Query psy12875
Match_columns 308
No_of_seqs 242 out of 2076
Neff 8.0
Searched_HMMs 46136
Date Fri Aug 16 21:59:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12875.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12875hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01747 GATase1_Glutamyl_Hydro 100.0 4.6E-39 1E-43 291.9 20.3 225 21-308 1-228 (273)
2 KOG1559|consensus 100.0 6.7E-36 1.4E-40 256.6 14.1 231 17-308 51-283 (340)
3 PF07722 Peptidase_C26: Peptid 100.0 2.5E-35 5.5E-40 259.5 13.6 205 19-293 1-217 (217)
4 COG2071 Predicted glutamine am 100.0 1.3E-33 2.8E-38 244.9 13.1 210 16-299 1-224 (243)
5 PRK11366 puuD gamma-glutamyl-g 100.0 2.7E-31 5.8E-36 239.1 15.5 214 16-301 5-232 (254)
6 COG0512 PabA Anthranilate/para 100.0 1E-30 2.2E-35 220.3 11.1 127 152-301 48-181 (191)
7 PRK06895 putative anthranilate 99.9 4.1E-27 8.9E-32 203.5 16.2 173 38-301 7-179 (190)
8 cd01743 GATase1_Anthranilate_S 99.9 9.1E-27 2E-31 200.3 17.1 170 40-301 6-177 (184)
9 PRK08007 para-aminobenzoate sy 99.9 6.1E-27 1.3E-31 201.8 16.0 172 39-301 6-178 (187)
10 TIGR00566 trpG_papA glutamine 99.9 1.2E-26 2.7E-31 200.1 16.9 173 39-301 6-179 (188)
11 PRK08857 para-aminobenzoate sy 99.9 1.4E-26 3.1E-31 200.5 16.2 175 39-301 6-183 (193)
12 PRK07765 para-aminobenzoate sy 99.9 2.1E-26 4.5E-31 202.4 16.7 172 41-300 9-181 (214)
13 PRK07649 para-aminobenzoate/an 99.9 2.4E-26 5.2E-31 199.2 15.5 172 39-301 6-178 (195)
14 COG0118 HisH Glutamine amidotr 99.9 2.2E-26 4.7E-31 195.0 12.8 175 47-297 15-190 (204)
15 TIGR00888 guaA_Nterm GMP synth 99.9 6.5E-26 1.4E-30 195.7 15.6 166 42-300 8-173 (188)
16 PRK05670 anthranilate synthase 99.9 7.9E-26 1.7E-30 195.3 16.1 171 39-300 6-177 (189)
17 cd01745 GATase1_2 Subgroup of 99.9 5.3E-26 1.1E-30 196.4 14.6 163 21-297 1-176 (189)
18 CHL00101 trpG anthranilate syn 99.9 6.6E-26 1.4E-30 195.9 14.8 172 39-301 6-179 (190)
19 cd01742 GATase1_GMP_Synthase T 99.9 5.6E-26 1.2E-30 194.7 14.0 167 42-301 8-174 (181)
20 PRK06774 para-aminobenzoate sy 99.9 1E-25 2.2E-30 195.0 15.5 174 39-300 6-181 (191)
21 PRK05637 anthranilate synthase 99.9 9.1E-25 2E-29 191.0 16.4 184 39-301 8-195 (208)
22 cd01744 GATase1_CPSase Small c 99.9 3.2E-24 7E-29 183.5 18.1 156 48-298 11-167 (178)
23 PRK00758 GMP synthase subunit 99.9 7.6E-25 1.6E-29 188.4 13.3 163 41-301 8-171 (184)
24 PLN02335 anthranilate synthase 99.9 1.9E-24 4.1E-29 190.9 15.8 177 38-301 24-203 (222)
25 PF00117 GATase: Glutamine ami 99.9 7.9E-25 1.7E-29 189.2 12.3 178 40-301 5-182 (192)
26 PRK09065 glutamine amidotransf 99.9 2.5E-24 5.5E-29 192.1 14.3 187 21-296 4-190 (237)
27 PLN02347 GMP synthetase 99.9 4.7E-24 1E-28 209.3 17.0 174 41-301 19-192 (536)
28 PRK05665 amidotransferase; Pro 99.9 3.7E-24 8E-29 191.0 14.3 185 21-297 5-191 (240)
29 COG0518 GuaA GMP synthase - Gl 99.9 5.4E-24 1.2E-28 184.1 11.9 164 47-296 15-179 (198)
30 PRK12564 carbamoyl phosphate s 99.9 4.3E-23 9.3E-28 193.4 18.6 160 45-299 187-347 (360)
31 PRK00074 guaA GMP synthase; Re 99.9 3.4E-23 7.3E-28 203.3 15.9 166 43-301 14-179 (511)
32 CHL00188 hisH imidazole glycer 99.9 3.1E-23 6.7E-28 181.5 13.3 184 47-301 15-200 (210)
33 TIGR01368 CPSaseIIsmall carbam 99.9 1.4E-22 3.1E-27 189.6 18.6 159 45-299 183-343 (358)
34 PRK07567 glutamine amidotransf 99.9 9E-23 1.9E-27 182.5 15.0 170 47-297 18-195 (242)
35 PRK13566 anthranilate synthase 99.9 1.1E-22 2.3E-27 205.7 16.7 171 39-299 533-703 (720)
36 PRK06490 glutamine amidotransf 99.9 1.1E-22 2.4E-27 181.5 14.7 160 48-295 23-182 (239)
37 cd01741 GATase1_1 Subgroup of 99.9 1.1E-22 2.4E-27 175.3 13.2 165 46-293 13-180 (188)
38 TIGR01815 TrpE-clade3 anthrani 99.9 2.2E-22 4.9E-27 203.0 16.1 172 39-300 523-694 (717)
39 PRK07053 glutamine amidotransf 99.9 6E-22 1.3E-26 176.3 16.1 166 48-297 18-183 (234)
40 PRK13146 hisH imidazole glycer 99.9 1.4E-22 3.1E-27 177.5 11.0 180 47-300 15-197 (209)
41 PRK14607 bifunctional glutamin 99.9 3.6E-22 7.7E-27 197.2 14.8 172 39-301 6-179 (534)
42 PRK09522 bifunctional glutamin 99.9 3.2E-22 7E-27 196.5 13.4 172 38-301 7-180 (531)
43 cd01748 GATase1_IGP_Synthase T 99.9 2.7E-22 5.9E-27 174.4 11.3 175 47-300 12-190 (198)
44 PLN02889 oxo-acid-lyase/anthra 99.9 7.7E-22 1.7E-26 201.5 16.3 180 38-301 87-325 (918)
45 cd01746 GATase1_CTP_Synthase T 99.9 5.6E-22 1.2E-26 176.3 13.4 198 48-298 22-224 (235)
46 PRK12838 carbamoyl phosphate s 99.9 2.9E-21 6.2E-26 180.6 18.7 158 45-298 177-336 (354)
47 PRK13525 glutamine amidotransf 99.9 1.6E-21 3.4E-26 168.4 15.5 162 48-297 15-176 (189)
48 PRK13170 hisH imidazole glycer 99.9 1.8E-21 4E-26 168.9 14.3 173 47-301 14-187 (196)
49 PRK08250 glutamine amidotransf 99.9 1.4E-21 3E-26 174.2 13.7 167 48-296 16-184 (235)
50 PLN02771 carbamoyl-phosphate s 99.9 3.6E-21 7.8E-26 181.7 16.8 159 45-299 250-409 (415)
51 PRK13181 hisH imidazole glycer 99.9 1.9E-21 4.2E-26 169.3 12.4 170 47-295 13-185 (199)
52 CHL00197 carA carbamoyl-phosph 99.9 6.6E-21 1.4E-25 179.3 16.8 158 46-300 203-362 (382)
53 PRK14004 hisH imidazole glycer 99.9 2.9E-21 6.2E-26 169.1 12.8 186 47-301 13-200 (210)
54 PRK13527 glutamine amidotransf 99.9 8.8E-21 1.9E-25 165.2 13.4 168 47-297 17-186 (200)
55 PRK06186 hypothetical protein; 99.9 3.4E-21 7.3E-26 169.0 10.8 192 41-298 14-212 (229)
56 KOG0026|consensus 99.9 1.7E-21 3.6E-26 158.8 8.0 129 152-301 66-204 (223)
57 PRK13152 hisH imidazole glycer 99.8 1.4E-20 3.1E-25 164.0 14.4 173 47-296 13-188 (201)
58 COG0505 CarA Carbamoylphosphat 99.8 2.9E-20 6.3E-25 169.4 14.7 161 45-300 189-350 (368)
59 PRK13143 hisH imidazole glycer 99.8 5.6E-20 1.2E-24 160.2 15.3 173 43-296 11-184 (200)
60 PRK13141 hisH imidazole glycer 99.8 3.1E-20 6.8E-25 162.3 13.5 173 47-296 13-188 (205)
61 TIGR01855 IMP_synth_hisH imida 99.8 2.2E-20 4.8E-25 162.2 11.2 170 47-296 12-183 (196)
62 TIGR01823 PabB-fungal aminodeo 99.8 1.2E-19 2.7E-24 184.5 17.6 177 38-300 11-192 (742)
63 PRK13142 hisH imidazole glycer 99.8 6.8E-20 1.5E-24 157.5 13.3 161 47-296 13-174 (192)
64 TIGR00337 PyrG CTP synthase. C 99.8 9.8E-20 2.1E-24 176.0 15.6 218 17-299 288-513 (525)
65 cd01749 GATase1_PB Glutamine A 99.8 1.6E-19 3.5E-24 155.1 11.3 157 50-296 14-174 (183)
66 PRK05380 pyrG CTP synthetase; 99.8 3.9E-19 8.4E-24 172.0 14.3 199 41-299 301-513 (533)
67 PLN02327 CTP synthase 99.8 5.1E-18 1.1E-22 164.5 14.8 203 41-299 310-533 (557)
68 PLN02617 imidazole glycerol ph 99.8 1.1E-17 2.5E-22 164.2 17.2 174 47-296 20-196 (538)
69 TIGR03800 PLP_synth_Pdx2 pyrid 99.8 7.1E-18 1.5E-22 144.9 13.4 74 48-136 13-88 (184)
70 COG0504 PyrG CTP synthase (UTP 99.8 4.1E-18 8.9E-23 160.7 11.2 201 41-301 301-515 (533)
71 PLN02832 glutamine amidotransf 99.7 2.4E-17 5.2E-22 146.7 14.3 198 20-297 3-203 (248)
72 KOG3179|consensus 99.7 3.6E-17 7.9E-22 137.8 12.7 173 41-295 23-195 (245)
73 TIGR01737 FGAM_synth_I phospho 99.7 3.9E-17 8.5E-22 144.9 11.8 87 46-140 14-102 (227)
74 KOG1622|consensus 99.7 1.7E-17 3.7E-22 154.2 6.6 165 48-302 31-195 (552)
75 KOG1224|consensus 99.7 5E-17 1.1E-21 153.6 8.6 131 152-301 67-207 (767)
76 KOG2387|consensus 99.6 2.9E-15 6.3E-20 139.2 11.7 202 41-302 311-537 (585)
77 PRK05368 homoserine O-succinyl 99.6 4.7E-15 1E-19 135.6 12.8 142 77-297 98-241 (302)
78 PRK03619 phosphoribosylformylg 99.6 1.7E-14 3.7E-19 127.3 12.4 80 46-133 14-95 (219)
79 KOG0623|consensus 99.5 2.1E-14 4.5E-19 129.8 8.5 180 47-297 15-195 (541)
80 KOG0370|consensus 99.5 1.1E-13 2.5E-18 138.1 13.5 157 45-299 182-339 (1435)
81 COG0047 PurL Phosphoribosylfor 99.4 5.5E-12 1.2E-16 109.1 16.5 91 17-133 1-97 (231)
82 PRK13526 glutamine amidotransf 99.4 3.1E-12 6.8E-17 108.4 14.0 85 18-133 2-88 (179)
83 PRK01175 phosphoribosylformylg 99.4 3.2E-12 6.9E-17 115.4 13.4 100 16-133 1-105 (261)
84 cd01740 GATase1_FGAR_AT Type 1 99.3 7.9E-12 1.7E-16 111.8 9.4 90 46-139 12-105 (238)
85 COG0311 PDX2 Predicted glutami 99.3 7.8E-11 1.7E-15 98.7 13.4 75 48-136 14-91 (194)
86 PF01174 SNO: SNO glutamine am 99.3 2.6E-11 5.7E-16 102.5 10.5 73 48-133 10-84 (188)
87 COG0512 PabA Anthranilate/para 99.2 1.3E-10 2.7E-15 98.7 9.0 89 38-141 7-97 (191)
88 PF13507 GATase_5: CobB/CobQ-l 99.1 6.1E-10 1.3E-14 100.4 11.3 99 18-133 1-106 (259)
89 PRK08007 para-aminobenzoate sy 98.9 1.8E-09 4E-14 93.0 4.8 48 151-198 45-96 (187)
90 cd03130 GATase1_CobB Type 1 gl 98.8 9.4E-09 2E-13 89.4 8.1 82 44-134 11-92 (198)
91 TIGR01857 FGAM-synthase phosph 98.8 3.9E-08 8.4E-13 104.5 14.0 101 17-133 976-1090(1239)
92 TIGR01735 FGAM_synt phosphorib 98.8 3E-08 6.6E-13 106.6 12.7 96 16-131 1053-1158(1310)
93 PRK05297 phosphoribosylformylg 98.8 3.9E-08 8.4E-13 106.0 13.1 97 17-133 1034-1140(1290)
94 PLN03206 phosphoribosylformylg 98.8 6E-08 1.3E-12 103.8 13.3 98 16-133 1035-1142(1307)
95 PRK07649 para-aminobenzoate/an 98.8 6.8E-09 1.5E-13 90.0 5.1 48 151-198 45-96 (195)
96 PRK06774 para-aminobenzoate sy 98.8 7.4E-09 1.6E-13 89.5 4.6 48 151-198 45-96 (191)
97 COG0505 CarA Carbamoylphosphat 98.8 7.9E-09 1.7E-13 95.0 4.8 48 151-198 222-274 (368)
98 KOG3210|consensus 98.7 6.5E-08 1.4E-12 79.8 9.1 59 75-139 53-113 (226)
99 TIGR00566 trpG_papA glutamine 98.7 1E-08 2.2E-13 88.4 4.6 47 152-198 46-96 (188)
100 cd01750 GATase1_CobQ Type 1 gl 98.7 8.3E-08 1.8E-12 83.2 9.5 73 48-133 14-88 (194)
101 CHL00101 trpG anthranilate syn 98.7 3E-08 6.6E-13 85.6 5.2 48 151-198 45-96 (190)
102 PRK08857 para-aminobenzoate sy 98.7 2.9E-08 6.2E-13 86.0 5.0 47 152-198 46-96 (193)
103 PLN02335 anthranilate synthase 98.6 3.3E-08 7.2E-13 87.5 5.0 47 152-198 65-115 (222)
104 PHA03366 FGAM-synthase; Provis 98.6 5.5E-07 1.2E-11 97.1 15.1 101 16-133 1026-1133(1304)
105 PLN02771 carbamoyl-phosphate s 98.6 2.8E-08 6E-13 94.6 4.6 81 118-198 241-334 (415)
106 PRK06895 putative anthranilate 98.6 3.6E-08 7.8E-13 85.1 4.6 48 151-198 45-96 (190)
107 PRK05670 anthranilate synthase 98.6 4.2E-08 9.1E-13 84.6 4.6 48 151-198 45-96 (189)
108 TIGR01739 tegu_FGAM_synt herpe 98.5 1.9E-06 4E-11 92.7 15.0 100 16-133 927-1034(1202)
109 PRK07765 para-aminobenzoate sy 98.5 1.8E-07 3.8E-12 82.4 4.6 48 151-198 48-100 (214)
110 PRK09522 bifunctional glutamin 98.4 2.3E-07 4.9E-12 92.0 4.3 47 152-198 51-101 (531)
111 PRK05637 anthranilate synthase 98.4 2.9E-07 6.2E-12 80.7 4.4 47 151-197 46-96 (208)
112 TIGR01368 CPSaseIIsmall carbam 98.4 3.5E-07 7.6E-12 86.2 4.8 48 151-198 216-267 (358)
113 PLN02889 oxo-acid-lyase/anthra 98.4 3.8E-07 8.2E-12 94.5 5.3 47 151-198 133-186 (918)
114 PRK12838 carbamoyl phosphate s 98.4 3.9E-07 8.5E-12 85.8 4.8 48 151-198 210-261 (354)
115 cd01743 GATase1_Anthranilate_S 98.3 4.6E-07 9.9E-12 77.8 4.6 47 152-198 45-95 (184)
116 PF00117 GATase: Glutamine ami 98.3 3E-07 6.6E-12 79.1 2.6 48 151-198 44-96 (192)
117 CHL00197 carA carbamoyl-phosph 98.3 7.3E-07 1.6E-11 84.6 4.5 48 151-198 235-287 (382)
118 PRK06278 cobyrinic acid a,c-di 98.3 1.7E-06 3.6E-11 84.5 7.1 73 49-136 11-84 (476)
119 cd03131 GATase1_HTS Type 1 glu 98.3 1.4E-06 3.1E-11 74.0 5.6 58 76-139 60-119 (175)
120 PRK12564 carbamoyl phosphate s 98.2 1E-06 2.2E-11 83.2 4.7 48 151-198 220-272 (360)
121 cd03146 GAT1_Peptidase_E Type 98.2 3.9E-06 8.5E-11 73.7 8.1 98 17-133 30-130 (212)
122 PRK14607 bifunctional glutamin 98.2 1.1E-06 2.4E-11 87.5 4.8 48 151-198 46-97 (534)
123 PRK05665 amidotransferase; Pro 98.2 1.5E-06 3.3E-11 77.8 5.1 48 151-198 59-115 (240)
124 PRK01077 cobyrinic acid a,c-di 98.2 5E-06 1.1E-10 81.2 9.2 75 47-133 261-338 (451)
125 PRK09065 glutamine amidotransf 98.2 2E-06 4.2E-11 77.0 5.1 48 151-198 56-112 (237)
126 TIGR00379 cobB cobyrinic acid 98.2 6.2E-06 1.3E-10 80.5 8.4 75 47-133 260-337 (449)
127 cd01744 GATase1_CPSase Small c 98.2 2.2E-06 4.7E-11 73.3 4.5 48 151-198 41-93 (178)
128 TIGR01815 TrpE-clade3 anthrani 98.1 2.8E-06 6.1E-11 86.8 4.4 48 151-198 561-612 (717)
129 PF04204 HTS: Homoserine O-suc 98.1 1.4E-05 3E-10 73.1 8.4 140 77-297 97-240 (298)
130 PRK00784 cobyric acid synthase 98.1 5.5E-06 1.2E-10 81.7 6.3 72 49-133 267-341 (488)
131 TIGR01823 PabB-fungal aminodeo 98.1 3.5E-06 7.5E-11 86.7 4.8 48 151-198 55-110 (742)
132 TIGR00888 guaA_Nterm GMP synth 98.1 5.6E-06 1.2E-10 71.3 5.3 47 152-198 44-94 (188)
133 KOG1224|consensus 98.1 9.5E-06 2.1E-10 78.1 7.2 92 38-140 20-117 (767)
134 KOG0026|consensus 98.1 2E-05 4.4E-10 65.1 7.9 88 39-141 25-115 (223)
135 PRK07567 glutamine amidotransf 98.0 5.2E-06 1.1E-10 74.5 4.3 26 172-197 91-116 (242)
136 PRK13566 anthranilate synthase 98.0 5.5E-06 1.2E-10 84.8 4.4 83 116-198 525-622 (720)
137 cd01653 GATase1 Type 1 glutami 98.0 3.1E-05 6.8E-10 58.4 7.4 80 47-132 15-94 (115)
138 KOG3179|consensus 97.9 6.5E-06 1.4E-10 70.2 2.8 29 172-200 91-119 (245)
139 PRK13896 cobyrinic acid a,c-di 97.9 3.3E-05 7.2E-10 74.7 7.7 78 43-133 245-324 (433)
140 PLN02347 GMP synthetase 97.9 1.6E-05 3.4E-10 79.0 5.3 48 151-198 55-110 (536)
141 PRK11780 isoprenoid biosynthes 97.9 5E-05 1.1E-09 66.9 8.0 84 49-135 25-145 (217)
142 TIGR01001 metA homoserine O-su 97.8 0.00012 2.6E-09 66.6 9.9 142 76-297 97-240 (300)
143 PF07685 GATase_3: CobB/CobQ-l 97.8 1.2E-05 2.6E-10 67.3 3.2 52 75-133 4-58 (158)
144 cd01742 GATase1_GMP_Synthase T 97.8 1.4E-05 2.9E-10 68.3 3.5 27 172-198 68-94 (181)
145 KOG0370|consensus 97.8 1.8E-05 4E-10 80.5 4.8 82 117-198 172-264 (1435)
146 cd03128 GAT_1 Type 1 glutamine 97.8 8.3E-05 1.8E-09 53.5 6.9 77 48-130 16-92 (92)
147 PRK11366 puuD gamma-glutamyl-g 97.8 1.7E-05 3.8E-10 71.6 3.5 34 165-198 97-131 (254)
148 cd01746 GATase1_CTP_Synthase T 97.7 3.2E-05 6.9E-10 69.0 3.9 48 152-199 58-109 (235)
149 PRK07053 glutamine amidotransf 97.7 4.7E-05 1E-09 67.9 4.4 47 152-198 50-107 (234)
150 cd03133 GATase1_ES1 Type 1 glu 97.7 0.00017 3.8E-09 63.3 7.7 86 48-136 21-143 (213)
151 PRK13170 hisH imidazole glycer 97.6 6.3E-05 1.4E-09 65.3 3.9 40 153-193 42-89 (196)
152 PRK05282 (alpha)-aspartyl dipe 97.5 0.00061 1.3E-08 60.7 9.0 98 17-133 30-129 (233)
153 TIGR00313 cobQ cobyric acid sy 97.5 0.0001 2.2E-09 72.5 4.2 52 76-133 282-335 (475)
154 cd03147 GATase1_Ydr533c_like T 97.5 0.00028 6.1E-09 62.8 6.6 52 76-133 92-143 (231)
155 PRK06490 glutamine amidotransf 97.5 0.00013 2.8E-09 65.3 4.5 49 151-199 54-111 (239)
156 CHL00188 hisH imidazole glycer 97.5 0.00014 3E-09 63.8 4.4 42 153-194 42-94 (210)
157 cd03148 GATase1_EcHsp31_like T 97.4 0.00052 1.1E-08 61.1 7.7 51 77-133 95-145 (232)
158 PRK04155 chaperone protein Hch 97.4 0.00061 1.3E-08 62.6 8.1 78 50-133 83-196 (287)
