Query psy12870
Match_columns 417
No_of_seqs 187 out of 1340
Neff 5.5
Searched_HMMs 46136
Date Fri Aug 16 21:52:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12870.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12870hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1600|consensus 100.0 3.2E-99 7E-104 738.8 18.2 292 41-383 29-321 (321)
2 PLN02220 delta-9 acyl-lipid de 100.0 5.9E-82 1.3E-86 623.8 13.9 268 46-376 28-295 (299)
3 COG1398 OLE1 Fatty-acid desatu 100.0 3.7E-76 8.1E-81 566.2 10.2 268 51-376 20-288 (289)
4 cd03505 Delta9-FADS-like The D 100.0 1.5E-68 3.2E-73 493.6 8.9 177 77-366 2-178 (178)
5 PF00487 FA_desaturase: Fatty 99.4 3.2E-13 7E-18 125.0 9.4 74 81-154 6-80 (257)
6 cd01060 Membrane-FADS-like The 99.3 1.6E-12 3.5E-17 110.5 6.1 67 84-152 5-73 (122)
7 cd03506 Delta6-FADS-like The D 98.3 1.3E-06 2.9E-11 82.1 6.5 62 87-154 12-74 (204)
8 cd03505 Delta9-FADS-like The D 98.2 5.3E-07 1.2E-11 84.1 1.4 37 155-191 39-77 (178)
9 cd03513 CrtW_beta-carotene-ket 98.2 1.6E-05 3.5E-10 76.7 11.3 41 246-286 172-216 (225)
10 PLN02220 delta-9 acyl-lipid de 98.1 7E-07 1.5E-11 89.4 1.5 49 155-204 92-142 (299)
11 cd03511 Rhizopine-oxygenase-li 98.0 1.6E-05 3.5E-10 78.4 8.0 50 102-151 65-115 (285)
12 COG1398 OLE1 Fatty-acid desatu 97.9 4.8E-06 1E-10 81.9 1.9 54 154-207 81-136 (289)
13 PLN03198 delta6-acyl-lipid des 97.7 0.00024 5.3E-09 76.4 10.4 54 88-147 249-303 (526)
14 cd03514 CrtR_beta-carotene-hyd 97.5 0.00021 4.7E-09 67.8 6.6 50 103-152 46-96 (207)
15 PLN02579 sphingolipid delta-4 97.5 0.0013 2.9E-08 66.8 12.5 78 74-152 67-147 (323)
16 KOG1600|consensus 97.4 0.00019 4.2E-09 72.0 5.8 51 155-206 103-155 (321)
17 cd03510 Rhizobitoxine-FADS-lik 97.2 0.0013 2.8E-08 61.0 8.3 76 76-152 17-93 (175)
18 cd03509 DesA_FADS-like Fatty a 97.2 0.00098 2.1E-08 66.6 7.9 49 103-152 49-100 (288)
19 cd03512 Alkane-hydroxylase Alk 97.2 0.0023 5.1E-08 64.6 10.5 76 78-160 71-148 (314)
20 PLN03199 delta6-acyl-lipid des 97.2 0.0063 1.4E-07 65.0 14.0 43 103-145 183-226 (485)
21 COG3239 DesA Fatty acid desatu 97.1 0.003 6.6E-08 64.6 10.2 50 101-150 84-133 (343)
22 cd03507 Delta12-FADS-like The 97.0 0.0069 1.5E-07 58.1 11.0 53 98-151 51-104 (222)
23 cd03508 Delta4-sphingolipid-FA 96.6 0.037 8E-07 55.5 13.0 59 92-152 57-118 (289)
24 cd01060 Membrane-FADS-like The 96.2 0.0015 3.2E-08 55.3 0.6 58 276-333 55-122 (122)
25 PLN02598 omega-6 fatty acid de 94.3 0.17 3.7E-06 53.4 8.5 47 103-149 147-194 (421)
26 KOG4232|consensus 94.0 0.54 1.2E-05 49.5 11.2 58 89-151 157-215 (430)
27 PLN02505 omega-6 fatty acid de 93.8 0.3 6.5E-06 50.9 9.2 47 103-150 108-156 (381)
28 PLN02498 omega-3 fatty acid de 93.6 0.19 4E-06 53.5 7.2 48 103-150 172-220 (450)
29 PF00487 FA_desaturase: Fatty 90.2 0.17 3.8E-06 46.5 2.0 34 301-334 196-229 (257)
30 cd03513 CrtW_beta-carotene-ket 87.4 0.19 4.2E-06 48.7 0.3 44 295-346 172-221 (225)
31 COG5274 CYB5 Cytochrome b invo 81.2 0.75 1.6E-05 42.7 1.3 40 308-350 2-41 (164)
32 KOG2987|consensus 74.1 36 0.00079 34.2 10.6 73 72-146 61-138 (324)
33 PF10520 Kua-UEV1_localn: Kua- 71.9 13 0.00027 35.1 6.7 47 92-153 95-141 (178)
34 PLN02434 fatty acid hydroxylas 59.3 40 0.00087 33.2 7.7 14 93-106 96-109 (237)
35 cd00547 QFR_TypeD_subunitD Qui 55.5 15 0.00032 32.4 3.5 41 95-144 44-84 (115)
36 PRK05470 fumarate reductase su 55.2 14 0.0003 32.6 3.4 41 95-144 48-88 (118)
37 PF11947 DUF3464: Protein of u 31.6 80 0.0017 29.2 4.6 23 75-97 95-117 (153)
38 PLN02601 beta-carotene hydroxy 22.9 2E+02 0.0044 29.2 5.9 29 97-141 226-259 (303)
39 COG3000 ERG3 Sterol desaturase 22.6 2.2E+02 0.0048 28.1 6.3 31 101-152 111-141 (271)
40 PLN02869 fatty aldehyde decarb 22.5 1.2E+02 0.0027 33.8 4.8 31 134-171 246-276 (620)
41 PLN02601 beta-carotene hydroxy 22.0 1.3E+02 0.0029 30.4 4.5 18 89-106 145-162 (303)
42 cd03506 Delta6-FADS-like The D 21.2 33 0.00071 32.1 0.1 24 311-334 159-182 (204)
43 smart00541 FYRN "FY-rich" doma 20.7 36 0.00078 24.8 0.2 32 319-350 3-34 (44)
No 1
>KOG1600|consensus
Probab=100.00 E-value=3.2e-99 Score=738.77 Aligned_cols=292 Identities=54% Similarity=1.028 Sum_probs=282.5
Q ss_pred cccc-CccceEehhhHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhhcchhhhhhhccccccChHHHHHHHH
Q psy12870 41 ATRE-YKLQIVWRNVILFAYLHLAALYGAYLLVTSAKWPTVIWAILLYQASGLGITAGAHRLWAHRSYKAKWPLRLILVI 119 (417)
Q Consensus 41 ~~~~-~~~~i~W~~v~~~~~lhl~al~g~~~~~~~~~w~t~~~~~~~~~~~~lgit~G~HRl~sHrSfka~~~lr~~L~~ 119 (417)
+... .+++++|.+++.++.+|++|++|++..+++.+|.|+++++++|++++||||+||||+||||||||++|||++||+
T Consensus 29 ~~~~~~~~~~~w~nv~~~~~l~~~a~ygl~~~~~~~~w~t~~~~~~l~~v~glgITag~HRlwsHRSyKa~kpLr~fla~ 108 (321)
T KOG1600|consen 29 EKRVNWKRELVWRNVVLFSALHIVALYGLLAPPFSAKWETLLFAFFLYAVGGLGITAGYHRLWSHRSYKAPKPLRYFLAY 108 (321)
T ss_pred ccccchhcchhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhceeeeehhhhcccccccCCccHHHHHHH
Confidence 3344 789999999999999999999999887788999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccccchhhccccccccCCCCCCCCCCcccchHHHhhhhhhhccChhhhhhcCCCCCCccccCceeeeecchhhh
Q psy12870 120 FNTIAFENHVYEWARDHRVHHKYSETNADPHNAKRGFFFSHMGWLMCKKHPDVIEKGKGIDLADLEQDKLLMFQKKYYMI 199 (417)
Q Consensus 120 ~gtla~qgs~~~Wv~~HR~HH~~sDt~~DPhs~~rGf~~sH~GWl~~~~~p~~~~~~~~~~~~Dl~~Dp~~~~~~r~y~~ 199 (417)
|+++|+||+|++||++||.||||||||+|||||+||||||||||++++++|++.+++++.|++||++||++|||+|+|.+
T Consensus 109 ~~~~A~Qg~~~~WvrdHR~HHk~tdTD~DPhn~~rGF~FsHvgWl~~~k~p~~k~~G~~~dvsDL~~dp~v~Fq~k~y~~ 188 (321)
T KOG1600|consen 109 CNTLAFQGDIIDWVRDHRVHHKFTDTDADPHNPRRGFWFSHVGWLLDKKHPQVKECGGRLDVSDLEADPVVRFQRKTYLL 188 (321)
T ss_pred HHHHhccCChhHHHhhhhhhccccccCCCCCCcccchhhhhhhhHhccCChHHHhhcCcCChhHhhhCceeeehhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHhhcccccccceecccchhhHhhhHHHHHHhhhhceeeeccceeccccccccCCCCCcchhHHHHHHhhcccccc
Q psy12870 200 LMPIFCFVLPTIVPALVWGETWRNSWFVATMFRYTFTLNMTWLVNSAAHMWGQRPYDQYINPSENLGVAVFALGEGWHNY 279 (417)
Q Consensus 200 ~~~~~~~~lP~~i~~~~wg~~~~~~~~~~~~~R~~l~~h~tw~VNS~aH~~G~r~y~~~~~s~nn~~laLlt~GEGwHNn 279 (417)
+++++||++|+++|+++||+++..+|+++ ++|+++++|+||+|||+||+||.||||++++|+||+
T Consensus 189 l~~~~~f~lp~~~p~~~~~~~~~~~~~~~-~~r~~~~lh~TwlVNSaaH~~G~rp~d~~~~s~nn~-------------- 253 (321)
T KOG1600|consen 189 LMLFFCFLLPTLGPMYFWGEGMGLAFYVG-LFRYCIVLHATWLVNSAAHIWGSRPYDTNDTSRNNW-------------- 253 (321)
T ss_pred HHHHHHHHHHHhCcceeeeecchhhhhHH-HHHHHHHHhhHHhhhhHHHHeecccCCCCCCcccce--------------
Confidence 99999999999999999999998999998 999999999999999999999999999988888777
Q ss_pred ccccCCCcccccccccccccCccCCCCCCCCCcccceeeeeecCccccccccCcccccccccCCccccchHHHHHHHhhh
Q psy12870 280 HHVFPGLWPQCSVNSAAHMWGQRPYDQYINPSENLGVAVFALGEGWHNYHHVFPWDYKTAELGNYRANLTTGFIDFFAKL 359 (417)
Q Consensus 280 HHafP~~~~~~~vns~~H~~G~~~~~~~~~s~n~~~~a~~t~GEgwHN~HH~fP~dyr~~~~~~~~~D~t~~~I~~l~~l 359 (417)
+++++|+|||||||||+||+|||+||. ||++|+|+.+|+++++|
T Consensus 254 -----------------------------------~~s~~t~GEgwHNyHH~Fp~dyr~ge~-~y~~d~T~~~I~~~a~l 297 (321)
T KOG1600|consen 254 -----------------------------------WVSILTFGEGWHNYHHAFPWDYRHGEE-WYQLDITWYLIDFFAAL 297 (321)
T ss_pred -----------------------------------EEEEEEeccccccccccCchhhHhhhH-HhhhCcchHHHHHHHHh
Confidence 999999999999999999999999996 99999999999999999
Q ss_pred ccccccccCCHHHHHHHHhhcCCC
Q psy12870 360 GWAYDLKTVSHQMIVNRIKRTGDG 383 (417)
Q Consensus 360 Gla~~lk~~~~~~i~~~~~~~~~~ 383 (417)
|||+|+|+|+.++|++++.+.||+
T Consensus 298 GlA~D~K~~s~~~i~~~~~~~g~~ 321 (321)
T KOG1600|consen 298 GLAYDLKTPSEAQIRRMALRRGDG 321 (321)
T ss_pred hhHhhcCCchHHHHHHHHHhccCC
Confidence 999999999999999999999985
No 2
>PLN02220 delta-9 acyl-lipid desaturase
Probab=100.00 E-value=5.9e-82 Score=623.81 Aligned_cols=268 Identities=26% Similarity=0.465 Sum_probs=229.4
Q ss_pred ccceEehhhHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhhcchhhhhhhccccccChHHHHHHHHHHHHhc
Q psy12870 46 KLQIVWRNVILFAYLHLAALYGAYLLVTSAKWPTVIWAILLYQASGLGITAGAHRLWAHRSYKAKWPLRLILVIFNTIAF 125 (417)
