Query psy1287
Match_columns 292
No_of_seqs 95 out of 106
Neff 3.0
Searched_HMMs 29240
Date Fri Aug 16 21:51:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1287.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1287hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mp7_B Preprotein translocase 32.4 20 0.00067 26.3 1.7 25 189-213 21-45 (61)
2 2kse_A Sensor protein QSEC; me 23.6 42 0.0014 25.3 2.2 37 68-104 3-39 (186)
3 1rh5_B Preprotein translocase 22.3 30 0.001 26.3 1.2 25 189-213 25-49 (74)
4 2wwb_B SEC61gamma, protein tra 18.4 46 0.0016 24.9 1.4 25 189-213 24-48 (68)
5 2ww9_B Protein transport prote 15.4 68 0.0023 24.8 1.8 25 189-213 38-62 (80)
6 1g6u_A Domain swapped dimer; d 15.2 62 0.0021 22.8 1.4 14 12-25 13-26 (48)
7 4rxn_A Rubredoxin; electron tr 9.4 79 0.0027 22.6 0.4 9 138-146 7-15 (54)
8 2cqy_A Propionyl-COA carboxyla 8.3 1.6E+02 0.0056 20.6 1.7 17 38-54 39-55 (108)
9 1vry_A Glycine receptor alpha- 7.1 4.2E+02 0.014 19.9 3.6 26 162-187 31-56 (76)
10 3i5g_C Myosin catalytic light 7.0 1.9E+02 0.0065 22.5 1.7 41 15-55 2-52 (159)
No 1
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=32.44 E-value=20 Score=26.33 Aligned_cols=25 Identities=12% Similarity=0.283 Sum_probs=21.3
Q ss_pred HhcCcchhHHHHHHHHHhHHhhhcC
Q psy1287 189 LCFTPDHKRFVQLTLVIGSTLTCAG 213 (292)
Q Consensus 189 Lc~~~d~~ryv~ll~~~g~~l~~Ag 213 (292)
.|..||.|.|.++.++.|.-.++.|
T Consensus 21 ~~~KPd~~Ef~~iak~~~iG~~i~G 45 (61)
T 3mp7_B 21 VTKKPNWATYKRAAKITGLGIILIG 45 (61)
T ss_dssp HSCCCCTTHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 6888999999999999887766655
No 2
>2kse_A Sensor protein QSEC; methods development, histidine kinase receptor, membrane domain, two-helical hairpin, cell-free synthesis, ATP- binding; NMR {Escherichia coli}
Probab=23.58 E-value=42 Score=25.28 Aligned_cols=37 Identities=22% Similarity=0.217 Sum_probs=22.8
Q ss_pred hhcccccccccchhhHHHHHHHHHHHHhcCcceeeec
Q psy1287 68 KMTKPRSLAGNVGIAVFVIAFFCVVFAFFSASWLVSD 104 (292)
Q Consensus 68 ~M~k~rS~~g~~a~~~t~iAf~~v~IAF~SPyWLvSd 104 (292)
+|+|++|......+.+..+..+.++++...=||....
T Consensus 3 ~m~~~~SLr~RL~l~~~~~~~~~~~~~~~~~~~~~~~ 39 (186)
T 2kse_A 3 KFTQRLSLRVRLTLIFLILASVTWLLSSFVAWKQTTD 39 (186)
T ss_dssp STTTCSSCCCCSHHHHHHHHHHHHHHHHHHHSCCCSC
T ss_pred CCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4665457777776666666666666666666765543
No 3
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=22.33 E-value=30 Score=26.31 Aligned_cols=25 Identities=12% Similarity=0.288 Sum_probs=21.3
Q ss_pred HhcCcchhHHHHHHHHHhHHhhhcC
Q psy1287 189 LCFTPDHKRFVQLTLVIGSTLTCAG 213 (292)
Q Consensus 189 Lc~~~d~~ryv~ll~~~g~~l~~Ag 213 (292)
+|..||.|.|.++.++.|.-.++.|
T Consensus 25 ~~~KPdr~EF~~iak~~~iG~~imG 49 (74)
T 1rh5_B 25 VLKKPTKDEYLAVAKVTALGISLLG 49 (74)
T ss_dssp SEECCCHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 7888999999999999887776655
No 4
>2wwb_B SEC61gamma, protein transport protein SEC61 subunit gamma; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=18.39 E-value=46 Score=24.89 Aligned_cols=25 Identities=24% Similarity=0.553 Sum_probs=20.1
Q ss_pred HhcCcchhHHHHHHHHHhHHhhhcC
Q psy1287 189 LCFTPDHKRFVQLTLVIGSTLTCAG 213 (292)
Q Consensus 189 Lc~~~d~~ryv~ll~~~g~~l~~Ag 213 (292)
+|+.||.|.|.++.++.|.-.++-|
T Consensus 24 ~~~KPdr~Ef~~iak~~~iG~~i~G 48 (68)