159 KOG1907|consensus 97.4 0.0028 6.1E-08 64.8 13.0 99 17-133 1057-1163(1320)
160 PRK00074 guaA GMP synthase; Re 97.4 0.00014 3E-09 72.2 3.5 27 172-198 73-99 (511)
161 PRK13152 hisH imidazole glycer 97.3 0.00017 3.6E-09 62.8 3.5 38 152-190 40-89 (201)
162 COG2071 Predicted glutamine am 97.3 0.00023 4.9E-09 62.8 3.8 34 164-197 96-130 (243)
163 TIGR00337 PyrG CTP synthase. C 97.3 0.00024 5.1E-09 69.9 4.2 49 151-199 345-397 (525)
164 KOG1622|consensus 97.3 0.00022 4.8E-09 67.6 3.7 46 151-198 61-112 (552)
165 PRK00758 GMP synthase subunit 97.3 0.00023 4.9E-09 61.0 3.5 45 152-198 44-91 (184)
166 PRK13142 hisH imidazole glycer 97.2 0.00028 6.1E-09 60.9 3.8 38 153-191 40-87 (192)
167 cd01745 GATase1_2 Subgroup of 97.2 0.00037 8E-09 60.1 4.4 29 166-194 91-120 (189)
168 PRK14004 hisH imidazole glycer 97.2 0.00042 9.1E-09 60.8 4.5 40 153-192 40-90 (210)
169 cd03144 GATase1_ScBLP_like Typ 97.2 0.00029 6.2E-09 55.6 3.1 48 77-130 43-90 (114)
170 PF07722 Peptidase_C26: Peptid 97.1 0.00027 5.8E-09 62.4 2.7 26 172-197 104-129 (217)
171 PRK05380 pyrG CTP synthetase; 97.1 0.0005 1.1E-08 67.6 4.5 46 151-196 345-394 (533)
172 TIGR01382 PfpI intracellular p 97.0 0.002 4.4E-08 53.8 7.1 79 48-133 17-108 (166)
173 cd03129 GAT1_Peptidase_E_like 97.0 0.0054 1.2E-07 53.6 10.0 99 17-133 28-130 (210)
174 COG0518 GuaA GMP synthase - Gl 97.0 0.00046 9.9E-09 60.0 2.3 48 151-198 47-103 (198)
175 cd03134 GATase1_PfpI_like A ty 96.9 0.0037 8E-08 52.2 7.6 79 48-133 17-110 (165)
176 COG0693 ThiJ Putative intracel 96.9 0.0012 2.5E-08 56.6 4.1 79 49-133 21-115 (188)
177 PRK13181 hisH imidazole glycer 96.8 0.0012 2.6E-08 57.3 4.1 40 153-192 40-90 (199)
178 PRK13527 glutamine amidotransf 96.8 0.00094 2E-08 58.0 3.1 29 166-194 68-97 (200)
179 PRK11574 oxidative-stress-resi 96.8 0.014 3E-07 50.3 10.4 98 17-132 1-114 (196)
180 PF01965 DJ-1_PfpI: DJ-1/PfpI 96.8 0.0013 2.9E-08 54.1 3.7 52 76-133 35-87 (147)
181 cd03169 GATase1_PfpI_1 Type 1 96.8 0.0019 4.2E-08 54.9 4.8 49 78-133 76-124 (180)
182 PLN02327 CTP synthase 96.7 0.0011 2.5E-08 65.3 3.5 48 151-198 364-415 (557)
183 cd03141 GATase1_Hsp31_like Typ 96.7 0.0042 9.1E-08 54.9 6.4 53 76-134 88-140 (221)
184 PRK13525 glutamine amidotransf 96.7 0.0014 3.1E-08 56.5 3.1 28 167-194 64-92 (189)
185 cd01747 GATase1_Glutamyl_Hydro 96.6 0.0013 2.7E-08 60.1 2.9 24 174-197 92-115 (273)
186 PRK08250 glutamine amidotransf 96.6 0.0019 4.2E-08 57.6 3.9 32 167-198 76-108 (235)
187 cd03132 GATase1_catalase Type 96.6 0.0058 1.2E-07 49.8 6.1 80 48-133 19-111 (142)
188 cd01749 GATase1_PB Glutamine A 96.6 0.0018 4E-08 55.5 3.1 29 166-194 60-89 (183)
189 COG1797 CobB Cobyrinic acid a, 96.5 0.0097 2.1E-07 57.0 7.5 79 44-133 258-339 (451)
190 cd03137 GATase1_AraC_1 AraC tr 96.4 0.0095 2.1E-07 50.7 6.9 52 75-133 61-112 (187)
191 cd01748 GATase1_IGP_Synthase T 96.4 0.0026 5.6E-08 55.1 3.1 38 154-191 40-88 (198)
192 COG1492 CobQ Cobyric acid synt 96.4 0.0063 1.4E-07 59.1 6.0 52 76-133 288-341 (486)
193 PRK06186 hypothetical protein; 96.4 0.0033 7.1E-08 55.7 3.7 45 152-196 56-104 (229)
194 COG0118 HisH Glutamine amidotr 96.3 0.0028 6.1E-08 54.6 2.9 38 153-190 42-90 (204)
195 TIGR01855 IMP_synth_hisH imida 96.3 0.0039 8.5E-08 54.0 3.6 20 172-191 69-88 (196)
196 COG1897 MetA Homoserine trans- 96.2 0.016 3.5E-07 51.5 7.1 67 217-297 175-241 (307)
197 cd01741 GATase1_1 Subgroup of 96.2 0.0052 1.1E-07 52.6 4.1 48 152-199 49-106 (188)
198 COG3442 Predicted glutamine am 96.2 0.0098 2.1E-07 51.8 5.6 72 50-133 27-103 (250)
199 TIGR02069 cyanophycinase cyano 95.9 0.064 1.4E-06 48.3 9.5 99 17-133 27-132 (250)
200 cd03140 GATase1_PfpI_3 Type 1 95.9 0.011 2.4E-07 49.8 4.3 49 77-133 59-107 (170)
201 TIGR03800 PLP_synth_Pdx2 pyrid 95.9 0.007 1.5E-07 52.0 3.1 100 167-296 62-174 (184)
202 PRK11249 katE hydroperoxidase 95.7 0.034 7.3E-07 57.3 7.8 99 17-133 596-707 (752)
203 PRK13141 hisH imidazole glycer 95.7 0.0071 1.5E-07 52.7 2.5 26 166-191 63-89 (205)
204 PF03575 Peptidase_S51: Peptid 95.7 0.019 4E-07 47.7 4.9 77 47-130 3-82 (154)
205 cd03135 GATase1_DJ-1 Type 1 gl 95.7 0.019 4E-07 47.6 4.9 80 48-133 16-109 (163)
206 PRK13146 hisH imidazole glycer 95.5 0.0074 1.6E-07 52.9 2.0 19 172-190 75-93 (209)
207 PRK13143 hisH imidazole glycer 95.5 0.012 2.5E-07 51.2 3.0 20 172-191 69-88 (200)
208 PLN02617 imidazole glycerol ph 95.5 0.015 3.1E-07 58.1 4.0 39 153-191 47-96 (538)
209 cd03145 GAT1_cyanophycinase Ty 95.4 0.095 2.1E-06 46.1 8.7 98 18-133 29-133 (217)
210 cd03138 GATase1_AraC_2 AraC tr 95.4 0.032 6.9E-07 47.9 5.6 54 76-133 67-120 (195)
211 cd03139 GATase1_PfpI_2 Type 1 95.4 0.039 8.4E-07 46.7 6.0 78 48-133 16-110 (183)
212 PRK05368 homoserine O-succinyl 95.3 0.012 2.6E-07 54.4 2.6 22 173-194 134-155 (302)
213 TIGR01383 not_thiJ DJ-1 family 95.1 0.03 6.5E-07 47.2 4.5 52 76-133 61-112 (179)
214 PLN02832 glutamine amidotransf 94.9 0.021 4.5E-07 51.3 3.0 20 172-191 70-89 (248)
215 TIGR01737 FGAM_synth_I phospho 94.7 0.03 6.5E-07 49.7 3.4 127 166-300 69-211 (227)
216 KOG2764|consensus 94.3 0.19 4E-06 44.3 7.3 72 50-127 25-110 (247)
217 COG0504 PyrG CTP synthase (UTP 94.0 0.047 1E-06 53.0 3.4 47 152-198 346-396 (533)
218 cd01750 GATase1_CobQ Type 1 gl 93.9 0.044 9.4E-07 47.4 2.7 21 172-192 70-90 (194)
219 cd03136 GATase1_AraC_ArgR_like 93.8 0.1 2.2E-06 44.3 4.8 50 76-133 62-111 (185)
220 PRK01175 phosphoribosylformylg 93.6 0.05 1.1E-06 49.3 2.7 32 268-299 201-232 (261)
221 PF13278 DUF4066: Putative ami 93.1 0.18 3.8E-06 42.1 5.0 51 76-133 59-109 (166)
222 PRK13526 glutamine amidotransf 92.9 0.083 1.8E-06 45.1 2.7 99 166-296 64-168 (179)
223 cd03130 GATase1_CobB Type 1 gl 92.8 0.089 1.9E-06 45.6 2.9 20 172-191 73-92 (198)
224 PRK09393 ftrA transcriptional 92.6 0.33 7E-06 45.2 6.6 51 76-134 73-123 (322)
225 COG3340 PepE Peptidase E [Amin 92.5 0.37 8E-06 42.1 6.1 80 42-128 48-129 (224)
226 PRK06278 cobyrinic acid a,c-di 91.5 0.1 2.2E-06 51.4 1.8 18 174-191 65-82 (476)
227 cd01740 GATase1_FGAR_AT Type 1 90.8 0.17 3.7E-06 45.2 2.5 123 166-300 73-220 (238)
228 KOG2387|consensus 90.3 0.13 2.7E-06 49.4 1.2 25 172-196 390-414 (585)
229 PF09825 BPL_N: Biotin-protein 89.5 0.94 2E-05 43.1 6.3 48 75-129 46-94 (367)
230 COG0047 PurL Phosphoribosylfor 88.0 0.39 8.5E-06 42.3 2.5 36 267-302 181-216 (231)
231 PF07685 GATase_3: CobB/CobQ-l 87.5 0.57 1.2E-05 39.0 3.2 27 166-192 33-60 (158)
232 COG1492 CobQ Cobyric acid synt 86.6 0.76 1.6E-05 45.0 3.9 40 152-191 292-342 (486)
233 TIGR00313 cobQ cobyric acid sy 84.0 0.82 1.8E-05 45.1 2.8 20 172-191 317-336 (475)
234 PRK00784 cobyric acid synthase 83.8 0.85 1.8E-05 45.2 2.9 20 172-191 323-342 (488)
235 TIGR02667 moaB_proteo molybden 83.6 17 0.00037 30.3 10.3 68 17-93 3-77 (163)
236 COG0303 MoeA Molybdopterin bio 82.6 11 0.00025 36.3 9.9 79 11-89 169-253 (404)
237 PRK03372 ppnK inorganic polyph 82.3 5.6 0.00012 37.0 7.4 83 20-127 7-106 (306)
238 PRK03619 phosphoribosylformylg 81.4 1.1 2.4E-05 39.4 2.4 128 165-298 69-202 (219)
239 PRK01215 competence damage-ind 77.8 10 0.00022 34.5 7.4 66 16-88 1-72 (264)
240 TIGR00177 molyb_syn molybdenum 76.0 14 0.00031 30.0 7.3 43 47-89 30-77 (144)
241 PRK01911 ppnK inorganic polyph 75.8 11 0.00023 34.9 7.1 68 45-127 17-98 (292)
242 TIGR00379 cobB cobyrinic acid 73.7 3 6.5E-05 40.9 3.1 20 172-191 319-338 (449)
243 PRK14690 molybdopterin biosynt 73.5 22 0.00047 34.6 8.9 79 11-89 186-270 (419)
244 cd03522 MoeA_like MoeA_like. T 71.8 29 0.00062 32.4 9.0 75 11-93 152-233 (312)
245 PRK03378 ppnK inorganic polyph 71.7 15 0.00033 33.8 7.2 84 19-127 6-97 (292)
246 PRK10680 molybdopterin biosynt 71.7 23 0.0005 34.3 8.7 81 12-93 171-257 (411)
247 cd03144 GATase1_ScBLP_like Typ 70.7 2.4 5.2E-05 33.4 1.4 16 172-187 75-90 (114)
248 KOG0623|consensus 70.5 2.8 6.1E-05 39.2 2.0 19 171-189 71-89 (541)
249 PRK04539 ppnK inorganic polyph 70.3 23 0.0005 32.7 8.0 83 20-127 7-102 (296)
250 PRK02649 ppnK inorganic polyph 70.3 18 0.00039 33.6 7.3 83 20-127 3-102 (305)
251 PRK14497 putative molybdopteri 69.5 31 0.00066 34.8 9.1 78 11-89 172-256 (546)
252 PF03698 UPF0180: Uncharacteri 68.8 11 0.00025 27.7 4.5 37 48-91 12-48 (80)
253 COG4242 CphB Cyanophycinase an 67.9 19 0.0004 32.4 6.4 97 18-132 52-155 (293)
254 PRK01077 cobyrinic acid a,c-di 67.7 4.8 0.0001 39.4 3.1 26 166-191 313-339 (451)
255 PF13507 GATase_5: CobB/CobQ-l 67.4 4.2 9E-05 36.9 2.4 28 274-301 208-235 (259)
256 cd00887 MoeA MoeA family. Memb 67.2 30 0.00065 33.2 8.4 79 11-89 161-245 (394)
257 PRK13896 cobyrinic acid a,c-di 66.3 4 8.7E-05 39.8 2.2 20 172-191 306-325 (433)
258 cd00758 MoCF_BD MoCF_BD: molyb 65.8 31 0.00067 27.5 7.0 42 47-88 22-68 (133)
259 COG4090 Uncharacterized protei 64.7 11 0.00023 30.5 3.9 54 75-139 82-135 (154)
260 PF09822 ABC_transp_aux: ABC-t 64.0 58 0.0013 29.2 9.3 74 9-91 137-210 (271)
261 PRK14491 putative bifunctional 63.7 38 0.00082 34.6 8.7 82 11-93 360-447 (597)
262 PRK14498 putative molybdopteri 63.7 35 0.00076 34.9 8.6 82 11-93 179-266 (633)
263 PRK11104 hemG protoporphyrinog 62.6 16 0.00035 30.9 5.0 74 43-127 15-88 (177)
264 PRK10355 xylF D-xylose transpo 61.6 91 0.002 28.8 10.4 65 14-87 21-90 (330)
265 COG3155 ElbB Uncharacterized p 61.0 16 0.00035 30.6 4.4 61 76-139 83-149 (217)
266 PRK03094 hypothetical protein; 60.7 20 0.00044 26.3 4.5 36 48-90 12-47 (80)
267 cd00886 MogA_MoaB MogA_MoaB fa 60.2 56 0.0012 26.7 7.8 45 48-93 24-75 (152)
268 PRK02231 ppnK inorganic polyph 60.0 33 0.00071 31.3 6.8 65 47-126 3-75 (272)
269 COG4977 Transcriptional regula 58.4 29 0.00064 32.5 6.3 49 78-133 76-124 (328)
270 PF09075 STb_secrete: Heat-sta 58.2 2.9 6.3E-05 26.1 -0.2 16 177-192 32-47 (48)
271 cd06292 PBP1_LacI_like_10 Liga 58.0 1E+02 0.0023 26.8 9.8 43 45-87 17-64 (273)
272 COG4285 Uncharacterized conser 57.6 16 0.00035 32.1 4.1 73 76-161 47-123 (253)
273 COG3442 Predicted glutamine am 57.4 5.6 0.00012 35.0 1.3 21 171-191 84-104 (250)
274 COG4635 HemG Flavodoxin [Energ 56.2 44 0.00095 28.1 6.2 74 44-127 16-89 (175)
275 PLN02929 NADH kinase 56.0 34 0.00073 31.7 6.2 61 47-127 37-97 (301)
276 PRK02155 ppnK NAD(+)/NADH kina 55.7 51 0.0011 30.3 7.4 83 20-127 7-97 (291)
277 COG4917 EutP Ethanolamine util 55.2 26 0.00056 28.4 4.6 39 16-65 89-127 (148)
278 PRK14077 pnk inorganic polypho 54.4 42 0.0009 30.9 6.6 82 20-127 12-98 (287)
279 TIGR01857 FGAM-synthase phosph 54.4 10 0.00022 41.9 2.8 33 268-300 1188-1220(1239)
280 COG2185 Sbm Methylmalonyl-CoA 53.5 93 0.002 25.5 7.7 78 17-111 11-90 (143)
281 TIGR01735 FGAM_synt phosphorib 53.2 12 0.00027 41.5 3.4 28 274-301 1259-1286(1310)
282 KOG1559|consensus 51.8 6.7 0.00014 35.1 0.8 20 172-191 145-164 (340)
283 TIGR03521 GldG gliding-associa 51.6 75 0.0016 32.0 8.5 86 9-115 174-262 (552)
284 PRK09417 mogA molybdenum cofac 50.9 1.6E+02 0.0035 25.3 10.0 70 17-93 2-80 (193)
285 cd00885 cinA Competence-damage 50.8 45 0.00097 28.0 5.8 41 48-88 23-68 (170)
286 PRK05297 phosphoribosylformylg 50.5 13 0.00028 41.4 3.0 28 274-301 1238-1265(1290)
287 PRK01231 ppnK inorganic polyph 50.5 64 0.0014 29.8 7.2 83 20-127 6-96 (295)
288 smart00852 MoCF_biosynth Proba 50.3 45 0.00097 26.5 5.5 42 48-89 22-68 (135)
289 COG3660 Predicted nucleoside-d 50.3 1.1E+02 0.0024 28.1 8.2 105 16-125 159-273 (329)
290 cd03146 GAT1_Peptidase_E Type 50.1 8 0.00017 33.7 1.1 19 172-190 112-130 (212)
291 COG0521 MoaB Molybdopterin bio 49.8 1.2E+02 0.0026 25.6 8.0 67 20-93 9-81 (169)
292 PRK06852 aldolase; Validated 49.7 95 0.0021 28.9 8.1 57 50-115 194-258 (304)
293 PLN03206 phosphoribosylformylg 48.8 14 0.0003 41.1 2.8 28 274-301 1251-1278(1307)
294 cd03169 GATase1_PfpI_1 Type 1 48.3 15 0.00032 30.9 2.4 26 165-190 98-124 (180)
295 PF07085 DRTGG: DRTGG domain; 47.0 41 0.0009 25.5 4.6 55 58-127 41-95 (105)
296 PLN02699 Bifunctional molybdop 46.4 2.9E+02 0.0064 28.6 11.9 37 57-94 496-539 (659)
297 PRK10653 D-ribose transporter 46.0 2.2E+02 0.0047 25.4 10.4 61 18-87 26-91 (295)
298 cd06274 PBP1_FruR Ligand bindi 45.8 1.8E+02 0.0039 25.2 9.2 43 45-87 17-64 (264)
299 PF04230 PS_pyruv_trans: Polys 44.9 1.6E+02 0.0035 25.2 8.8 27 42-68 4-30 (286)
300 PF03358 FMN_red: NADPH-depend 44.9 42 0.0009 27.0 4.6 80 43-126 17-115 (152)
301 PRK14076 pnk inorganic polypho 44.5 87 0.0019 31.7 7.6 68 45-127 307-382 (569)
302 cd01542 PBP1_TreR_like Ligand- 44.3 1.8E+02 0.0038 25.0 8.9 44 44-87 16-64 (259)
303 PLN02935 Bifunctional NADH kin 43.9 82 0.0018 31.4 7.0 68 45-127 211-296 (508)
304 TIGR01382 PfpI intracellular p 42.7 21 0.00046 29.2 2.5 27 164-190 81-108 (166)
305 cd03131 GATase1_HTS Type 1 glu 42.7 8.3 0.00018 32.8 0.0 78 172-265 96-174 (175)
306 PF02514 CobN-Mg_chel: CobN/Ma 42.2 1.2E+02 0.0027 33.3 8.7 65 16-88 69-141 (1098)
307 PRK10569 NAD(P)H-dependent FMN 42.0 2E+02 0.0044 24.5 8.6 90 20-125 3-107 (191)
308 PRK03708 ppnK inorganic polyph 41.4 90 0.0019 28.5 6.6 67 45-127 17-90 (277)
309 cd06318 PBP1_ABC_sugar_binding 41.0 1.5E+02 0.0033 25.9 8.1 43 45-87 17-64 (282)
310 cd05565 PTS_IIB_lactose PTS_II 40.3 1.7E+02 0.0036 22.4 7.2 66 42-123 13-78 (99)
311 cd01538 PBP1_ABC_xylose_bindin 40.0 1.8E+02 0.0039 25.8 8.5 43 45-87 17-64 (288)
312 cd03142 GATase1_ThuA Type 1 gl 39.7 1.3E+02 0.0029 26.3 7.2 75 42-127 21-98 (215)
313 PRK03604 moaC bifunctional mol 39.5 2.3E+02 0.0049 26.5 9.0 46 47-93 178-229 (312)
314 cd06305 PBP1_methylthioribose_ 39.4 2.1E+02 0.0045 24.8 8.6 43 45-87 17-64 (273)
315 cd06295 PBP1_CelR Ligand bindi 39.4 2.4E+02 0.0053 24.5 9.1 43 45-87 28-73 (275)
316 PF10087 DUF2325: Uncharacteri 39.1 1.6E+02 0.0035 21.9 9.0 76 46-133 12-92 (97)
317 cd06299 PBP1_LacI_like_13 Liga 38.5 2.2E+02 0.0047 24.5 8.6 43 45-87 17-64 (265)
318 cd06273 PBP1_GntR_like_1 This 38.1 2.3E+02 0.0051 24.4 8.7 43 45-87 17-64 (268)
319 cd06322 PBP1_ABC_sugar_binding 37.8 2.2E+02 0.0048 24.6 8.5 43 45-87 17-64 (267)
320 cd06281 PBP1_LacI_like_5 Ligan 37.4 2.7E+02 0.0059 24.1 9.1 43 45-87 17-64 (269)
321 cd06267 PBP1_LacI_sugar_bindin 37.3 2.5E+02 0.0054 23.8 8.7 44 45-88 17-65 (264)
322 PF12724 Flavodoxin_5: Flavodo 37.1 44 0.00094 26.9 3.5 73 44-127 13-85 (143)
323 PF01513 NAD_kinase: ATP-NAD k 36.9 55 0.0012 29.8 4.5 38 75-127 73-110 (285)
324 PRK08227 autoinducer 2 aldolas 36.7 1.5E+02 0.0032 26.9 7.2 55 50-115 164-219 (264)
325 PRK15408 autoinducer 2-binding 36.5 2.7E+02 0.0058 25.9 9.2 67 11-86 16-88 (336)
326 PRK00911 dihydroxy-acid dehydr 35.9 3E+02 0.0065 27.9 9.6 153 15-195 28-211 (552)
