMQVAVPRDELGRSN------------YGMIAINPGRVAASFSQEALQYVVERVGKRTG 1838
Query: 282 LCFEVIRLRAIACY 295
E I Y
Sbjct: 1839 WLVE------IVNY 1846
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM
protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB:
2a0l_A
Length = 223
Score = 36.1 bits (84), Expect = 0.007
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 96 SFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGI 135
S AL +++ T +GYG++VP T +GK + + GI
Sbjct: 165 SVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGI 204
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid,
receptor, metal transport; HET: P8P; 2.45A {Gallus
gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Length = 343
Score = 34.7 bits (79), Expect = 0.029
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 77 NLTHQVKDGYDGRTVHEIWSFPAALMFSLSIFTMIGYGN--MVPRTLLGKATTVVYAVFG 134
+L + D V ++ F AA +FS+ T IGYG + L VV ++ G
Sbjct: 75 DLENPGGDDTFKPCVLQVNGFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVG 134
Query: 135 I 135
Sbjct: 135 C 135
>3sya_A G protein-activated inward rectifier potassium CH; ION channel,
potassium channel, inward rectification, sodium PIP2
binding, G protein binding; HET: PIO; 2.98A {Mus
musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Length = 340
Score = 33.2 bits (75), Expect = 0.078
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 91 VHEIWSFPAALMFSLSIFTMIGYGNMVP--RTLLGKATTVVYAVFGI 135
V + F +A +FS+ T IGYG V + G ++ +V G
Sbjct: 86 VTNLNGFVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGS 132
>1y96_B Gemin7, SIP3, GEM-associated protein 7; SM fold, protein complex,
RNA binding protein; 2.00A {Homo sapiens}
Length = 85
Score = 28.5 bits (63), Expect = 0.86
Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 16/63 (25%)
Query: 248 FIYLLLGMGLIAMCFDLMREDVRVK--------------VRNLKTDIGLCFE-VIRLRAI 292
++ LL M + F + E VRV V L+T IG+ E ++R I
Sbjct: 20 YLRSLLAMVGHQVSFT-LHEGVRVAAHFGATDLDVANFYVSQLQTPIGVQAEALLRCSDI 78
Query: 293 ACY 295
Y
Sbjct: 79 ISY 81
>2vlc_A Cinnamomin, type 2 ribosome-inactivating protein cinnamomin III;
ribosome inhibiting proteins, toxin, hydrolase, plant
defense; HET: AS5 BMA XYP XYS; 2.95A {Cinnamomum
camphora}
Length = 570
Score = 27.9 bits (61), Expect = 4.4
Identities = 16/130 (12%), Positives = 40/130 (30%), Gaps = 3/130 (2%)
Query: 68 DETLLIYQKNLTHQVKDGYDGRTVHEIWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATT 127
D +L + + + ++ F + + + G++ R + G A
Sbjct: 213 DPAMLSLENKWSAL---SNAVQQSNQGGVFSSPVELRSISNKPVYVGSVSDRVISGLAIM 269
Query: 128 VVYAVFGIPLYVLYFRNMGKVLAQSFRWLYTWLYECTMEDRRSEGEVSPRIIVPSTACLW 187
+ F + ++ + + +D ++ E + RI + C+
Sbjct: 270 LFICRSTDRASSDQFIDHLLMIRPILADVADVATDADNDDTCADPEPTVRISGRNGLCVR 329
Query: 188 VLGGYVATGT 197
V G G
Sbjct: 330 VRDGKYNNGN 339
>4d9i_A Diaminopropionate ammonia-lyase; fold type II PLP-dependent enzyme,
tryptophan synthase beta like PLP-dependent enzymes
superfamily; HET: IT1; 2.00A {Escherichia coli} PDB:
4d9g_A* 4d9n_A* 4d9k_A* 4d9m_A*
Length = 398
Score = 27.1 bits (60), Expect = 8.1
Identities = 9/35 (25%), Positives = 13/35 (37%), Gaps = 5/35 (14%)
Query: 4 QVGVGGLIVGYAVVGAFSFSWIETKEERPQIARVE 38
Q GVG + G V+G + + VE
Sbjct: 230 QAGVGAMAGG--VLGYLVDVY---SPQNLHSIIVE 259
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.327 0.141 0.454
Gapped
Lambda K H
0.267 0.0650 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,840,703
Number of extensions: 281666
Number of successful extensions: 594
Number of sequences better than 10.0: 1
Number of HSP's gapped: 577
Number of HSP's successfully gapped: 44
Length of query: 302
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 209
Effective length of database: 4,105,140
Effective search space: 857974260
Effective search space used: 857974260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 57 (25.9 bits)