Q Consensus 46 ~~~i~W~~v~~~~~lhl~al~g~~~~~~~~~w~t~~~~~~~~~~~~lgit~G~HRl~sHrSfka~~~lr~~L~~~gtla~ 125 (417)
..+++|..++.++++|++|+++++ .++|.++++++++|+++++|||+||||+||||||||++|+|++|++||++|+
T Consensus 28 ~~~~~~~~~~~~~~~h~~~l~~~~----~~~w~~~~~~~~~~~it~lGiT~GyHRl~sHrsfka~~~l~~~la~~g~~a~ 103 (299)
T PLN02220 28 WTRLDVVRASAVGTVHFLCLLAPF----NYKWEALRFGLILYIVTGLSITFSYHRNLAHRSFKLPKWLEYPFAYSALFAL 103 (299)
T ss_pred cceehhHHHHHHHHHHHHHHHHHH----hccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHHh
Confidence 457899999999999999998753 3679999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhccccccccCCCCCCCCCCcccchHHHhhhhhhhccChhhhhhcCCCCCCccccCceeeeecchhhhhhhHHH
Q psy12870 126 ENHVYEWARDHRVHHKYSETNADPHNAKRGFFFSHMGWLMCKKHPDVIEKGKGIDLADLEQDKLLMFQKKYYMILMPIFC 205 (417)
Q Consensus 126 qgs~~~Wv~~HR~HH~~sDt~~DPhs~~rGf~~sH~GWl~~~~~p~~~~~~~~~~~~Dl~~Dp~~~~~~r~y~~~~~~~~ 205 (417)
||||++||++||+||+|||||+|||||+||||||||||++.++++. .++.+..+++||++||+++||+|+|...++.++
T Consensus 104 Qgs~~~Wv~~HR~HH~~sDt~~DPHsp~~Gfw~sH~gWl~~~~~~~-~~~~~~~~~~Dl~~d~~~~~~~~~~~~~~l~~~ 182 (299)
T PLN02220 104 QGDPIDWVSTHRFHHQFTDSDRDPHSPIEGFWFSHVLWIFDTSYIR-EKCGGRDNVMDLKQQWFYRFLRKTIGLHILMFW 182 (299)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCccccccCcHHHHhHhhcCcchhh-hhcccccchHHHHhCcchHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999876542 334456789999999999999998765433322
Q ss_pred hhcccccccceecccchhhHhhhHHHHHHhhhhceeeeccceeccccccccCCCCCcchhHHHHHHhhccccccccccCC
Q psy12870 206 FVLPTIVPALVWGETWRNSWFVATMFRYTFTLNMTWLVNSAAHMWGQRPYDQYINPSENLGVAVFALGEGWHNYHHVFPG 285 (417)
Q Consensus 206 ~~lP~~i~~~~wg~~~~~~~~~~~~~R~~l~~h~tw~VNS~aH~~G~r~y~~~~~s~nn~~laLlt~GEGwHNnHHafP~ 285 (417)
+ ..+++|+ ...+++++++|+++++|+||+|||+||+||+|||+++|+|+||+++|++|+|
T Consensus 183 ~------~~~~~gg--~~~~~wg~~~r~~~~~h~tw~VNS~~H~~G~rpy~~~d~srN~~~lallt~G------------ 242 (299)
T PLN02220 183 T------LLYLWGG--LPYLTWGVGVGGAIGYHVTWLINSACHIWGSRTWKTKDTSRNVWWLSLFTMG------------ 242 (299)
T ss_pred H------HHHHHhH--HHHHHHHHHHHHHHHHhhhhccchhhhcccCCCCCCCCCcchhHHHHHHhcc------------
Confidence 2 2234554 2345667889999999999999999999999999999999999866666655
Q ss_pred CcccccccccccccCccCCCCCCCCCcccceeeeeecCccccccccCcccccccccCCccccchHHHHHHHhhhcccccc
Q psy12870 286 LWPQCSVNSAAHMWGQRPYDQYINPSENLGVAVFALGEGWHNYHHVFPWDYKTAELGNYRANLTTGFIDFFAKLGWAYDL 365 (417)
Q Consensus 286 ~~~~~~vns~~H~~G~~~~~~~~~s~n~~~~a~~t~GEgwHN~HH~fP~dyr~~~~~~~~~D~t~~~I~~l~~lGla~~l 365 (417)
||||||||+||+|||+|. +|||+||||++|++|++||||+||
T Consensus 243 -------------------------------------EgwHNnHHafP~sar~G~-~w~~~D~t~~~I~~l~~lGLa~dl 284 (299)
T PLN02220 243 -------------------------------------ESWHNNHHAFESSARQGL-EWWQIDITWYLIRFFEVLGLATDV 284 (299)
T ss_pred -------------------------------------ccccccccCCccchhhCC-cCCCcCchHHHHHHHHHhCCcccc
Confidence 555666666677888884 789999999999999999999999
Q ss_pred ccCCHHHHHHH
Q psy12870 366 KTVSHQMIVNR 376 (417)
Q Consensus 366 k~~~~~~i~~~ 376 (417)
|+|+++.++++
T Consensus 285 k~p~~~~~~~~ 295 (299)
T PLN02220 285 KLPTEAQKRKM 295 (299)
T ss_pred cCCcHHHHHhH
Confidence 99987766543
No 3
>COG1398 OLE1 Fatty-acid desaturase [Lipid metabolism]
Probab=100.00 E-value=3.7e-76 Score=566.24 Aligned_cols=268 Identities=29% Similarity=0.517 Sum_probs=234.2
Q ss_pred ehhhHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhhcchhhhhhhccccccChHHHHHHHHHHHHhcccccc
Q psy12870 51 WRNVILFAYLHLAALYGAYLLVTSAKWPTVIWAILLYQASGLGITAGAHRLWAHRSYKAKWPLRLILVIFNTIAFENHVY 130 (417)
Q Consensus 51 W~~v~~~~~lhl~al~g~~~~~~~~~w~t~~~~~~~~~~~~lgit~G~HRl~sHrSfka~~~lr~~L~~~gtla~qgs~~ 130 (417)
|.++.+|++.+++++.+++.- +..-++.+++++++|.++++|||+|+||+|||||||+++++|++|+++|++++||+++
T Consensus 20 ~~~v~~f~~~~i~~~l~~~~~-~~~~~~~~i~~l~~y~~~~igIt~G~HRl~sHRa~~~~k~Le~~la~~g~l~~~G~~~ 98 (289)
T COG1398 20 WNNVLFFIGPLIVAYLAFYPD-FFSWLAELIFTLAYYLIGGIGITLGLHRLWSHRAFKAHKWLEYVLAFWGALTTQGPAI 98 (289)
T ss_pred HHHHHHHHHHHHHHHHhhccc-chHHHHHHHHHHHHHHhccceeeeehhhhhhhhhcccchHHHHHHHHHHHhhcCCCce
Confidence 999999999999888664321 1234567788888899999999999999999999999999999999999999999999
Q ss_pred hhhccccccccCCCCCCCC-CCcccchHHHhhhhhhhccChhhhhhcCCCCCCccccCceeeeecchhhhhhhHHHhhcc
Q psy12870 131 EWARDHRVHHKYSETNADP-HNAKRGFFFSHMGWLMCKKHPDVIEKGKGIDLADLEQDKLLMFQKKYYMILMPIFCFVLP 209 (417)
Q Consensus 131 ~Wv~~HR~HH~~sDt~~DP-hs~~rGf~~sH~GWl~~~~~p~~~~~~~~~~~~Dl~~Dp~~~~~~r~y~~~~~~~~~~lP 209 (417)
+|+++||+||+|||||.|| |+.+|||||||+||++..+. + .....+..|+-+|+.++||+|++...++++.+++|
T Consensus 99 ~W~~~HR~HHr~tDTd~DPh~~~~kGfw~shigWm~~~~~-~---~~~r~~~~~~~kd~~~~~~~r~~~~~~~l~~i~~~ 174 (289)
T COG1398 99 EWVGIHRKHHRKTDTDQDPHYDSFKGFWWSHIGWMLLYSA-E---AKDRETIQKLGKDIPLDWQHRNLYLIALLMQIVLP 174 (289)
T ss_pred eHHHHHHHhhcccCCCCCCCccccccchhhhcceeeecch-h---hcChhHHHHhCCCchhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999 55689999999999987554 2 22233567899999999999999999999999999
Q ss_pred cccccceecccchhhHhhhHHHHHHhhhhceeeeccceeccccccccCCCCCcchhHHHHHHhhccccccccccCCCccc
Q psy12870 210 TIVPALVWGETWRNSWFVATMFRYTFTLNMTWLVNSAAHMWGQRPYDQYINPSENLGVAVFALGEGWHNYHHVFPGLWPQ 289 (417)
Q Consensus 210 ~~i~~~~wg~~~~~~~~~~~~~R~~l~~h~tw~VNS~aH~~G~r~y~~~~~s~nn~~laLlt~GEGwHNnHHafP~~~~~ 289 (417)
.++. +++|+ +-+++++++.|+++++|+||+|||+||.+|+||||.+|+|||++
T Consensus 175 l~~~-~~~gg--~~gl~~~gv~r~~~~~hat~~VNsl~H~~Gyr~fd~~d~arN~w------------------------ 227 (289)
T COG1398 175 LFIG-YALGG--WLGLIWGGVQRLVLVQHATWCVNSLGHYIGYRPFDCRDTARNCW------------------------ 227 (289)
T ss_pred HHHH-HHhcc--hhHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccCCCCCcccee------------------------
Confidence 5554 45665 23488899999999999999999999999999998877666665
Q ss_pred ccccccccccCccCCCCCCCCCcccceeeeeecCccccccccCcccccccccCCccccchHHHHHHHhhhccccccccCC
Q psy12870 290 CSVNSAAHMWGQRPYDQYINPSENLGVAVFALGEGWHNYHHVFPWDYKTAELGNYRANLTTGFIDFFAKLGWAYDLKTVS 369 (417)
Q Consensus 290 ~~vns~~H~~G~~~~~~~~~s~n~~~~a~~t~GEgwHN~HH~fP~dyr~~~~~~~~~D~t~~~I~~l~~lGla~~lk~~~ 369 (417)
++|++|+|||||||||+||.|||++ +.|||+|+|||+|++++.||||+++|++|
T Consensus 228 -------------------------w~al~t~GEgwHNnHHafp~~ar~g-~kWwe~D~tw~~I~l~s~lGLA~~~k~~p 281 (289)
T COG1398 228 -------------------------WVALVTFGEGWHNNHHAFPNSARNG-LKWWEFDVTWWIIKLLSLLGLAKVVKLAP 281 (289)
T ss_pred -------------------------EEEEeecccccccccccCcchhhcC-ceeEEeccHHHHHHHHHHHhHHHhcccCc
Confidence 9999999999999999999999999 59999999999999999999999999999
Q ss_pred HHHHHHH
Q psy12870 370 HQMIVNR 376 (417)
Q Consensus 370 ~~~i~~~ 376 (417)
...|+++
T Consensus 282 ~~~~~~~ 288 (289)
T COG1398 282 KARIGEG 288 (289)
T ss_pred HHHHhcc
Confidence 8887653
No 4
>cd03505 Delta9-FADS-like The Delta9 Fatty Acid Desaturase (Delta9-FADS)-like CD includes the delta-9 and delta-11 acyl CoA desaturases found in various eukaryotes including vertebrates, insects, higher plants, and fungi. The delta-9 acyl-lipid desaturases are found in a wide range of bacteria. These enzymes play essential roles in fatty acid metabolism and the regulation of cell membrane fluidity. Acyl-CoA desaturases are the enzymes involved in the CoA-bound desaturation of fatty acids. Mammalian stearoyl-CoA delta-9 desaturase is a key enzyme in the biosynthesis of monounsaturated fatty acids, and in yeast, the delta-9 acyl-CoA desaturase (OLE1) reaction accounts for all de nova unsaturated fatty acid production in Saccharomyces cerevisiae. These non-heme, iron-containing, ER membrane-bound enzymes are part of a three-component enzyme system involving cytochrome b5, cytochrome b5 reductase, and the delta-9 fatty acid desaturase. This complex catalyzes the NADH- and oxygen-dependent i
Probab=100.00 E-value=1.5e-68 Score=493.64 Aligned_cols=177 Identities=51% Similarity=0.975 Sum_probs=164.7
Q ss_pred hhHHHHHHHHHHHHhhhhcchhhhhhhccccccChHHHHHHHHHHHHhcccccchhhccccccccCCCCCCCCCCcccch
Q psy12870 77 WPTVIWAILLYQASGLGITAGAHRLWAHRSYKAKWPLRLILVIFNTIAFENHVYEWARDHRVHHKYSETNADPHNAKRGF 156 (417)