327 cd01545 PBP1_SalR Ligand-bindi 35.9 2.4E+02 0.0052 24.3 8.5 43 45-87 17-65 (270)
328 COG0655 WrbA Multimeric flavod 35.4 1.3E+02 0.0028 25.9 6.4 59 20-87 3-84 (207)
329 TIGR02990 ectoine_eutA ectoine 35.2 2.9E+02 0.0063 24.6 8.7 70 43-126 131-215 (239)
330 PLN02699 Bifunctional molybdop 35.1 1.5E+02 0.0033 30.7 7.7 79 11-89 174-260 (659)
331 cd01575 PBP1_GntR Ligand-bindi 35.0 2.4E+02 0.0053 24.2 8.3 43 45-87 17-64 (268)
332 PRK13017 dihydroxy-acid dehydr 35.0 3.1E+02 0.0067 28.0 9.6 152 17-195 46-223 (596)
333 TIGR00045 glycerate kinase. Th 33.9 77 0.0017 30.4 5.0 50 71-127 276-325 (375)
334 PF01174 SNO: SNO glutamine am 33.6 20 0.00043 30.8 1.0 33 259-297 142-174 (188)
335 PF00994 MoCF_biosynth: Probab 33.0 64 0.0014 25.9 3.9 42 48-89 21-67 (144)
336 cd06297 PBP1_LacI_like_12 Liga 32.4 3.2E+02 0.007 23.8 8.8 43 45-87 17-64 (269)
337 PRK09932 glycerate kinase II; 31.5 83 0.0018 30.2 4.8 50 71-127 277-326 (381)
338 cd06298 PBP1_CcpA_like Ligand- 31.4 3.2E+02 0.0069 23.5 8.5 43 45-87 17-64 (268)
339 PF13407 Peripla_BP_4: Peripla 31.2 2.4E+02 0.0052 24.3 7.6 68 45-126 16-89 (257)
340 COG1609 PurR Transcriptional r 30.9 3.7E+02 0.0081 24.9 9.2 61 17-86 57-122 (333)
341 PLN02727 NAD kinase 30.6 1.2E+02 0.0027 32.5 6.2 68 45-127 694-777 (986)
342 PRK13016 dihydroxy-acid dehydr 30.4 3.9E+02 0.0084 27.3 9.4 151 17-195 41-218 (577)
343 cd06279 PBP1_LacI_like_3 Ligan 30.3 3.3E+02 0.0071 23.9 8.5 43 45-87 22-65 (283)
344 TIGR01319 glmL_fam conserved h 30.2 2.8E+02 0.006 27.4 8.2 72 43-122 83-156 (463)
345 cd06282 PBP1_GntR_like_2 Ligan 30.1 3.5E+02 0.0076 23.1 8.8 43 45-87 17-64 (266)
346 cd01537 PBP1_Repressors_Sugar_ 30.0 3.1E+02 0.0067 23.2 8.1 43 45-87 17-64 (264)
347 cd03134 GATase1_PfpI_like A ty 29.9 45 0.00098 27.2 2.5 26 165-190 84-110 (165)
348 PF08532 Glyco_hydro_42M: Beta 29.3 1.3E+02 0.0027 25.9 5.3 52 47-115 33-84 (207)
349 cd01536 PBP1_ABC_sugar_binding 29.2 3.6E+02 0.0077 22.9 8.4 44 44-87 16-64 (267)
350 cd01541 PBP1_AraR Ligand-bindi 29.2 3.8E+02 0.0082 23.2 9.3 43 45-87 17-64 (273)
351 PF06283 ThuA: Trehalose utili 29.2 1.3E+02 0.0028 25.9 5.4 69 46-127 21-91 (217)
352 PRK12493 magnesium chelatase s 29.2 2.1E+02 0.0046 32.2 8.0 41 18-66 253-293 (1310)
353 cd06302 PBP1_LsrB_Quorum_Sensi 29.1 3.7E+02 0.0079 24.0 8.7 43 45-87 17-65 (298)
354 TIGR00640 acid_CoA_mut_C methy 28.7 2.7E+02 0.0059 22.2 6.8 55 50-110 23-79 (132)
355 PRK12448 dihydroxy-acid dehydr 28.4 1.9E+02 0.0041 29.6 6.9 45 15-64 30-74 (615)
356 cd06323 PBP1_ribose_binding Pe 28.3 3E+02 0.0066 23.6 7.8 42 45-86 17-63 (268)
357 PRK10342 glycerate kinase I; P 28.3 1E+02 0.0022 29.6 4.9 49 72-127 278-326 (381)
358 cd06283 PBP1_RegR_EndR_KdgR_li 28.3 3.8E+02 0.0082 22.9 8.8 43 45-87 17-64 (267)
359 cd06321 PBP1_ABC_sugar_binding 28.0 3.5E+02 0.0077 23.3 8.2 43 45-87 17-66 (271)
360 cd06317 PBP1_ABC_sugar_binding 27.9 3.2E+02 0.007 23.6 7.9 43 45-87 18-65 (275)
361 cd03143 A4_beta-galactosidase_ 27.8 2.4E+02 0.0052 22.6 6.5 53 46-115 28-80 (154)
362 PRK04885 ppnK inorganic polyph 27.7 1.4E+02 0.0031 27.0 5.5 56 45-127 16-71 (265)
363 PRK06131 dihydroxy-acid dehydr 27.4 1.5E+02 0.0033 30.0 6.1 43 18-65 38-80 (571)
364 PRK02645 ppnK inorganic polyph 27.2 1.7E+02 0.0037 27.0 6.1 66 45-125 20-89 (305)
365 cd06309 PBP1_YtfQ_like Peripla 27.1 3E+02 0.0065 23.9 7.6 43 45-87 17-64 (273)
366 PRK09271 flavodoxin; Provision 26.9 3.5E+02 0.0076 22.0 7.6 44 43-86 15-59 (160)
367 cd06310 PBP1_ABC_sugar_binding 26.7 4E+02 0.0088 23.0 8.4 43 45-87 17-66 (273)
368 cd01540 PBP1_arabinose_binding 26.5 4.1E+02 0.0088 23.2 8.4 42 45-87 17-63 (289)
369 PRK09250 fructose-bisphosphate 26.5 1.2E+02 0.0026 28.8 4.8 56 51-115 224-311 (348)
370 PF10758 DUF2586: Protein of u 26.4 4.6E+02 0.01 25.0 8.7 106 7-125 24-136 (363)
371 COG0311 PDX2 Predicted glutami 26.2 55 0.0012 28.1 2.3 35 257-297 145-179 (194)
372 cd06301 PBP1_rhizopine_binding 25.9 3.3E+02 0.0071 23.5 7.6 43 45-87 17-65 (272)
373 PLN03069 magnesiumprotoporphyr 25.8 2.9E+02 0.0063 30.9 8.3 42 17-66 265-306 (1220)
374 PRK00549 competence damage-ind 25.8 3E+02 0.0066 26.6 7.8 41 48-88 24-69 (414)
375 PRK06851 hypothetical protein; 25.8 2.2E+02 0.0048 27.2 6.6 52 18-87 214-265 (367)
376 PRK11303 DNA-binding transcrip 25.7 4.9E+02 0.011 23.3 9.2 61 18-87 61-126 (328)
377 cd06296 PBP1_CatR_like Ligand- 25.4 4.4E+02 0.0094 22.7 8.5 43 45-87 17-64 (270)
378 PRK03501 ppnK inorganic polyph 25.1 2.2E+02 0.0047 25.8 6.2 56 45-126 18-74 (264)
379 PRK13405 bchH magnesium chelat 25.1 3.9E+02 0.0085 29.9 9.1 60 17-84 245-311 (1209)
380 TIGR01196 edd 6-phosphoglucona 25.0 2.5E+02 0.0055 28.7 7.1 42 15-63 61-104 (601)
381 PRK03673 hypothetical protein; 24.8 6.4E+02 0.014 24.4 10.8 41 49-89 26-71 (396)
382 cd06300 PBP1_ABC_sugar_binding 24.7 4.6E+02 0.0099 22.6 8.8 43 45-87 17-69 (272)
383 PF09897 DUF2124: Uncharacteri 24.6 49 0.0011 27.3 1.7 45 79-133 81-125 (147)
384 cd06311 PBP1_ABC_sugar_binding 24.2 4.7E+02 0.01 22.7 8.3 43 45-87 17-69 (274)
385 PRK04761 ppnK inorganic polyph 24.2 94 0.002 27.9 3.6 37 76-127 23-59 (246)
386 cd06272 PBP1_hexuronate_repres 23.9 4.3E+02 0.0093 22.6 7.9 43 45-87 17-60 (261)
387 COG2984 ABC-type uncharacteriz 23.6 6.2E+02 0.013 23.8 9.8 88 17-127 158-249 (322)
388 PRK03670 competence damage-ind 23.3 2.2E+02 0.0049 25.5 5.9 41 48-88 24-70 (252)
389 TIGR00200 cinA_nterm competenc 23.2 2E+02 0.0043 28.0 5.9 41 48-88 24-69 (413)
390 cd06288 PBP1_sucrose_transcrip 22.9 2.7E+02 0.0059 23.9 6.4 43 45-87 18-65 (269)
391 cd06289 PBP1_MalI_like Ligand- 22.8 4.8E+02 0.01 22.2 8.4 43 45-87 17-64 (268)
392 cd06324 PBP1_ABC_sugar_binding 22.7 5.5E+02 0.012 22.9 9.4 43 45-87 18-67 (305)
393 PRK14075 pnk inorganic polypho 22.7 2.9E+02 0.0064 24.8 6.6 59 45-127 14-72 (256)
394 PF01220 DHquinase_II: Dehydro 22.5 3.9E+02 0.0085 21.8 6.6 45 44-88 29-77 (140)
395 PF10662 PduV-EutP: Ethanolami 22.5 1.7E+02 0.0036 24.0 4.5 36 16-61 88-123 (143)
396 PRK05568 flavodoxin; Provision 22.2 2.9E+02 0.0063 21.7 5.9 41 43-86 16-56 (142)
397 cd06280 PBP1_LacI_like_4 Ligan 22.2 2.7E+02 0.0059 24.0 6.3 43 45-87 17-64 (263)
398 cd06308 PBP1_sensor_kinase_lik 22.1 5.2E+02 0.011 22.3 8.1 43 45-87 17-65 (270)
399 PRK11780 isoprenoid biosynthes 22.1 90 0.0019 27.4 3.0 28 165-192 118-146 (217)
400 TIGR00110 ilvD dihydroxy-acid 21.4 2.9E+02 0.0062 27.9 6.6 45 16-65 9-53 (535)
401 cd06315 PBP1_ABC_sugar_binding 21.3 5.6E+02 0.012 22.4 9.9 43 45-87 18-65 (280)
402 cd06312 PBP1_ABC_sugar_binding 21.2 5.4E+02 0.012 22.2 8.7 43 45-87 18-66 (271)
403 cd06306 PBP1_TorT-like TorT-li 21.2 5.5E+02 0.012 22.3 8.9 43 45-87 17-66 (268)
404 KOG2371|consensus 20.8 2.3E+02 0.0049 27.1 5.5 81 11-93 182-268 (411)
405 PF13941 MutL: MutL protein 20.8 4.4E+02 0.0095 26.0 7.7 44 45-88 89-134 (457)
406 PF05368 NmrA: NmrA-like famil 20.6 5.4E+02 0.012 21.9 7.9 40 48-88 35-74 (233)
407 PRK00561 ppnK inorganic polyph 20.3 1.3E+02 0.0028 27.2 3.7 36 77-127 32-67 (259)
408 PF02110 HK: Hydroxyethylthiaz 20.2 4.2E+02 0.0091 23.8 6.9 59 50-121 24-83 (246)
409 PF00532 Peripla_BP_1: Peripla 20.1 2.7E+02 0.0058 25.0 5.9 60 19-87 2-65 (279)
410 TIGR00853 pts-lac PTS system, 20.1 3.8E+02 0.0082 20.0 7.1 66 42-123 16-81 (95)
411 PF00834 Ribul_P_3_epim: Ribul 20.0 3.1E+02 0.0068 23.6 6.0 38 48-85 96-134 (201)
No 1
>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=100.00 E-value=4.6e-39 Score=291.93 Aligned_cols=225 Identities=42% Similarity=0.725 Sum_probs=177.6
Q ss_pred EEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHH
Q psy12875 21 IGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADA 100 (308)
Q Consensus 21 IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~ 100 (308)
|||++++.... .......+|++++|+++++++|+++++++++.+.+.+++.++.+|||++|||+.+++.. .|.+.
T Consensus 1 igil~~~~~~~----~~~~~~~~yi~~~Yv~~l~~aG~~vvpi~~~~~~~~l~~~l~~~dG~l~~Gg~~~~~~~-~~~~~ 75 (273)
T cd01747 1 IGILTQPVDGA----GSNKTGHSYIAASYVKFLESAGARVVPIWINESEEYYDKLFKSINGILFPGGAVDIDTS-GYART 75 (273)
T ss_pred CeEEeeecCcc----ccccchhHHHHHHHHHHHHHCCCeEEEEEeCCcHHHHHHHHhhCCEEEECCCCCcCCcc-ccchH
Confidence 79999998651 11233568999999999999999999999886667788889999999999998777653 67777
Q ss_pred HHHHHHHHHHHHHcCCCccEEEechhhhHHHHHhcCCcc-ccccccccccccceeeecCCCCcchhhhHhhhcCCCCeee
Q psy12875 101 GRQILHLVDKINEEGVTFPVLGVCLGFELILQVSNNDTD-FRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLG 179 (308)
Q Consensus 101 ~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~~~gg~~-~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilG 179 (308)
.+.+++.+.+..++|+.+||||||+|||+|+.+ +||+. .+..++.++...
T Consensus 76 ~~~l~~~a~~~~~~g~~~Pv~GiClG~QlL~~~-~gg~~~~~~~~~~~~~~~---------------------------- 126 (273)
T cd01747 76 AKIIYNLALERNDAGDYFPVWGTCLGFELLTYL-TSGETLLLEATEATNSAL---------------------------- 126 (273)
T ss_pred HHHHHHHHHHhhhcCCCCcEEEEcHHHHHHHHH-hCCCccccCCCccccceE----------------------------
Confidence 788889988888877789999999999999999 88863 212111111101
Q ss_pred eehhHHHHHHHhCCcccccCCcccceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccC-CC
Q psy12875 180 VCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYG-LT 258 (308)
Q Consensus 180 iClG~Qll~~~~G~~v~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~-l~ 258 (308)
.+.+ .+...+++||++++.++...+.+...++++|++++++.++.... |.
T Consensus 127 -------------------------~l~~----t~~~~~s~lF~~~p~~l~~~l~~~~~~~~~Hs~~v~~~~~~~~~~l~ 177 (273)
T cd01747 127 -------------------------PLNF----TEDALQSRLFKRFPPDLLKSLATEPLTMNNHRYGISPENFTENGLLS 177 (273)
T ss_pred -------------------------EEEE----ccccccChhhhcCCHHHHHHHhcccHHHhhcccccCHhhcccccccc
Confidence 1111 11124688999999988888888888999999999877764322 66
Q ss_pred CCeEEEEEecC-CCceEEEEEEecCCCEEEEeecCCccCcccCCCCCCCCC
Q psy12875 259 ETWNILTLSKY-KSWEFVSTVEHKEYPIVGIQFHPEKNAYEWTESQHNPHS 308 (308)
Q Consensus 259 ~~~~via~s~~-~~~~~v~ai~~~~~p~~GvQFHPE~~~~~~~~~~~~~~~ 308 (308)
+.+++++++.+ ++.+||++++++++|+||+|||||++.+||+....+|||
T Consensus 178 ~~~~vla~~~d~~g~~fis~ie~~~~pi~gvQFHPEks~few~~~~~~~hs 228 (273)
T cd01747 178 DFFNVLTTNDDWNGVEFISTVEAYKYPIYGVQWHPEKNAFEWKKSSSIPHS 228 (273)
T ss_pred cceEEEEEEecCCCceEEEEEEecCCceEEEecCCCcccccccccCCCCCC
Confidence 78899998754 567899999999999999999999999999998789996
No 2
>KOG1559|consensus
Probab=100.00 E-value=6.7e-36 Score=256.59 Aligned_cols=231 Identities=37% Similarity=0.598 Sum_probs=187.1
Q ss_pred CCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCc
Q psy12875 17 DTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNG 96 (308)
Q Consensus 17 ~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~ 96 (308)
.||+|||+++++.. ++..-...-..+||.+||+++++..|++|+++.++..++.+...++.++||++|||.+ .. .+
T Consensus 51 ykPvIGIL~hpg~g-~~~rl~n~t~~~yIAASYVK~aEsgGARViPli~nepEe~lfqklelvNGviftGGwa--k~-~d 126 (340)
T KOG1559|consen 51 YKPVIGILSHPGDG-ASGRLKNATGRSYIAASYVKLAESGGARVIPLIYNEPEEILFQKLELVNGVIFTGGWA--KR-GD 126 (340)
T ss_pred cCceeEEeccCCCC-ccceeccccCcchhHHHHHHHHHcCCceEEEEecCCcHHHHHHHHHHhceeEecCccc--cc-cc
Confidence 58999999999876 1111112235689999999999999999999999998888888899999999999953 33 36
Q ss_pred hhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCC
Q psy12875 97 YADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFP 176 (308)
Q Consensus 97 ~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~P 176 (308)
|.+..+.++..+.+.+++|+.+||+|||+|+.+|.....-+..+...+|..+.+-.+.+-.
T Consensus 127 Y~~vvkkifnk~le~nDaGehFPvyg~CLGFE~lsmiISqnrdile~~d~vd~AssLqF~~------------------- 187 (340)
T KOG1559|consen 127 YFEVVKKIFNKVLERNDAGEHFPVYGICLGFELLSMIISQNRDILERFDAVDVASSLQFVG------------------- 187 (340)
T ss_pred HHHHHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHhcChhHHHhhcccccccceeeec-------------------
Confidence 8888888999999999999999999999999999877344555544444444332222210
Q ss_pred eeeeehhHHHHHHHhCCcccccCCcccceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccC
Q psy12875 177 VLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYG 256 (308)
Q Consensus 177 ilGiClG~Qll~~~~G~~v~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~ 256 (308)
++ .-.+.+|+.+|.++...+..+..|..+|.+.+++++|..++
T Consensus 188 -----------------nv--------------------n~~~t~FQrFPpELLkkL~~dcLvmq~Hk~gisp~nF~~N~ 230 (340)
T KOG1559|consen 188 -----------------NV--------------------NIHGTMFQRFPPELLKKLSTDCLVMQNHKFGISPKNFQGNP 230 (340)
T ss_pred -----------------cc--------------------ceeehhHhhCCHHHHHHhccchheeeccccccchhhccCCH
Confidence 00 12567999999999888999999999999999999998876
Q ss_pred -CCCCeEEEEEecCC-CceEEEEEEecCCCEEEEeecCCccCcccCCCCCCCCC
Q psy12875 257 -LTETWNILTLSKYK-SWEFVSTVEHKEYPIVGIQFHPEKNAYEWTESQHNPHS 308 (308)
Q Consensus 257 -l~~~~~via~s~~~-~~~~v~ai~~~~~p~~GvQFHPE~~~~~~~~~~~~~~~ 308 (308)
|.+.|+++.++.|+ ..+||..++.+.||++|+|||||+..+|||.+. +||+
T Consensus 231 ~Ls~FFnilTT~~D~~~k~fvSTv~~~kYPvtgfQWHPEKnafEWgss~-IpHs 283 (340)
T KOG1559|consen 231 ALSSFFNILTTCTDGNSKTFVSTVESKKYPVTGFQWHPEKNAFEWGSSD-IPHS 283 (340)
T ss_pred HHHHHHhheeeecCCCceEEEEeecceeccceeeeecCccCccccccCC-CCCC
Confidence 88999999998555 688999999999999999999999999999977 9996
No 3
>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.
Probab=100.00 E-value=2.5e-35 Score=259.55 Aligned_cols=205 Identities=33% Similarity=0.449 Sum_probs=129.9
Q ss_pred CEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCch-
Q psy12875 19 PVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGY- 97 (308)
Q Consensus 19 P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~- 97 (308)
|+|||++++.... .........+|++++|+++++++|+.++++|+..+.+.++..++.+|||+||||.+|++|. .|
T Consensus 1 PvIGI~~~~~~~~--~~~~~~~~~~~i~~~Yv~~i~~aG~~pv~ip~~~~~~~~~~~l~~idGlll~GG~~Di~P~-~y~ 77 (217)
T PF07722_consen 1 PVIGITAQPSESD--SSDFPGYPRSYIAASYVKAIEAAGGRPVPIPYDADDEELDELLDRIDGLLLPGGGSDIDPA-LYG 77 (217)
T ss_dssp -EEEEE-EE------SHHHHHC-SEEEEHHHHHHHHHTT-EEEEE-SS--HHHHHHHHHCSSEEEE---SS-T-GG-GGT
T ss_pred CEEEEeCCccccc--cCCcCchhHHHHhHHHHHHHHHcCCEEEEEccCCCHHHHHHHHhhcCEEEEcCCccchhHh-hcC
Confidence 8999999986421 0112233568999999999999999999999998888889999999999999999888664 33
Q ss_pred ---------hHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhH
Q psy12875 98 ---------ADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQI 168 (308)
Q Consensus 98 ---------~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i 168 (308)
.+..|+.+|+.....+.++++||||||+|||+|+++ +||+++++..+..+ ...+..
