RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1287
(292 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.3 bits (78), Expect = 0.050
Identities = 43/284 (15%), Positives = 75/284 (26%), Gaps = 79/284 (27%)
Query: 14 EQFSQEELSALINSAAIIYIKQYQDFISKLGAPVVIEH----LNSMIKDF--TIMEYSED 67
E + EL ++ ++S L P + LN + +F +E D
Sbjct: 53 EPTTPAELVG-----------KFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLE-GND 100
Query: 68 KMTKPRSLAGNVGIAVFVIAFFCVVFAFFSA-------------SWLVSDSRITGAKFDR 114
L + + ++ + +A S L A+
Sbjct: 101 IHALAAKLLQENDTTL--VKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVA 158
Query: 115 L----GLWTHCFRSLPDPNDEY---IRRFFVGCRWIFDP-----------FTKGYDQIRG 156
+ G F L D Y + FT+G + I
Sbjct: 159 IFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLN-ILE 217
Query: 157 YL-----VPG--FLVFTEFFYTLTFLATIFCAMLVLLFFLCFTPDHKRFVQLTLVIGSTL 209
+L P +L+ L + +V L FTP +L +
Sbjct: 218 WLENPSNTPDKDYLLSIPISCPLIGV-IQLAHYVVTAKLLGFTPG-----ELRSYLKGAT 271
Query: 210 TCAGAKFDRLGLWTHCFRSLPDPNDEYIRR--------FFVGCR 245
+ GL T + D + + FF+G R
Sbjct: 272 GHSQ------GLVTAVAIAETDSWESFFVSVRKAITVLFFIGVR 309
Score = 33.9 bits (77), Expect = 0.076
Identities = 18/79 (22%), Positives = 29/79 (36%), Gaps = 25/79 (31%)
Query: 221 LWTHCFRSLPDPNDEYIR------------RF--FVGCRWIFDPFTKG-YDQIRGYLVPG 265
L + LP+P + + +F +V +P G +DQ+ L
Sbjct: 33 LQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSL--VEPSKVGQFDQV---L--- 84
Query: 266 FLVFTEFFYTLTFLVHNDV 284
L TEF +L ND+
Sbjct: 85 NLCLTEF--ENCYLEGNDI 101
Score = 31.2 bits (70), Expect = 0.48
Identities = 11/59 (18%), Positives = 23/59 (38%), Gaps = 16/59 (27%)
Query: 8 ITNFNVEQFSQ----------EELSALINSAAIIYIKQYQDFISKLGAPVVIEHLNSMI 56
I N+NVE Q + ++ ++N + I I +L + +E + +
Sbjct: 1843 IVNYNVEN-QQYVAAGDLRALDTVTNVLNFIKLQKID-----IIELQKSLSLEEVEGHL 1895
Score = 28.9 bits (64), Expect = 2.8
Identities = 32/172 (18%), Positives = 46/172 (26%), Gaps = 56/172 (32%)
Query: 96 FSASWLVSDSRITGAKFDRLGLWTHCFRSLPDPNDEYIRRFFVGCRWIFDPFTKGYDQIR 155
LV T + F L + LP+P + + D T
Sbjct: 16 LEHVLLVP----TASFFIASQLQEQFNKILPEPTEGFAAD---------DEPT------- 55
Query: 156 GYLVPGFLVFTEFFYTLTFLATIFCAMLVLLFFLCFTPDHKRFVQLTLVIGSTLTCAGAK 215
P LV FL + + LV + + Q V+ LT
Sbjct: 56 ---TPAELV-------GKFLG--YVSSLV---------EPSKVGQFDQVLNLCLTE---- 90
Query: 216 FDRLGLWT---HCF-RSLPDPND-------EYIRRFFVGCRWIFDPFTKGYD 256
F+ L H L ND E I+ + PF K +
Sbjct: 91 FENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSN 142
Score = 28.5 bits (63), Expect = 3.0
Identities = 50/340 (14%), Positives = 93/340 (27%), Gaps = 122/340 (35%)
Query: 16 FSQEELSALINSA----AIIY--------IKQY----QDFISKLGAPVVIEHLNSMIKDF 59
F ++ SAL + A + Y +D + + +V + + +
Sbjct: 137 FDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRD-LYQTYHVLVGDLIKFSAE-- 193
Query: 60 TIMEYSEDKMTKPRSLAGNVGIAVFVIAFFCVVFAFFSASWLVSDSRITGAKFDRLGLWT 119
T+ E + + F WL + S + L
Sbjct: 194 TLSELIRTTLDAEK--------------VFTQGLNIL--EWLENPSNTPDKDY--L---L 232
Query: 120 HCFRSLPDPNDEYI-----RRFFVGCRWI-FDPFTKGYDQIRGYLVPGFLVFT------- 166
S P I + V + + F P + ++G + T
Sbjct: 233 SIPISCP-----LIGVIQLAHYVVTAKLLGFTP-GELRSYLKGATGHSQGLVTAVAIAET 286
Query: 167 ---EFFYTLTFLATIFCAMLVLLFFL---CFTPDHKRF---------VQLTLVIGST--- 208
E F+ A + +LFF+ C ++ + ++ +L
Sbjct: 287 DSWESFFVSVRKA------ITVLFFIGVRC----YEAYPNTSLPPSILEDSLENNEGVPS 336
