Query psy12870
Match_columns 417
No_of_seqs 187 out of 1340
Neff 5.5
Searched_HMMs 29240
Date Fri Aug 16 21:52:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12870.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12870hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1kf6_D Fumarate reductase 13 k 27.8 81 0.0028 26.8 5.0 40 96-144 50-89 (119)
2 3h8d_A Myosin-VI; myosin VI, m 6.7 51 0.0017 28.5 -1.9 20 143-162 25-44 (141)
3 2wzo_A Transforming growth fac 5.0 2.6E+02 0.0089 23.8 1.5 27 323-349 25-51 (146)
4 1xmp_A PURE, phosphoribosylami 4.6 3.2E+02 0.011 24.4 1.9 25 346-370 24-48 (170)
5 3owv_A DNA-entry nuclease; seq 4.6 1.4E+02 0.0048 28.4 -0.5 30 274-306 114-143 (248)
6 2kta_A Putative helicase; PSI, 3.8 3.3E+02 0.011 20.8 1.2 19 348-366 50-68 (74)
7 3gv0_A Transcriptional regulat 3.8 2.1E+02 0.0071 25.6 0.0 12 270-281 277-288 (288)
8 1o4v_A Phosphoribosylaminoimid 3.6 4.1E+02 0.014 24.0 1.7 25 346-370 26-50 (183)
9 1v54_G Cytochrome C oxidase po 3.5 5.4E+02 0.019 20.3 2.2 21 49-69 14-34 (85)
10 4aq5_E Acetylcholine receptor 3.4 1.7E+03 0.06 22.2 6.6 42 128-170 296-337 (488)
No 1
>1kf6_D Fumarate reductase 13 kDa hydrophobic protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: f.21.2.2 PDB: 1kfy_D* 1l0v_D* 2b76_D* 3cir_D* 3p4p_D* 3p4q_D* 3p4r_D* 3p4s_D*
Probab=27.85 E-value=81 Score=26.75 Aligned_cols=40 Identities=20% Similarity=0.430 Sum_probs=28.0
Q ss_pred chhhhhhhccccccChHHHHHHHHHHHHhcccccchhhccccccccCCC
Q psy12870 96 AGAHRLWAHRSYKAKWPLRLILVIFNTIAFENHVYEWARDHRVHHKYSE 144 (417)
Q Consensus 96 ~G~HRl~sHrSfka~~~lr~~L~~~gtla~qgs~~~Wv~~HR~HH~~sD 144 (417)
..|.|.. +|-.++.-+.++..+-.+ --|.+.||.||.--|
T Consensus 50 lsY~~~~---aFa~s~ig~l~ll~~i~l------plWh~~HRihh~lHD 89 (119)
T 1kf6_D 50 LSYERVL---AFAQSFIGRVFLFLMIVL------PLWCGLHRMHHAMHD 89 (119)
T ss_dssp TSHHHHH---HHHTSHHHHHHHHHHHHH------HHHHHHHHHHHHHHH
T ss_pred ccHHHHH---HHHhcHHHHHHHHHHHHH------HHHHHHHHHHHhhhh
Confidence 3677765 477788777776443333 359999999998665
No 2
>3h8d_A Myosin-VI; myosin VI, myosin 6, DAB2, cargo binding, protein-peptide complex, actin-binding, ATP-binding, calmodulin-binding; 2.20A {Mus musculus} PDB: 2kia_A
Probab=6.74 E-value=51 Score=28.54 Aligned_cols=20 Identities=30% Similarity=0.875 Sum_probs=16.7
Q ss_pred CCCCCCCCCcccchHHHhhh
Q psy12870 143 SETNADPHNAKRGFFFSHMG 162 (417)
Q Consensus 143 sDt~~DPhs~~rGf~~sH~G 162 (417)
+|...+|.++++|+||+|+-
T Consensus 25 ~~~~k~~~~~k~G~WYAHFd 44 (141)
T 3h8d_A 25 ADQYKDPQNKKKGWWYAHFD 44 (141)
T ss_dssp GGTTSCGGGCCEEEEEEEEE
T ss_pred cccccCCCCcccceEEEeeC
Confidence 56677888889999999985
No 3
>2wzo_A Transforming growth factor beta regulator 1; nucleus, cell cycle, tumor suppressor; 1.60A {Homo sapiens}
Probab=5.00 E-value=2.6e+02 Score=23.78 Aligned_cols=27 Identities=15% Similarity=0.315 Sum_probs=19.7
Q ss_pred CccccccccCcccccccccCCccccch
Q psy12870 323 EGWHNYHHVFPWDYKTAELGNYRANLT 349 (417)
Q Consensus 323 EgwHN~HH~fP~dyr~~~~~~~~~D~t 349 (417)
++|||=++.||=-|++.+.-|--.||.