T Consensus 78 ~~~~~~~~~~~~~rd~~e~~l~~~a~~~~~PilGICrG~Q~lnv~-~GGtl~q~~~~~~~---~~~~~~----------- 142 (217)
T PF07722_consen 78 EEPSPESGYIDPERDIFELALIRNALGRGKPILGICRGMQLLNVA-FGGTLYQDIPDQPG---FPDHRQ----------- 142 (217)
T ss_dssp ---BTTSHHHHHHHHHHHHHHHHHHCCTT--EEEETHHHHHHHHH-CCSSEESCCCCSS----EEECEE-----------
T ss_pred CcccccCCCcCHHHHHHHHHHHHHHHhcCCCEEEEcHHHHHHHHH-hCCCceeecccCcC---cccccc-----------
Confidence 334678888865555555779999999999999999 99999766532110 011100
Q ss_pred hhhcCCCCeeeeehhHHHHHHHhCCcccccCCcccceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeee
Q psy12875 169 NEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCIT 248 (308)
Q Consensus 169 ~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~ 248 (308)
.......+.+.. .+++.|.+-+.. ....|+++|+++|+
T Consensus 143 ----------------------------~~~~~~~h~v~i-------~~~s~l~~~~~~-------~~~~vns~Hhq~v~ 180 (217)
T PF07722_consen 143 ----------------------------HPQDFPSHPVRI-------VPGSLLAKILGS-------EEIEVNSFHHQAVK 180 (217)
T ss_dssp -----------------------------S-TS--EEEEE-------ETTSTCCCTSHH-------CTEEEEEEECEEEC
T ss_pred ----------------------------ccccccccccee-------ccCchHHHHhCc-------Ccceeecchhhhhh
Confidence 000001112222 134444443321 12347999999998
Q ss_pred eccccccCCCCCeEEEEEecCCCceEEEEEEecC--CCEEEEeecCC
Q psy12875 249 RQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKE--YPIVGIQFHPE 293 (308)
Q Consensus 249 ~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~~--~p~~GvQFHPE 293 (308)
+ ++++|+++|++.|+. |+||+..+ +|++|+|||||
T Consensus 181 ~-------l~~~l~v~A~s~Dg~---iEaie~~~~~~~~~GvQwHPE 217 (217)
T PF07722_consen 181 P-------LGEGLRVTARSPDGV---IEAIESPEHKYPILGVQWHPE 217 (217)
T ss_dssp C-------HHCCEEEEEEECTSS---EEEEEECCESS-EEEESS-CC
T ss_pred c-------cCCCceEEEEecCCc---EEEEEEcCCCCCEEEEEeCCC
Confidence 5 889999999999887 55777766 46999999999
No 4
>COG2071 Predicted glutamine amidotransferases [General function prediction only]
Probab=100.00 E-value=1.3e-33 Score=244.94 Aligned_cols=210 Identities=23% Similarity=0.321 Sum_probs=153.4
Q ss_pred CCCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCC
Q psy12875 16 TDTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPN 95 (308)
Q Consensus 16 ~~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~ 95 (308)
++||+|||+++...... ...+..-+|+...|++++..+|..++.+|...+.+.....++.+|||++||| .|++|.
T Consensus 1 ~~kpvIGIt~~~~~~~~---~~~~~~~~~~~~~yv~ai~~aGg~pillP~~~d~~~~~~~l~~iDgliltGg-~nV~P~- 75 (243)
T COG2071 1 MSKPVIGITADLIQEIV---GFDGNPWSYLPYDYVDAIIKAGGIPILLPALEDPEDARQYLDLIDGLILTGG-SNVDPS- 75 (243)
T ss_pred CCCCEEEEecchhcccc---ccCCccHHHHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHhhccEEEecCC-CcCCHH-
Confidence 57999999998875311 1223345688899999999999999999976677778888999999999999 589885
Q ss_pred chhH----------HHHHHHHH--HHHHHHcCCCccEEEechhhhHHHHHhcCCccccccccccccccceeeecCCCCcc
Q psy12875 96 GYAD----------AGRQILHL--VDKINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSS 163 (308)
Q Consensus 96 ~~~~----------~~~~~~e~--~~~~~~~g~~~PvlGIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~ 163 (308)
.|++ ..||.+|+ ++.++++ ++||||||||||+||++ +||+++++..+... .+.++++....
T Consensus 76 ~YGee~~~~~~~~~p~RD~~E~aLi~~ALe~--~iPILgICRG~QllNVa-~GGtL~q~i~~~~~---~~~H~~~~~~~- 148 (243)
T COG2071 76 LYGEEPSEKDGPYDPERDAFELALIRAALER--GIPILGICRGLQLLNVA-LGGTLYQDISEQPG---HIDHRQPNPVH- 148 (243)
T ss_pred HcCCCCCcccCCCCccccHHHHHHHHHHHHc--CCCEEEEccchHHHHHH-hcCeeehhhhcccc---cccccCCCCcc-
Confidence 4543 34777766 5888885 49999999999999999 99999877643211 23333322211
Q ss_pred hhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCcccceeeecccccCCCCCCcCccCCChh-HHHhhccCCceeec
Q psy12875 164 LFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSK-YIKKFYQKPLTHNN 242 (308)
Q Consensus 164 ~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~v~~~ 242 (308)
...+.+.. .+++.|.+-+... + .|+++
T Consensus 149 -----------------------------------------~~~H~V~i---~~~s~La~i~g~~~~--------~VNS~ 176 (243)
T COG2071 149 -----------------------------------------IESHEVHI---EPGSKLAKILGESEF--------MVNSF 176 (243)
T ss_pred -----------------------------------------cceeEEEe---cCCccHHHhcCccce--------eecch
Confidence 11222222 2455555544432 3 36999
Q ss_pred cceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEecCCC-EEEEeecCCccCccc
Q psy12875 243 HIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEYP-IVGIQFHPEKNAYEW 299 (308)
Q Consensus 243 H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~~~p-~~GvQFHPE~~~~~~ 299 (308)
|+++|+. |+++|+|+|.++|+. |+|+++++.. ++|||||||+...+.
T Consensus 177 HhQaIk~-------La~~L~V~A~a~DG~---VEAie~~~~~fvlGVQWHPE~~~~~~ 224 (243)
T COG2071 177 HHQAIKK-------LAPGLVVEARAPDGT---VEAVEVKNDAFVLGVQWHPEYLVDTN 224 (243)
T ss_pred HHHHHHH-------hCCCcEEEEECCCCc---EEEEEecCCceEEEEecChhhhccCC
Confidence 9999985 999999999999987 7799999744 579999999876544
No 5
>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional
Probab=99.97 E-value=2.7e-31 Score=239.11 Aligned_cols=214 Identities=20% Similarity=0.346 Sum_probs=140.0
Q ss_pred CCCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCC-hhHHHHhcCCCCEEEEcCCCCCCCCC
Q psy12875 16 TDTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQD-REYYAEILTQINGVVIPGGGTGFDHP 94 (308)
Q Consensus 16 ~~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~-~~~~~~~l~~~dGlilpGG~~~~~~~ 94 (308)
|+||+|||+++.... .....+++.+.|+++++++|+.++.++.... .+.++..++.+||||++||+.|++|.
T Consensus 5 m~~P~Igi~~~~~~~-------~~~~~~~~~~~y~~~i~~aGg~pv~lp~~~~~~~~~~~~l~~~DGlil~GG~~dv~P~ 77 (254)
T PRK11366 5 MNNPVIGVVMCRNRL-------KGHATQTLQEKYLNAIIHAGGLPIALPHALAEPSLLEQLLPKLDGIYLPGSPSNVQPH 77 (254)
T ss_pred CCCCEEEEeCCCccc-------CcchHHHHHHHHHHHHHHCCCEEEEecCCCCCHHHHHHHHHhCCEEEeCCCCCCcCHh
Confidence 468999999865322 1112457889999999999999999986543 44566677889999999998788652
Q ss_pred Cchh--------HHHHH--HHHHHHHHHHcCCCccEEEechhhhHHHHHhcCCccccccccccccccceeeecCCCCcch
Q psy12875 95 NGYA--------DAGRQ--ILHLVDKINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSL 164 (308)
Q Consensus 95 ~~~~--------~~~~~--~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~ 164 (308)
.|+ ...|+ .+++++.++++ ++||||||+|||+|+++ +||+++++..+.. ....+...+..+
T Consensus 78 -~yg~~~~~~~~~~~rD~~e~~li~~a~~~--~~PILGICrG~Qllnva-~GGtl~~~~~~~~---~~~~h~~~~~~~-- 148 (254)
T PRK11366 78 -LYGENGDEPDADPGRDLLSMALINAALER--RIPIFAICRGLQELVVA-TGGSLHRKLCEQP---ELLEHREDPELP-- 148 (254)
T ss_pred -hcCCCCCCCCCChhHHHHHHHHHHHHHHC--CCCEEEECHhHHHHHHH-hCCeEeecccccc---cccccccCCccc--
Confidence 221 22334 34556777874 49999999999999999 9999976531100 001111100000
Q ss_pred hhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCcccceeeecccccCCCCCCcCccCCC--hhHHHhhccCCceeec
Q psy12875 165 FSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQVP--SKYIKKFYQKPLTHNN 242 (308)
Q Consensus 165 ~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~v~~~ 242 (308)
... ..+....+.+. .++.+..-++ ..+ .|+++
T Consensus 149 ------------------------------~~~-~~~~~h~v~~~-------~~s~l~~i~~~~~~~--------~Vns~ 182 (254)
T PRK11366 149 ------------------------------VEQ-QYAPSHEVQVE-------EGGLLSALLPECSNF--------WVNSL 182 (254)
T ss_pred ------------------------------ccc-ccCCceEEEEC-------CCCcHHHhcCCCceE--------EeehH
Confidence 000 00011122211 1222211111 122 35899
Q ss_pred cceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEecCCCE-EEEeecCCccCcccCC
Q psy12875 243 HIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEYPI-VGIQFHPEKNAYEWTE 301 (308)
Q Consensus 243 H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~~~p~-~GvQFHPE~~~~~~~~ 301 (308)
|+++|.. +|++++++|+++|+. |+|++++++++ +|||||||+..++.+.
T Consensus 183 H~q~V~~-------l~~gl~v~A~s~dg~---ieAie~~~~~~~~GVQwHPE~~~~~~~~ 232 (254)
T PRK11366 183 HGQGAKV-------VSPRLRVEARSPDGL---VEAVSVINHPFALGVQWHPEWNSSEYAL 232 (254)
T ss_pred HHHHHhh-------cccceEEEEEcCCCc---EEEEEeCCCCCEEEEEeCCCcCCCCCch
Confidence 9999874 999999999998886 77999999885 8999999999877653
No 6
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.97 E-value=1e-30 Score=220.30 Aligned_cols=127 Identities=26% Similarity=0.422 Sum_probs=111.4
Q ss_pred ceeeecCCCCcch----hhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccC---CcccceeeecccccCCCCCCcCccC
Q psy12875 152 NLKFLPGAKRSSL----FSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRK---SCKVQQVNLNLKFLPGAKRSSLFSQ 224 (308)
Q Consensus 152 ~l~~~pg~~~~~~----~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~---~g~~~~~~~~~~~~~~~~~~~l~~~ 224 (308)
.+.++|||++|.. .+.|+++.+++|+||||||||.|+++|||+|.+.+ ||++..+.+ .++.+|++
T Consensus 48 ~iviSPGPG~P~d~G~~~~~i~~~~~~~PiLGVCLGHQai~~~fGg~V~~a~~~~HGK~s~i~h--------~g~~iF~g 119 (191)
T COG0512 48 AIVISPGPGTPKDAGISLELIRRFAGRIPILGVCLGHQAIAEAFGGKVVRAKEPMHGKTSIITH--------DGSGLFAG 119 (191)
T ss_pred EEEEcCCCCChHHcchHHHHHHHhcCCCCEEEECccHHHHHHHhCCEEEecCCCcCCeeeeeec--------CCcccccC
Confidence 4899999999983 55777777899999999999999999999999885 788775543 36789999
Q ss_pred CChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEecCCCEEEEeecCCccCcccCC
Q psy12875 225 VPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNAYEWTE 301 (308)
Q Consensus 225 ~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~~~p~~GvQFHPE~~~~~~~~ 301 (308)
+++++.+ .+|||..+++.+ +|+.++++|++++++ .|||++|+++|+||+|||||+..|++|.
T Consensus 120 lp~~f~v--------~RYHSLvv~~~~-----lP~~l~vtA~~~d~~--~IMai~h~~~pi~gvQFHPESilT~~G~ 181 (191)
T COG0512 120 LPNPFTV--------TRYHSLVVDPET-----LPEELEVTAESEDGG--VIMAVRHKKLPIYGVQFHPESILTEYGH 181 (191)
T ss_pred CCCCCEE--------EeeEEEEecCCC-----CCCceEEEEEeCCCC--EEEEEeeCCCCEEEEecCCccccccchH
Confidence 9998875 999999998755 899999999997764 5999999999999999999999999985
No 7
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=99.95 E-value=4.1e-27 Score=203.48 Aligned_cols=173 Identities=20% Similarity=0.401 Sum_probs=122.7
Q ss_pred CCCCccchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCC
Q psy12875 38 YPNYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVT 117 (308)
Q Consensus 38 ~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~ 117 (308)
.+++++|... ++++|++.|.++.++++.... ...++.+||||++||+.. +. .+. .+.+++++ .+ .+
T Consensus 7 id~~dsf~~~-i~~~l~~~g~~~~v~~~~~~~---~~~l~~~d~iIi~gGp~~--~~-~~~----~~~~~i~~-~~--~~ 72 (190)
T PRK06895 7 INNHDSFTFN-LVDLIRKLGVPMQVVNVEDLD---LDEVENFSHILISPGPDV--PR-AYP----QLFAMLER-YH--QH 72 (190)
T ss_pred EeCCCchHHH-HHHHHHHcCCcEEEEECCccC---hhHhccCCEEEECCCCCC--hH-Hhh----HHHHHHHH-hc--CC
Confidence 3456788654 899999999999988864321 224678999999888732 21 122 34455554 44 34
Q ss_pred ccEEEechhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccc
Q psy12875 118 FPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDF 197 (308)
Q Consensus 118 ~PvlGIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~ 197 (308)
+|+||||+|||+|+.+ +||++.+.. +
T Consensus 73 ~PiLGIClG~Qlla~~-~Gg~V~~~~--------------------------------------------------~--- 98 (190)
T PRK06895 73 KSILGVCLGHQTLCEF-FGGELYNLN--------------------------------------------------N--- 98 (190)
T ss_pred CCEEEEcHHHHHHHHH-hCCeEeecC--------------------------------------------------C---
Confidence 9999999999999999 999873210 0
Q ss_pred cCCcccceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEE
Q psy12875 198 RKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVST 277 (308)
Q Consensus 198 ~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~a 277 (308)
..++....+.. .+++++|++++.++. ++++|++.+.+.. +|+++.++|.++++ ++++
T Consensus 99 ~~~g~~~~v~~-------~~~~~l~~~~~~~~~--------v~~~Hs~~v~~~~-----lp~~l~~~a~~~~~---~i~a 155 (190)
T PRK06895 99 VRHGQQRPLKV-------RSNSPLFDGLPEEFN--------IGLYHSWAVSEEN-----FPTPLEITAVCDEN---VVMA 155 (190)
T ss_pred CccCceEEEEE-------CCCChhhhcCCCceE--------EEcchhheecccc-----cCCCeEEEEECCCC---cEEE
Confidence 00111111111 246789998887665 4899999997533 78889998887554 4889
Q ss_pred EEecCCCEEEEeecCCccCcccCC
Q psy12875 278 VEHKEYPIVGIQFHPEKNAYEWTE 301 (308)
Q Consensus 278 i~~~~~p~~GvQFHPE~~~~~~~~ 301 (308)
++++++|+||+|||||+..++||.
T Consensus 156 ~~~~~~pi~GvQFHPE~~~~~~g~ 179 (190)
T PRK06895 156 MQHKTLPIYGVQFHPESYISEFGE 179 (190)
T ss_pred EEECCCCEEEEEeCCCcCCCcchH
Confidence 999999999999999999999985
No 8
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=99.95 E-value=9.1e-27 Score=200.28 Aligned_cols=170 Identities=22% Similarity=0.325 Sum_probs=120.6
Q ss_pred CCccchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCcc
Q psy12875 40 NYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFP 119 (308)
Q Consensus 40 ~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~P 119 (308)
.+++|. ..+.++|+++|.++.+++++.+.+... .+.++||||++||+.+... . +..+.++++.++ ++|
T Consensus 6 ~~~~~~-~~~~~~l~~~G~~~~~~~~~~~~~~~~-~~~~~dgvil~gG~~~~~~-----~---~~~~~i~~~~~~--~~P 73 (184)
T cd01743 6 NYDSFT-YNLVQYLRELGAEVVVVRNDEITLEEL-ELLNPDAIVISPGPGHPED-----A---GISLEIIRALAG--KVP 73 (184)
T ss_pred CCCccH-HHHHHHHHHcCCceEEEeCCCCCHHHH-hhcCCCEEEECCCCCCccc-----c---hhHHHHHHHHhc--CCC
Confidence 345674 578999999999999999876654332 3578999999887643221 1 133444444553 499
Q ss_pred EEEechhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccC
Q psy12875 120 VLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRK 199 (308)
Q Consensus 120 vlGIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~ 199 (308)
+||||+|||+|+.+ +||++.+.....
T Consensus 74 vlGIC~G~Qlla~~-~Gg~v~~~~~~~----------------------------------------------------- 99 (184)
T cd01743 74 ILGVCLGHQAIAEA-FGGKVVRAPEPM----------------------------------------------------- 99 (184)
T ss_pred EEEECHhHHHHHHH-hCCEEEeCCCCC-----------------------------------------------------
Confidence 99999999999999 999874321100
Q ss_pred CcccceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCC--eEEEEEecCCCceEEEE
Q psy12875 200 SCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTET--WNILTLSKYKSWEFVST 277 (308)
Q Consensus 200 ~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~--~~via~s~~~~~~~v~a 277 (308)
++....+.. .++++|++++..+. ++++|++.+.. ++.+ ++++|+++++. |+|
T Consensus 100 ~g~~~~v~~--------~~~~~~~~~~~~~~--------~~~~H~~~v~~-------~~~~~~~~~la~~~~~~---v~a 153 (184)
T cd01743 100 HGKTSEIHH--------DGSGLFKGLPQPFT--------VGRYHSLVVDP-------DPLPDLLEVTASTEDGV---IMA 153 (184)
T ss_pred cCceeEEEE--------CCCccccCCCCCcE--------EEeCcEEEEec-------CCCCceEEEEEeCCCCe---EEE
Confidence 000011111 24567777776554 49999999975 4555 99999988774 889
Q ss_pred EEecCCCEEEEeecCCccCcccCC
Q psy12875 278 VEHKEYPIVGIQFHPEKNAYEWTE 301 (308)
Q Consensus 278 i~~~~~p~~GvQFHPE~~~~~~~~ 301 (308)
++++++|+||+|||||+..++||.
T Consensus 154 ~~~~~~~i~gvQfHPE~~~~~~g~ 177 (184)
T cd01743 154 LRHRDLPIYGVQFHPESILTEYGL 177 (184)
T ss_pred EEeCCCCEEEEeeCCCcCCCcchH
Confidence 999999999999999999999986
No 9
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=99.95 E-value=6.1e-27 Score=201.83 Aligned_cols=172 Identities=19% Similarity=0.289 Sum_probs=120.9
Q ss_pred CCCccchHHHHHHHHHHcCCeEEEEEcCC-ChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCC
Q psy12875 39 PNYTSYIAASYVKNIEAAGARVVPILIGQ-DREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVT 117 (308)
Q Consensus 39 ~~~~~~i~~~~~~~l~~aG~~~~~i~~~~-~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~ 117 (308)
+++|||. .++++.|++.|+.+.+++.+. +.+++. ..++||||++||+.+... . . ...+.++. .+ .+
T Consensus 6 dn~Dsft-~nl~~~l~~~g~~v~v~~~~~~~~~~~~--~~~~d~iils~GPg~p~~---~-~---~~~~~~~~-~~--~~ 72 (187)
T PRK08007 6 DNYDSFT-WNLYQYFCELGADVLVKRNDALTLADID--ALKPQKIVISPGPCTPDE---A-G---ISLDVIRH-YA--GR 72 (187)
T ss_pred ECCCccH-HHHHHHHHHCCCcEEEEeCCCCCHHHHH--hcCCCEEEEcCCCCChHH---C-C---ccHHHHHH-hc--CC
Confidence 5678886 478999999999999998764 223222 237899999888743221 1 1 12233333 33 34
Q ss_pred ccEEEechhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccc
Q psy12875 118 FPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDF 197 (308)
Q Consensus 118 ~PvlGIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~ 197 (308)
+|+||||+|||+|+.+ +||++.+....
T Consensus 73 ~PiLGIClG~Q~la~a-~Gg~v~~~~~~---------------------------------------------------- 99 (187)
T PRK08007 73 LPILGVCLGHQAMAQA-FGGKVVRAAKV---------------------------------------------------- 99 (187)
T ss_pred CCEEEECHHHHHHHHH-cCCEEEeCCCc----------------------------------------------------
Confidence 8999999999999999 99987532110
Q ss_pred cCCcccceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEE
Q psy12875 198 RKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVST 277 (308)
Q Consensus 198 ~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~a 277 (308)
.+|....+.+ ..+.+|++++..+. ++++|++.|++.. +|++++++|+++++. ++|
T Consensus 100 -~~g~~~~v~~--------~~~~l~~~~~~~~~--------v~~~H~~~v~~~~-----lp~~~~v~a~~~~~~---i~a 154 (187)
T PRK08007 100 -MHGKTSPITH--------NGEGVFRGLANPLT--------VTRYHSLVVEPDS-----LPACFEVTAWSETRE---IMG 154 (187)
T ss_pred -ccCCceEEEE--------CCCCcccCCCCCcE--------EEEcchhEEccCC-----CCCCeEEEEEeCCCc---EEE
Confidence 0111112221 24457887766554 5999999996433 899999999998876 889
Q ss_pred EEecCCCEEEEeecCCccCcccCC
Q psy12875 278 VEHKEYPIVGIQFHPEKNAYEWTE 301 (308)
Q Consensus 278 i~~~~~p~~GvQFHPE~~~~~~~~ 301 (308)
++++++|+||+|||||+..+++|.