Q Consensus 77 w~t~~~~~~~~~~~~lgit~G~HRl~sHrSfka~~~lr~~L~~~gtla~qgs~~~Wv~~HR~HH~~sDt~~DPhs~~rGf 156 (417)
|.++++++++|+++++|||+||||+|||||||+++++|++|+++|++|+||||++|+++||+||+|+|||+|||||.|||
T Consensus 2 ~~~~~~~~~~~~~~~lgit~G~HRl~aHrsfk~~~~l~~~l~~~g~~a~qgs~~~W~~~HR~HH~~sDt~~DPhs~~~gf 81 (178)
T cd03505 2 WATLVFLVLYYLLTGLGITAGYHRLWAHRSFKAPKPLRIFLAILGSLAGQGSPLWWVADHRLHHRYSDTDGDPHSPKRGF 81 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcCcHHHHHHHHHHHHHHcCcCHHHHHHHHHHhhcccCCCCCCCCcccCc
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhhccChhhhhhcCCCCCCccccCceeeeecchhhhhhhHHHhhcccccccceecccchhhHhhhHHHHHHhh
Q psy12870 157 FFSHMGWLMCKKHPDVIEKGKGIDLADLEQDKLLMFQKKYYMILMPIFCFVLPTIVPALVWGETWRNSWFVATMFRYTFT 236 (417)
Q Consensus 157 ~~sH~GWl~~~~~p~~~~~~~~~~~~Dl~~Dp~~~~~~r~y~~~~~~~~~~lP~~i~~~~wg~~~~~~~~~~~~~R~~l~ 236 (417)
|+||+||+ ++++|++++
T Consensus 82 ~~~h~gW~---------------------------------------------------------------~~~~r~~~~ 98 (178)
T cd03505 82 WFSHVGWL---------------------------------------------------------------GGLLRIVLV 98 (178)
T ss_pred HHHHHhhH---------------------------------------------------------------HHHHHHHHH
Confidence 99999999 357899999
Q ss_pred hhceeeeccceeccccccccCCCCCcchhHHHHHHhhccccccccccCCCcccccccccccccCccCCCCCCCCCcccce
Q psy12870 237 LNMTWLVNSAAHMWGQRPYDQYINPSENLGVAVFALGEGWHNYHHVFPGLWPQCSVNSAAHMWGQRPYDQYINPSENLGV 316 (417)
Q Consensus 237 ~h~tw~VNS~aH~~G~r~y~~~~~s~nn~~laLlt~GEGwHNnHHafP~~~~~~~vns~~H~~G~~~~~~~~~s~n~~~~ 316 (417)
+|+||+|||+||++|+|||+++|+|+|++++||+|+
T Consensus 99 ~h~t~~VNs~~H~~G~r~~~~~~~s~n~~~~~llt~-------------------------------------------- 134 (178)
T cd03505 99 LHATWLVNSLAHMWGYRPYDTRDTSRNNWWVALLTF-------------------------------------------- 134 (178)
T ss_pred HHHHHHHHHHHHhcCCCCCCCCCCchhhHHHHHHHc--------------------------------------------
Confidence 999999999999999999999999998886666555
Q ss_pred eeeeecCccccccccCcccccccccCCccccchHHHHHHHhhhccccccc
Q psy12870 317 AVFALGEGWHNYHHVFPWDYKTAELGNYRANLTTGFIDFFAKLGWAYDLK 366 (417)
Q Consensus 317 a~~t~GEgwHN~HH~fP~dyr~~~~~~~~~D~t~~~I~~l~~lGla~~lk 366 (417)
|||||||||+||+|||+| ++|||+||||++|++|++||||+|||
T Consensus 135 -----GEg~HNnHHafP~~ar~g-~~~~~~D~t~~~I~~l~~lGla~~lk 178 (178)
T cd03505 135 -----GEGWHNNHHAFPGDARNG-LKWYQIDPTKWVIRLLEKLGLAWDLK 178 (178)
T ss_pred -----cccccccccCCcchhhhC-CcCCCcCchHHHHHHHHHcCCcccCC
Confidence 556666677777899999 58999999999999999999999997
No 5
>PF00487 FA_desaturase: Fatty acid desaturase This entry is only a subset of the Pfam family.; InterPro: IPR005804 Fatty acid desaturases are enzymes that catalyse the insertion of a double bond at the delta position of fatty acids. There seem to be two distinct families of fatty acid desaturases which do not seem to be evolutionary related. Family 1 is composed of: Stearoyl-CoA desaturase (SCD) (1.14.19.1 from EC) []. Family 2 is composed of: Bacterial fatty acid desaturases. Plant stearoyl-acyl-carrier-protein desaturase (1.14.19.1 from EC) [], this enzyme catalyzes the introduction of a double bond at the delta(9) position of steraoyl-ACP to produce oleoyl-ACP. This enzyme is responsible for the conversion of saturated fatty acids to unsaturated fatty acids in the synthesis of vegetable oils. Cyanobacterial DesA [], an enzyme that can introduce a second cis double bond at the delta(12) position of fatty acid bound to membranes glycerolipids. DesA is involved in chilling tolerance; the phase transition temperature of lipids of cellular membranes being dependent on the degree of unsaturation of fatty acids of the membrane lipids. This entry contains fatty acid desaturases belonging to Family 1. ; GO: 0006629 lipid metabolic process
Probab=99.44 E-value=3.2e-13 Score=124.97 Aligned_cols=74 Identities=19% Similarity=0.218 Sum_probs=62.4
Q ss_pred HHHHHHHHHHhhhhcchhhhhhhccccccChHHHHHHHHHHHHhcccccchhhccccccccCCCCCC-CCCCccc
Q psy12870 81 IWAILLYQASGLGITAGAHRLWAHRSYKAKWPLRLILVIFNTIAFENHVYEWARDHRVHHKYSETNA-DPHNAKR 154 (417)
Q Consensus 81 ~~~~~~~~~~~lgit~G~HRl~sHrSfka~~~lr~~L~~~gtla~qgs~~~Wv~~HR~HH~~sDt~~-DPhs~~r 154 (417)
.+++++.....++.+.+.++-.+|++|..++++..++..+.++..+++...|...|+.||+++++++ ||.+...
T Consensus 6 ~~~~~~~~~~~~~~~~~~~H~~~H~~~~~~~~~n~~l~~~~~~~~~~~~~~wr~~H~~HH~~~~~~~~Dpd~~~~ 80 (257)
T PF00487_consen 6 WLLALLLLGLSFARLFGLAHDAGHGAFFRSRWLNDLLGRLLGLPIGGPYSSWRISHNRHHHYTNNPDRDPDSWTR 80 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCcccChHHHHHHHHHHHHhcCCHhHhheeeeccccccCCccccCccchh
Confidence 3344445556677888899999999999999999998888887788899999999999999999888 9998854
No 6
>cd01060 Membrane-FADS-like The membrane fatty acid desaturase (Membrane_FADS)-like CD includes membrane FADSs, alkane hydroxylases, beta carotene ketolases (CrtW-like), hydroxylases (CrtR-like), and other related proteins. They are present in all groups of organisms with the exception of archaea. Membrane FADSs are non-heme, iron-containing, oxygen-dependent enzymes involved in regioselective introduction of double bonds in fatty acyl aliphatic chains. They play an important role in the maintenance of the proper structure and functioning of biological membranes. Alkane hydroxylases are bacterial, integral-membrane di-iron enzymes that share a requirement for iron and oxygen for activity similar to that of membrane FADSs, and are involved in the initial oxidation of inactivated alkanes. Beta-carotene ketolase and beta-carotene hydroxylase are carotenoid biosynthetic enzymes for astaxanthin and zeaxanthin, respectively. This superfamily domain has extensive hydrophobic regions that would
Probab=99.33 E-value=1.6e-12 Score=110.48 Aligned_cols=67 Identities=40% Similarity=0.680 Sum_probs=54.6
Q ss_pred HHHHHHHhhhhcchhhhhhhcccccc-ChHHHHHHHHHHHHhcccccchhhccccccccCCCCC-CCCCCc
Q psy12870 84 ILLYQASGLGITAGAHRLWAHRSYKA-KWPLRLILVIFNTIAFENHVYEWARDHRVHHKYSETN-ADPHNA 152 (417)
Q Consensus 84 ~~~~~~~~lgit~G~HRl~sHrSfka-~~~lr~~L~~~gtla~qgs~~~Wv~~HR~HH~~sDt~-~DPhs~ 152 (417)
+++.++.+++.....|+. +|++|.. +++-+++..+++. ....++..|...|..||++++++ +||..+
T Consensus 5 ~~~~~~~~~~~~~~~H~~-~H~~~~~~~~~n~~~~~~~~~-~~~~~~~~~~~~H~~HH~~~~~~~~D~~~~ 73 (122)
T cd01060 5 LLLGLLGGLGLTVLAHEL-GHRSFFRSRWLNRLLGALLGL-ALGGSYGWWRRSHRRHHRYTNTPGKDPDSA 73 (122)
T ss_pred HHHHHHHHHHHHHHHHHH-hhhhhhccccHHHHHHHHHHH-HHcCCHHHHHHHHHHHhcCcCCCCCCCccc
Confidence 334444455888999999 9999994 5566666666666 77789999999999999999988 999998
No 7
>cd03506 Delta6-FADS-like The Delta6 Fatty Acid Desaturase (Delta6-FADS)-like CD includes the integral-membrane enzymes: delta-4, delta-5, delta-6, delta-8, delta-8-sphingolipid, and delta-11 desaturases found in vertebrates, higher plants, fungi, and bacteria. These desaturases are required for the synthesis of highly unsaturated fatty acids (HUFAs), which are mainly esterified into phospholipids and contribute to maintaining membrane fluidity. While HUFAs may be required for cold tolerance in bacteria, plants and fish, the primary role of HUFAs in mammals is cell signaling. These enzymes are described as front-end desaturases because they introduce a double bond between the pre-exiting double bond and the carboxyl (front) end of the fatty acid. Various substrates are involved, with both acyl-coenzyme A (CoA) and acyl-lipid desaturases present in this CD. Acyl-lipid desaturases are localized in the membranes of cyanobacterial thylakoid, plant endoplasmic reticulum (ER), and plastid; an
Probab=98.28 E-value=1.3e-06 Score=82.07 Aligned_cols=62 Identities=24% Similarity=0.246 Sum_probs=49.0
Q ss_pred HHHHhhhhcchhhhhhhccccccChHHHHHHHHHHHHhcccccchhhccccccccCCC-CCCCCCCccc
Q psy12870 87 YQASGLGITAGAHRLWAHRSYKAKWPLRLILVIFNTIAFENHVYEWARDHRVHHKYSE-TNADPHNAKR 154 (417)
Q Consensus 87 ~~~~~lgit~G~HRl~sHrSfka~~~lr~~L~~~gtla~qgs~~~Wv~~HR~HH~~sD-t~~DPhs~~r 154 (417)
.....++..++ |+++..++++..++..+.......|...|...|..||++++ .+.||-....
