Query psy12870
Match_columns 417
No_of_seqs 187 out of 1340
Neff 5.5
Searched_HMMs 13730
Date Fri Aug 16 21:52:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12870.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/12870hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1kf6d_ f.21.2.2 (D:) Fumarate 43.5 15 0.0011 29.2 5.0 45 91-144 41-89 (119)
2 d1v54g_ f.23.2.1 (G:) Mitochon 4.5 1.9E+02 0.014 21.1 2.2 19 50-68 15-33 (84)
3 d2axti1 f.23.37.1 (I:1-35) Pho 4.4 1.4E+02 0.01 18.3 1.1 8 266-273 15-22 (35)
4 d1k8ua_ a.39.1.2 (A:) Calcycli 4.0 80 0.0058 22.9 -0.4 14 140-153 16-29 (89)
5 d1oedc_ f.36.1.1 (C:) Acetylch 3.8 4.1E+02 0.03 21.4 4.3 36 135-171 85-120 (260)
6 d3cr5x1 a.39.1.2 (X:0-89) Calc 3.7 89 0.0065 22.9 -0.4 54 139-194 15-73 (90)
7 d1xk4c1 a.39.1.2 (C:4-86) Calc 3.7 90 0.0066 22.5 -0.3 54 139-194 16-75 (83)
8 d1n1ba1 a.102.4.1 (A:64-270) ( 3.5 2.9E+02 0.021 23.0 3.0 17 350-366 44-60 (207)
9 d5easa1 a.102.4.1 (A:24-220) 5 3.4 3.1E+02 0.023 22.7 3.0 17 350-366 45-61 (197)
10 d1j7qa_ a.39.1.5 (A:) Calcium 3.3 3E+02 0.022 19.2 2.3 39 345-384 29-67 (86)
No 1
>d1kf6d_ f.21.2.2 (D:) Fumarate reductase subunit FrdD {Escherichia coli [TaxId: 562]}
Probab=43.46 E-value=15 Score=29.19 Aligned_cols=45 Identities=24% Similarity=0.463 Sum_probs=31.4
Q ss_pred hhhhc----chhhhhhhccccccChHHHHHHHHHHHHhcccccchhhccccccccCCC
Q psy12870 91 GLGIT----AGAHRLWAHRSYKAKWPLRLILVIFNTIAFENHVYEWARDHRVHHKYSE 144 (417)
Q Consensus 91 ~lgit----~G~HRl~sHrSfka~~~lr~~L~~~gtla~qgs~~~Wv~~HR~HH~~sD 144 (417)
-+|+- ..|+|..+ |-.++.-+.++..+-.+ --|.+.||.||.--|
T Consensus 41 PlG~~~~~a~~y~~i~a---Fa~s~iG~l~ll~~i~l------plWh~~HRihHglHD 89 (119)
T d1kf6d_ 41 PLGLFPGDALSYERVLA---FAQSFIGRVFLFLMIVL------PLWCGLHRMHHAMHD 89 (119)
T ss_dssp GGTCSSTTTTSHHHHHH---HHTSHHHHHHHHHHHHH------HHHHHHHHHHHHHHH
T ss_pred hcccCCccccCHHHHHH---HHhhHHHHHHHHHHHHH------HHHHHHHHHHHHHhh
Confidence 35653 77888864 77788877776544433 348999999988655
No 2
>d1v54g_ f.23.2.1 (G:) Mitochondrial cytochrome c oxidase subunit VIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.46 E-value=1.9e+02 Score=21.07 Aligned_cols=19 Identities=26% Similarity=0.263 Sum_probs=15.3
Q ss_pred EehhhHHHHHHHHHHHHHH
Q psy12870 50 VWRNVILFAYLHLAALYGA 68 (417)
Q Consensus 50 ~W~~v~~~~~lhl~al~g~ 68 (417)
.|.++.+++.++.++|.++
T Consensus 15 lWkkis~~va~P~i~l~~~ 33 (84)
T d1v54g_ 15 TWRFLTFGLALPSVALCTL 33 (84)
T ss_dssp HHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5889888888888887665
No 3
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.40 E-value=1.4e+02 Score=18.29 Aligned_cols=8 Identities=38% Similarity=0.604 Sum_probs=5.7
Q ss_pred HHHHHHhh
Q psy12870 266 GVAVFALG 273 (417)
Q Consensus 266 ~laLlt~G 273 (417)
+++|+.||
T Consensus 15 Fv~lFiFG 22 (35)
T d2axti1 15 FVLLFVFG 22 (35)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 56777777
No 4
>d1k8ua_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), s100a6 [TaxId: 9606]}
Probab=4.00 E-value=80 Score=22.86 Aligned_cols=14 Identities=43% Similarity=0.693 Sum_probs=11.8
Q ss_pred ccCCCCCCCCCCcc
Q psy12870 140 HKYSETNADPHNAK 153 (417)
Q Consensus 140 H~~sDt~~DPhs~~ 153 (417)
|+|+|+++|+....
