RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12870
         (417 letters)



>d1t9ba3 c.36.1.9 (A:461-687) Acetohydroxyacid synthase catalytic
           subunit {Baker's yeast (Saccharomyces cerevisiae)
           [TaxId: 4932]}
          Length = 227

 Score = 28.3 bits (62), Expect = 1.7
 Identities = 6/47 (12%), Positives = 11/47 (23%)

Query: 96  AGAHRLWAHRSYKAKWPLRLILVIFNTIAFENHVYEWARDHRVHHKY 142
            G H++WA + +  + P   I                          
Sbjct: 37  VGQHQMWAAQHWTWRNPHTFITSGGLGTMGYGLPAAIGAQVAKPESL 83


>d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow
           (Bos taurus) [TaxId: 9913]}
          Length = 158

 Score = 27.9 bits (61), Expect = 1.7
 Identities = 13/99 (13%), Positives = 32/99 (32%), Gaps = 5/99 (5%)

Query: 106 SYKAKWPLRLILVIFNTIAFENHVY-EWARDHRVHHKYSETNADPHNAKRGFFFSHMGWL 164
            +K K+    +++ F  + F      E         ++ + N +         FSH+ W+
Sbjct: 23  DFKGKY----LVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDSHFSHLAWI 78

Query: 165 MCKKHPDVIEKGKGIDLADLEQDKLLMFQKKYYMILMPI 203
              +    +       L+DL +     +        + +
Sbjct: 79  NTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLAL 117


>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]}
          Length = 231

 Score = 27.8 bits (61), Expect = 2.1
 Identities = 19/136 (13%), Positives = 37/136 (27%), Gaps = 9/136 (6%)

Query: 204 FCFVLPTIVPALVWGETWRNSWFVATMFRYTFTLNMTWLVNSAAHMWGQRPYDQ---YIN 260
              V+  ++  +V G     +  +  +       +      ++       P         
Sbjct: 78  AKEVVGYVIAQVVGG--IVAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSAL 135

Query: 261 PSENLGVAVFALGEGWHNYHHVFPGLWPQC--SVNSAAHMWGQRPYDQYINPSENLGVAV 318
             E +  A F L            G  P       +  H+      +  +NP+ +  VA+
Sbjct: 136 VVELVLSAGFLLVIHGATDKFAPAGFAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAI 195

Query: 319 FALGEGWHNYHHVFPW 334
           F  G         F W
Sbjct: 196 FQGGWALE--QLWFFW 209


>d2ez9a3 c.36.1.9 (A:366-593) Pyruvate oxidase {Lactobacillus
           plantarum [TaxId: 1590]}
          Length = 228

 Score = 26.4 bits (57), Expect = 6.4
 Identities = 11/78 (14%), Positives = 15/78 (19%), Gaps = 3/78 (3%)

Query: 96  AGAHRLWAHRSYKAKWPLRLILVIFNTIAFENHVYEWARDHRVHHKYSETNADPHNAKRG 155
            G   L A+R  K     R I                A       +      +       
Sbjct: 29  VGDINLNANRHLKLTPSNRHITSNLFATMGVGIPGAIAAKLNYPERQ---VFNLAGDGGA 85

Query: 156 FFFSHMGWLMCKKHPDVI 173
                      + H  VI
Sbjct: 86  SMTMQDLATQVQYHLPVI 103


>d1r85a_ c.1.8.3 (A:) Xylanase {Bacillus stearothermophilus, Xt6
           [TaxId: 1422]}
          Length = 371

 Score = 26.3 bits (57), Expect = 7.7
 Identities = 12/85 (14%), Positives = 25/85 (29%), Gaps = 1/85 (1%)

Query: 177 KGIDLADLEQDKLLMFQKKYYMILMPIFCFVLPTIVPALVWGETWRNSWFVATMFRYTFT 236
           +     D    +  + Q   Y  L  ++  +   I     WG    ++W + +     + 
Sbjct: 268 RAYPTYDAIPKQKFLDQAARYDRLFKLYEKLSDKISNVTFWGIADNHTW-LDSRADVYYD 326

Query: 237 LNMTWLVNSAAHMWGQRPYDQYINP 261
            N   +V+  A             P
Sbjct: 327 ANGNVVVDPNAPYAKVEKGKGKDAP 351


>d2djia3 c.36.1.9 (A:364-592) Pyruvate oxidase {Aerococcus viridans
           [TaxId: 1377]}
          Length = 229

 Score = 25.7 bits (55), Expect = 8.9
 Identities = 5/75 (6%), Positives = 14/75 (18%), Gaps = 4/75 (5%)

Query: 96  AGAHRLWAHRSYKAKWPLRLILVIFNTIAFENHVYEWARDHRVHHKYSETNADPHNAKRG 155
            G     + R                +  F              + Y +           
Sbjct: 26  VGNSTQTSIRHLHMTPKNMWR----TSPLFATMGIAIPGGLGAKNTYPDRQVWNIIGDGA 81

Query: 156 FFFSHMGWLMCKKHP 170
           F  ++   +   ++ 
Sbjct: 82  FSMTYPDVVTNVRYN 96


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.137    0.463 

Gapped
Lambda     K      H
   0.267   0.0446    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,711,518
Number of extensions: 82497
Number of successful extensions: 269
Number of sequences better than 10.0: 1
Number of HSP's gapped: 268
Number of HSP's successfully gapped: 46
Length of query: 417
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 329
Effective length of database: 1,199,356
Effective search space: 394588124
Effective search space used: 394588124
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.3 bits)