RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy12870
         (417 letters)



>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 34.2 bits (77), Expect = 0.029
 Identities = 8/21 (38%), Positives = 13/21 (61%), Gaps = 4/21 (19%)

Query: 13 LFEDDSADTLSPSVSRTDTVE 33
          L+ DDSA    P+++   T+E
Sbjct: 31 LYADDSA----PALAIKATME 47


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 34.8 bits (79), Expect = 0.051
 Identities = 38/214 (17%), Positives = 71/214 (33%), Gaps = 70/214 (32%)

Query: 163 W--LMCKKHPDVIEKGKGIDLADLEQDKLLMFQKKYYMIL------MPIFCFVLPTIVPA 214
           W  + C K   +IE      L  LE  +     +K +  L        I     PTI+ +
Sbjct: 347 WKHVNCDKLTTIIES----SLNVLEPAEY----RKMFDRLSVFPPSAHI-----PTILLS 393

Query: 215 LVWGETWRN--SWFVATMFRYTFTLNMTWLVNSAAHMWGQRPYDQYINPSENLGVAVFAL 272
           L+W +  ++     V  + +Y+       LV        ++P +  I             
Sbjct: 394 LIWFDVIKSDVMVVVNKLHKYS-------LVE-------KQPKESTI------------- 426

Query: 273 GEGWHNYHHVFPGLWPQCSVNSAAHMWGQRPYDQYINPS--ENLGVAVFALGEGWHNY-- 328
                +   ++  L  +     A H   +   D Y  P   ++  +    L + ++++  
Sbjct: 427 -----SIPSIYLELKVKLENEYALH---RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG 478

Query: 329 HHVFPWDYKTAELGNYRANLTTGFIDF-F--AKL 359
           HH+     K  E           F+DF F   K+
Sbjct: 479 HHL-----KNIEHPERMTLFRMVFLDFRFLEQKI 507



 Score = 33.7 bits (76), Expect = 0.13
 Identities = 24/138 (17%), Positives = 47/138 (34%), Gaps = 39/138 (28%)

Query: 74  SAKWPT----VIWAILLYQASGLGITAGAHRLWAHRSYKAKWPLRLILVIFNTIAFENHV 129
           SA  PT    +IW  ++     + +    H+     S   K P    + I  +I  E  V
Sbjct: 384 SAHIPTILLSLIWFDVIKSDVMV-VVNKLHK----YSLVEKQPKESTISI-PSIYLELKV 437

Query: 130 YEWARDHRVHHK-----YSETNADPHNAK-----RGFFFSHMGWLMCKKHPDVIEKGKGI 179
                +    H+     Y+       +         +F+SH+G      H          
Sbjct: 438 K--LENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH-----H---------- 480

Query: 180 DLADLEQ-DKLLMFQKKY 196
            L ++E  +++ +F+  +
Sbjct: 481 -LKNIEHPERMTLFRMVF 497


>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus
           HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A
           {Oceanicola granulosus} PDB: 3bvc_A
          Length = 216

 Score = 32.6 bits (74), Expect = 0.16
 Identities = 14/74 (18%), Positives = 25/74 (33%), Gaps = 2/74 (2%)

Query: 324 GWHNYHHVFPWDYKTAELGNYRANLTTGFIDFFAKLGWAYDLKTVSHQMI-VNRIKRTGD 382
           G+ +Y  +    ++     +   +L      F   L +  D K +  + I +N I   G 
Sbjct: 56  GYTSYASLTDLPWRFPIFADLVKSLDAHVAAFAEDLEFELDGKALRLEDIWIN-ILPEGG 114

Query: 383 GTHEHHHDGGVWGW 396
               H H   V   
Sbjct: 115 VHGSHIHPHSVISG 128


>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA,
          national project on protein structural and function
          analyses; 2.71A {Thermus thermophilus}
          Length = 369

 Score = 29.0 bits (66), Expect = 3.0
 Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 2/21 (9%)

Query: 44 EYKLQIVWRNVILFAYLHLAA 64
          EY    +   +ILF YLHLAA
Sbjct: 79 EYGF--LREGLILFTYLHLAA 97


>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD;
          2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2
          PDB: 1pjb_A* 1say_A
          Length = 361

 Score = 29.0 bits (66), Expect = 3.0
 Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 2/21 (9%)

Query: 44 EYKLQIVWRNVILFAYLHLAA 64
          EY L  + ++ +LF YLHLAA
Sbjct: 80 EYDL--MQKDQLLFTYLHLAA 98


>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI;
          2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A
          2vhz_A* 2vhv_A* 2voe_A 2voj_A*
          Length = 377

 Score = 29.0 bits (66), Expect = 3.4
 Identities = 10/21 (47%), Positives = 12/21 (57%), Gaps = 2/21 (9%)

Query: 44 EYKLQIVWRNVILFAYLHLAA 64
          EY    +    ILF +LHLAA
Sbjct: 81 EYGR--LRHGQILFTFLHLAA 99


>1ha0_A Protein (hemagglutinin precursor); glycoprotein, membrane-fusion
           precursor, virus/viral protein protein; HET: NAG BMA
           MAN; 2.80A {Influenza a virus} SCOP: b.19.1.2 h.3.1.1
          Length = 494

 Score = 27.7 bits (61), Expect = 8.2
 Identities = 13/57 (22%), Positives = 20/57 (35%), Gaps = 7/57 (12%)

Query: 113 LRLILVIFNTIAFENHVYEWARDHRVHHKYS-ETNADPHNAKRGFFFSHMGWLMCKK 168
           LR ++    T+ F    + W          +  +NA       GFF S + WL    
Sbjct: 100 LRSLVASSGTLEFITEGFTWT-----GVTQNGGSNACKRGPGSGFF-SRLNWLTKSG 150


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.323    0.137    0.463 

Gapped
Lambda     K      H
   0.267   0.0490    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,913,500
Number of extensions: 422100
Number of successful extensions: 1222
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1217
Number of HSP's successfully gapped: 22
Length of query: 417
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 321
Effective length of database: 4,021,377
Effective search space: 1290862017
Effective search space used: 1290862017
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.7 bits)