T Consensus 16 ~kya~~dg~~~~ls 29 (89)
T d1k8ua_ 16 HKYSGREGDKHTLS 29 (89)
T ss_dssp HHHHTSSSCTTEEE
T ss_pred HHHcccCCCCCeec
Confidence 78999999998753
No 5
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=3.80 E-value=4.1e+02 Score=21.36 Aligned_cols=36 Identities=11% Similarity=0.223 Sum_probs=5.5
Q ss_pred cccccccCCCCCCCCCCcccchHHHhhhhhhhccChh
Q psy12870 135 DHRVHHKYSETNADPHNAKRGFFFSHMGWLMCKKHPD 171 (417)
Q Consensus 135 ~HR~HH~~sDt~~DPhs~~rGf~~sH~GWl~~~~~p~ 171 (417)
....||+-.++..-|..- |-++...++++++.+.+.
T Consensus 85 Vl~~~~~~~~~~~~p~w~-R~~~l~~l~~~l~m~~~~ 120 (260)
T d1oedc_ 85 VLNFHFRTPSTHVLSTRV-KQIFLEKLPRILHMSRAD 120 (260)
T ss_dssp HHHHHHHC-----------------------------
T ss_pred heeeeecccccCccchHH-HHHHHHhccHHHcccccc
Confidence 467777766665566665 456667888887655443
No 6
>d3cr5x1 a.39.1.2 (X:0-89) Calcyclin (S100) {Cow (Bos taurus), s100b [TaxId: 9913]}
Probab=3.71 E-value=89 Score=22.87 Aligned_cols=54 Identities=24% Similarity=0.360 Sum_probs=28.0
Q ss_pred cccCCCCCCCCCCcccchHHHhh----hhhhh-ccChhhhhhcCCCCCCccccCceeeeec
Q psy12870 139 HHKYSETNADPHNAKRGFFFSHM----GWLMC-KKHPDVIEKGKGIDLADLEQDKLLMFQK 194 (417)
Q Consensus 139 HH~~sDt~~DPhs~~rGf~~sH~----GWl~~-~~~p~~~~~~~~~~~~Dl~~Dp~~~~~~ 194 (417)
=|+|+++++|++...++=+-.-+ +-.+. .+.|..... ....-|.-+|--+-|++
T Consensus 15 FhkYa~~~G~~~tLsk~Elk~Ll~~El~~~l~~~~d~~~~d~--~m~~LD~n~Dg~vdF~E 73 (90)
T d3cr5x1 15 FHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDK--VMETLDSDGDGECDFQE 73 (90)
T ss_dssp HHHHHTSSSSTTSBCHHHHHHHHHHHCTTTSCCCCSHHHHHH--HHHHHCTTSSSSBCHHH
T ss_pred HHHHhccCCCcCcCCHHHHHHHHHHHHHHHhcCCCCHHHHHH--HHHHhcCCCCCcCCHHH
Confidence 38899999999987544332222 22222 223332221 01124555676677666
No 7
>d1xk4c1 a.39.1.2 (C:4-86) Calcyclin (S100) {Human (Homo sapiens), s100a9 (mrp14) [TaxId: 9606]}
Probab=3.69 E-value=90 Score=22.55 Aligned_cols=54 Identities=28% Similarity=0.414 Sum_probs=28.5
Q ss_pred cccCCCCCCCCCCcccc----hHHHhhhhhhhc--cChhhhhhcCCCCCCccccCceeeeec
Q psy12870 139 HHKYSETNADPHNAKRG----FFFSHMGWLMCK--KHPDVIEKGKGIDLADLEQDKLLMFQK 194 (417)
Q Consensus 139 HH~~sDt~~DPhs~~rG----f~~sH~GWl~~~--~~p~~~~~~~~~~~~Dl~~Dp~~~~~~ 194 (417)