T Consensus 155 ~~~~~~~i~GvQfHPE~~~t~~G~ 178 (187)
T PRK08007 155 IRHRQWDLEGVQFHPESILSEQGH 178 (187)
T ss_pred EEeCCCCEEEEEeCCcccCCcchH
Confidence 999999999999999999888774
No 10
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=99.95 E-value=1.2e-26 Score=200.09 Aligned_cols=173 Identities=20% Similarity=0.274 Sum_probs=120.3
Q ss_pred CCCccchHHHHHHHHHHcCCeEEEEEcCC-ChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCC
Q psy12875 39 PNYTSYIAASYVKNIEAAGARVVPILIGQ-DREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVT 117 (308)
Q Consensus 39 ~~~~~~i~~~~~~~l~~aG~~~~~i~~~~-~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~ 117 (308)
+++|||. .+++++|++.|+.+.+++.+. +.+++.. .++||||++||+.+... .. ...+.++++ + .+
T Consensus 6 d~~dsft-~~~~~~l~~~g~~v~v~~~~~~~~~~~~~--~~~d~iilsgGpg~p~~---~~----~~~~~i~~~-~--~~ 72 (188)
T TIGR00566 6 DNYDSFT-YNLVQYFCELGAEVVVKRNDSLTLQEIEA--LLPLLIVISPGPCTPNE---AG----ISLEAIRHF-A--GK 72 (188)
T ss_pred ECCcCHH-HHHHHHHHHcCCceEEEECCCCCHHHHHh--cCCCEEEEcCCCCChhh---cc----hhHHHHHHh-c--cC
Confidence 4577885 578999999999999998654 3333322 25899999998743221 11 124444544 3 35
Q ss_pred ccEEEechhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccc
Q psy12875 118 FPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDF 197 (308)
Q Consensus 118 ~PvlGIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~ 197 (308)
+||||||+|||+|+.+ +||++.+...
T Consensus 73 ~PvLGIC~G~Qll~~~-~GG~v~~~~~----------------------------------------------------- 98 (188)
T TIGR00566 73 LPILGVCLGHQAMGQA-FGGDVVRANT----------------------------------------------------- 98 (188)
T ss_pred CCEEEECHHHHHHHHH-cCCEEeeCCC-----------------------------------------------------
Confidence 9999999999999999 9998742110
Q ss_pred cCCcccceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEE
Q psy12875 198 RKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVST 277 (308)
Q Consensus 198 ~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~a 277 (308)
..+|....+.+ ..+.++.+++.++. ++++|++.|.+.. +|++++++|++++++ .++|
T Consensus 99 ~~~g~~~~v~~--------~~~~~~~~l~~~~~--------v~~~H~~~v~~~~-----l~~~~~v~a~s~~~~--~v~a 155 (188)
T TIGR00566 99 VMHGKTSEIEH--------NGAGIFRGLFNPLT--------ATRYHSLVVEPET-----LPTCFPVTAWEEENI--EIMA 155 (188)
T ss_pred ccccceEEEEE--------CCCccccCCCCCcE--------EEEcccceEeccc-----CCCceEEEEEcCCCC--EEEE
Confidence 00121222221 23446666655443 4899999996433 889999999987654 4899
Q ss_pred EEecCCCEEEEeecCCccCcccCC
Q psy12875 278 VEHKEYPIVGIQFHPEKNAYEWTE 301 (308)
Q Consensus 278 i~~~~~p~~GvQFHPE~~~~~~~~ 301 (308)
++++++|+||+|||||+..++.|.
T Consensus 156 ~~~~~~~i~gvQfHPE~~~t~~G~ 179 (188)
T TIGR00566 156 IRHRDLPLEGVQFHPESILSEQGH 179 (188)
T ss_pred EEeCCCCEEEEEeCCCccCCcccH
Confidence 999999999999999999998875
No 11
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=99.94 E-value=1.4e-26 Score=200.53 Aligned_cols=175 Identities=22% Similarity=0.304 Sum_probs=121.3
Q ss_pred CCCccchHHHHHHHHHHcCCeEEEEEcCC-ChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCC
Q psy12875 39 PNYTSYIAASYVKNIEAAGARVVPILIGQ-DREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVT 117 (308)
Q Consensus 39 ~~~~~~i~~~~~~~l~~aG~~~~~i~~~~-~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~ 117 (308)
+++|||. .+++++|++.|..+.+++++. +.+.+. ..++|++++.||+.+... . ....+.++. .+ .+
T Consensus 6 d~~dsft-~~~~~~l~~~g~~~~~~~~~~~~~~~~~--~~~~~~iilsgGp~~~~~-----~--~~~~~~i~~-~~--~~ 72 (193)
T PRK08857 6 DNYDSFT-YNLYQYFCELGAQVKVVRNDEIDIDGIE--ALNPTHLVISPGPCTPNE-----A--GISLQAIEH-FA--GK 72 (193)
T ss_pred ECCCCcH-HHHHHHHHHCCCcEEEEECCCCCHHHHh--hCCCCEEEEeCCCCChHH-----C--cchHHHHHH-hc--CC
Confidence 4567885 478999999999999999763 322221 235899999998743321 1 112233333 34 35
Q ss_pred ccEEEechhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccc
Q psy12875 118 FPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDF 197 (308)
Q Consensus 118 ~PvlGIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~ 197 (308)
+|+||||+|||+|+.+ +||++.+... .
T Consensus 73 ~PiLGIClG~Qlia~a-~Gg~v~~~~~--------~-------------------------------------------- 99 (193)
T PRK08857 73 LPILGVCLGHQAIAQV-FGGQVVRARQ--------V-------------------------------------------- 99 (193)
T ss_pred CCEEEEcHHHHHHHHH-hCCEEEeCCC--------c--------------------------------------------
Confidence 9999999999999999 9998743110 0
Q ss_pred cCCcccceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEec--CCCceEE
Q psy12875 198 RKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSK--YKSWEFV 275 (308)
Q Consensus 198 ~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~--~~~~~~v 275 (308)
.+|....+.. .++++|.+++..+. ++++|++++.... +|++++++|+++ ++..+.|
T Consensus 100 -~~G~~~~~~~--------~~~~l~~~~~~~~~--------v~~~H~~~v~~~~-----lp~~~~v~a~s~~~~~~~~~i 157 (193)
T PRK08857 100 -MHGKTSPIRH--------TGRSVFKGLNNPLT--------VTRYHSLVVKNDT-----LPECFELTAWTELEDGSMDEI 157 (193)
T ss_pred -eeCceEEEEE--------CCCcccccCCCccE--------EEEccEEEEEcCC-----CCCCeEEEEEecCcCCCcceE
Confidence 0111111111 24457887766554 4999999996432 899999999986 5444569
Q ss_pred EEEEecCCCEEEEeecCCccCcccCC
Q psy12875 276 STVEHKEYPIVGIQFHPEKNAYEWTE 301 (308)
Q Consensus 276 ~ai~~~~~p~~GvQFHPE~~~~~~~~ 301 (308)
++++++++|+||+|||||+..++||.
T Consensus 158 ~~~~~~~~pi~gvQfHPE~~~t~~g~ 183 (193)
T PRK08857 158 MGFQHKTLPIEAVQFHPESIKTEQGH 183 (193)
T ss_pred EEEEeCCCCEEEEeeCCCcCCCcchH
Confidence 99999999999999999999999975
No 12
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=99.94 E-value=2.1e-26 Score=202.41 Aligned_cols=172 Identities=23% Similarity=0.318 Sum_probs=121.9
Q ss_pred CccchHHHHHHHHHHcCCeEEEEEcCCCh-hHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCcc
Q psy12875 41 YTSYIAASYVKNIEAAGARVVPILIGQDR-EYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFP 119 (308)
Q Consensus 41 ~~~~i~~~~~~~l~~aG~~~~~i~~~~~~-~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~P 119 (308)
+++| ...+.++|++.|.++.+++++.+. ......++++||||++||+.+ +. . .+...++++++.+. ++|
T Consensus 9 ~~~~-~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~dgliisGGp~~--~~--~---~~~~~~~i~~~~~~--~~P 78 (214)
T PRK07765 9 YDSF-VFNLVQYLGQLGVEAEVWRNDDPRLADEAAVAAQFDGVLLSPGPGT--PE--R---AGASIDMVRACAAA--GTP 78 (214)
T ss_pred CCcH-HHHHHHHHHHcCCcEEEEECCCcCHHHHHHhhcCCCEEEECCCCCC--hh--h---cchHHHHHHHHHhC--CCC
Confidence 3444 347899999999999999987532 223334678999999999742 31 1 12345667777774 499
Q ss_pred EEEechhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccC
Q psy12875 120 VLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRK 199 (308)
Q Consensus 120 vlGIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~ 199 (308)
|||||+|||+|+.+ +||++.+.....
T Consensus 79 iLGIC~G~Qlla~a-~GG~v~~~~~~~----------------------------------------------------- 104 (214)
T PRK07765 79 LLGVCLGHQAIGVA-FGATVDRAPELL----------------------------------------------------- 104 (214)
T ss_pred EEEEccCHHHHHHH-hCCEEeeCCCCc-----------------------------------------------------
Confidence 99999999999999 999885321100
Q ss_pred CcccceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEE
Q psy12875 200 SCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVE 279 (308)
Q Consensus 200 ~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~ 279 (308)
+|....+.+ ..+.+|.+++..+. ++++|++.+.+.+ +|++++++|+++++. ++|++
T Consensus 105 ~g~~~~v~~--------~~~~~~~~~~~~~~--------v~~~H~~~v~~~~-----lp~~~~vla~s~~~~---vqa~~ 160 (214)
T PRK07765 105 HGKTSSVHH--------TGVGVLAGLPDPFT--------ATRYHSLTILPET-----LPAELEVTARTDSGV---IMAVR 160 (214)
T ss_pred cCceeEEEE--------CCCccccCCCCccE--------EEecchheEeccc-----CCCceEEEEEcCCCc---EEEEE
Confidence 011111111 13336777666554 4899999997433 899999999998876 77999
Q ss_pred ecCCCEEEEeecCCccCcccC
Q psy12875 280 HKEYPIVGIQFHPEKNAYEWT 300 (308)
Q Consensus 280 ~~~~p~~GvQFHPE~~~~~~~ 300 (308)
++++++||+|||||++.++.|
T Consensus 161 ~~~~~i~gvQfHPE~~~t~~g 181 (214)
T PRK07765 161 HRELPIHGVQFHPESVLTEGG 181 (214)
T ss_pred eCCCCEEEEeeCCCcccCcch
Confidence 999889999999999877644
No 13
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=99.94 E-value=2.4e-26 Score=199.21 Aligned_cols=172 Identities=20% Similarity=0.317 Sum_probs=120.2
Q ss_pred CCCccchHHHHHHHHHHcCCeEEEEEcCCC-hhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCC
Q psy12875 39 PNYTSYIAASYVKNIEAAGARVVPILIGQD-REYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVT 117 (308)
Q Consensus 39 ~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~-~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~ 117 (308)
+++|+|. .+++++|++.|.++.+++.+.. .+++. ..++||||+.||+.+... .. ...+.++. .+ .+
T Consensus 6 dn~dsft-~nl~~~l~~~g~~v~v~~~~~~~~~~~~--~~~~d~iIlsgGP~~p~~---~~----~~~~~i~~-~~--~~ 72 (195)
T PRK07649 6 DNYDSFT-FNLVQFLGELGQELVVKRNDEVTISDIE--NMKPDFLMISPGPCSPNE---AG----ISMEVIRY-FA--GK 72 (195)
T ss_pred eCCCccH-HHHHHHHHHCCCcEEEEeCCCCCHHHHh--hCCCCEEEECCCCCChHh---CC----CchHHHHH-hc--CC
Confidence 4577886 4789999999999999987643 22222 237899999999743322 11 12222332 23 34
Q ss_pred ccEEEechhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccc
Q psy12875 118 FPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDF 197 (308)
Q Consensus 118 ~PvlGIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~ 197 (308)
+|+||||+|||+|+.+ +||++.+...
T Consensus 73 ~PvLGIClG~Qlla~~-lGg~V~~~~~----------------------------------------------------- 98 (195)
T PRK07649 73 IPIFGVCLGHQSIAQV-FGGEVVRAER----------------------------------------------------- 98 (195)
T ss_pred CCEEEEcHHHHHHHHH-cCCEEeeCCC-----------------------------------------------------
Confidence 8999999999999999 9998743210
Q ss_pred cCCcccceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEE
Q psy12875 198 RKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVST 277 (308)
Q Consensus 198 ~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~a 277 (308)
..+|....+. ..++++|++++..+. ++++|++.+.... +|++++++|+++++. ++|
T Consensus 99 ~~~G~~~~i~--------~~~~~lf~~~~~~~~--------v~~~H~~~v~~~~-----lp~~~~~~a~s~~~~---v~a 154 (195)
T PRK07649 99 LMHGKTSLMH--------HDGKTIFSDIPNPFT--------ATRYHSLIVKKET-----LPDCLEVTSWTEEGE---IMA 154 (195)
T ss_pred cccCCeEEEE--------ECCChhhcCCCCCCE--------EEEechheEeccc-----CCCCeEEEEEcCCCc---EEE
Confidence 0011111111 124568988877665 4999999986432 899999999998876 889
Q ss_pred EEecCCCEEEEeecCCccCcccCC
Q psy12875 278 VEHKEYPIVGIQFHPEKNAYEWTE 301 (308)
Q Consensus 278 i~~~~~p~~GvQFHPE~~~~~~~~ 301 (308)
++++++|+||+|||||+..++.|.
T Consensus 155 ~~~~~~~i~gvQFHPE~~~t~~g~ 178 (195)
T PRK07649 155 IRHKTLPIEGVQFHPESIMTSHGK 178 (195)
T ss_pred EEECCCCEEEEEECCCCCCCccHH
Confidence 999999999999999999887664
No 14
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=99.94 E-value=2.2e-26 Score=195.05 Aligned_cols=175 Identities=26% Similarity=0.451 Sum_probs=122.1
Q ss_pred HHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHH-HHHHHHHHHHHHcCCCccEEEech
Q psy12875 47 ASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAG-RQILHLVDKINEEGVTFPVLGVCL 125 (308)
Q Consensus 47 ~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~-~~~~e~~~~~~~~g~~~PvlGIC~ 125 (308)
+|..++|+++|+++++. .+.+ .+.++|+||+||-++.- + .+.... +.+.+.+++..+.+ +|+||||+
T Consensus 15 ~Sv~~Aler~G~~~~vs---~d~~----~i~~AD~liLPGVGaf~-~--am~~L~~~gl~~~i~~~~~~~--kP~LGICl 82 (204)
T COG0118 15 RSVKKALERLGAEVVVS---RDPE----EILKADKLILPGVGAFG-A--AMANLRERGLIEAIKEAVESG--KPFLGICL 82 (204)
T ss_pred HHHHHHHHHcCCeeEEe---cCHH----HHhhCCEEEecCCCCHH-H--HHHHHHhcchHHHHHHHHhcC--CCEEEEeH
Confidence 47789999999988744 3443 46789999999988411 1 122222 25677788888754 99999999
Q ss_pred hhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCcccce
Q psy12875 126 GFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQ 205 (308)
Q Consensus 126 G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~~~~ 205 (308)
|||+|...+.++... .+|++.||..+.+ .....++|.|||. .+..
T Consensus 83 GMQlLfe~SeE~~~~----------~GLg~i~G~V~r~-----~~~~~kvPHMGWN------------~l~~-------- 127 (204)
T COG0118 83 GMQLLFERSEEGGGV----------KGLGLIPGKVVRF-----PAEDLKVPHMGWN------------QVEF-------- 127 (204)
T ss_pred hHHhhhhcccccCCC----------CCcceecceEEEc-----CCCCCCCCccccc------------eeec--------
Confidence 999999886666442 3588888876543 1112467777774 3222
Q ss_pred eeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEecCCCE
Q psy12875 206 VNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEYPI 285 (308)
Q Consensus 206 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~~~p~ 285 (308)
..+++||+++++.. .+|+.|||++.+. +.-.++++++.+ .+|.++++..+ +
T Consensus 128 ----------~~~~~l~~gi~~~~--------~~YFVHSY~~~~~--------~~~~v~~~~~YG-~~f~AaV~k~N--~ 178 (204)
T COG0118 128 ----------VRGHPLFKGIPDGA--------YFYFVHSYYVPPG--------NPETVVATTDYG-EPFPAAVAKDN--V 178 (204)
T ss_pred ----------cCCChhhcCCCCCC--------EEEEEEEEeecCC--------CCceEEEeccCC-CeeEEEEEeCC--E
Confidence 24788999987632 3499999999741 223466765555 45899998774 9
Q ss_pred EEEeecCCccCc
Q psy12875 286 VGIQFHPEKNAY 297 (308)
Q Consensus 286 ~GvQFHPE~~~~ 297 (308)
+|+|||||+|..
T Consensus 179 ~g~QFHPEKSg~ 190 (204)
T COG0118 179 FGTQFHPEKSGK 190 (204)
T ss_pred EEEecCcccchH
Confidence 999999999964
No 15
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=99.94 E-value=6.5e-26 Score=195.66 Aligned_cols=166 Identities=23% Similarity=0.362 Sum_probs=118.3
Q ss_pred ccchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEE
Q psy12875 42 TSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVL 121 (308)
Q Consensus 42 ~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~Pvl 121 (308)
+.++ .++.++|++.|+++..++++.+.++++.. ++||||+|||+.+... + ...++++.+.+. ++|+|
T Consensus 8 ~~~~-~~l~~~l~~~g~~~~~~~~~~~~~~~~~~--~~~glii~Gg~~~~~~-----~---~~~~~i~~~~~~--~~Pil 74 (188)
T TIGR00888 8 SQYT-QLIARRLRELGVYSELVPNTTPLEEIREK--NPKGIILSGGPSSVYA-----E---NAPRADEKIFEL--GVPVL 74 (188)
T ss_pred chHH-HHHHHHHHHcCCEEEEEeCCCCHHHHhhc--CCCEEEECCCCCCcCc-----C---CchHHHHHHHhC--CCCEE
Confidence 3443 57789999999999999987765544331 3569999999764332 1 123445555663 49999
Q ss_pred EechhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCc
Q psy12875 122 GVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSC 201 (308)
Q Consensus 122 GIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g 201 (308)
|||+|||+|+.+ +||++.+... |.+|+. ++
T Consensus 75 GIC~G~Qll~~~-lgg~v~~~~~-------------------------------~~~g~~------------~v------ 104 (188)
T TIGR00888 75 GICYGMQLMAKQ-LGGEVGRAEK-------------------------------REYGKA------------EL------ 104 (188)
T ss_pred EECHHHHHHHHh-cCceEecCCC-------------------------------ccceeE------------EE------
Confidence 999999999999 9997642110 001110 11
Q ss_pred ccceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEec
Q psy12875 202 KVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHK 281 (308)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~ 281 (308)
.. ...+++|.++++++. ++++|++.+.. +|++++++|+++++. +++++++
T Consensus 105 -----~~-------~~~~~l~~~~~~~~~--------~~~~H~~~v~~-------l~~~~~vla~~~~~~---v~a~~~~ 154 (188)
T TIGR00888 105 -----EI-------LDEDDLFRGLPDEST--------VWMSHGDKVKE-------LPEGFKVLATSDNCP---VAAMAHE 154 (188)
T ss_pred -----EE-------ecCCHhhcCCCCCcE--------EEeEccceeec-------CCCCCEEEEECCCCC---eEEEEEC
Confidence 11 134578888876554 38899999863 899999999988765 7799999
Q ss_pred CCCEEEEeecCCccCcccC
Q psy12875 282 EYPIVGIQFHPEKNAYEWT 300 (308)
Q Consensus 282 ~~p~~GvQFHPE~~~~~~~ 300 (308)
++|+||+|||||++.+++|
T Consensus 155 ~~~~~g~QfHPE~~~~~~g 173 (188)
T TIGR00888 155 EKPIYGVQFHPEVTHTEYG 173 (188)
T ss_pred CCCEEEEeeCCccCCChhh
Confidence 8899999999999987655
No 16
>PRK05670 anthranilate synthase component II; Provisional
Probab=99.94 E-value=7.9e-26 Score=195.28 Aligned_cols=171 Identities=26% Similarity=0.385 Sum_probs=117.6
Q ss_pred CCCccchHHHHHHHHHHcCCeEEEEEcCC-ChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCC
Q psy12875 39 PNYTSYIAASYVKNIEAAGARVVPILIGQ-DREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVT 117 (308)
Q Consensus 39 ~~~~~~i~~~~~~~l~~aG~~~~~i~~~~-~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~ 117 (308)
+.+++|. .++.++|++.|..+.++++.. +.+.+ ..+ ++||||++||+.+... . ....+++++ .+ .+
T Consensus 6 d~~d~f~-~~i~~~l~~~g~~~~v~~~~~~~~~~~-~~~-~~dglIlsgGpg~~~d---~----~~~~~~l~~-~~--~~ 72 (189)
T PRK05670 6 DNYDSFT-YNLVQYLGELGAEVVVYRNDEITLEEI-EAL-NPDAIVLSPGPGTPAE---A----GISLELIRE-FA--GK 72 (189)
T ss_pred ECCCchH-HHHHHHHHHCCCcEEEEECCCCCHHHH-HhC-CCCEEEEcCCCCChHH---c----chHHHHHHH-hc--CC
Confidence 3456775 588999999999999999864 33333 223 4899999988743321 1 122234443 33 34
Q ss_pred ccEEEechhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccc
Q psy12875 118 FPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDF 197 (308)
Q Consensus 118 ~PvlGIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~ 197 (308)
+||||||+|||+|+.+ +||++.+... .