T Consensus 25 ~~fh~~~~IyPvGy~~~R~y~s~~dp~ 51 (146)
T 2wzo_A 25 PGFHDESAIYPVGYCSTRIYASMKCPD 51 (146)
T ss_dssp GGGBCSSCBCCEEEEEEEEEECSSCTT
T ss_pred CCccCCCceeCCCEEEEEEEecccCCC
Confidence 579999999999999986432223554
No 4
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=4.64 E-value=3.2e+02 Score=24.40 Aligned_cols=25 Identities=24% Similarity=0.215 Sum_probs=20.0
Q ss_pred ccchHHHHHHHhhhccccccccCCH
Q psy12870 346 ANLTTGFIDFFAKLGWAYDLKTVSH 370 (417)
Q Consensus 346 ~D~t~~~I~~l~~lGla~~lk~~~~ 370 (417)
+....-....|+.+|.-+|++..+.
T Consensus 24 ~~v~~~a~~~L~~~Gi~~dv~V~Sa 48 (170)
T 1xmp_A 24 WETMKYACDILDELNIPYEKKVVSA 48 (170)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEec
Confidence 3445577899999999999987764
No 5
>3owv_A DNA-entry nuclease; sequence nonspecific endonuclease, hydrolase; 1.75A {Streptococcus pneumoniae}
Probab=4.56 E-value=1.4e+02 Score=28.35 Aligned_cols=30 Identities=20% Similarity=0.498 Sum_probs=17.3
Q ss_pred ccccccccccCCCcccccccccccccCccCCCC
Q psy12870 274 EGWHNYHHVFPGLWPQCSVNSAAHMWGQRPYDQ 306 (417)
Q Consensus 274 EGwHNnHHafP~~~~~~~vns~~H~~G~~~~~~ 306 (417)
-|||++.- ..+.+ .++.| =||..||+..-.
T Consensus 114 tGWh~~k~-~~G~y-~~l~N-RgHLIgyqL~G~ 143 (248)
T 3owv_A 114 PGWHQVKN-LKGSY-THAVD-RGALLGYALIGG 143 (248)
T ss_dssp TTCCCCCS-CSSSC-SSSEE-EEESSCHHHHTT
T ss_pred CCcccccc-CCCce-eeecc-ccceehhhhcCC
Confidence 49999863 22321 12222 379999987554
No 6
>2kta_A Putative helicase; PSI, NESG, GFT ATP-binding, nucleotide-binding, structu genomics, protein structure initiative; NMR {Bacteroides vulgatus}
Probab=3.84 E-value=3.3e+02 Score=20.78 Aligned_cols=19 Identities=21% Similarity=0.438 Sum_probs=15.3
Q ss_pred chHHHHHHHhhhccccccc
Q psy12870 348 LTTGFIDFFAKLGWAYDLK 366 (417)
Q Consensus 348 ~t~~~I~~l~~lGla~~lk 366 (417)
++.-=|+.|+.||.+|+|.
