Query psy1287
Match_columns 292
No_of_seqs 95 out of 106
Neff 3.0
Searched_HMMs 13730
Date Fri Aug 16 21:51:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1287.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/1287hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xjha_ g.81.1.1 (A:) HSP33, C 32.2 7.1 0.00052 26.3 1.1 17 13-29 46-62 (62)
2 d2dsxa1 g.41.5.1 (A:1-52) Rubr 15.3 18 0.0013 24.2 0.3 10 138-147 7-16 (52)
3 d1iroa_ g.41.5.1 (A:) Rubredox 13.0 22 0.0016 23.7 0.3 9 138-146 7-15 (53)
4 d1kjqa3 d.142.1.2 (A:113-318) 12.7 41 0.003 24.5 1.7 22 35-56 28-49 (206)
5 d1dx8a_ g.41.5.1 (A:) Rubredox 12.2 24 0.0018 24.8 0.3 9 138-146 11-19 (70)
6 d1uc8a2 d.142.1.7 (A:89-280) L 12.0 45 0.0032 23.9 1.7 21 33-53 24-44 (192)
7 d1exra_ a.39.1.5 (A:) Calmodul 11.6 58 0.0042 22.5 2.2 35 14-48 1-43 (146)
8 d2hkja1 a.156.1.3 (A:229-306) 11.4 32 0.0023 23.3 0.7 22 13-39 57-78 (78)
9 d3etja3 d.142.1.2 (A:79-276) N 11.1 53 0.0038 23.7 1.9 21 34-54 26-46 (198)
10 d1brfa_ g.41.5.1 (A:) Rubredox 10.8 26 0.0019 23.4 0.1 8 139-146 7-14 (53)
No 1
>d1xjha_ g.81.1.1 (A:) HSP33, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=32.18 E-value=7.1 Score=26.27 Aligned_cols=17 Identities=18% Similarity=0.288 Sum_probs=14.6
Q ss_pred cccccHHHHHHhhccce
Q psy1287 13 VEQFSQEELSALINSAA 29 (292)
Q Consensus 13 ~~~~~~~~~~~~~~~~~ 29 (292)
.-+|+.+||++|+++|+
T Consensus 46 ~Y~f~~~dl~~l~~~a~ 62 (62)
T d1xjha_ 46 HYLFNAMDIAEIRNNAS 62 (62)
T ss_dssp EEEEEHHHHHHHTTTCC
T ss_pred EEEECHHHHHHHHHhcC
Confidence 34789999999999986
No 2
>d2dsxa1 g.41.5.1 (A:1-52) Rubredoxin {Desulfovibrio gigas [TaxId: 879]}
Probab=15.33 E-value=18 Score=24.18 Aligned_cols=10 Identities=30% Similarity=0.790 Sum_probs=8.0
Q ss_pred cceeeeecCC
Q psy1287 138 VGCRWIFDPF 147 (292)
Q Consensus 138 ~GC~WIy~PF 147 (292)
..|.|||||=
T Consensus 7 ~~CgyiYdp~ 16 (52)
T d2dsxa1 7 TVCGYEYDPA 16 (52)
T ss_dssp TTTCCEECTT
T ss_pred CCCCeEECcc
Confidence 3799999883
No 3
>d1iroa_ g.41.5.1 (A:) Rubredoxin {Clostridium pasteurianum [TaxId: 1501]}
Probab=12.97 E-value=22 Score=23.73 Aligned_cols=9 Identities=33% Similarity=1.117 Sum_probs=7.4
Q ss_pred cceeeeecC
Q psy1287 138 VGCRWIFDP 146 (292)
Q Consensus 138 ~GC~WIy~P 146 (292)
..|.|||||
T Consensus 7 ~~CgyiYd~ 15 (53)
T d1iroa_ 7 TVCGYIYNP 15 (53)
T ss_dssp TTTCCEECT
T ss_pred CCCCcEECc
Confidence 369999988
No 4
>d1kjqa3 d.142.1.2 (A:113-318) Glycinamide ribonucleotide transformylase PurT, domain 2 {Escherichia coli [TaxId: 562]}
Probab=12.71 E-value=41 Score=24.52 Aligned_cols=22 Identities=14% Similarity=0.453 Sum_probs=15.9
Q ss_pred hhhhHhhhcCCcEEeeeccccc
Q psy1287 35 QYQDFISKLGAPVVIEHLNSMI 56 (292)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~ 56 (292)
+..++..++|+|+++|=.+++-
T Consensus 28 dl~~~~~~ig~PvVvKP~~g~g 49 (206)
T d1kjqa3 28 LFREAVADIGYPCIVKPVMSSS 49 (206)
T ss_dssp HHHHHHHHHCSSEEEEESCC--
T ss_pred HHHHHHHHhCCCEEEeeccCCc
Confidence 4445788999999999876553
No 5
>d1dx8a_ g.41.5.1 (A:) Rubredoxin {Guillardia theta [TaxId: 55529]}
Probab=12.19 E-value=24 Score=24.84 Aligned_cols=9 Identities=33% Similarity=1.206 Sum_probs=7.6
Q ss_pred cceeeeecC
Q psy1287 138 VGCRWIFDP 146 (292)
Q Consensus 138 ~GC~WIy~P 146 (292)
..|.|||||
T Consensus 11 ~~CgyiYDp 19 (70)
T d1dx8a_ 11 EACGYIYEP 19 (70)
T ss_dssp TTTCCEECT
T ss_pred CCCCeEECc
Confidence 369999998
No 6
>d1uc8a2 d.142.1.7 (A:89-280) Lysine biosynthesis enzyme LysX ATP-binding domain {Thermus thermophilus [TaxId: 274]}
Probab=11.96 E-value=45 Score=23.91 Aligned_cols=21 Identities=19% Similarity=0.373 Sum_probs=17.2
Q ss_pred ehhhhhHhhhcCCcEEeeecc
Q psy1287 33 IKQYQDFISKLGAPVVIEHLN 53 (292)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~ 53 (292)
.++..++..++|.|+++|-..