T Consensus 73 ~PvLGIClG~Qlla~a-lGg~v~~~~~----------~------------------------------------------ 99 (189)
T PRK05670 73 VPILGVCLGHQAIGEA-FGGKVVRAKE----------I------------------------------------------ 99 (189)
T ss_pred CCEEEECHHHHHHHHH-hCCEEEecCC----------c------------------------------------------
Confidence 8999999999999999 9998743210 0
Q ss_pred cCCcccceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEE
Q psy12875 198 RKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVST 277 (308)
Q Consensus 198 ~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~a 277 (308)
.+|....+. ...+++|++++.++. ++++|++.|.+.+ +|++++++|+++++. ++|
T Consensus 100 -~~g~~~~v~--------~~~~~l~~~~~~~~~--------v~~~H~~~v~~~~-----lp~~~~~la~s~~~~---i~a 154 (189)
T PRK05670 100 -MHGKTSPIE--------HDGSGIFAGLPNPFT--------VTRYHSLVVDRES-----LPDCLEVTAWTDDGE---IMG 154 (189)
T ss_pred -ccCceeEEE--------eCCCchhccCCCCcE--------EEcchhheecccc-----CCCceEEEEEeCCCc---EEE
Confidence 001111111 124567877766544 4999999996422 889999999997775 789
Q ss_pred EEecCCCEEEEeecCCccCcccC
Q psy12875 278 VEHKEYPIVGIQFHPEKNAYEWT 300 (308)
Q Consensus 278 i~~~~~p~~GvQFHPE~~~~~~~ 300 (308)
++++++|+||+|||||++.++.|
T Consensus 155 ~~~~~~~~~gvQfHPE~~~~~~g 177 (189)
T PRK05670 155 VRHKELPIYGVQFHPESILTEHG 177 (189)
T ss_pred EEECCCCEEEEeeCCCcCCCcch
Confidence 99998899999999999876554
No 17
>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=99.94 E-value=5.3e-26 Score=196.36 Aligned_cols=163 Identities=26% Similarity=0.395 Sum_probs=122.4
Q ss_pred EEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchh--
Q psy12875 21 IGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYA-- 98 (308)
Q Consensus 21 IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~-- 98 (308)
|||+++.... ..+....+|+..+++++|+++|+.++++++..+.++++..++++||||+|||++. .+. .|.
T Consensus 1 ~gi~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~G~~~~iv~~~~~~~~~~~~l~~~dglvl~GG~~~-~~~-~~~~~ 73 (189)
T cd01745 1 IGITARLREE-----EGGYERRDYLNQYYVDAVRKAGGLPVLLPPVDDEEDLEQYLELLDGLLLTGGGDV-DPP-LYGEE 73 (189)
T ss_pred CEEcCccccc-----cCccHHHHHHHHHHHHHHHHCCCEEEEeCCCCChHHHHHHHhhCCEEEECCCCCC-Chh-hcCCC
Confidence 5888886554 1122236789999999999999999999987765556666789999999999843 221 111
Q ss_pred --------HHHHH--HHHHHHHHHHcCCCccEEEechhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhH
Q psy12875 99 --------DAGRQ--ILHLVDKINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQI 168 (308)
Q Consensus 99 --------~~~~~--~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i 168 (308)
...++ ..+.++.+.+. ++||||||+|||+|+.+ +||++.+
T Consensus 74 ~~~~~~~~~~~r~~~~~~~~~~~~~~--~~PilgiC~G~Q~l~~~-~Gg~v~~--------------------------- 123 (189)
T cd01745 74 PHPELGPIDPERDAFELALLRAALER--GKPILGICRGMQLLNVA-LGGTLYQ--------------------------- 123 (189)
T ss_pred CCcccCCCChhHHHHHHHHHHHHHHC--CCCEEEEcchHHHHHHH-hCCeEEc---------------------------
Confidence 12233 35566777774 48999999999999999 8887521
Q ss_pred hhhcCCCCeeeeehhHHHHHHHhCCcccccCCcccceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeee
Q psy12875 169 NEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCIT 248 (308)
Q Consensus 169 ~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~ 248 (308)
.. .++++|++.|.
T Consensus 124 -------------------------------------------------~~------------------~v~~~H~~~v~ 136 (189)
T cd01745 124 -------------------------------------------------DI------------------RVNSLHHQAIK 136 (189)
T ss_pred -------------------------------------------------CC------------------ceechHHHHHh
Confidence 00 13789999886
Q ss_pred eccccccCCCCCeEEEEEecCCCceEEEEEEecC-CCEEEEeecCCccCc
Q psy12875 249 RQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKE-YPIVGIQFHPEKNAY 297 (308)
Q Consensus 249 ~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~~-~p~~GvQFHPE~~~~ 297 (308)
. +|++++++|+++++. ++|+++++ .+++|+|||||+..+
T Consensus 137 ~-------~~~~~~vla~~~d~~---vea~~~~~~~~~~gvQfHPE~~~~ 176 (189)
T cd01745 137 R-------LADGLRVEARAPDGV---IEAIESPDRPFVLGVQWHPEWLAD 176 (189)
T ss_pred h-------cCCCCEEEEECCCCc---EEEEEeCCCCeEEEEecCCCcCcc
Confidence 3 889999999987876 78999987 689999999999987
No 18
>CHL00101 trpG anthranilate synthase component 2
Probab=99.94 E-value=6.6e-26 Score=195.93 Aligned_cols=172 Identities=22% Similarity=0.287 Sum_probs=118.7
Q ss_pred CCCccchHHHHHHHHHHcCCeEEEEEcCC-ChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCC
Q psy12875 39 PNYTSYIAASYVKNIEAAGARVVPILIGQ-DREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVT 117 (308)
Q Consensus 39 ~~~~~~i~~~~~~~l~~aG~~~~~i~~~~-~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~ 117 (308)
+++++|. .++++.|++.|..+.+++.+. +.+.+ ....+||||++||+.+... . .....+.++.+ .+
T Consensus 6 d~~dsft-~~l~~~l~~~g~~~~v~~~~~~~~~~~--~~~~~dgiiisgGpg~~~~----~----~~~~~i~~~~~--~~ 72 (190)
T CHL00101 6 DNYDSFT-YNLVQSLGELNSDVLVCRNDEIDLSKI--KNLNIRHIIISPGPGHPRD----S----GISLDVISSYA--PY 72 (190)
T ss_pred ECCCchH-HHHHHHHHhcCCCEEEEECCCCCHHHH--hhCCCCEEEECCCCCChHH----C----cchHHHHHHhc--CC
Confidence 4567775 578999999999999888653 22222 2247999999999743211 0 11122223344 34
Q ss_pred ccEEEechhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccc
Q psy12875 118 FPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDF 197 (308)
Q Consensus 118 ~PvlGIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~ 197 (308)
+|+||||+|||+|+.+ +||++.+... +
T Consensus 73 ~PiLGIClG~Qlla~~-~Gg~V~~~~~-------------~--------------------------------------- 99 (190)
T CHL00101 73 IPILGVCLGHQSIGYL-FGGKIIKAPK-------------P--------------------------------------- 99 (190)
T ss_pred CcEEEEchhHHHHHHH-hCCEEEECCC-------------c---------------------------------------
Confidence 9999999999999999 9998743210 0
Q ss_pred cCCcccceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEE
Q psy12875 198 RKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVST 277 (308)
Q Consensus 198 ~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~a 277 (308)
.+|....+. ...+++|++++..+. ++++|++.|++.. +|++++++|+++++. +++
T Consensus 100 -~~g~~~~~~--------~~~~~l~~~~~~~~~--------v~~~H~~~v~~~~-----lp~~~~vla~s~~~~---v~a 154 (190)
T CHL00101 100 -MHGKTSKIY--------HNHDDLFQGLPNPFT--------ATRYHSLIIDPLN-----LPSPLEITAWTEDGL---IMA 154 (190)
T ss_pred -ccCceeeEe--------eCCcHhhccCCCceE--------EEcchhheeeccc-----CCCceEEEEEcCCCc---EEE
Confidence 011111111 124568888876654 4899999996432 889999999998876 779
Q ss_pred EEecCCC-EEEEeecCCccCcccCC
Q psy12875 278 VEHKEYP-IVGIQFHPEKNAYEWTE 301 (308)
Q Consensus 278 i~~~~~p-~~GvQFHPE~~~~~~~~ 301 (308)
++++++| +||+|||||++.++.|.
T Consensus 155 ~~~~~~~~i~gvQfHPE~~~~~~g~ 179 (190)
T CHL00101 155 CRHKKYKMLRGIQFHPESLLTTHGQ 179 (190)
T ss_pred EEeCCCCCEEEEEeCCccCCChhHH
Confidence 9999999 99999999999877664
No 19
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.94 E-value=5.6e-26 Score=194.69 Aligned_cols=167 Identities=22% Similarity=0.345 Sum_probs=117.7
Q ss_pred ccchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEE
Q psy12875 42 TSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVL 121 (308)
Q Consensus 42 ~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~Pvl 121 (308)
+++. .++.++|+++|+.++++++..+.+ +..++++||||+|||+.+.... .+ .++ .++..+ .++|+|
T Consensus 8 ~~~~-~~~~~~l~~~G~~~~~~~~~~~~~--~~~~~~~dgvIl~Gg~~~~~~~-~~----~~~---~~~~~~--~~~Pil 74 (181)
T cd01742 8 SQYT-HLIARRVRELGVYSEILPNTTPLE--EIKLKNPKGIILSGGPSSVYEE-DA----PRV---DPEIFE--LGVPVL 74 (181)
T ss_pred CchH-HHHHHHHHhcCceEEEecCCCChh--hhcccCCCEEEECCCccccccc-cc----chh---hHHHHh--cCCCEE
Confidence 4443 467899999999999999876533 2257789999999997543221 11 112 223333 249999
Q ss_pred EechhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCc
Q psy12875 122 GVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSC 201 (308)
Q Consensus 122 GIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g 201 (308)
|||+|||+|+.+ +||++.+... |..|+- ++
T Consensus 75 GIC~G~Qll~~~-~gg~v~~~~~-------------------------------~~~G~~------------~v------ 104 (181)
T cd01742 75 GICYGMQLIAKA-LGGKVERGDK-------------------------------REYGKA------------EI------ 104 (181)
T ss_pred EEcHHHHHHHHh-cCCeEEeCCC-------------------------------CcceEE------------EE------
Confidence 999999999999 9997642110 001110 11
Q ss_pred ccceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEec
Q psy12875 202 KVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHK 281 (308)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~ 281 (308)
.. .+.+++|++++..+. ++++|++.+.. +|++++++|+++++. +++++++
T Consensus 105 -----~~-------~~~~~l~~~~~~~~~--------~~~~H~~~v~~-------l~~~~~~la~~~~~~---i~a~~~~ 154 (181)
T cd01742 105 -----EI-------DDSSPLFEGLPDEQT--------VWMSHGDEVVK-------LPEGFKVIASSDNCP---VAAIANE 154 (181)
T ss_pred -----Ee-------cCCChhhcCCCCceE--------EEcchhhhhhh-------cCCCcEEEEeCCCCC---EEEEEeC
Confidence 00 235678888876554 38899998853 899999999998776 7799999
Q ss_pred CCCEEEEeecCCccCcccCC
Q psy12875 282 EYPIVGIQFHPEKNAYEWTE 301 (308)
Q Consensus 282 ~~p~~GvQFHPE~~~~~~~~ 301 (308)
++++||+|||||++.+++|.
T Consensus 155 ~~~~~g~QfHPE~~~~~~g~ 174 (181)
T cd01742 155 EKKIYGVQFHPEVTHTEKGK 174 (181)
T ss_pred CCcEEEEEcCCccccCcChH
Confidence 88999999999999887664
No 20
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=99.94 E-value=1e-25 Score=194.96 Aligned_cols=174 Identities=19% Similarity=0.268 Sum_probs=118.1
Q ss_pred CCCccchHHHHHHHHHHcCCeEEEEEcCC-ChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCC
Q psy12875 39 PNYTSYIAASYVKNIEAAGARVVPILIGQ-DREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVT 117 (308)
Q Consensus 39 ~~~~~~i~~~~~~~l~~aG~~~~~i~~~~-~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~ 117 (308)
+++|||. .++++.|++.|.++.+++.+. +.++++. .++||||+.||+.+... .. ...+.++. .+ .+
T Consensus 6 d~~dsf~-~nl~~~l~~~~~~~~v~~~~~~~~~~~~~--~~~~~iilsgGP~~~~~---~~----~~~~~i~~-~~--~~ 72 (191)
T PRK06774 6 DNYDSFT-YNLYQYFCELGTEVMVKRNDELQLTDIEQ--LAPSHLVISPGPCTPNE---AG----ISLAVIRH-FA--DK 72 (191)
T ss_pred ECCCchH-HHHHHHHHHCCCcEEEEeCCCCCHHHHHh--cCCCeEEEcCCCCChHh---CC----CchHHHHH-hc--CC
Confidence 4567885 478999999999999998763 3333322 26899999999753322 11 11233332 34 35
Q ss_pred ccEEEechhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccc
Q psy12875 118 FPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDF 197 (308)
Q Consensus 118 ~PvlGIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~ 197 (308)
+||||||+|||+|+.+ +||++.+... ..
T Consensus 73 ~PiLGIC~G~Qlla~~-~GG~v~~~~~--------~~------------------------------------------- 100 (191)
T PRK06774 73 LPILGVCLGHQALGQA-FGARVVRARQ--------VM------------------------------------------- 100 (191)
T ss_pred CCEEEECHHHHHHHHH-hCCEEEeCCc--------ce-------------------------------------------
Confidence 9999999999999999 9998743210 00
Q ss_pred cCCcccceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCC-CceEEE
Q psy12875 198 RKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYK-SWEFVS 276 (308)
Q Consensus 198 ~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~-~~~~v~ 276 (308)
+|...... ...+++|++++..+. ++++|++.+.+.. +|++++++|+++++ ..+.++
T Consensus 101 --~G~~~~~~--------~~~~~lf~~l~~~~~--------v~~~Hs~~v~~~~-----lp~~~~vlA~s~~d~~~~~i~ 157 (191)
T PRK06774 101 --HGKTSAIC--------HSGQGVFRGLNQPLT--------VTRYHSLVIAADS-----LPGCFELTAWSERGGEMDEIM 157 (191)
T ss_pred --ecceEEEE--------ecCchhhcCCCCCcE--------EEEeCcceeeccC-----CCCCeEEEEEeCCCCCcceEE
Confidence 01111111 124557877765543 5999999996322 88999999998644 334588
Q ss_pred EEEecCCCEEEEeecCCccCcccC
Q psy12875 277 TVEHKEYPIVGIQFHPEKNAYEWT 300 (308)
Q Consensus 277 ai~~~~~p~~GvQFHPE~~~~~~~ 300 (308)
++++++.|+||+|||||+..++.|
T Consensus 158 ~~~~~~~~i~GvQfHPE~~~~~~G 181 (191)
T PRK06774 158 GIRHRTLPLEGVQFHPESILSEQG 181 (191)
T ss_pred EEEeCCCCEEEEEECCCcCCCccH
Confidence 899998899999999999877655
No 21
>PRK05637 anthranilate synthase component II; Provisional
Probab=99.93 E-value=9.1e-25 Score=190.97 Aligned_cols=184 Identities=17% Similarity=0.200 Sum_probs=118.5
Q ss_pred CCCccchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCc
Q psy12875 39 PNYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTF 118 (308)
Q Consensus 39 ~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~ 118 (308)
+++++|+ .++++.|++.|+.+.+++++.+.+++. ..++||||+.||+.+.. .. ....++++.+. .++
T Consensus 8 D~~dsf~-~nl~~~l~~~g~~~~v~~~~~~~~~l~--~~~~~~iIlsgGPg~~~-----d~--~~~~~li~~~~---~~~ 74 (208)
T PRK05637 8 DNHDSFV-YNLVDAFAVAGYKCTVFRNTVPVEEIL--AANPDLICLSPGPGHPR-----DA--GNMMALIDRTL---GQI 74 (208)
T ss_pred ECCcCHH-HHHHHHHHHCCCcEEEEeCCCCHHHHH--hcCCCEEEEeCCCCCHH-----Hh--hHHHHHHHHHh---CCC
Confidence 4556775 478999999999999999875544332 23789999988864321 11 11223333322 249
Q ss_pred cEEEechhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875 119 PVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFR 198 (308)
Q Consensus 119 PvlGIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~ 198 (308)
||||||+|||+|+.+ +||++.+.. . ..|
T Consensus 75 PiLGIClG~Qlla~a-lGG~V~~~~--~---------~~G---------------------------------------- 102 (208)
T PRK05637 75 PLLGICLGFQALLEH-HGGKVEPCG--P---------VHG---------------------------------------- 102 (208)
T ss_pred CEEEEcHHHHHHHHH-cCCeeccCC--c---------ccc----------------------------------------
Confidence 999999999999999 999874211 0 000
Q ss_pred CCcccceeeecccccCCCCCCcCccCCChhH----HHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceE
Q psy12875 199 KSCKVQQVNLNLKFLPGAKRSSLFSQVPSKY----IKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEF 274 (308)
Q Consensus 199 ~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~ 274 (308)
....+.+. .....+++|.+++.+. ...++.+..|+++|++.|.. +|++++++|+++++.-.+
T Consensus 103 ---~~~~i~~~----~~~~~~~l~~~~~~~~~~~~~~~~g~~~~V~~~H~~~v~~-------lp~~~~vlA~s~~~~~~v 168 (208)
T PRK05637 103 ---TTDNMILT----DAGVQSPVFAGLATDVEPDHPEIPGRKVPIARYHSLGCVV-------APDGMESLGTCSSEIGPV 168 (208)
T ss_pred ---eEEEeEEC----CCCCCCcccCCCCcccccccccccCCceEEEEechhhhhc-------CCCCeEEEEEecCCCCCE
Confidence 00001100 0012345666554210 01111223479999999863 899999999986532225
Q ss_pred EEEEEecCCCEEEEeecCCccCcccCC
Q psy12875 275 VSTVEHKEYPIVGIQFHPEKNAYEWTE 301 (308)
Q Consensus 275 v~ai~~~~~p~~GvQFHPE~~~~~~~~ 301 (308)
++++++.++++||+|||||+..|+.|.
T Consensus 169 ~~a~~~~~~~~~GvQfHPE~~~T~~G~ 195 (208)
T PRK05637 169 IMAAETTDGKAIGLQFHPESVLSPTGP 195 (208)
T ss_pred EEEEEECCCCEEEEEeCCccCcCCCHH
Confidence 789999999999999999999999885
No 22
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=99.92 E-value=3.2e-24 Score=183.52 Aligned_cols=156 Identities=19% Similarity=0.348 Sum_probs=108.6
Q ss_pred HHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhh
Q psy12875 48 SYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGF 127 (308)
Q Consensus 48 ~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~ 127 (308)
+++++|+++|+.+++++++.+.+++ ...++|||+++||+.+ +. + .....++++++.++ ++||||||+||
T Consensus 11 ~~~~~l~~~G~~~~~~~~~~~~~~~--~~~~~dgiil~GG~~~--~~-~----~~~~~~~~~~~~~~--~~PvlGIC~G~ 79 (178)
T cd01744 11 NILRELLKRGCEVTVVPYNTDAEEI--LKLDPDGIFLSNGPGD--PA-L----LDEAIKTVRKLLGK--KIPIFGICLGH 79 (178)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHH--hhcCCCEEEECCCCCC--hh-H----hHHHHHHHHHHHhC--CCCEEEECHHH
Confidence 6789999999999999987654432 3357999999999632 21 1 13455667777774 49999999999
Q ss_pred hHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCcccceee
Q psy12875 128 ELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVN 207 (308)
Q Consensus 128 Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~~~~~~ 207 (308)
|+|+.+ +||++.+... + .++....+.
T Consensus 80 Q~l~~~-~Gg~v~~~~~-------------~----------------------------------------~~g~~~~v~ 105 (178)
T cd01744 80 QLLALA-LGAKTYKMKF-------------G----------------------------------------HRGSNHPVK 105 (178)
T ss_pred HHHHHH-cCCceecCCC-------------C----------------------------------------CCCCceeeE
Confidence 999999 9998743110 0 000000110
Q ss_pred ecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEec-CCCceEEEEEEecCCCEE
Q psy12875 208 LNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSK-YKSWEFVSTVEHKEYPIV 286 (308)
Q Consensus 208 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~-~~~~~~v~ai~~~~~p~~ 286 (308)
. .... .. ..++++|+++++++. +|++++++|++. ++. ++|++++++|+|
T Consensus 106 ~-------~~~~-------~~--------~~v~~~H~~~v~~~~-----lp~~~~v~a~s~~~~~---i~a~~~~~~~i~ 155 (178)
T cd01744 106 D-------LITG-------RV--------YITSQNHGYAVDPDS-----LPGGLEVTHVNLNDGT---VEGIRHKDLPVF 155 (178)
T ss_pred E-------cCCC-------Cc--------EEEEcCceEEEcccc-----cCCceEEEEEECCCCc---EEEEEECCCCeE
Confidence 0 0000 01 124789999997543 889999999984 554 889999999999
Q ss_pred EEeecCCccCcc
Q psy12875 287 GIQFHPEKNAYE 298 (308)
Q Consensus 287 GvQFHPE~~~~~ 298 (308)
|+|||||+..++
T Consensus 156 GvQfHPE~~~~~ 167 (178)
T cd01744 156 SVQFHPEASPGP 167 (178)
T ss_pred EEeeCCCCCCCC
Confidence 999999997753
No 23
>PRK00758 GMP synthase subunit A; Validated
Probab=99.92 E-value=7.6e-25 Score=188.36 Aligned_cols=163 Identities=23% Similarity=0.391 Sum_probs=113.7
Q ss_pred CccchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCC-CEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCcc
Q psy12875 41 YTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQI-NGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFP 119 (308)
Q Consensus 41 ~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~-dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~P 119 (308)
+++|. .++.++++++|.++.++++..+.+ .++++ |||++|||+ +.+. ...+.++++ + .++|
T Consensus 8 ~~~~~-~~i~~~l~~~g~~~~~~~~~~~~~----~l~~~~dgivi~Gg~-~~~~-------~~~~~~~l~---~--~~~P 69 (184)
T PRK00758 8 GGQYN-HLIHRTLRYLGVDAKIIPNTTPVE----EIKAFEDGLILSGGP-DIER-------AGNCPEYLK---E--LDVP 69 (184)
T ss_pred CCchH-HHHHHHHHHcCCcEEEEECCCCHH----HHhhcCCEEEECCCC-Chhh-------ccccHHHHH---h--CCCC
Confidence 34554 467899999999999888765443 34556 999999997 2211 112233333 2 3499
Q ss_pred EEEechhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccC
Q psy12875 120 VLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRK 199 (308)
Q Consensus 120 vlGIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~ 199 (308)
|||||+|||+|+.+ +||++.+... +.+|+- ++
T Consensus 70 ilGIC~G~Q~L~~a-~Gg~v~~~~~-------------------------------~~~g~~------------~i---- 101 (184)
T PRK00758 70 ILGICLGHQLIAKA-FGGEVGRGEY-------------------------------GEYALV------------EV---- 101 (184)
T ss_pred EEEEeHHHHHHHHh-cCcEEecCCC-------------------------------ceeeeE------------EE----
Confidence 99999999999999 9997642110 000100 11
Q ss_pred CcccceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEE
Q psy12875 200 SCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVE 279 (308)
Q Consensus 200 ~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~ 279 (308)
.. ...+.+|.++++.+. ++++|++.+.. +|++++++|+++++. |+|++
T Consensus 102 -------~~-------~~~~~l~~~~~~~~~--------~~~~H~~~v~~-------l~~~~~~la~~~~~~---v~a~~ 149 (184)
T PRK00758 102 -------EI-------LDEDDILKGLPPEIR--------VWASHADEVKE-------LPDGFEILARSDICE---VEAMK 149 (184)
T ss_pred -------EE-------cCCChhhhCCCCCcE--------EEeehhhhhhh-------CCCCCEEEEECCCCC---EEEEE
Confidence 10 124557777776554 48999998853 899999999998886 77999
Q ss_pred ecCCCEEEEeecCCccCcccCC
Q psy12875 280 HKEYPIVGIQFHPEKNAYEWTE 301 (308)
Q Consensus 280 ~~~~p~~GvQFHPE~~~~~~~~ 301 (308)
++++++||+|||||++.+++|.