=|+|+.+++|++.-.++ +.-.-++-.+.. +.|..... ....-|.-+|--+-|++
T Consensus 16 FhkYa~~~G~~~tLsk~Elk~Ll~~El~~~l~~~~~d~~~vd~--~m~~LD~n~Dg~vdF~E 75 (83)
T d1xk4c1 16 FHQYSVKLGHPDTLNQGEFKELVRKDLQNFLKKENKNEKVIEH--IMEDLDTNADKQLSFEE 75 (83)
T ss_dssp HHHHHTTSSSTTSBCHHHHHHHHHHHTTTTTTTGGGCHHHHHH--HHHHHCTTCSSSBCHHH
T ss_pred HHHHhCcCCCcccCCHHHHHHHHHHHhHHHhcCCCCCHHHHHH--HHHHhcCCCCCcCcHHH
Confidence 38899999999998643 333333333322 23332211 01123445666666665
No 8
>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]}
Probab=3.54 E-value=2.9e+02 Score=23.03 Aligned_cols=17 Identities=18% Similarity=0.129 Sum_probs=15.1
Q ss_pred HHHHHHHhhhccccccc
Q psy12870 350 TGFIDFFAKLGWAYDLK 366 (417)
Q Consensus 350 ~~~I~~l~~lGla~~lk 366 (417)
-.+|+.+++||+.+..+
T Consensus 44 L~lID~lqRLGisyhFe 60 (207)
T d1n1ba1 44 LELIHDLKYLGLSDFFQ 60 (207)
T ss_dssp HHHHHHHHHTTCGGGGH
T ss_pred HHHHHHHHHcCcHHHHH
Confidence 37899999999999876
No 9
>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}
Probab=3.38 E-value=3.1e+02 Score=22.66 Aligned_cols=17 Identities=29% Similarity=0.702 Sum_probs=15.2
Q ss_pred HHHHHHHhhhccccccc
Q psy12870 350 TGFIDFFAKLGWAYDLK 366 (417)
Q Consensus 350 ~~~I~~l~~lGla~~lk 366 (417)
-.+|+.+++||+.+..+
T Consensus 45 L~lID~LqRLGi~yhFe 61 (197)
T d5easa1 45 LNLIDIIERLGISYHFE 61 (197)
T ss_dssp HHHHHHHHHTTCGGGGH
T ss_pred HHHHHHHHHcCcHHHHH
Confidence 47899999999999876
No 10
>d1j7qa_ a.39.1.5 (A:) Calcium vector protein {Amphioxus (Branchiostoma lanceolatum) [TaxId: 7740]}
Probab=3.32 E-value=3e+02 Score=19.17 Aligned_cols=39 Identities=21% Similarity=0.340 Sum_probs=25.0
Q ss_pred cccchHHHHHHHhhhccccccccCCHHHHHHHHhhcCCCC
Q psy12870 345 RANLTTGFIDFFAKLGWAYDLKTVSHQMIVNRIKRTGDGT 384 (417)
Q Consensus 345 ~~D~t~~~I~~l~~lGla~~lk~~~~~~i~~~~~~~~~~~ 384 (417)
.+-|..-..++|.+||-.|. |+.....+++..-..||..
T Consensus 29 niapvsdtmdmltklgqtyt-kreteaimkeargpkgdkk 67 (86)
T d1j7qa_ 29 NIAPVSDTMDMLTKLGQTYT-KRETEAIMKEARGPKGDKK 67 (86)
T ss_dssp SCBCHHHHHHHHHHTSCCCS-HHHHHHHHHHHHCSSCSSC
T ss_pred ccCCcchHHHHHHHhhhHHh-HHHHHHHHHHhcCCCCccc
Confidence 36677778999999999986 4434344444444455544
Done!