T 2wwb_B 24 RCTKPDRKEFQKIAMATAIGFAIMG 48 (68)
T ss_dssp HCCCCCTHHHHHHHHHSSHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 7888999999999998776555433
No 5
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=15.43 E-value=68 Score=24.81 Aligned_cols=25 Identities=24% Similarity=0.574 Sum_probs=20.4
Q ss_pred HhcCcchhHHHHHHHHHhHHhhhcC
Q psy1287 189 LCFTPDHKRFVQLTLVIGSTLTCAG 213 (292)
Q Consensus 189 Lc~~~d~~ryv~ll~~~g~~l~~Ag 213 (292)
+|+.||.|.|.++.++.|.-.++-|
T Consensus 38 ~~~KPdr~Ef~~iak~t~iG~~imG 62 (80)
T 2ww9_B 38 KCKKPDLKEYTKIVKAVGIGFIAVG 62 (80)
T ss_dssp SCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 7888999999999998877665544
No 6
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=15.20 E-value=62 Score=22.76 Aligned_cols=14 Identities=57% Similarity=0.636 Sum_probs=11.3
Q ss_pred ccccccHHHHHHhh
Q psy1287 12 NVEQFSQEELSALI 25 (292)
Q Consensus 12 ~~~~~~~~~~~~~~ 25 (292)
.-|.||.|||.||-
T Consensus 13 kkegfspeelaale 26 (48)
T 1g6u_A 13 KKEGFSPEELAALE 26 (48)
T ss_dssp HHTTCSHHHHHHHH
T ss_pred HHcCCCHHHHHHHH
Confidence 35889999998874
No 7
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=9.44 E-value=79 Score=22.56 Aligned_cols=9 Identities=44% Similarity=1.209 Sum_probs=7.6
Q ss_pred cceeeeecC
Q psy1287 138 VGCRWIFDP 146 (292)
Q Consensus 138 ~GC~WIy~P 146 (292)
..|.|||||
T Consensus 7 ~vCGyvYd~ 15 (54)
T 4rxn_A 7 TVCGYIYDP 15 (54)
T ss_dssp TTTCCEECT
T ss_pred CCCCeEECC
Confidence 379999988
No 8
>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=8.34 E-value=1.6e+02 Score=20.63 Aligned_cols=17 Identities=24% Similarity=0.454 Sum_probs=13.2
Q ss_pred hHhhhcCCcEEeeeccc
Q psy1287 38 DFISKLGAPVVIEHLNS 54 (292)
Q Consensus 38 ~~~~~~~~~~~~~~~~~ 54 (292)
++..++|+|+++|-.+.
T Consensus 39 ~~~~~~~~P~vvKp~~~ 55 (108)
T 2cqy_A 39 RIAREIGYPVMIKASAG 55 (108)
T ss_dssp HHHHHHCSSEEEEETTS
T ss_pred HHHHhcCCCEEEEECCC
Confidence 44567899999998753
No 9
>1vry_A Glycine receptor alpha-1 chain; second transmembrane domain, third transmembrane domain, membrane protein; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=7.06 E-value=4.2e+02 Score=19.94 Aligned_cols=26 Identities=4% Similarity=0.121 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1287 162 FLVFTEFFYTLTFLATIFCAMLVLLF 187 (292)
Q Consensus 162 ffiAtQ~FfTl~~ll~l~s~~l~~l~ 187 (292)
..-|+..++..|+++.+.+++=.++.
T Consensus 31 YikAiDvw~~~C~~FVF~aLlEya~V 56 (76)
T 1vry_A 31 YVKAIDIWLAVCLLFVFSALLEYAAV 56 (76)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688889999999999998877765
No 10
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=7.01 E-value=1.9e+02 Score=22.45 Aligned_cols=41 Identities=12% Similarity=0.210 Sum_probs=29.3
Q ss_pred cccHHHHHHhh----------ccceeeeehhhhhHhhhcCCcEEeeecccc
Q psy1287 15 QFSQEELSALI----------NSAAIIYIKQYQDFISKLGAPVVIEHLNSM 55 (292)
Q Consensus 15 ~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (292)
|.|+||+..+- |+-+.|-.++.+....++|..+.-+.++.|
T Consensus 2 qLt~eqi~elre~F~~fD~~~d~dG~I~~~El~~~lr~lG~~~t~~el~~~ 52 (159)
T 3i5g_C 2 QLTKDEIEEVREVFDLFDFWDGRDGDVDAAKVGDLLRCLGMNPTEAQVHQH 52 (159)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTSSSCEEGGGHHHHHHHTTCCCCHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHCcCCCCCCeECHHHHHHHHHHcCCCCCHHHHHHH
Confidence 67888876541 556788888999999999987654444443
Done!