T Consensus 24 ~~~~~~~~~~~g~P~ivKP~~ 44 (192)
T d1uc8a2 24 REEALRLMEAFGYPVVLKPVI 44 (192)
T ss_dssp HHHHHHHHHHHCSSEEEECSB
T ss_pred HHHHHHHHHHhCCCEEEECCc
Confidence 356678899999999999774
No 7
>d1exra_ a.39.1.5 (A:) Calmodulin {Ciliate (Paramecium tetraurelia) [TaxId: 5888]}
Probab=11.61 E-value=58 Score=22.53 Aligned_cols=35 Identities=20% Similarity=0.367 Sum_probs=28.3
Q ss_pred ccccHHHHHHh--------hccceeeeehhhhhHhhhcCCcEE
Q psy1287 14 EQFSQEELSAL--------INSAAIIYIKQYQDFISKLGAPVV 48 (292)
Q Consensus 14 ~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~ 48 (292)
||.|+||+..| .|+-+.|=..+++.+..+.|.++.
T Consensus 1 ~~lt~~e~~~l~~~F~~~D~~~~G~Is~~e~~~~l~~~~~~~~ 43 (146)
T d1exra_ 1 EQLTEEQIAEFKEAFALFDKDGDGTITTKELGTVMRSLGQNPT 43 (146)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHHTCCCC
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCeECHHHHHHHHHhcCCCCC
Confidence 67888988777 677888888999999988886643
No 8
>d2hkja1 a.156.1.3 (A:229-306) Topoisomerase VI-B subunit middle domain {Archaeon Sulfolobus shibatae [TaxId: 2286]}
Probab=11.37 E-value=32 Score=23.30 Aligned_cols=22 Identities=36% Similarity=0.875 Sum_probs=17.2
Q ss_pred cccccHHHHHHhhccceeeeehhhhhH
Q psy1287 13 VEQFSQEELSALINSAAIIYIKQYQDF 39 (292)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 (292)
+.+.+.+|+.+|.++ ||+|+||
T Consensus 57 ~~~L~~~e~~~L~~a-----ir~~~df 78 (78)
T d2hkja1 57 VKNLTEEEITRLVET-----FKKYEDF 78 (78)
T ss_dssp GGGCCHHHHHHHHHH-----HHHCCCC
T ss_pred cccCCHHHHHHHHHH-----HhhhhcC
Confidence 567888999999886 4777775
No 9
>d3etja3 d.142.1.2 (A:79-276) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), domain 2 {Escherichia coli [TaxId: 562]}
Probab=11.10 E-value=53 Score=23.69 Aligned_cols=21 Identities=10% Similarity=0.395 Sum_probs=16.5
Q ss_pred hhhhhHhhhcCCcEEeeeccc
Q psy1287 34 KQYQDFISKLGAPVVIEHLNS 54 (292)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~ 54 (292)
.+.+++.+++|+|+++|=..+
T Consensus 26 ~d~~~~~~~ig~P~vvKp~~~ 46 (198)
T d3etja3 26 SEWPAVFDRLGELAIVKRRTG 46 (198)
T ss_dssp GGHHHHHHHHCSCEEEEESSS
T ss_pred HHHHHHHHHcCCCeeeeeccc
Confidence 455678899999999987643
No 10
>d1brfa_ g.41.5.1 (A:) Rubredoxin {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=10.81 E-value=26 Score=23.42 Aligned_cols=8 Identities=38% Similarity=0.974 Sum_probs=7.0
Q ss_pred ceeeeecC
Q psy1287 139 GCRWIFDP 146 (292)
Q Consensus 139 GC~WIy~P 146 (292)
.|.|||||
T Consensus 7 ~CgyiYd~ 14 (53)
T d1brfa_ 7 ICGYIYDE 14 (53)
T ss_dssp TTCCEEET
T ss_pred CCCcEECc
Confidence 69999988
Done!