T Consensus 12 ~~~~~~~Hd~~------H~~~~~~~~~n~~~g~~~~~~~g~s~~~w~~~H~~HH~~tn~~~~Dpd~~~~ 74 (204)
T cd03506 12 AQGGFLAHDAG------HGQVFKNRWLNKLLGLTVGNLLGASAGWWKNKHNVHHAYTNILGHDPDIDTL 74 (204)
T ss_pred HHHHHHHHhcc------CccccCCchHHHHHHHHHHhccCCCHHHHHHHHhhhcCcCCCCCCCCCCCcC
Confidence 33444666655 99998888888888777777777899999999999999998 4589977643
No 8
>cd03505 Delta9-FADS-like The Delta9 Fatty Acid Desaturase (Delta9-FADS)-like CD includes the delta-9 and delta-11 acyl CoA desaturases found in various eukaryotes including vertebrates, insects, higher plants, and fungi. The delta-9 acyl-lipid desaturases are found in a wide range of bacteria. These enzymes play essential roles in fatty acid metabolism and the regulation of cell membrane fluidity. Acyl-CoA desaturases are the enzymes involved in the CoA-bound desaturation of fatty acids. Mammalian stearoyl-CoA delta-9 desaturase is a key enzyme in the biosynthesis of monounsaturated fatty acids, and in yeast, the delta-9 acyl-CoA desaturase (OLE1) reaction accounts for all de nova unsaturated fatty acid production in Saccharomyces cerevisiae. These non-heme, iron-containing, ER membrane-bound enzymes are part of a three-component enzyme system involving cytochrome b5, cytochrome b5 reductase, and the delta-9 fatty acid desaturase. This complex catalyzes the NADH- and oxygen-dependent i
Probab=98.18 E-value=5.3e-07 Score=84.10 Aligned_cols=37 Identities=19% Similarity=0.199 Sum_probs=29.0
Q ss_pred chHHHhhhhhhhccChh--hhhhcCCCCCCccccCceee
Q psy12870 155 GFFFSHMGWLMCKKHPD--VIEKGKGIDLADLEQDKLLM 191 (417)
Q Consensus 155 Gf~~sH~GWl~~~~~p~--~~~~~~~~~~~Dl~~Dp~~~ 191 (417)
-++++.+|++..+..|. +..++.++..+|-++||+..
T Consensus 39 ~~~l~~~g~~a~qgs~~~W~~~HR~HH~~sDt~~DPhs~ 77 (178)
T cd03505 39 RIFLAILGSLAGQGSPLWWVADHRLHHRYSDTDGDPHSP 77 (178)
T ss_pred HHHHHHHHHHHcCcCHHHHHHHHHHhhcccCCCCCCCCc
Confidence 46667899988888876 44577788889998999865
No 9
>cd03513 CrtW_beta-carotene-ketolase Beta-carotene ketolase/oxygenase (CrtW, also known as CrtO), the carotenoid astaxanthin biosynthetic enzyme, initially catalyzes the addition of two keto groups to carbons C4 and C4' of beta-carotene. Carotenoids are important natural pigments produced by many microorganisms and plants. Astaxanthin is reported to be an antioxidant, an anti-cancer agent, and an immune system stimulant. A number of bacteria and green algae can convert beta-carotene into astaxanthin by using several ketocarotenoids as intermediates and CrtW and a beta-carotene hydroxylase (CrtZ). CrtW initially converts beta-carotene to canthaxanthin via echinenone, and CrtZ initially mediates the conversion of beta-carotene to zeaxanthin via beta-cryptoxanthin. After a few more intermediates are formed, CrtW and CrtZ act in combination to produce astaxanthin. Sequences of this domain family appear to be structurally related to membrane fatty acid desaturases and alkane hydroxylases. Th
Probab=98.17 E-value=1.6e-05 Score=76.74 Aligned_cols=41 Identities=17% Similarity=0.284 Sum_probs=33.0
Q ss_pred ceeccccccccCCCCCcc---hhHHHHHH-hhccccccccccCCC
Q psy12870 246 AAHMWGQRPYDQYINPSE---NLGVAVFA-LGEGWHNYHHVFPGL 286 (417)
Q Consensus 246 ~aH~~G~r~y~~~~~s~n---n~~laLlt-~GEGwHNnHHafP~~ 286 (417)
+.|.-+.+|++...+++. +.++++++ +-.|+|+-||.||..
T Consensus 172 lpH~~~~~~~~~~~~a~~~~~~~~~~~l~c~~fgyH~eHH~fP~~ 216 (225)
T cd03513 172 LPHRPGRGGFADRHRARSSRLSPVLSFLTCYHFGYHHEHHLSPST 216 (225)
T ss_pred cCCCCCCCCCCCcccceecCccHHHHHHHHHhcCcchhhccCCCC
Confidence 789889999987766665 56799988 333499999999985
No 10
>PLN02220 delta-9 acyl-lipid desaturase
Probab=98.15 E-value=7e-07 Score=89.45 Aligned_cols=49 Identities=10% Similarity=0.106 Sum_probs=38.4
Q ss_pred chHHHhhhhhhhccChh--hhhhcCCCCCCccccCceeeeecchhhhhhhHH
Q psy12870 155 GFFFSHMGWLMCKKHPD--VIEKGKGIDLADLEQDKLLMFQKKYYMILMPIF 204 (417)
Q Consensus 155 Gf~~sH~GWl~~~~~p~--~~~~~~~~~~~Dl~~Dp~~~~~~r~y~~~~~~~ 204 (417)
-++++.+|.+..+..|. +..++.++..+|-++||+.. .+.+++..+.++
T Consensus 92 ~~~la~~g~~a~Qgs~~~Wv~~HR~HH~~sDt~~DPHsp-~~Gfw~sH~gWl 142 (299)
T PLN02220 92 EYPFAYSALFALQGDPIDWVSTHRFHHQFTDSDRDPHSP-IEGFWFSHVLWI 142 (299)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCcccc-ccCcHHHHhHhh
Confidence 46778999999999987 45678888999999999998 345555555554
No 11
>cd03511 Rhizopine-oxygenase-like This CD includes the putative hydrocarbon oxygenase, MocD, a bacterial rhizopine (3-O-methyl-scyllo-inosamine, 3-O-MSI) oxygenase, and other related proteins. It has been proposed that MocD, MocE (Rieske-like ferredoxin), and MocF (ferredoxin reductase) under the regulation of MocR, act in concert to form a ferredoxin oxygenase system that demethylates 3-O-MSI to form scyllo-inosamine. This domain family appears to be structurally related to the membrane fatty acid desaturases and the alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA d
Probab=98.01 E-value=1.6e-05 Score=78.37 Aligned_cols=50 Identities=18% Similarity=0.106 Sum_probs=40.4
Q ss_pred hhccccccChHHHHHHHHHHHHhcccccchhhccccccccCC-CCCCCCCC
Q psy12870 102 WAHRSYKAKWPLRLILVIFNTIAFENHVYEWARDHRVHHKYS-ETNADPHN 151 (417)
Q Consensus 102 ~sHrSfka~~~lr~~L~~~gtla~qgs~~~Wv~~HR~HH~~s-Dt~~DPhs 151 (417)
.+|+++..++++..++..+.++....+...|...|..||+++ |+++||-.
T Consensus 65 ~~H~~~~~~~~~N~~~g~l~~~~~~~~~~~~~~~H~~HH~~~~~~~~Dpd~ 115 (285)
T cd03511 65 CVHGTAFATRWLNDAVGQIAGLMILLPPDFFRWSHARHHRYTQIPGRDPEL 115 (285)
T ss_pred hhcccccCCchHHHHHHHHHHHHhcCChHHHHHHHHHHhcCcCCCCCCCCC
Confidence 469998888888888766666666678889999999999999 56788854
No 12
>COG1398 OLE1 Fatty-acid desaturase [Lipid metabolism]
Probab=97.89 E-value=4.8e-06 Score=81.86 Aligned_cols=54 Identities=15% Similarity=0.057 Sum_probs=42.3
Q ss_pred cchHHHhhhhhhhccChh--hhhhcCCCCCCccccCceeeeecchhhhhhhHHHhh
Q psy12870 154 RGFFFSHMGWLMCKKHPD--VIEKGKGIDLADLEQDKLLMFQKKYYMILMPIFCFV 207 (417)
Q Consensus 154 rGf~~sH~GWl~~~~~p~--~~~~~~~~~~~Dl~~Dp~~~~~~r~y~~~~~~~~~~ 207 (417)
-.++++-+||+.++..+. +..+++++...|..+||+..=.+.+++.++.++.+.