Query: 209 --LTCAGAKFDRLGLW-THCFRSLPDPNDEYI-----RRFFV--G-----------CRWI 247
L+ + +++ + LP I + V G R
Sbjct: 337 PMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKA 396
Query: 248 FDPFTKGYDQIRGYLVPGF----LVFTEFFYTLT--FLVH 281
P G DQ R +P F L F+ F + F H
Sbjct: 397 KAP--SGLDQSR---IP-FSERKLKFSNRFLPVASPF--H 428
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.4 bits (65), Expect = 1.7
Identities = 13/71 (18%), Positives = 27/71 (38%), Gaps = 13/71 (18%)
Query: 226 FRSLPDPNDEYIRRFFVGC-----RWIFDPFTKGYDQIRGYLVPGFLVFTEFFYTLTFLV 280
F +L +E +++F +++ P Q P ++ + L
Sbjct: 68 FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ------PS-MMTRMYIEQRDRL- 119
Query: 281 HNDVQLFFQTN 291
+ND Q+F + N
Sbjct: 120 YNDNQVFAKYN 130
Score = 29.1 bits (64), Expect = 2.1
Identities = 37/250 (14%), Positives = 69/250 (27%), Gaps = 67/250 (26%)
Query: 16 FSQEELSALINSAAIIYIKQYQDFISKL------GAPVVIEHLNSMIKDFTIM-----EY 64
+ +E+ +L+ + + L P + + I+D
Sbjct: 298 LTPDEVKSLL--LKYLDCR-----PQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV 350
Query: 65 SEDKMTKPRSLAGNVGIAVFVIAFF--CVVF--------AFFSASWL---VSDSRITGAK 111
+ DK+T + NV F VF S W SD + K
Sbjct: 351 NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNK 410
Query: 112 FDRLGL---WTHCFR-SLPD---------PNDEYIRRFFVGCRWIFDPFTKGYDQIRGYL 158
+ L S+P N+ + R V Y+ + +
Sbjct: 411 LHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH----------YNIPKTFD 460
Query: 159 VPGFLVFTEFFYTLTFLA----TIFCAMLVLLF---FLCFTPDHKRFVQLTLV-IGSTLT 210
+ Y + + I + LF FL F RF++ + +
Sbjct: 461 SDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF-----RFLEQKIRHDSTAWN 515
Query: 211 CAGAKFDRLG 220
+G+ + L
Sbjct: 516 ASGSILNTLQ 525
>3f8x_A Putative delta-5-3-ketosteroid isomerase; structural genomics,
joint center for structural genomics; HET: MSE; 1.55A
{Pectobacterium atrosepticum SCRI1043}
Length = 148
Score = 26.5 bits (58), Expect = 6.4
Identities = 13/45 (28%), Positives = 16/45 (35%), Gaps = 1/45 (2%)
Query: 247 IFDPFTKGYDQIRGYLVPGFLVFTEFFYTLTFLVHNDVQLFFQTN 291
FDP+ G + L F V F Y F + L F N
Sbjct: 56 TFDPY-HGKGPLMVILPAVFSVLENFQYARHFSSKSGYVLEFNAN 99
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial;
membrane protein, mitochondrial transport; HET: ACP LMT
CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Length = 595
Score = 27.2 bits (61), Expect = 7.4
Identities = 11/89 (12%), Positives = 32/89 (35%), Gaps = 14/89 (15%)
Query: 34 KQYQDFISKLGAPVVIEHLNSM--IKDFT-----IMEYSED-----KMTKPRSLAGNVGI 81
K QD +++ + E + ++ ++ F I +Y+ ++ + + A
Sbjct: 191 KVTQDSLAQATQ-LAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFF 249
Query: 82 A-VFVIAFFCVVFAFFSASWLVSDSRITG 109
+ V+ + L+ + +T
Sbjct: 250 GATGLSGNLIVLSVLYKGGLLMGSAHMTV 278
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.333 0.147 0.478
Gapped
Lambda K H
0.267 0.0639 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,795,116
Number of extensions: 294833
Number of successful extensions: 839
Number of sequences better than 10.0: 1
Number of HSP's gapped: 837
Number of HSP's successfully gapped: 17
Length of query: 292
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 199
Effective length of database: 4,105,140
Effective search space: 816922860
Effective search space used: 816922860
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 57 (25.9 bits)