T Consensus 150 ~~~~~~~g~QfHPE~~~~~~g~ 171 (184)
T PRK00758 150 HKEKPIYGVQFHPEVAHTEYGE 171 (184)
T ss_pred ECCCCEEEEEcCCccCCCchHH
Confidence 9888899999999999887664
No 24
>PLN02335 anthranilate synthase
Probab=99.92 E-value=1.9e-24 Score=190.92 Aligned_cols=177 Identities=20% Similarity=0.287 Sum_probs=120.2
Q ss_pred CCCCccchHHHHHHHHHHcCCeEEEEEcCC-ChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCC
Q psy12875 38 YPNYTSYIAASYVKNIEAAGARVVPILIGQ-DREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGV 116 (308)
Q Consensus 38 ~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~-~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~ 116 (308)
.+++++|. .+++++|++.|..+.+++++. +.+.+ ...++||||+.||+.+... ... ..+.+++ .. .
T Consensus 24 iD~~dsft-~~i~~~L~~~g~~~~v~~~~~~~~~~~--~~~~~d~iVisgGPg~p~d---~~~----~~~~~~~-~~--~ 90 (222)
T PLN02335 24 IDNYDSFT-YNLCQYMGELGCHFEVYRNDELTVEEL--KRKNPRGVLISPGPGTPQD---SGI----SLQTVLE-LG--P 90 (222)
T ss_pred EECCCCHH-HHHHHHHHHCCCcEEEEECCCCCHHHH--HhcCCCEEEEcCCCCChhh---ccc----hHHHHHH-hC--C
Confidence 34556774 578999999999999998753 22222 2246899999998754322 111 1232322 22 4
Q ss_pred CccEEEechhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCccc
Q psy12875 117 TFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTD 196 (308)
Q Consensus 117 ~~PvlGIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~ 196 (308)
++||||||+|||+|+.+ +||++.+......
T Consensus 91 ~~PiLGIClG~QlLa~a-lGg~v~~~~~~~~------------------------------------------------- 120 (222)
T PLN02335 91 LVPLFGVCMGLQCIGEA-FGGKIVRSPFGVM------------------------------------------------- 120 (222)
T ss_pred CCCEEEecHHHHHHHHH-hCCEEEeCCCccc-------------------------------------------------
Confidence 59999999999999999 9998753221000
Q ss_pred ccCCcccceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCC-eEEEEEecCCCceEE
Q psy12875 197 FRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTET-WNILTLSKYKSWEFV 275 (308)
Q Consensus 197 ~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~-~~via~s~~~~~~~v 275 (308)
+|....+.+. ....++||++++..+. ++++|+++|.+.. +|++ ++++|+++++. |
T Consensus 121 ---~G~~~~v~~~-----~~~~~~Lf~~l~~~~~--------v~~~H~~~v~~~~-----lp~~~~~v~a~~~~~~---v 176 (222)
T PLN02335 121 ---HGKSSPVHYD-----EKGEEGLFSGLPNPFT--------AGRYHSLVIEKDT-----FPSDELEVTAWTEDGL---I 176 (222)
T ss_pred ---cCceeeeEEC-----CCCCChhhhCCCCCCE--------EEechhheEeccc-----CCCCceEEEEEcCCCC---E
Confidence 1111111111 0124578988876554 4999999998654 5665 99999987775 8
Q ss_pred EEEEecCCC-EEEEeecCCccCcccCC
Q psy12875 276 STVEHKEYP-IVGIQFHPEKNAYEWTE 301 (308)
Q Consensus 276 ~ai~~~~~p-~~GvQFHPE~~~~~~~~ 301 (308)
++++++++| +||+|||||+..++.|.
T Consensus 177 ~ai~~~~~~~i~GvQfHPE~~~~~~g~ 203 (222)
T PLN02335 177 MAARHRKYKHIQGVQFHPESIITTEGK 203 (222)
T ss_pred EEEEecCCCCEEEEEeCCCCCCChhHH
Confidence 899999888 89999999999887663
No 25
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=99.92 E-value=7.9e-25 Score=189.16 Aligned_cols=178 Identities=24% Similarity=0.391 Sum_probs=125.6
Q ss_pred CCccchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCcc
Q psy12875 40 NYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFP 119 (308)
Q Consensus 40 ~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~P 119 (308)
.+++|. .++.+++++.|..+.+++++.+.......++++||||++||+.+... .....++++++.+ .++|
T Consensus 5 ~~~~~~-~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~d~iii~Gg~~~~~d-------~~~~~~~i~~~~~--~~~P 74 (192)
T PF00117_consen 5 NGDSFT-HSLVRALRELGIDVEVVRVDSDFEEPLEDLDDYDGIIISGGPGSPYD-------IEGLIELIREARE--RKIP 74 (192)
T ss_dssp SSHTTH-HHHHHHHHHTTEEEEEEETTGGHHHHHHHTTTSSEEEEECESSSTTS-------HHHHHHHHHHHHH--TTSE
T ss_pred CCHHHH-HHHHHHHHHCCCeEEEEECCCchhhhhhhhcCCCEEEECCcCCcccc-------ccccccccccccc--cceE
Confidence 345664 68999999999999999987644333225889999999999754321 3355566666666 4599
Q ss_pred EEEechhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccC
Q psy12875 120 VLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRK 199 (308)
Q Consensus 120 vlGIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~ 199 (308)
+||||+|||+|+.+ +||.+.+.. +.|..|+.
T Consensus 75 ilGIC~G~Q~la~~-~G~~v~~~~------------------------------~~~~~g~~------------------ 105 (192)
T PF00117_consen 75 ILGICLGHQILAHA-LGGKVVPSP------------------------------EKPHHGGN------------------ 105 (192)
T ss_dssp EEEETHHHHHHHHH-TTHEEEEEE------------------------------SEEEEEEE------------------
T ss_pred EEEEeehhhhhHHh-cCCcccccc------------------------------cccccccc------------------
Confidence 99999999999999 999764221 00111110
Q ss_pred CcccceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEE
Q psy12875 200 SCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVE 279 (308)
Q Consensus 200 ~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~ 279 (308)
..+.. ...+++|.+.++.+.+ +++|++.|.+..+ +|++++++|++.++. .++++.
T Consensus 106 ----~~~~~-------~~~~~~~~~~~~~~~~--------~~~H~~~v~~~~~----~p~~~~~la~s~~~~--~~~~~~ 160 (192)
T PF00117_consen 106 ----IPISE-------TPEDPLFYGLPESFKA--------YQYHSDAVNPDDL----LPEGFEVLASSSDGC--PIQAIR 160 (192)
T ss_dssp ----EEEEE-------EEEHGGGTTSTSEEEE--------EEEECEEEEEGHH----HHTTEEEEEEETTTT--EEEEEE
T ss_pred ----ccccc-------cccccccccccccccc--------ccccceeeecccc----ccccccccccccccc--cccccc
Confidence 01110 0124678887776654 8999999985321 789999999996642 277999
Q ss_pred ecCCCEEEEeecCCccCcccCC
Q psy12875 280 HKEYPIVGIQFHPEKNAYEWTE 301 (308)
Q Consensus 280 ~~~~p~~GvQFHPE~~~~~~~~ 301 (308)
+.++|+||+|||||++.++.+.
T Consensus 161 ~~~~~i~g~QfHPE~~~~~~~~ 182 (192)
T PF00117_consen 161 HKDNPIYGVQFHPEFSSSPGGP 182 (192)
T ss_dssp ECTTSEEEESSBTTSTTSTTHH
T ss_pred ccccEEEEEecCCcCCCCCCcc
Confidence 9988999999999999988653
No 26
>PRK09065 glutamine amidotransferase; Provisional
Probab=99.92 E-value=2.5e-24 Score=192.09 Aligned_cols=187 Identities=20% Similarity=0.290 Sum_probs=124.9
Q ss_pred EEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHH
Q psy12875 21 IGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADA 100 (308)
Q Consensus 21 IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~ 100 (308)
|+|+...... +. ...++..| ...+...+...|.....+....... ++ .++++||||++||+.+... ...+
T Consensus 4 i~iL~~~~~~-~~---~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~p-~~~~~dgvvi~Gg~~~~~d---~~~w 73 (237)
T PRK09065 4 LLIIQTGTPP-PS---IRARYGDF-PHWIRVALGLAEQPVVVVRVFAGEP-LP-APDDFAGVIITGSWAMVTD---RLDW 73 (237)
T ss_pred EEEEECCCCC-hh---HHhhcCCH-HHHHHHHhccCCceEEEEeccCCCC-CC-ChhhcCEEEEeCCCcccCC---Cchh
Confidence 7888554432 11 12223344 3344556667788877776654321 22 3568999999999865443 2345
Q ss_pred HHHHHHHHHHHHHcCCCccEEEechhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeee
Q psy12875 101 GRQILHLVDKINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGV 180 (308)
Q Consensus 101 ~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGi 180 (308)
...+.++++++.+. ++||||||+|||+|+.+ +||++.+..... -+|+
T Consensus 74 ~~~~~~~i~~~~~~--~~PvlGIC~G~Qlla~a-lGg~V~~~~~g~------------------------------e~G~ 120 (237)
T PRK09065 74 SERTADWLRQAAAA--GMPLLGICYGHQLLAHA-LGGEVGYNPAGR------------------------------ESGT 120 (237)
T ss_pred HHHHHHHHHHHHHC--CCCEEEEChhHHHHHHH-cCCccccCCCCC------------------------------ccce
Confidence 55677888888874 49999999999999999 999874321000 0010
Q ss_pred ehhHHHHHHHhCCcccccCCcccceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCC
Q psy12875 181 CLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTET 260 (308)
Q Consensus 181 ClG~Qll~~~~G~~v~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~ 260 (308)
. .| .++ .....+++|++++..+.+ +++|++.+.. +|++
T Consensus 121 ~------------~v-----------~~~----~~~~~~~l~~~~~~~~~v--------~~~H~d~v~~-------lp~~ 158 (237)
T PRK09065 121 V------------TV-----------ELH----PAAADDPLFAGLPAQFPA--------HLTHLQSVLR-------LPPG 158 (237)
T ss_pred E------------EE-----------EEc----cccccChhhhcCCccCcE--------eeehhhhhhh-------CCCC
Confidence 0 11 110 112356788888776654 8899998863 8999
Q ss_pred eEEEEEecCCCceEEEEEEecCCCEEEEeecCCccC
Q psy12875 261 WNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNA 296 (308)
Q Consensus 261 ~~via~s~~~~~~~v~ai~~~~~p~~GvQFHPE~~~ 296 (308)
++++|+++++. ++++++++ ++||+|||||++.
T Consensus 159 ~~~la~s~~~~---iqa~~~~~-~i~gvQfHPE~~~ 190 (237)
T PRK09065 159 AVVLARSAQDP---HQAFRYGP-HAWGVQFHPEFTA 190 (237)
T ss_pred CEEEEcCCCCC---eeEEEeCC-CEEEEEeCCcCCH
Confidence 99999998887 67999976 6999999999863
No 27
>PLN02347 GMP synthetase
Probab=99.92 E-value=4.7e-24 Score=209.32 Aligned_cols=174 Identities=21% Similarity=0.267 Sum_probs=121.6
Q ss_pred CccchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccE
Q psy12875 41 YTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPV 120 (308)
Q Consensus 41 ~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~Pv 120 (308)
+++|. .++.+++++.|..++++|++.+.+++.. .++||||+|||+.+.... .+......+++.+. + .++||
T Consensus 19 G~~~t-~~I~r~lrelgv~~~v~p~~~~~~~i~~--~~~dgIILsGGP~sv~~~-~~p~~~~~i~~~~~---~--~~iPI 89 (536)
T PLN02347 19 GSQYT-HLITRRVRELGVYSLLLSGTASLDRIAS--LNPRVVILSGGPHSVHVE-GAPTVPEGFFDYCR---E--RGVPV 89 (536)
T ss_pred CCcHH-HHHHHHHHHCCCeEEEEECCCCHHHHhc--CCCCEEEECCCCCccccc-CCchhhHHHHHHHH---h--cCCcE
Confidence 44553 5788999999999999998866554432 278999999998655432 12122223344332 3 34999
Q ss_pred EEechhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCC
Q psy12875 121 LGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKS 200 (308)
Q Consensus 121 lGIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~ 200 (308)
||||+|||+|+.+ +||++.+... +-+|+. .+
T Consensus 90 LGIClG~QlLa~a-lGG~V~~~~~-------------------------------~e~G~~------------~v----- 120 (536)
T PLN02347 90 LGICYGMQLIVQK-LGGEVKPGEK-------------------------------QEYGRM------------EI----- 120 (536)
T ss_pred EEECHHHHHHHHH-cCCEEEecCC-------------------------------cccceE------------EE-----
Confidence 9999999999999 9998642100 001110 11
Q ss_pred cccceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEe
Q psy12875 201 CKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEH 280 (308)
Q Consensus 201 g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~ 280 (308)
.. ..+++||++++.... ..++++|++.+.. +|++|+++|+++++. ++|+++
T Consensus 121 ------~i-------~~~~~Lf~~l~~~~~------~~v~~~Hsd~V~~-------lP~g~~vlA~s~~~~---iaai~~ 171 (536)
T PLN02347 121 ------RV-------VCGSQLFGDLPSGET------QTVWMSHGDEAVK-------LPEGFEVVAKSVQGA---VVAIEN 171 (536)
T ss_pred ------EE-------cCCChhhhcCCCCce------EEEEEEEEEEeee-------CCCCCEEEEEeCCCc---EEEEEE
Confidence 11 135678888876410 1358999998863 899999999998876 789999
Q ss_pred cCCCEEEEeecCCccCcccCC
Q psy12875 281 KEYPIVGIQFHPEKNAYEWTE 301 (308)
Q Consensus 281 ~~~p~~GvQFHPE~~~~~~~~ 301 (308)
++.|+||+|||||++.++.|.
T Consensus 172 ~~~~i~GvQFHPE~~~t~~G~ 192 (536)
T PLN02347 172 RERRIYGLQYHPEVTHSPKGM 192 (536)
T ss_pred CCCCEEEEEccCCCCccchHH
Confidence 989999999999999988774
No 28
>PRK05665 amidotransferase; Provisional
Probab=99.91 E-value=3.7e-24 Score=190.99 Aligned_cols=185 Identities=18% Similarity=0.200 Sum_probs=122.6
Q ss_pred EEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCe--EEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchh
Q psy12875 21 IGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGAR--VVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYA 98 (308)
Q Consensus 21 IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~--~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~ 98 (308)
|+|+.+.... + +.......| ...+.++|..++.. +....... .+++..++++||+|++||+++++. -.
T Consensus 5 i~IL~~~~~~-~---~~~~~~g~~-~~~~~~ll~~~~~~~~~~~~~~~~--~~~p~~~~~~dgiiitGs~~~v~~---~~ 74 (240)
T PRK05665 5 ICILETDVLR-P---ELVAQYQGY-GRMFEQLFARQPIAAEFVVYNVVQ--GDYPADDEKFDAYLVTGSKADSFG---TD 74 (240)
T ss_pred EEEEECCCCC-H---HHHHHhCCH-HHHHHHHHHhCCCCceEEEEeccC--CCCCCCcccCCEEEECCCCCCccc---cc
Confidence 8999665542 1 111222334 33456777777743 33332222 123335678999999999876654 23
Q ss_pred HHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCee
Q psy12875 99 DAGRQILHLVDKINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVL 178 (308)
Q Consensus 99 ~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~Pil 178 (308)
.+.+.+.++++++.+. ++|+||||+|+|+|+.+ +||++.+... |.. .
T Consensus 75 pwi~~l~~~i~~~~~~--~~PilGIC~GhQlla~A-lGG~V~~~~~-------------G~e-----------------~ 121 (240)
T PRK05665 75 PWIQTLKTYLLKLYER--GDKLLGVCFGHQLLALL-LGGKAERASQ-------------GWG-----------------V 121 (240)
T ss_pred hHHHHHHHHHHHHHhc--CCCEEEEeHHHHHHHHH-hCCEEEeCCC-------------Ccc-----------------c
Confidence 4666788888888885 49999999999999999 9998743210 000 0
Q ss_pred eeehhHHHHHHHhCCcccccCCcccceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCC
Q psy12875 179 GVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLT 258 (308)
Q Consensus 179 GiClG~Qll~~~~G~~v~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~ 258 (308)
|+. . +.. ....+++...+..+. ++++|++.|.. ||
T Consensus 122 G~~------------~-----------~~~-------~~~~~~~~~~~~~~~--------~~~~H~D~V~~-------LP 156 (240)
T PRK05665 122 GIH------------R-----------YQL-------AAHAPWMSPAVTELT--------LLISHQDQVTA-------LP 156 (240)
T ss_pred ceE------------E-----------EEe-------cCCCccccCCCCceE--------EEEEcCCeeee-------CC
Confidence 000 1 111 123457776666554 38899999874 99
Q ss_pred CCeEEEEEecCCCceEEEEEEecCCCEEEEeecCCccCc
Q psy12875 259 ETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNAY 297 (308)
Q Consensus 259 ~~~~via~s~~~~~~~v~ai~~~~~p~~GvQFHPE~~~~ 297 (308)
++++++|+|+.|. +++++..+ ++||+|||||++..
T Consensus 157 ~ga~~La~s~~~~---~q~~~~~~-~~~g~QfHPE~~~~ 191 (240)
T PRK05665 157 EGATVIASSDFCP---FAAYHIGD-QVLCFQGHPEFVHD 191 (240)
T ss_pred CCcEEEEeCCCCc---EEEEEeCC-CEEEEecCCcCcHH
Confidence 9999999999998 66998765 69999999999853
No 29
>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=99.91 E-value=5.4e-24 Score=184.15 Aligned_cols=164 Identities=20% Similarity=0.247 Sum_probs=116.1
Q ss_pred HHHHHHHHHcC-CeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEech
Q psy12875 47 ASYVKNIEAAG-ARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCL 125 (308)
Q Consensus 47 ~~~~~~l~~aG-~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~ 125 (308)
..+.+++++.| ......++..+.+.+ ...+.||+|++||+++++.. .+ +.+...++++++... ++||||||+
T Consensus 15 ~li~r~~re~g~v~~e~~~~~~~~~~~--~~~~~~giIlsGgp~sv~~~-~~--w~~~~~~~i~~~~~p--~~pvLGIC~ 87 (198)
T COG0518 15 GLIARRLRELGYVYSEIVPYTGDAEEL--PLDSPDGIIISGGPMSVYDE-DP--WLPREKDLIKDAGVP--GKPVLGICL 87 (198)
T ss_pred HHHHHHHHHcCCceEEEEeCCCCcccc--cccCCCEEEEcCCCCCCccc-cc--cchhHHHHHHHhCCC--CCCEEEECh
Confidence 46789999999 777777777655433 23456999999999766553 11 455667777776653 368999999
Q ss_pred hhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCcccce
Q psy12875 126 GFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQ 205 (308)
Q Consensus 126 G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~~~~ 205 (308)
|||+|+.+ +||++.+... . +...
T Consensus 88 G~Ql~A~~-lGg~V~~~~~-~-------------------------------------------------------E~G~ 110 (198)
T COG0518 88 GHQLLAKA-LGGKVERGPK-R-------------------------------------------------------EIGW 110 (198)
T ss_pred hHHHHHHH-hCCEEeccCC-C-------------------------------------------------------ccce
Confidence 99999999 9998743210 0 0111
Q ss_pred eeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEecCCCE
Q psy12875 206 VNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEYPI 285 (308)
Q Consensus 206 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~~~p~ 285 (308)
..+.+. ...+++|++++.... .|+++|.+.+.. +|++|+++|+|+.|. ++|+++. .++
T Consensus 111 ~~v~~~----~~~~~l~~gl~~~~~-------~v~~sH~D~v~~-------lP~g~~vlA~s~~cp---~qa~~~~-~~~ 168 (198)
T COG0518 111 TPVELT----EGDDPLFAGLPDLFT-------TVFMSHGDTVVE-------LPEGAVVLASSETCP---NQAFRYG-KRA 168 (198)
T ss_pred EEEEEe----cCccccccCCccccC-------ccccchhCcccc-------CCCCCEEEecCCCCh---hhheecC-CcE
Confidence 111110 113368888876552 148999999974 999999999999998 5599998 789
Q ss_pred EEEeecCCccC
Q psy12875 286 VGIQFHPEKNA 296 (308)
Q Consensus 286 ~GvQFHPE~~~ 296 (308)
||+|||||...