T Consensus 81 Le~~la~~g~l~~~G~~~~W~~~HR~HHr~tDTd~DPh~~~~kGfw~shigWm~~~ 136 (289)
T COG1398 81 LEYVLAFWGALTTQGPAIEWVGIHRKHHRKTDTDQDPHYDSFKGFWWSHIGWMLLY 136 (289)
T ss_pred HHHHHHHHHHhhcCCCceeHHHHHHHhhcccCCCCCCCccccccchhhhcceeeec
Confidence 378889999999998886 445788888999999997766677777776665443
No 13
>PLN03198 delta6-acyl-lipid desaturase; Provisional
Probab=97.65 E-value=0.00024 Score=76.45 Aligned_cols=54 Identities=15% Similarity=0.118 Sum_probs=37.8
Q ss_pred HHHhhhhcchhhhhhhccccccChHHHHHHH-HHHHHhcccccchhhccccccccCCCCCC
Q psy12870 88 QASGLGITAGAHRLWAHRSYKAKWPLRLILV-IFNTIAFENHVYEWARDHRVHHKYSETNA 147 (417)
Q Consensus 88 ~~~~lgit~G~HRl~sHrSfka~~~lr~~L~-~~gtla~qgs~~~Wv~~HR~HH~~sDt~~ 147 (417)
.+..++..+| |.|+..++++.-++. +++.+..-.|..+|...|..||.++-..+
T Consensus 249 q~g~l~HD~~------H~s~~~~~~~n~~~g~~~~~~~~G~s~~~W~~~Hn~HH~~tN~~~ 303 (526)
T PLN03198 249 QCGWLSHDFL------HNQVFETRWLNEVVGYLIGNAVLGFSTGWWKEKHNLHHAAPNECD 303 (526)
T ss_pred HHHHHHHhcc------cccccCCcHHHHHHHHHHHHhhcCCCHHHHHHHHHHhccCCCCCC
Confidence 3444665555 777777776666654 33555555789999999999999987653
No 14
>cd03514 CrtR_beta-carotene-hydroxylase Beta-carotene hydroxylase (CrtR), the carotenoid zeaxanthin biosynthetic enzyme catalyzes the addition of hydroxyl groups to the beta-ionone rings of beta-carotene to form zeaxanthin and is found in bacteria and red algae. Carotenoids are important natural pigments; zeaxanthin and lutein are the only dietary carotenoids that accumulate in the macular region of the retina and lens. It is proposed that these carotenoids protect ocular tissues against photooxidative damage. CrtR does not show overall amino acid sequence similarity to the beta-carotene hydroxylases similar to CrtZ, an astaxanthin biosynthetic beta-carotene hydroxylase. However, CrtR does show sequence similarity to the green alga, Haematococcus pluvialis, beta-carotene ketolase (CrtW), which converts beta-carotene to canthaxanthin. Sequences of the CrtR_beta-carotene-hydroxylase domain family, as well as, the CrtW_beta-carotene-ketolase domain family appear to be structurally related
Probab=97.50 E-value=0.00021 Score=67.81 Aligned_cols=50 Identities=14% Similarity=0.168 Sum_probs=35.9
Q ss_pred hccccccChHHHHHHHHHHHHhcccccchhhccccccccCCCCC-CCCCCc
Q psy12870 103 AHRSYKAKWPLRLILVIFNTIAFENHVYEWARDHRVHHKYSETN-ADPHNA 152 (417)
Q Consensus 103 sHrSfka~~~lr~~L~~~gtla~qgs~~~Wv~~HR~HH~~sDt~-~DPhs~ 152 (417)
+|+++.-++++-.++..+.++..-.|...|...|..||+++.++ +||-..
T Consensus 46 ~H~~~~~~~~~N~~~g~~~~~~~~~~~~~w~~~H~~HH~~~~~~~~DpD~~ 96 (207)
T cd03514 46 SHKAASRNRWINELIGHVSAFFLGFPFPVFRRVHMQHHAHTNDPEKDPDHF 96 (207)
T ss_pred ccccccCCccHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCcCcCCcCccHH
Confidence 58888777776666544444433457789999999999999864 887544
No 15
>PLN02579 sphingolipid delta-4 desaturase
Probab=97.49 E-value=0.0013 Score=66.76 Aligned_cols=78 Identities=17% Similarity=0.189 Sum_probs=46.1
Q ss_pred CCchhHHHH-HHHHHHHHhhhhcchhhhhhhccccccChHHHHHHHHHHHH-hcccccchhhccccccccCCC-CCCCCC
Q psy12870 74 SAKWPTVIW-AILLYQASGLGITAGAHRLWAHRSYKAKWPLRLILVIFNTI-AFENHVYEWARDHRVHHKYSE-TNADPH 150 (417)
Q Consensus 74 ~~~w~t~~~-~~~~~~~~~lgit~G~HRl~sHrSfka~~~lr~~L~~~gtl-a~qgs~~~Wv~~HR~HH~~sD-t~~DPh 150 (417)
..+|..+++ +.++..+.+.++-+..|= .+|+++-.++++-.++.++..+ .+.....+|-+.|..||+++- .+.||-
T Consensus 67 ~~~w~~~l~~a~~~~g~~~~~lf~~~HD-~~Hg~~f~~~~~N~~lg~~~~l~~g~~~~~~~~~~H~~HH~~~n~~~~D~D 145 (323)
T PLN02579 67 DAGWPKILLVAYFFGGFLNHNLFLAIHE-LSHNLAFKTPVYNRWLGIFANLPIGIPMSVTFQKYHLEHHRFQGVDGIDMD 145 (323)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHH-hhHhhhcCCHHHHHHHHHHHHHhhcCCHhHHHHHHHHHHccCCCCCCCCCC
Confidence 455644333 223333333334444453 4688877788877776655443 444344579889999999995 455776
Q ss_pred Cc
Q psy12870 151 NA 152 (417)
Q Consensus 151 s~ 152 (417)
-+
T Consensus 146 i~ 147 (323)
T PLN02579 146 IP 147 (323)
T ss_pred CC
Confidence 55
No 16
>KOG1600|consensus
Probab=97.44 E-value=0.00019 Score=71.98 Aligned_cols=51 Identities=10% Similarity=0.088 Sum_probs=40.8
Q ss_pred chHHHhhhhhhhccChh--hhhhcCCCCCCccccCceeeeecchhhhhhhHHHh
Q psy12870 155 GFFFSHMGWLMCKKHPD--VIEKGKGIDLADLEQDKLLMFQKKYYMILMPIFCF 206 (417)
Q Consensus 155 Gf~~sH~GWl~~~~~p~--~~~~~~~~~~~Dl~~Dp~~~~~~r~y~~~~~~~~~ 206 (417)
-+|++-++-+..+..|. +..++-++...|-.+||+.. .+.++..++.+++.
T Consensus 103 r~fla~~~~~A~Qg~~~~WvrdHR~HHk~tdTD~DPhn~-~rGF~FsHvgWl~~ 155 (321)
T KOG1600|consen 103 RYFLAYCNTLAFQGDIIDWVRDHRVHHKFTDTDADPHNP-RRGFWFSHVGWLLD 155 (321)
T ss_pred HHHHHHHHHHhccCChhHHHhhhhhhccccccCCCCCCc-ccchhhhhhhhHhc
Confidence 67778999999998886 45577788999999999988 66677777776543
No 17
>cd03510 Rhizobitoxine-FADS-like This CD includes the dihydrorhizobitoxine fatty acid desaturase (RtxC) characterized in Bradyrhizobium japonicum USDA110, and other related proteins. Dihydrorhizobitoxine desaturase is reported to be involved in the final step of rhizobitoxine biosynthesis. This domain family appears to be structurally related to the membrane fatty acid desaturases and the alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXX(X)HH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA desaturase and alkane hydroxylase.
Probab=97.23 E-value=0.0013 Score=60.97 Aligned_cols=76 Identities=24% Similarity=0.264 Sum_probs=46.6
Q ss_pred chhHHHHHHHHHHHHhhhhcchhhhhhhccccccChHHHHHHH-HHHHHhcccccchhhccccccccCCCCCCCCCCc
Q psy12870 76 KWPTVIWAILLYQASGLGITAGAHRLWAHRSYKAKWPLRLILV-IFNTIAFENHVYEWARDHRVHHKYSETNADPHNA 152 (417)
Q Consensus 76 ~w~t~~~~~~~~~~~~lgit~G~HRl~sHrSfka~~~lr~~L~-~~gtla~qgs~~~Wv~~HR~HH~~sDt~~DPhs~ 152 (417)
+|...++++++....+.|+..-.| =.+|+++-.++.+..++. ++.++..-.+...|...|..||++..+++||--.
T Consensus 17 ~~~~~~l~~~~~g~~~~~l~~l~H-ea~H~~l~~~~~~N~~~g~~~~~~p~~~~~~~~r~~H~~HH~~~~~~~Dpd~~ 93 (175)
T cd03510 17 NWLAYLLAVLLIGARQRALAILMH-DAAHGLLFRNRRLNDFLGNWLAAVPIFQSLAAYRRSHLKHHRHLGTEDDPDLA 93 (175)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcccccccHHHHHHHHHHHhhhhCCHHHHHHHHHHHhCccCCCCCCcHH
Confidence 444333333333333333333333 345777776777766654 3333333347779999999999999999998765
No 18
>cd03509 DesA_FADS-like Fatty acid desaturase protein family subgroup, a delta-12 acyl-lipid desaturase-like, DesA-like, yet uncharacterized subgroup of membrane fatty acid desaturase proteins found in alpha-, beta-, and gamma-proteobacteria. Sequences of this domain family appear to be structurally related to membrane fatty acid desaturases and alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of these sequences also reveals three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA desaturase and alkane hydroxylase.
Probab=97.22 E-value=0.00098 Score=66.59 Aligned_cols=49 Identities=16% Similarity=0.142 Sum_probs=35.0
Q ss_pred hccccccChHHHHHHHHHHHHhcccccchhhccccccccCCC---CCCCCCCc
Q psy12870 103 AHRSYKAKWPLRLILVIFNTIAFENHVYEWARDHRVHHKYSE---TNADPHNA 152 (417)
Q Consensus 103 sHrSfka~~~lr~~L~~~gtla~qgs~~~Wv~~HR~HH~~sD---t~~DPhs~ 152 (417)
+|+++--++++--++..+. +..--+...|-..|-.||++++ .+.||-+.
T Consensus 49 ~Hg~~~~~~~~N~~~g~~~-~~l~~p~~~wr~~H~~HH~~~nl~~~~~Dpd~~ 100 (288)
T cd03509 49 LHGHPTRSRWVNEALGYPP-LALWYPYTRYRDTHLAHHRDEDLTDPGDDPESN 100 (288)
T ss_pred hccCcccChHHHHHHHHHH-HHHhcCHHHHHHHHHHHcCCCCCCCCCCCCccc
Confidence 6899888888777765442 2212366799999999999974 45788654
No 19
>cd03512 Alkane-hydroxylase Alkane hydroxylase is a bacterial, integral-membrane di-iron enzyme that shares a requirement for iron and oxygen for activity similar to that of the non-heme integral-membrane acyl coenzyme A (CoA) desaturases and acyl lipid desaturases. The alk genes in Pseudomonas oleovorans encode conversion of alkanes to acyl CoA. The alkane omega-hydroxylase (AlkB) system is responsible for the initial oxidation of inactivated alkanes. It is a three-component system comprising a soluble NADH-rubredoxin reductase (AlkT), a soluble rubredoxin (AlkG), and the integral membrane oxygenase (AlkB). AlkB utilizes the oxygen rebound mechanism to hydroxylate alkanes. This mechanism involves homolytic cleavage of the C-H bond by an electrophilic metal-oxo intermediate to generate a substrate-based radical. As with other members of this superfamily, this domain family has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. The active
Probab=97.21 E-value=0.0023 Score=64.64 Aligned_cols=76 Identities=29% Similarity=0.314 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHHHh-hhhcchhhhhhhccccccChHHHHHHHHHHHHhcccccchhhccccccccCCCCCCCCCCcccch
Q psy12870 78 PTVIWAILLYQASG-LGITAGAHRLWAHRSYKAKWPLRLILVIFNTIAFENHVYEWARDHRVHHKYSETNADPHNAKRGF 156 (417)
Q Consensus 78 ~t~~~~~~~~~~~~-lgit~G~HRl~sHrSfka~~~lr~~L~~~gtla~qgs~~~Wv~~HR~HH~~sDt~~DPhs~~rGf 156 (417)
..+.+++.+.++.+ +|+.+. |- ..||+-+.++++-.++ .... +....-.+.+|.||++..|++||-++++|-
T Consensus 71 ~~~~~~~~~G~~~g~i~~~~a-He-l~Hr~~~lnr~lg~~~---~~~~--~~~~~~~~H~~~HH~~v~tp~DP~tar~ge 143 (314)
T cd03512 71 EKVGLILSLGLLSGVIGINTA-HE-LIHRRSRLERWLGKLL---LASL--LYGHFAIEHVRGHHRYVATPEDPATARRGE 143 (314)
T ss_pred HHHHHHHHHHHHHHHhhHHHH-Hh-ccCCCChHHHHHHHHH---HHHh--cccceeeeecccCCCCCCCCCCccccccCc
Confidence 33444444554444 666543 43 3466644444443332 2222 222233444568999999999999997554
Q ss_pred -HHHh
Q psy12870 157 -FFSH 160 (417)
Q Consensus 157 -~~sH 160 (417)
+|+.
