RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1287
         (292 letters)



>d2b3tb1 e.38.1.1 (B:7-354) Peptide chain release factor 1, RF1
           {Escherichia coli [TaxId: 562]}
          Length = 344

 Score = 27.8 bits (61), Expect = 1.9
 Identities = 10/35 (28%), Positives = 20/35 (57%), Gaps = 4/35 (11%)

Query: 3   DIRINITNFNVEQFSQEELSALINSAAIIYIKQYQ 37
           D RIN+T + +++  + +L  LI       I+++Q
Sbjct: 309 DHRINLTLYRLDEVMEGKLDMLIEP----IIQEHQ 339


>d1iv8a2 c.1.8.1 (A:1-653) Maltooligosyl trehalose synthase
           {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}
          Length = 653

 Score = 27.6 bits (61), Expect = 2.3
 Identities = 12/73 (16%), Positives = 25/73 (34%), Gaps = 2/73 (2%)

Query: 192 TPDHKRFVQLTLVIGSTLTCAGAKFDRLGLWTHCFRSLPDPNDEY-IRRFFVGCRWIFDP 250
           T D K    + + I           +++  W          NDEY   +  VG  +    
Sbjct: 441 THDTKFSEDVRMKISVLSEFPEEWKNKVEEWHSIINPKVSRNDEYRYYQVLVGS-FYEGF 499

Query: 251 FTKGYDQIRGYLV 263
                ++I+ +++
Sbjct: 500 SNDFKERIKQHMI 512


>d1sdia_ a.198.1.1 (A:) Hypothetical protein YcfC {Escherichia coli
           [TaxId: 562]}
          Length = 213

 Score = 27.0 bits (60), Expect = 2.4
 Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 9/53 (16%)

Query: 5   RINITNFNVEQFSQEELSALINSAAIIYIKQYQDFISKLGAPVVI----EHLN 53
           RIN     +E F  +  + +   AAI     Y D IS LG  + +      L 
Sbjct: 112 RINGLQRQLEHFDLQSETLMSAMAAI-----YVDVISPLGPRIQVTGSPAVLQ 159


>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2)
           {Escherichia coli [TaxId: 562]}
          Length = 362

 Score = 26.9 bits (59), Expect = 3.1
 Identities = 6/33 (18%), Positives = 11/33 (33%), Gaps = 4/33 (12%)

Query: 3   DIRINITNFNVEQFSQEELSALINSAAIIYIKQ 35
           D+R  +   N +      L   I +     +K 
Sbjct: 332 DLRTGVETRNTQAVLDGSLDQFIEA----SLKA 360


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.333    0.147    0.478 

Gapped
Lambda     K      H
   0.267   0.0489    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,202,674
Number of extensions: 59226
Number of successful extensions: 236
Number of sequences better than 10.0: 1
Number of HSP's gapped: 236
Number of HSP's successfully gapped: 11
Length of query: 292
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 207
Effective length of database: 1,240,546
Effective search space: 256793022
Effective search space used: 256793022
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 52 (24.4 bits)