BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy1287
         (292 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P12693|ALDH_PSEOL Aldehyde dehydrogenase OS=Pseudomonas oleovorans GN=alkH PE=2 SV=1
          Length = 483

 Score = 33.5 bits (75), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 57/134 (42%), Gaps = 21/134 (15%)

Query: 30  IIYIKQYQDFISKLGAPVVIEHLNSMIKDFTIMEYSEDKM----TKPRSLAGNVGIAVFV 85
           ++ I +Y D  S      VI+ +N   K   +  +SEDK        R+ +G+VG+ + V
Sbjct: 363 LLPIIEYDDIDS------VIKRVNDGDKPLALYVFSEDKQFVNNIVARTSSGSVGVNLSV 416

Query: 86  IAFFCVVFAFFSASWLVSDSRITGAKFDRLGLWTHCFRSLPDPNDEYIRRFFVGCRWIFD 145
           + F      F      V++S I  A         + FR+        I +F +   W+F 
Sbjct: 417 VHFLHPNLPFGG----VNNSGIGSAH------GVYGFRAFSHEKPVLIDKFSI-THWLFP 465

Query: 146 PFTKGYDQIRGYLV 159
           P+TK   Q+ G  V
Sbjct: 466 PYTKKVKQLIGITV 479


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.333    0.147    0.478 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 108,288,500
Number of Sequences: 539616
Number of extensions: 4455796
Number of successful extensions: 12216
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 12212
Number of HSP's gapped (non-prelim): 7
length of query: 292
length of database: 191,569,459
effective HSP length: 116
effective length of query: 176
effective length of database: 128,974,003
effective search space: 22699424528
effective search space used: 22699424528
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 61 (28.1 bits)