T Consensus 144 ~~y~f 148 (314)
T cd03512 144 SFYRF 148 (314)
T ss_pred cHHHH
Confidence 4443
No 20
>PLN03199 delta6-acyl-lipid desaturase-like protein; Provisional
Probab=97.18 E-value=0.0063 Score=65.01 Aligned_cols=43 Identities=14% Similarity=0.161 Sum_probs=30.0
Q ss_pred hccccccChHHHHHH-HHHHHHhcccccchhhccccccccCCCC
Q psy12870 103 AHRSYKAKWPLRLIL-VIFNTIAFENHVYEWARDHRVHHKYSET 145 (417)
Q Consensus 103 sHrSfka~~~lr~~L-~~~gtla~qgs~~~Wv~~HR~HH~~sDt 145 (417)
.|+++--++++--++ .+++.+..-.|..+|...|-.||.++-.
T Consensus 183 ~H~~~~~~~~~N~~~g~~~g~l~~G~S~~wW~~~Hn~HH~~tN~ 226 (485)
T PLN03199 183 LHHQVFKKRKHGDLGGIFWGDLMQGFSMQWWKNKHNGHHAVPNL 226 (485)
T ss_pred hhhhhhCCchHHHHHHHHHHHhccCCChHHHHHHHhhhhcCcCc
Confidence 366666656554443 3555554446889999999999999973
No 21
>COG3239 DesA Fatty acid desaturase [Lipid metabolism]
Probab=97.10 E-value=0.003 Score=64.56 Aligned_cols=50 Identities=14% Similarity=0.110 Sum_probs=39.0
Q ss_pred hhhccccccChHHHHHHHHHHHHhcccccchhhccccccccCCCCCCCCC
Q psy12870 101 LWAHRSYKAKWPLRLILVIFNTIAFENHVYEWARDHRVHHKYSETNADPH 150 (417)
Q Consensus 101 l~sHrSfka~~~lr~~L~~~gtla~qgs~~~Wv~~HR~HH~~sDt~~DPh 150 (417)
-..|+||.-++++--++.-+.+...-.++..|-..|..||+++-.++||.
T Consensus 84 d~~Hgs~~~~r~iNd~ig~l~~~~~~~p~~~wR~~H~~HH~~t~~~~~d~ 133 (343)
T COG3239 84 DCGHGSFFKNRWINDLIGHLAAALLLAPPVFWRISHNQHHAHTNILDDDP 133 (343)
T ss_pred hccccchhhhhhHHHHHHHHHHHHHhcChhhhhhhHHHhhcccCCCCCCH
Confidence 34599998888887776554444444778899999999999999888884
No 22
>cd03507 Delta12-FADS-like The Delta12 Fatty Acid Desaturase (Delta12-FADS)-like CD includes the integral-membrane enzymes, delta-12 acyl-lipid desaturases, oleate 12-hydroxylases, omega3 and omega6 fatty acid desaturases, and other related proteins, found in a wide range of organisms including higher plants, green algae, diatoms, nematodes, fungi, and bacteria. The expression of these proteins appears to be temperature dependent: decreases in temperature result in increased levels of fatty acid desaturation within membrane lipids subsequently altering cell membrane fluidity. An important enzyme for the production of polyunsaturates in plants is the oleate delta-12 desaturase (Arabidopsis FAD2) of the endoplasmic reticulum. This enzyme accepts l-acyl-2-oleoyl-sn-glycero-3-phosphocholine as substrate and requires NADH:cytochrome b oxidoreductase, cytochrome b, and oxygen for activity. FAD2 converts oleate(18:1) to linoleate (18:2) and is closely related to oleate 12-hydroxylase which cat
Probab=96.99 E-value=0.0069 Score=58.11 Aligned_cols=53 Identities=19% Similarity=0.202 Sum_probs=37.7
Q ss_pred hhhhhhccccccChHHHHHHHHHHHHhcccccchhhccccccccCCCC-CCCCCC
Q psy12870 98 AHRLWAHRSYKAKWPLRLILVIFNTIAFENHVYEWARDHRVHHKYSET-NADPHN 151 (417)
Q Consensus 98 ~HRl~sHrSfka~~~lr~~L~~~gtla~qgs~~~Wv~~HR~HH~~sDt-~~DPhs 151 (417)
.|=. +|+++-.++++..++..+..+....+...|...|..||+++-. ++||-.
T Consensus 51 ~He~-~H~~~~~~~~~N~~~g~~~~~~~~~p~~~w~~~H~~HH~~~~~~~~D~~~ 104 (222)
T cd03507 51 GHDC-GHGSFSDNRRLNDIVGHILHSPLLVPYHSWRISHNRHHAHTGNLEGDEVW 104 (222)
T ss_pred hhcc-CCcccccchhHHHHHHHHHHHHHhCChHHHHHHHHHHHhccCCCCCCCcc
Confidence 4433 6899888887777765433333346888999999999999764 677654
No 23
>cd03508 Delta4-sphingolipid-FADS-like The Delta4-sphingolipid Fatty Acid Desaturase (Delta4-sphingolipid-FADS)-like CD includes the integral-membrane enzymes, dihydroceramide Delta-4 desaturase, involved in the synthesis of sphingosine; and the human membrane fatty acid (lipid) desaturase (MLD), reported to modulate biosynthesis of the epidermal growth factor receptor; and other related proteins. These proteins are found in various eukaryotes including vertebrates, higher plants, and fungi. Studies show that MLD is localized to the endoplasmic reticulum. As with other members of this superfamily, this domain family has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for
Probab=96.58 E-value=0.037 Score=55.49 Aligned_cols=59 Identities=17% Similarity=0.071 Sum_probs=34.8
Q ss_pred hhhcchhhhhhhccccccChHHHHHHHH-HHHHhcccccc-hhhccccccccCCCCC-CCCCCc
Q psy12870 92 LGITAGAHRLWAHRSYKAKWPLRLILVI-FNTIAFENHVY-EWARDHRVHHKYSETN-ADPHNA 152 (417)
Q Consensus 92 lgit~G~HRl~sHrSfka~~~lr~~L~~-~gtla~qgs~~-~Wv~~HR~HH~~sDt~-~DPhs~ 152 (417)
.++.+..| =.+|+++-.++.+-.++.. ++...+. +.. .|-..|..||+++-++ .||=-+
T Consensus 57 ~~l~~l~H-d~~H~~~f~~~~~N~~~g~~~~~~~g~-p~~~~~r~~H~~HH~~~n~~~~DpDi~ 118 (289)
T cd03508 57 HSLFLAIH-EISHNLAFGKPLWNRLFGIFANLPIGV-PYSISFKKYHLEHHRYLGEDGLDTDIP 118 (289)
T ss_pred HHHHHHHH-HhHHHhhcCChHHHHHHHHHHHHHhcC-ChhhHHHHHHHHhccCCCCCCCCCCcc
Confidence 34434445 2357776666666555444 3333333 333 5888999999998754 476543
No 24
>cd01060 Membrane-FADS-like The membrane fatty acid desaturase (Membrane_FADS)-like CD includes membrane FADSs, alkane hydroxylases, beta carotene ketolases (CrtW-like), hydroxylases (CrtR-like), and other related proteins. They are present in all groups of organisms with the exception of archaea. Membrane FADSs are non-heme, iron-containing, oxygen-dependent enzymes involved in regioselective introduction of double bonds in fatty acyl aliphatic chains. They play an important role in the maintenance of the proper structure and functioning of biological membranes. Alkane hydroxylases are bacterial, integral-membrane di-iron enzymes that share a requirement for iron and oxygen for activity similar to that of membrane FADSs, and are involved in the initial oxidation of inactivated alkanes. Beta-carotene ketolase and beta-carotene hydroxylase are carotenoid biosynthetic enzymes for astaxanthin and zeaxanthin, respectively. This superfamily domain has extensive hydrophobic regions that would
Probab=96.23 E-value=0.0015 Score=55.30 Aligned_cols=58 Identities=34% Similarity=0.557 Sum_probs=45.8
Q ss_pred ccccccccCCCc---ccccccccccccCccCCCC-------CCCCCcccceeeeeecCccccccccCc
Q psy12870 276 WHNYHHVFPGLW---PQCSVNSAAHMWGQRPYDQ-------YINPSENLGVAVFALGEGWHNYHHVFP 333 (417)
Q Consensus 276 wHNnHHafP~~~---~~~~vns~~H~~G~~~~~~-------~~~s~n~~~~a~~t~GEgwHN~HH~fP 333 (417)
.|+-||+++.+. ....++++.|......... .+.+.|.++..+++.|+++|+.||.||
T Consensus 55 ~H~~HH~~~~~~~~D~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~H~~HHl~P 122 (122)
T cd01060 55 SHRRHHRYTNTPGKDPDSAVNYLEHYGGDRPFDTDGEWLRTTDNSRNGWLNLLLTGGLGYHNEHHLFP 122 (122)
T ss_pred HHHHHhcCcCCCCCCCccccchHhhcCCCCCcccccccccccccCcccHHHHHHhcccccccccccCc
Confidence 488999998763 2234788889766555554 467889999999999999999999998
No 25
>PLN02598 omega-6 fatty acid desaturase
Probab=94.26 E-value=0.17 Score=53.36 Aligned_cols=47 Identities=17% Similarity=0.229 Sum_probs=35.9
Q ss_pred hccccccChHHHHHHHHHHHHhcccccchhhccccccccCCC-CCCCC
Q psy12870 103 AHRSYKAKWPLRLILVIFNTIAFENHVYEWARDHRVHHKYSE-TNADP 149 (417)
Q Consensus 103 sHrSfka~~~lr~~L~~~gtla~qgs~~~Wv~~HR~HH~~sD-t~~DP 149 (417)
.|++|--++++.-++..+..+..--+...|-..|+.||+++. .+.||
T Consensus 147 ~H~s~~~~~~lN~~vG~~~~~~ll~p~~~wr~~H~~HH~~tn~~~~D~ 194 (421)
T PLN02598 147 GHNSFSKNQLVEDIVGTIAFTPLIYPFEPWRIKHNTHHAHTNKLVMDT 194 (421)
T ss_pred cccCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccCcCCCCCCC
Confidence 599998888887776444443334688999999999999986 57775
No 26
>KOG4232|consensus
Probab=94.00 E-value=0.54 Score=49.47 Aligned_cols=58 Identities=17% Similarity=0.116 Sum_probs=38.0
Q ss_pred HHhhhhcchhhhhhhccccccChHHHHHHHHHHHHhcccccchhhccccccccCCC-CCCCCCC
Q psy12870 89 ASGLGITAGAHRLWAHRSYKAKWPLRLILVIFNTIAFENHVYEWARDHRVHHKYSE-TNADPHN 151 (417)
Q Consensus 89 ~~~lgit~G~HRl~sHrSfka~~~lr~~L~~~gtla~qgs~~~Wv~~HR~HH~~sD-t~~DPhs 151 (417)
.+.++...|-+ +-||.++|=..+=.+.+..-.-.|+-+|...|-.||.++. =+.||=.
