RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12868
         (302 letters)



>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK
           {Archaeon Methanothermobacter thermautotrophicus [TaxId:
           145262]}
          Length = 80

 Score = 56.3 bits (136), Expect = 4e-11
 Identities = 18/87 (20%), Positives = 35/87 (40%), Gaps = 9/87 (10%)

Query: 181 PSTACLWVLGGYVATGTVMFAEWENWPILDSCYFCVTSLCKIGIGDFVPGANILDSKSGH 240
           P+T  L ++   +  GT  F   E      S Y+   ++  +G GD+ P           
Sbjct: 1   PATRILLLVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSP---------ST 51

Query: 241 HIKLIINFIYLLLGMGLIAMCFDLMRE 267
            + +      ++LG+G  A+  + + E
Sbjct: 52  PLGMYFTVTLIVLGIGTFAVAVERLLE 78



 Score = 45.5 bits (108), Expect = 2e-07
 Identities = 16/57 (28%), Positives = 26/57 (45%)

Query: 93  EIWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVL 149
           E  S+  +L ++      +GYG+  P T LG   TV   V GI  + +    + + L
Sbjct: 24  EGESWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFL 80


>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel
           kirbac3.1 {Magnetospirillum magnetotacticum [TaxId:
           188]}
          Length = 116

 Score = 36.9 bits (85), Expect = 6e-04
 Identities = 13/60 (21%), Positives = 22/60 (36%)

Query: 92  HEIWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVLAQ 151
               SF  A  FS+     IGYG ++P   L      + A+ G+    +    +     +
Sbjct: 56  ARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFTR 115



 Score = 26.1 bits (57), Expect = 2.5
 Identities = 14/89 (15%), Positives = 27/89 (30%), Gaps = 10/89 (11%)

Query: 178 IIVPSTACLWVLGGYV-ATGTVMFAEWENWPILDSCYFCVTSLCKIGIGDFVPGANILDS 236
           +I         L          +          D+ +F V ++  IG G  +P       
Sbjct: 30  LITGLYLVTNALFALAYLACGDVIENARPGSFTDAFFFSVQTMATIGYGKLIPI------ 83

Query: 237 KSGHHIKLIINFIYLLLGMGLIAMCFDLM 265
                +   +  +  L GM  +A+   L+
Sbjct: 84  ---GPLANTLVTLEALCGMLGLAVAASLI 109


>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces
           coelicolor [TaxId: 1902]}
          Length = 103

 Score = 36.4 bits (84), Expect = 6e-04
 Identities = 18/63 (28%), Positives = 31/63 (49%)

Query: 92  HEIWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVLAQ 151
            ++ ++P AL +S+   T +GYG++ P TL G+   VV  V GI  + L    +      
Sbjct: 36  AQLITYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWFVG 95

Query: 152 SFR 154
             +
Sbjct: 96  REQ 98



 Score = 26.0 bits (57), Expect = 2.3
 Identities = 10/80 (12%), Positives = 24/80 (30%), Gaps = 14/80 (17%)

Query: 186 LWVLGGYVATGTVMFAEWENWP-----ILDSCYFCVTSLCKIGIGDFVPGANILDSKSGH 240
           L V+     +   + AE             + ++ V +   +G GD  P           
Sbjct: 14  LLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYP---------VT 64

Query: 241 HIKLIINFIYLLLGMGLIAM 260
                +  + ++ G+    +
Sbjct: 65  LWGRCVAVVVMVAGITSFGL 84


>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel
           Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]}
          Length = 116

 Score = 33.4 bits (76), Expect = 0.009
 Identities = 14/59 (23%), Positives = 23/59 (38%)

Query: 93  EIWSFPAALMFSLSIFTMIGYGNMVPRTLLGKATTVVYAVFGIPLYVLYFRNMGKVLAQ 151
               F  A  FS+     +GYG+M P+T+   A   +    G+    L    +    A+
Sbjct: 58  SPPGFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFAR 116



 Score = 25.7 bits (56), Expect = 3.7
 Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 9/62 (14%)

Query: 204 ENWPILDSCYFCVTSLCKIGIGDFVPGANILDSKSGHHIKLIINFIYLLLGMGLIAMCFD 263
                + + +F V +L  +G GD  P                I  + + +GM  IA+   
Sbjct: 58  SPPGFVGAFFFSVETLATVGYGDMHPQ---------TVYAHAIATLEIFVGMSGIALSTG 108

Query: 264 LM 265
           L+
Sbjct: 109 LV 110


>d1pgja1 a.100.1.1 (A:179-478) 6-phosphogluconate dehydrogenase
           (6PGD) {Trypanosoma brucei [TaxId: 5691]}
          Length = 300

 Score = 26.2 bits (57), Expect = 5.6
 Identities = 7/30 (23%), Positives = 15/30 (50%), Gaps = 3/30 (10%)

Query: 238 SGHHIKLIINFI-YLLLGMGLIAMCFDLMR 266
           +G  +K+  N   Y +  + +    FD++R
Sbjct: 2   AGSCVKMYHNSGEYAI--LQIWGEVFDILR 29


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.141    0.454 

Gapped
Lambda     K      H
   0.267   0.0429    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,193,589
Number of extensions: 54742
Number of successful extensions: 124
Number of sequences better than 10.0: 1
Number of HSP's gapped: 123
Number of HSP's successfully gapped: 18
Length of query: 302
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 217
Effective length of database: 1,240,546
Effective search space: 269198482
Effective search space used: 269198482
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (25.0 bits)