T Consensus 50 Ls~eRi~~L~~lGf~w~~~ 68 (74)
T 2kta_A 50 LPNDRRLLLDKIGFVWSLE 68 (74)
T ss_dssp CCHHHHHHHHHHTCCCCCC
T ss_pred CCHHHHHHHHHcCCEeccc
Confidence 4445599999999999985
No 7
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=3.83 E-value=2.1e+02 Score=25.63 Aligned_cols=12 Identities=50% Similarity=0.750 Sum_probs=0.0
Q ss_pred HHhhcccccccc
Q psy12870 270 FALGEGWHNYHH 281 (417)
Q Consensus 270 lt~GEGwHNnHH 281 (417)
..-|||||..||
T Consensus 277 ~~~~~~~~~~~~ 288 (288)
T 3gv0_A 277 MAPKEGHHHHHH 288 (288)
T ss_dssp ------------
T ss_pred cCCcccccccCC
Confidence 456899998877
No 8
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=3.62 E-value=4.1e+02 Score=24.00 Aligned_cols=25 Identities=16% Similarity=0.349 Sum_probs=20.0
Q ss_pred ccchHHHHHHHhhhccccccccCCH
Q psy12870 346 ANLTTGFIDFFAKLGWAYDLKTVSH 370 (417)
Q Consensus 346 ~D~t~~~I~~l~~lGla~~lk~~~~ 370 (417)
+....-....|+.+|.-+|++..+.
T Consensus 26 ~~v~~~a~~~L~~~Gi~~dv~V~Sa 50 (183)
T 1o4v_A 26 LPVMKQAAEILEEFGIDYEITIVSA 50 (183)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCT
T ss_pred HHHHHHHHHHHHHcCCCeEEEEEcc
Confidence 3445577899999999999987764
No 9
>1v54_G Cytochrome C oxidase polypeptide VIA-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.2.1 PDB: 1v55_G* 2dyr_G* 2dys_G* 2eij_G* 2eik_G* 2eil_G* 2eim_G* 2ein_G* 2zxw_G* 3abk_G* 3abl_G* 3abm_G* 3ag1_G* 3ag2_G* 3ag3_G* 3ag4_G* 3asn_G* 3aso_G* 2occ_G* 1oco_G* ...
Probab=3.50 E-value=5.4e+02 Score=20.31 Aligned_cols=21 Identities=24% Similarity=0.178 Sum_probs=16.3
Q ss_pred eEehhhHHHHHHHHHHHHHHH
Q psy12870 49 IVWRNVILFAYLHLAALYGAY 69 (417)
Q Consensus 49 i~W~~v~~~~~lhl~al~g~~ 69 (417)
-.|.++-+++.+++++|+++.
T Consensus 14 ~~Wkkis~~va~P~v~l~~~n 34 (85)
T 1v54_G 14 RTWRFLTFGLALPSVALCTLN 34 (85)
T ss_dssp HHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 468888888888888887654
No 10
>4aq5_E Acetylcholine receptor gamma subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_E
Probab=3.43 E-value=1.7e+03 Score=22.20 Aligned_cols=42 Identities=10% Similarity=0.043 Sum_probs=11.9
Q ss_pred ccchhhccccccccCCCCCCCCCCcccchHHHhhhhhhhccCh
Q psy12870 128 HVYEWARDHRVHHKYSETNADPHNAKRGFFFSHMGWLMCKKHP 170 (417)
Q Consensus 128 s~~~Wv~~HR~HH~~sDt~~DPhs~~rGf~~sH~GWl~~~~~p 170 (417)
+.+.=+..-..||+-.+|..=|... |-+|...++++++-+.|
T Consensus 296 Sll~tv~Vlnl~~r~~~~~~mp~w~-r~~~l~~l~~~l~m~~p 337 (488)
T 4aq5_E 296 IVTNCVIVLNVSLRTPNTHSLSEKI-KHLFLEFLPKYLGMHLE 337 (488)
T ss_dssp HHHHHHHHHHHTTCSTTTCC-----------------------
T ss_pred HHHHHhhEEEEEccCCCCCcCChhH-hhhhHhhCcceeEecCC
Confidence 3444444567788766665555554 56777788887764444
Done!