T Consensus 157 s~~l~Hd~gH~-----~i~~~~~wN~~~~~fv~n~L~G~sa~WW~~~H~~HHa~pN~~~~DpDi 215 (430)
T KOG4232|consen 157 SGWLQHDYGHL-----SIFKNSKWNHLAQKFVGNHLKGFSAAWWKSHHNQHHAAPNSLDKDPDI 215 (430)
T ss_pred HHHHhcccccc-----cccccccHHHHHHHHHhhhcccccHHHHHHHHhhhhccCccCCCCccc
Confidence 44466665533 4467777755554444444444699999999999999886 3555544
No 27
>PLN02505 omega-6 fatty acid desaturase
Probab=93.84 E-value=0.3 Score=50.93 Aligned_cols=47 Identities=17% Similarity=0.298 Sum_probs=34.4
Q ss_pred hccccccChHHHHHHH-HHHHHhcccccchhhccccccccCCC-CCCCCC
Q psy12870 103 AHRSYKAKWPLRLILV-IFNTIAFENHVYEWARDHRVHHKYSE-TNADPH 150 (417)
Q Consensus 103 sHrSfka~~~lr~~L~-~~gtla~qgs~~~Wv~~HR~HH~~sD-t~~DPh 150 (417)
.|+||--++++--++. +++.. ...+...|-..|+.||+++. .+.||-
T Consensus 108 gH~s~~~~~~lN~~vG~i~~~~-ll~p~~~Wr~~H~~HH~~tn~~~~D~~ 156 (381)
T PLN02505 108 GHHAFSDYQWLDDTVGLVLHSA-LLVPYFSWKYSHRRHHSNTGSLERDEV 156 (381)
T ss_pred cchhhhCChHHHHHHHHHHHHH-HcCCHHHHHHHHHHHhhccCCCCCCcc
Confidence 4888888777766653 34443 34788899999999999986 466663
No 28
>PLN02498 omega-3 fatty acid desaturase
Probab=93.60 E-value=0.19 Score=53.48 Aligned_cols=48 Identities=19% Similarity=0.254 Sum_probs=36.6
Q ss_pred hccccccChHHHHHHHHHHHHhcccccchhhccccccccCCC-CCCCCC
Q psy12870 103 AHRSYKAKWPLRLILVIFNTIAFENHVYEWARDHRVHHKYSE-TNADPH 150 (417)
Q Consensus 103 sHrSfka~~~lr~~L~~~gtla~qgs~~~Wv~~HR~HH~~sD-t~~DPh 150 (417)
.|+||--++++--++..+..+...-+...|-..|+.||+++- .++||-
T Consensus 172 gHgsf~~~k~lNd~vG~ll~~~ll~py~~Wr~sH~~HH~~Tn~~e~D~~ 220 (450)
T PLN02498 172 GHGSFSNNPKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDES 220 (450)
T ss_pred cccccccChHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCCCC
Confidence 489998888877776554455455788999999999999985 466664
No 29
>PF00487 FA_desaturase: Fatty acid desaturase This entry is only a subset of the Pfam family.; InterPro: IPR005804 Fatty acid desaturases are enzymes that catalyse the insertion of a double bond at the delta position of fatty acids. There seem to be two distinct families of fatty acid desaturases which do not seem to be evolutionary related. Family 1 is composed of: Stearoyl-CoA desaturase (SCD) (1.14.19.1 from EC) []. Family 2 is composed of: Bacterial fatty acid desaturases. Plant stearoyl-acyl-carrier-protein desaturase (1.14.19.1 from EC) [], this enzyme catalyzes the introduction of a double bond at the delta(9) position of steraoyl-ACP to produce oleoyl-ACP. This enzyme is responsible for the conversion of saturated fatty acids to unsaturated fatty acids in the synthesis of vegetable oils. Cyanobacterial DesA [], an enzyme that can introduce a second cis double bond at the delta(12) position of fatty acid bound to membranes glycerolipids. DesA is involved in chilling tolerance; the phase transition temperature of lipids of cellular membranes being dependent on the degree of unsaturation of fatty acids of the membrane lipids. This entry contains fatty acid desaturases belonging to Family 1. ; GO: 0006629 lipid metabolic process
Probab=90.17 E-value=0.17 Score=46.53 Aligned_cols=34 Identities=24% Similarity=0.262 Sum_probs=26.5
Q ss_pred ccCCCCCCCCCcccceeeeeecCccccccccCcc
Q psy12870 301 QRPYDQYINPSENLGVAVFALGEGWHNYHHVFPW 334 (417)
Q Consensus 301 ~~~~~~~~~s~n~~~~a~~t~GEgwHN~HH~fP~ 334 (417)
+......++..++.++.++++|+++|+.||.||.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~H~~HHl~P~ 229 (257)
T PF00487_consen 196 YRQLPGSSNVHNSWWLNWLTGGLNYHIEHHLFPG 229 (257)
T ss_pred cccccccccccCchhhhccccCCCChHHhCCCCC
Confidence 3333333447788899999999999999999994
No 30
>cd03513 CrtW_beta-carotene-ketolase Beta-carotene ketolase/oxygenase (CrtW, also known as CrtO), the carotenoid astaxanthin biosynthetic enzyme, initially catalyzes the addition of two keto groups to carbons C4 and C4' of beta-carotene. Carotenoids are important natural pigments produced by many microorganisms and plants. Astaxanthin is reported to be an antioxidant, an anti-cancer agent, and an immune system stimulant. A number of bacteria and green algae can convert beta-carotene into astaxanthin by using several ketocarotenoids as intermediates and CrtW and a beta-carotene hydroxylase (CrtZ). CrtW initially converts beta-carotene to canthaxanthin via echinenone, and CrtZ initially mediates the conversion of beta-carotene to zeaxanthin via beta-cryptoxanthin. After a few more intermediates are formed, CrtW and CrtZ act in combination to produce astaxanthin. Sequences of this domain family appear to be structurally related to membrane fatty acid desaturases and alkane hydroxylases. Th
Probab=87.39 E-value=0.19 Score=48.69 Aligned_cols=44 Identities=18% Similarity=0.310 Sum_probs=33.3
Q ss_pred cccccCccCCCCCCCCCc---ccceeeee---ecCccccccccCcccccccccCCccc
Q psy12870 295 AAHMWGQRPYDQYINPSE---NLGVAVFA---LGEGWHNYHHVFPWDYKTAELGNYRA 346 (417)
Q Consensus 295 ~~H~~G~~~~~~~~~s~n---~~~~a~~t---~GEgwHN~HH~fP~dyr~~~~~~~~~ 346 (417)
+.|..+.++++..++||. +.++++++ || +|+-||.||. .-||++
T Consensus 172 lpH~~~~~~~~~~~~a~~~~~~~~~~~l~c~~fg--yH~eHH~fP~------~Pw~~L 221 (225)
T cd03513 172 LPHRPGRGGFADRHRARSSRLSPVLSFLTCYHFG--YHHEHHLSPS------TPWWRL 221 (225)
T ss_pred cCCCCCCCCCCCcccceecCccHHHHHHHHHhcC--cchhhccCCC------CCcccC
Confidence 456566678887777777 57788888 66 9999999995 456764
No 31
>COG5274 CYB5 Cytochrome b involved in lipid metabolism [Energy production and conversion / Lipid metabolism]
Probab=81.23 E-value=0.75 Score=42.71 Aligned_cols=40 Identities=5% Similarity=-0.193 Sum_probs=36.5
Q ss_pred CCCCcccceeeeeecCccccccccCcccccccccCCccccchH
Q psy12870 308 INPSENLGVAVFALGEGWHNYHHVFPWDYKTAELGNYRANLTT 350 (417)
Q Consensus 308 ~~s~n~~~~a~~t~GEgwHN~HH~fP~dyr~~~~~~~~~D~t~ 350 (417)
+++++....++.+.||| ||||.+|-|||+.. .||+++++.
T Consensus 2 ~s~~~~~~~~l~~~~~~--~~~~~~~~d~~~~~-~~~~~~~~~ 41 (164)
T COG5274 2 ASKTSEKCVILSDGPKY--TNKLYAGKDHAALD-WDSLVQEHA 41 (164)
T ss_pred CcccccceEEEeecCCc--ceeeecCccHHHHh-HHHhhcchh
Confidence 46788889999999999 99999999999995 789999999
No 32
>KOG2987|consensus
Probab=74.08 E-value=36 Score=34.19 Aligned_cols=73 Identities=18% Similarity=0.320 Sum_probs=41.2
Q ss_pred hcCCchhHHHHHHHHHHHHh---hhhcchhhhhhhccccccChHH--HHHHHHHHHHhcccccchhhccccccccCCCCC
Q psy12870 72 VTSAKWPTVIWAILLYQASG---LGITAGAHRLWAHRSYKAKWPL--RLILVIFNTIAFENHVYEWARDHRVHHKYSETN 146 (417)
Q Consensus 72 ~~~~~w~t~~~~~~~~~~~~---lgit~G~HRl~sHrSfka~~~l--r~~L~~~gtla~qgs~~~Wv~~HR~HH~~sDt~ 146 (417)
....+|..+++. -|++++ =..|+..|-+=--.+|+.++++ |++.+++.--.+.-=.+..-.-|-.||+|-..|
T Consensus 61 l~dl~W~~il~~--AYf~gg~iNhsl~LAIHeiSHN~aFg~~rpl~NR~~g~fANLPigvP~siSFkkYHleHHry~G~D 138 (324)
T KOG2987|consen 61 LRDLDWKWILFI--AYFFGGFINHSLTLAIHEISHNLAFGTNRPLYNRIFGFFANLPIGVPMSISFKKYHLEHHRYLGVD 138 (324)
T ss_pred HhcccHHHHHHH--HHHhhhhhchhHHHHHHHhhhhhhcccCchHHHHHHHHhhcCcccCceeeeehhhhhHHhHhcCCc
Confidence 345677655442 244433 3566666765444689997765 444444333222222245556799999997544
No 33
>PF10520 Kua-UEV1_localn: Kua-ubiquitin conjugating enzyme hybrid localisation domain; InterPro: IPR019547 This entry represents part of the transcript of the fusion of two genes, the UEV1. UEV1 is an enzymatically inactive variant of the E2 ubiquitin-conjugating enzymes that regulate non-canonical elongation of ubiquitin chains, and Kua, an otherwise unknown gene. UEV1A is a nuclear protein, whereas both Kua and Kua-UEV localise to cytoplasmic structures, indicating that the addition of a Kua domain to UEV confers new biological properties. UEV1-Kua carries the B domain with its characteristic double histidine motif, and it is probably this domain which determines the cytoplasmic localisation. It is postulated that this hybrid transcript could preferentially direct the variant polyubiquitination of substrates closely associated with the cytoplasmic face of the endoplasmic reticulum, possibly, although not necessarily, in conjunction with membrane-bound ubiquitin-conjugating enzymes [].
Probab=71.85 E-value=13 Score=35.14 Aligned_cols=47 Identities=23% Similarity=0.412 Sum_probs=30.5
Q ss_pred hhhcchhhhhhhccccccChHHHHHHHHHHHHhcccccchhhccccccccCCCCCCCCCCcc
Q psy12870 92 LGITAGAHRLWAHRSYKAKWPLRLILVIFNTIAFENHVYEWARDHRVHHKYSETNADPHNAK 153 (417)
Q Consensus 92 lgit~G~HRl~sHrSfka~~~lr~~L~~~gtla~qgs~~~Wv~~HR~HH~~sDt~~DPhs~~ 153 (417)
..+|--.|+ |||.-++-+++++++- .+...-|+. .||.||+ .||+.+
T Consensus 95 v~~tnq~Hk-WsH~~~~~P~~V~~LQ----~~gillsr~----~H~~HH~------aPh~~~ 141 (178)
T PF10520_consen 95 VAFTNQFHK-WSHTYKSLPPWVRFLQ----DAGILLSRK----HHRIHHV------APHDTN 141 (178)
T ss_pred HHHHHHHHH-HHcCCCCCCHHHHHHH----HCCcccCch----hhhcccc------CcccCC
Confidence 445555775 8999777666666543 222223443 6999999 788774
No 34
>PLN02434 fatty acid hydroxylase
Probab=59.33 E-value=40 Score=33.20 Aligned_cols=14 Identities=21% Similarity=0.093 Sum_probs=11.0
Q ss_pred hhcchhhhhhhccc
Q psy12870 93 GITAGAHRLWAHRS 106 (417)
Q Consensus 93 git~G~HRl~sHrS 106 (417)
=+.=..||..-|.-
T Consensus 96 l~EY~lHRflfH~~ 109 (237)
T PLN02434 96 LLEYILHRFLFHIK 109 (237)
T ss_pred HHHHHHHHHHHcCC
Confidence 35667999999974
No 35
>cd00547 QFR_TypeD_subunitD Quinol:fumarate reductase (QFR) Type D subfamily, 13kD hydrophobic subunit D; QFR couples the reduction of fumarate to succinate to the oxidation of quinol to quinone, the opposite reaction to that catalyzed by the related protein, succinate:quinine oxidoreductase (SQR). QFRs oxidize low potential quinols such as menaquinol and are involved in anaerobic respiration with fumarate as the terminal electron acceptor. SQR and QFR share a common subunit arrangement, composed of a flavoprotein catalytic subunit, an iron-sulfur protein and one or two hydrophobic transmembrane subunits. Members of this subfamily are classified as Type D as they contain two transmembrane subunits (C and D) and no heme groups. The structural arrangement allows efficient electron transfer between the catalytic subunit, through iron-sulfur centers, and the transmembrane subunit containing the electron donor (quinol). The quinone binding site resides in the transmembrane subunits.
Probab=55.45 E-value=15 Score=32.37 Aligned_cols=41 Identities=24% Similarity=0.552 Sum_probs=31.5
Q ss_pred cchhhhhhhccccccChHHHHHHHHHHHHhcccccchhhccccccccCCC
Q psy12870 95 TAGAHRLWAHRSYKAKWPLRLILVIFNTIAFENHVYEWARDHRVHHKYSE 144 (417)
Q Consensus 95 t~G~HRl~sHrSfka~~~lr~~L~~~gtla~qgs~~~Wv~~HR~HH~~sD 144 (417)
...|.|..+ |-.++.-+.++..+-.+ --|.+.||.||.--|
T Consensus 44 a~~y~~i~a---Fa~s~iG~l~ll~~i~l------plWh~~HRihh~lHD 84 (115)
T cd00547 44 ALSYDRIIA---FAQSWIGKLFLLVLIIL------PMWHAMHRIHHGLHD 84 (115)
T ss_pred ccCHHHHHH---HHHhHHHHHHHHHHHHH------HHHHHHHHHHHhhhc
Confidence 678999876 88888888886444333 359999999998776
No 36
>PRK05470 fumarate reductase subunit D; Provisional
Probab=55.23 E-value=14 Score=32.62 Aligned_cols=41 Identities=22% Similarity=0.457 Sum_probs=31.1
Q ss_pred cchhhhhhhccccccChHHHHHHHHHHHHhcccccchhhccccccccCCC
Q psy12870 95 TAGAHRLWAHRSYKAKWPLRLILVIFNTIAFENHVYEWARDHRVHHKYSE 144 (417)
Q Consensus 95 t~G~HRl~sHrSfka~~~lr~~L~~~gtla~qgs~~~Wv~~HR~HH~~sD 144 (417)
...|.|..+ |-.+..-+.++..+-.+ --|.+.||.||.--|
T Consensus 48 a~sy~~i~a---Fa~s~iG~l~ll~~i~l------plWh~~HRihHglHD 88 (118)
T PRK05470 48 ALSYERVLA---FAQSFIGKLFLLLMIVL------PLWCGLHRIHHGMHD 88 (118)
T ss_pred ccCHHHHHH---HHHhHHHHHHHHHHHHH------HHHHHHHHHHHHHhc
Confidence 577899876 88888888886544433 359999999998766
No 37
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=31.55 E-value=80 Score=29.16 Aligned_cols=23 Identities=22% Similarity=0.628 Sum_probs=18.8
Q ss_pred CchhHHHHHHHHHHHHhhhhcch
Q psy12870 75 AKWPTVIWAILLYQASGLGITAG 97 (417)
Q Consensus 75 ~~w~t~~~~~~~~~~~~lgit~G 97 (417)
..|.+++..++++.++.+||+-|
T Consensus 95 P~~~~~~~S~~~Fg~gllGisYG 117 (153)
T PF11947_consen 95 PPWAVLLVSLVFFGLGLLGISYG 117 (153)
T ss_pred CchHHHHHHHHHHHHHHHhhhhh
Confidence 46777777888888899999988
No 38
>PLN02601 beta-carotene hydroxylase
Probab=22.90 E-value=2e+02 Score=29.16 Aligned_cols=29 Identities=24% Similarity=0.337 Sum_probs=19.8
Q ss_pred hhhhhhhccccccCh-----HHHHHHHHHHHHhcccccchhhcccccccc
Q psy12870 97 GAHRLWAHRSYKAKW-----PLRLILVIFNTIAFENHVYEWARDHRVHHK 141 (417)
Q Consensus 97 G~HRl~sHrSfka~~-----~lr~~L~~~gtla~qgs~~~Wv~~HR~HH~ 141 (417)
..|=.++||-|+..+ .+|.+-. -|+.||+
T Consensus 226 fVHDgLVHqRfp~~~~a~~~Y~rrl~~----------------AHklHHa 259 (303)
T PLN02601 226 FVHDGLVHKRFPVGPIANVPYLRKVAA----------------AHQLHHT 259 (303)
T ss_pred HHhhhhhccccccCCCCCCHHHHHHHH----------------HHHhhcc
Confidence 368888999887653 2444332 3999999
No 39
>COG3000 ERG3 Sterol desaturase [Lipid metabolism]
Probab=22.63 E-value=2.2e+02 Score=28.05 Aligned_cols=31 Identities=39% Similarity=0.510 Sum_probs=19.5
Q ss_pred hhhccccccChHHHHHHHHHHHHhcccccchhhccccccccCCCCCCCCCCc
Q psy12870 101 LWAHRSYKAKWPLRLILVIFNTIAFENHVYEWARDHRVHHKYSETNADPHNA 152 (417)
Q Consensus 101 l~sHrSfka~~~lr~~L~~~gtla~qgs~~~Wv~~HR~HH~~sDt~~DPhs~ 152 (417)
+|+||.+=..+.+. +.|+.||+.. ..||-++
T Consensus 111 Y~~HR~~H~~~~~w-------------------~~H~~HH~~~--~~~~~t~ 141 (271)
T COG3000 111 YWAHRLLHRVPLLW-------------------AFHKVHHSSE--VPDPLTA 141 (271)
T ss_pred HHHHHHHhhhHHHH-------------------HHHHhhcCcc--cCCchhh
Confidence 77787776655544 3399999843 3455544
No 40
>PLN02869 fatty aldehyde decarbonylase
Probab=22.49 E-value=1.2e+02 Score=33.84 Aligned_cols=31 Identities=13% Similarity=0.270 Sum_probs=23.0
Q ss_pred ccccccccCCCCCCCCCCcccchHHHhhhhhhhccChh
Q psy12870 134 RDHRVHHKYSETNADPHNAKRGFFFSHMGWLMCKKHPD 171 (417)
Q Consensus 134 ~~HR~HH~~sDt~~DPhs~~rGf~~sH~GWl~~~~~p~ 171 (417)
+.|+.||+..| .+-|+++.-.-+++...+|.
T Consensus 246 sfHdlHHs~fd-------~NYGlfF~~WDrLFGT~d~~ 276 (620)
T PLN02869 246 SYHSLHHTQFR-------TNYSLFMPIYDYIYGTMDKS 276 (620)
T ss_pred hHHhHHhccCC-------cCcccchHHHHhccCCCCCC
Confidence 35999999753 46788888888888765553
No 41
>PLN02601 beta-carotene hydroxylase
Probab=21.99 E-value=1.3e+02 Score=30.39 Aligned_cols=18 Identities=28% Similarity=-0.021 Sum_probs=12.2
Q ss_pred HHhhhhcchhhhhhhccc
Q psy12870 89 ASGLGITAGAHRLWAHRS 106 (417)
Q Consensus 89 ~~~lgit~G~HRl~sHrS 106 (417)
+.+=++.-..||+.-|.+
T Consensus 145 vgMEf~Aw~aHKYvMHG~ 162 (303)
T PLN02601 145 VGMEFWARWAHRALWHDS 162 (303)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 344555666899888864
No 42
>cd03506 Delta6-FADS-like The Delta6 Fatty Acid Desaturase (Delta6-FADS)-like CD includes the integral-membrane enzymes: delta-4, delta-5, delta-6, delta-8, delta-8-sphingolipid, and delta-11 desaturases found in vertebrates, higher plants, fungi, and bacteria. These desaturases are required for the synthesis of highly unsaturated fatty acids (HUFAs), which are mainly esterified into phospholipids and contribute to maintaining membrane fluidity. While HUFAs may be required for cold tolerance in bacteria, plants and fish, the primary role of HUFAs in mammals is cell signaling. These enzymes are described as front-end desaturases because they introduce a double bond between the pre-exiting double bond and the carboxyl (front) end of the fatty acid. Various substrates are involved, with both acyl-coenzyme A (CoA) and acyl-lipid desaturases present in this CD. Acyl-lipid desaturases are localized in the membranes of cyanobacterial thylakoid, plant endoplasmic reticulum (ER), and plastid; an
Probab=21.18 E-value=33 Score=32.12 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=20.7
Q ss_pred CcccceeeeeecCccccccccCcc
Q psy12870 311 SENLGVAVFALGEGWHNYHHVFPW 334 (417)
Q Consensus 311 ~n~~~~a~~t~GEgwHN~HH~fP~ 334 (417)
+++.++..++.|.+.|.-||.||.
T Consensus 159 ~~~~~~~~l~ggln~qieHHLfP~ 182 (204)
T cd03506 159 TGSPFLDWLHGGLNYQIEHHLFPT 182 (204)
T ss_pred CCCCHHHHHhcchhhHHHHhcCCC
Confidence 356688889999999999999995
No 43
>smart00541 FYRN "FY-rich" domain, N-terminal region. is sometimes closely juxtaposed with the C-terminal region (FYRC), but sometimes is far distant. Unknown function, but occurs frequently in chromatin-associated proteins.
Probab=20.74 E-value=36 Score=24.78 Aligned_cols=32 Identities=19% Similarity=0.205 Sum_probs=25.1
Q ss_pred eeecCccccccccCcccccccccCCccccchH
Q psy12870 319 FALGEGWHNYHHVFPWDYKTAELGNYRANLTT 350 (417)
Q Consensus 319 ~t~GEgwHN~HH~fP~dyr~~~~~~~~~D~t~ 350 (417)
+..+++|||-..-||-.|++.+.-|--.||+.
T Consensus 3 ~~~~~~fh~~~~IyP~Gy~s~R~y~S~~dp~~ 34 (44)
T smart00541 3 PIQGKLFHSEDAIFPVGYKSTRKYWSVKDPNR 34 (44)
T ss_pred cccCCCcccCCEEecCCEEEEEEEecccCCCC
Confidence 45689999999999999999975444467654
Done!