T Consensus 169 ~gvQFHpEv~~ 179 (198)
T COG0518 169 YGVQFHPEVTH 179 (198)
T ss_pred EEEeeeeEEeH
Confidence 99999999986
No 30
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed
Probab=99.91 E-value=4.3e-23 Score=193.43 Aligned_cols=160 Identities=18% Similarity=0.363 Sum_probs=112.9
Q ss_pred hHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEec
Q psy12875 45 IAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVC 124 (308)
Q Consensus 45 i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC 124 (308)
+..+|+++|+++|+.++++|++.+.+++.. .++|||+|+||+. ++. + .+...+.++++.+. ++||||||
T Consensus 187 ~k~nivr~L~~~G~~v~vvp~~~~~~~i~~--~~~DGIvLSgGPg--dp~----~-~~~~~~~i~~~~~~--~~PilGIC 255 (360)
T PRK12564 187 VKRNILRELAERGCRVTVVPATTTAEEILA--LNPDGVFLSNGPG--DPA----A-LDYAIEMIRELLEK--KIPIFGIC 255 (360)
T ss_pred cHHHHHHHHHHCCCEEEEEeCCCCHHHHHh--cCCCEEEEeCCCC--ChH----H-HHHHHHHHHHHHHc--CCeEEEEC
Confidence 557899999999999999998866544432 2699999999963 231 1 13556777777764 49999999
Q ss_pred hhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCcccc
Q psy12875 125 LGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQ 204 (308)
Q Consensus 125 ~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~~~ 204 (308)
+|||+|+.+ +||++.+.... + +|...
T Consensus 256 lG~QlLa~a-~Gg~v~kl~~g---------h--------------------------------------------~G~~~ 281 (360)
T PRK12564 256 LGHQLLALA-LGAKTYKMKFG---------H--------------------------------------------RGANH 281 (360)
T ss_pred HHHHHHHHH-hCCcEeccCCC---------c--------------------------------------------cCCce
Confidence 999999999 99987532110 0 01000
Q ss_pred eeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEe-cCCCceEEEEEEecCC
Q psy12875 205 QVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLS-KYKSWEFVSTVEHKEY 283 (308)
Q Consensus 205 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s-~~~~~~~v~ai~~~~~ 283 (308)
.+.. ... .+ ...+.++|+++|++.. +|+++++++++ +|+. |++++++++
T Consensus 282 pv~~-------~~~--------~~-------~~its~~H~~~V~~~~-----lp~~l~v~a~~~~Dg~---iegi~~~~~ 331 (360)
T PRK12564 282 PVKD-------LET--------GK-------VEITSQNHGFAVDEDS-----LPANLEVTHVNLNDGT---VEGLRHKDL 331 (360)
T ss_pred eeEE-------CCC--------Cc-------EEEEecCcccEEcccc-----cCCceEEEEEeCCCCc---EEEEEECCC
Confidence 1110 000 00 0124779999997544 78899999998 4554 889999999
Q ss_pred CEEEEeecCCccCccc
Q psy12875 284 PIVGIQFHPEKNAYEW 299 (308)
Q Consensus 284 p~~GvQFHPE~~~~~~ 299 (308)
|+||+|||||+...++
T Consensus 332 pi~gVQfHPE~~~gp~ 347 (360)
T PRK12564 332 PAFSVQYHPEASPGPH 347 (360)
T ss_pred CEEEEEeCCcCCCCCC
Confidence 9999999999987654
No 31
>PRK00074 guaA GMP synthase; Reviewed
Probab=99.90 E-value=3.4e-23 Score=203.34 Aligned_cols=166 Identities=20% Similarity=0.326 Sum_probs=117.7
Q ss_pred cchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEE
Q psy12875 43 SYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLG 122 (308)
Q Consensus 43 ~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlG 122 (308)
+| ...+.++|+++|+.+.++|++.+.++++.. ++||||+|||+.++... .+.. + .+...+ .++||||
T Consensus 14 q~-~~li~r~lrelg~~~~v~p~~~~~~~l~~~--~~dgIIlsGGp~sv~~~-~~p~----~---~~~i~~--~~~PvLG 80 (511)
T PRK00074 14 QY-TQLIARRVRELGVYSEIVPYDISAEEIRAF--NPKGIILSGGPASVYEE-GAPR----A---DPEIFE--LGVPVLG 80 (511)
T ss_pred Cc-HHHHHHHHHHCCCeEEEEECCCCHHHHhcc--CCCEEEECCCCcccccC-CCcc----c---cHHHHh--CCCCEEE
Confidence 45 357889999999999999987765544332 56999999998654331 1111 1 122334 3499999
Q ss_pred echhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCcc
Q psy12875 123 VCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCK 202 (308)
Q Consensus 123 IC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~ 202 (308)
||+|||+|+.+ +||++.+... +-.|+- .+
T Consensus 81 IC~G~QlLa~~-lGG~V~~~~~-------------------------------~e~G~~------------~i------- 109 (511)
T PRK00074 81 ICYGMQLMAHQ-LGGKVERAGK-------------------------------REYGRA------------EL------- 109 (511)
T ss_pred ECHHHHHHHHH-hCCeEEecCC-------------------------------cccceE------------EE-------
Confidence 99999999999 9997642110 000000 11
Q ss_pred cceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEecC
Q psy12875 203 VQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKE 282 (308)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~~ 282 (308)
.. ..+++||++++..+. ++++|++.|.. +|++++++|+++++. ++++++.+
T Consensus 110 ----~i-------~~~~~Lf~~l~~~~~--------v~~~H~d~V~~-------lp~g~~vlA~s~~~~---v~ai~~~~ 160 (511)
T PRK00074 110 ----EV-------DNDSPLFKGLPEEQD--------VWMSHGDKVTE-------LPEGFKVIASTENCP---IAAIANEE 160 (511)
T ss_pred ----EE-------cCCChhhhcCCCceE--------EEEECCeEEEe-------cCCCcEEEEEeCCCC---EEEEEeCC
Confidence 11 135678888876544 48899999964 899999999998876 78999988
Q ss_pred CCEEEEeecCCccCcccCC
Q psy12875 283 YPIVGIQFHPEKNAYEWTE 301 (308)
Q Consensus 283 ~p~~GvQFHPE~~~~~~~~ 301 (308)
.++||+|||||++.++.|.
T Consensus 161 ~~i~GvQFHPE~~~t~~G~ 179 (511)
T PRK00074 161 RKFYGVQFHPEVTHTPQGK 179 (511)
T ss_pred CCEEEEeCCCCcCCchhHH
Confidence 8999999999999987764
No 32
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional
Probab=99.90 E-value=3.1e-23 Score=181.48 Aligned_cols=184 Identities=21% Similarity=0.319 Sum_probs=115.6
Q ss_pred HHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHH-HHHHHHHHHHHHcCCCccEEEech
Q psy12875 47 ASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAG-RQILHLVDKINEEGVTFPVLGVCL 125 (308)
Q Consensus 47 ~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~-~~~~e~~~~~~~~g~~~PvlGIC~ 125 (308)
.++.++|+.+|+++..++. ++ .++++|+||+||+++ ... ...... +.+.+.++++.++ ++|+||||+
T Consensus 15 ~sl~~al~~~g~~v~vv~~---~~----~l~~~d~iIlPG~g~-~~~--~~~~l~~~gl~~~i~~~~~~--~~pvlGICl 82 (210)
T CHL00188 15 HSVSRAIQQAGQQPCIINS---ES----ELAQVHALVLPGVGS-FDL--AMKKLEKKGLITPIKKWIAE--GNPFIGICL 82 (210)
T ss_pred HHHHHHHHHcCCcEEEEcC---HH----HhhhCCEEEECCCCc-hHH--HHHHHHHCCHHHHHHHHHHc--CCCEEEECH
Confidence 4778999999999887753 22 356799999999774 111 111111 1455667777774 499999999
Q ss_pred hhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCcccce
Q psy12875 126 GFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQ 205 (308)
Q Consensus 126 G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~~~~ 205 (308)
|||+|+.. .++... .++.+.+|..+... .....++|.+||- ++.....+
T Consensus 83 G~Qll~~~-~~~~~~----------~glg~~~G~v~~~~----~~~~~~~p~~Gw~------------~v~~~~~~---- 131 (210)
T CHL00188 83 GLHLLFET-SEEGKE----------EGLGIYKGQVKRLK----HSPVKVIPHMGWN------------RLECQNSE---- 131 (210)
T ss_pred HHHHHhhc-cccCCc----------CCccceeEEEEECC----CCCCCccCccCCc------------cceecCCc----
Confidence 99999988 554332 23555555443220 0112356777764 33322100
Q ss_pred eeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCC-ceEEEEEEecCCC
Q psy12875 206 VNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKS-WEFVSTVEHKEYP 284 (308)
Q Consensus 206 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~-~~~v~ai~~~~~p 284 (308)
....++.+|++++..+. ++++|++.+.+ ++.+.++.+..++ ..++++++.. +
T Consensus 132 --------~~~~~~~lf~~l~~~~~--------v~~~HS~~v~p---------~~~~~l~~t~~~~~~~~v~a~~~~--~ 184 (210)
T CHL00188 132 --------CQNSEWVNWKAWPLNPW--------AYFVHSYGVMP---------KSQACATTTTFYGKQQMVAAIEYD--N 184 (210)
T ss_pred --------ccccCChhhcCCCCCCE--------EEEeCccEecC---------CCCceEEEEEecCCcceEEEEecC--C
Confidence 00112568998887655 49999998853 2334455544332 4579999964 7
Q ss_pred EEEEeecCCccCcccCC
Q psy12875 285 IVGIQFHPEKNAYEWTE 301 (308)
Q Consensus 285 ~~GvQFHPE~~~~~~~~ 301 (308)
+||+|||||++ ++.|.
T Consensus 185 i~GvQFHPE~s-~~~G~ 200 (210)
T CHL00188 185 IFAMQFHPEKS-GEFGL 200 (210)
T ss_pred EEEEecCCccc-cHhHH
Confidence 99999999999 66654
No 33
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit. This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.
Probab=99.90 E-value=1.4e-22 Score=189.61 Aligned_cols=159 Identities=18% Similarity=0.352 Sum_probs=109.2
Q ss_pred hHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEec
Q psy12875 45 IAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVC 124 (308)
Q Consensus 45 i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC 124 (308)
+..+++++|++.|+.++++|++.+.+++.. ..+|||+++||+.+ + .......+.++++.+ ++||||||
T Consensus 183 ~k~ni~~~L~~~G~~v~vvp~~~~~~~i~~--~~pDGIiLSgGPgd--p-----~~~~~~i~~i~~~~~---~~PILGIC 250 (358)
T TIGR01368 183 VKQNILRRLVKRGCEVTVVPYDTDAEEIKK--YNPDGIFLSNGPGD--P-----AAVEPAIETIRKLLE---KIPIFGIC 250 (358)
T ss_pred cHHHHHHHHHHCCCEEEEEcCCCCHHHHHh--hCCCEEEECCCCCC--H-----HHHHHHHHHHHHHHc---CCCEEEEC
Confidence 446899999999999999998765443322 24699999999632 2 112345566676664 49999999
Q ss_pred hhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCcccc
Q psy12875 125 LGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQ 204 (308)
Q Consensus 125 ~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~~~ 204 (308)
+|||+|+.+ +||++.+... .+ +|...
T Consensus 251 lG~QlLa~a-~Gg~v~kl~~---------gh--------------------------------------------~G~nh 276 (358)
T TIGR01368 251 LGHQLLALA-FGAKTYKMKF---------GH--------------------------------------------RGGNH 276 (358)
T ss_pred HHHHHHHHH-hCCceeccCc---------Cc--------------------------------------------CCCce
Confidence 999999999 9998753211 00 01000
Q ss_pred eeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCC-CCeEEEEEe-cCCCceEEEEEEecC
Q psy12875 205 QVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLT-ETWNILTLS-KYKSWEFVSTVEHKE 282 (308)
Q Consensus 205 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~-~~~~via~s-~~~~~~~v~ai~~~~ 282 (308)
.+.. .....++ .+.++|+++|++++ ++ +++++++++ +|+. |+++++++
T Consensus 277 pV~~-------~~~~~v~---------------itsqnH~~aV~~~~-----l~~~~l~vta~~~nDg~---Vegi~h~~ 326 (358)
T TIGR01368 277 PVKD-------LITGRVE---------------ITSQNHGYAVDPDS-----LPAGDLEVTHVNLNDGT---VEGIRHKD 326 (358)
T ss_pred eeEE-------CCCCcEE---------------EeecCCCcEEcccc-----cCCCceEEEEEECCCCc---EEEEEECC
Confidence 0100 0011111 24679999998654 45 689999998 4655 88999999
Q ss_pred CCEEEEeecCCccCccc
Q psy12875 283 YPIVGIQFHPEKNAYEW 299 (308)
Q Consensus 283 ~p~~GvQFHPE~~~~~~ 299 (308)
+|+||||||||+...++
T Consensus 327 ~pi~gVQfHPE~~~gp~ 343 (358)
T TIGR01368 327 LPVFSVQYHPEASPGPH 343 (358)
T ss_pred CCEEEEEECCCCCCCCC
Confidence 99999999999986543
No 34
>PRK07567 glutamine amidotransferase; Provisional
Probab=99.90 E-value=9e-23 Score=182.54 Aligned_cols=170 Identities=21% Similarity=0.326 Sum_probs=110.6
Q ss_pred HHHHHHHHHcCCe---EEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCC-chhHHHH----HHHHHHHHHHHcCCCc
Q psy12875 47 ASYVKNIEAAGAR---VVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPN-GYADAGR----QILHLVDKINEEGVTF 118 (308)
Q Consensus 47 ~~~~~~l~~aG~~---~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~-~~~~~~~----~~~e~~~~~~~~g~~~ 118 (308)
..|.+++++.|.. +..++...... .+..++++||||++||+.+.+... ....+.. .+.+.++.+.+. ++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dgvIi~Gg~~~~~d~~~~~~pw~~~~~~~i~~~i~~~~~~--~~ 94 (242)
T PRK07567 18 AEYAAFLRYTGLDPAELRRIRLDREPL-PDLDLDDYSGVIVGGSPFNVSDPAESKSPWQRRVEAELSGLLDEVVAR--DF 94 (242)
T ss_pred chHHHHHHhcCCCccceEEEecccCCC-CCCCHhhccEEEEcCCCCcCCCCCCccchHHHHHHHHHHHHHHHHHhc--CC
Confidence 4567888888865 44444333211 111467899999999986554310 0122222 334455555564 49
Q ss_pred cEEEechhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875 119 PVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFR 198 (308)
Q Consensus 119 PvlGIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~ 198 (308)
||||||+|||+|+.+ +||++.+. . |. -+|+- .+
T Consensus 95 PvLGIC~G~Qlla~a-~GG~V~~~-~-------------g~-----------------e~G~~------------~v--- 127 (242)
T PRK07567 95 PFLGACYGVGTLGHH-QGGVVDRT-Y-------------GE-----------------PVGAV------------TV--- 127 (242)
T ss_pred CEEEEchhHHHHHHH-cCCEEecC-C-------------CC-----------------cCccE------------EE---
Confidence 999999999999999 99987421 0 00 00000 11
Q ss_pred CCcccceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEE
Q psy12875 199 KSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTV 278 (308)
Q Consensus 199 ~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai 278 (308)
.+. .....+++|.+++..+.+ +++|++.|.. +|++++++|+|+++. ++|+
T Consensus 128 --------~l~----~~g~~~~l~~~~~~~~~~--------~~~H~d~V~~-------lp~~~~vlA~s~~~~---vqa~ 177 (242)
T PRK07567 128 --------SLT----DAGRADPLLAGLPDTFTA--------FVGHKEAVSA-------LPPGAVLLATSPTCP---VQMF 177 (242)
T ss_pred --------EEC----CccCCChhhcCCCCceEE--------Eeehhhhhhh-------CCCCCEEEEeCCCCC---EEEE
Confidence 110 112356788888776653 8899999863 899999999998887 6799
Q ss_pred EecCCCEEEEeecCCccCc
Q psy12875 279 EHKEYPIVGIQFHPEKNAY 297 (308)
Q Consensus 279 ~~~~~p~~GvQFHPE~~~~ 297 (308)
++++ ++||+|||||++..
T Consensus 178 ~~~~-~~~gvQfHPE~~~~ 195 (242)
T PRK07567 178 RVGE-NVYATQFHPELDAD 195 (242)
T ss_pred EeCC-CEEEEEeCCcCCHH
Confidence 9875 69999999999854
No 35
>PRK13566 anthranilate synthase; Provisional
Probab=99.89 E-value=1.1e-22 Score=205.67 Aligned_cols=171 Identities=20% Similarity=0.328 Sum_probs=122.9
Q ss_pred CCCccchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCc
Q psy12875 39 PNYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTF 118 (308)
Q Consensus 39 ~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~ 118 (308)
+.++++ ...+.++|++.|+++.++++..+.+.++ ..++||||+.||+.+ +. ++ .+.++++.+.++ ++
T Consensus 533 D~~dsf-~~~l~~~Lr~~G~~v~vv~~~~~~~~~~--~~~~DgVVLsgGpgs--p~-d~-----~~~~lI~~a~~~--~i 599 (720)
T PRK13566 533 DHEDSF-VHTLANYFRQTGAEVTTVRYGFAEEMLD--RVNPDLVVLSPGPGR--PS-DF-----DCKATIDAALAR--NL 599 (720)
T ss_pred ECCCch-HHHHHHHHHHCCCEEEEEECCCChhHhh--hcCCCEEEECCCCCC--hh-hC-----CcHHHHHHHHHC--CC
Confidence 445556 4588999999999999999876544332 247999999777532 21 11 245666667764 49
Q ss_pred cEEEechhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875 119 PVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFR 198 (308)
Q Consensus 119 PvlGIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~ 198 (308)
||||||+|||+|+.+ +||++.+... |
T Consensus 600 PILGIClG~QlLa~a-lGG~V~~~~~-------------------------------~---------------------- 625 (720)
T PRK13566 600 PIFGVCLGLQAIVEA-FGGELGQLAY-------------------------------P---------------------- 625 (720)
T ss_pred cEEEEehhHHHHHHH-cCCEEEECCC-------------------------------C----------------------
Confidence 999999999999999 9998743110 0
Q ss_pred CCcccceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEE
Q psy12875 199 KSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTV 278 (308)
Q Consensus 199 ~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai 278 (308)
.+|....+.+ ..+++||++++.++. ++++|++.+.... +|++++++|+++++. |+++
T Consensus 626 ~~G~~~~V~v-------~~~~~Lf~~lp~~~~--------v~~~Hs~~v~~~~-----Lp~~~~vlA~s~dg~---V~ai 682 (720)
T PRK13566 626 MHGKPSRIRV-------RGPGRLFSGLPEEFT--------VGRYHSLFADPET-----LPDELLVTAETEDGV---IMAI 682 (720)
T ss_pred ccCCceEEEE-------CCCCchhhcCCCCCE--------EEEecceeEeecc-----CCCceEEEEEeCCCc---EEEE
Confidence 0111111211 124578888877665 4999999886433 899999999998875 8899
Q ss_pred EecCCCEEEEeecCCccCccc
Q psy12875 279 EHKEYPIVGIQFHPEKNAYEW 299 (308)
Q Consensus 279 ~~~~~p~~GvQFHPE~~~~~~ 299 (308)
+++++|+||+|||||+..+..
T Consensus 683 ~~~~~pi~GVQFHPE~i~t~~ 703 (720)
T PRK13566 683 EHKTLPVAAVQFHPESIMTLG 703 (720)
T ss_pred EECCCCEEEEeccCeeCCcCC
Confidence 999889999999999988743
No 36
>PRK06490 glutamine amidotransferase; Provisional
Probab=99.89 E-value=1.1e-22 Score=181.50 Aligned_cols=160 Identities=18% Similarity=0.177 Sum_probs=110.7
Q ss_pred HHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhh
Q psy12875 48 SYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGF 127 (308)
Q Consensus 48 ~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~ 127 (308)
.+.++|++.|.++.++....+. .++..++++||+|++||+.+++. ...+...+.++++++.+. ++|+||||+|+
T Consensus 23 ~l~~~l~~~g~~~~v~~~~~~~-~~p~~l~~~dgvii~Ggp~~~~d---~~~wi~~~~~~i~~~~~~--~~PvLGIC~G~ 96 (239)
T PRK06490 23 RVGQLLQERGYPLDIRRPRLGD-PLPDTLEDHAGAVIFGGPMSAND---PDDFIRREIDWISVPLKE--NKPFLGICLGA 96 (239)
T ss_pred HHHHHHHHCCCceEEEeccCCC-CCCCcccccCEEEEECCCCCCCC---CchHHHHHHHHHHHHHHC--CCCEEEECHhH
Confidence 5688999999988877654332 22334778999999999865544 334555677888888874 49999999999
Q ss_pred hHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCcccceee
Q psy12875 128 ELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVN 207 (308)
Q Consensus 128 Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~~~~~~ 207 (308)
|+|+.+ +||++.+... |. +-+|+. .+..
T Consensus 97 Qlla~a-lGG~V~~~~~-------------G~----------------~e~G~~------------~i~~---------- 124 (239)
T PRK06490 97 QMLARH-LGARVAPHPD-------------GR----------------VEIGYY------------PLRP---------- 124 (239)
T ss_pred HHHHHH-cCCEeecCCC-------------CC----------------CccceE------------EeEE----------
Confidence 999999 9998743210 00 001110 1111
Q ss_pred ecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEecCCCEEE
Q psy12875 208 LNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEYPIVG 287 (308)
Q Consensus 208 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~~~p~~G 287 (308)
....+++..++. .++++|++.+. +|++++++|+|++|. ++++++++ ++||
T Consensus 125 --------~~~~~~~~~~~~----------~~~~~H~d~~~--------lP~~~~~LA~s~~~~---~qa~~~~~-~v~g 174 (239)
T PRK06490 125 --------TEAGRALMHWPE----------MVYHWHREGFD--------LPAGAELLATGDDFP---NQAFRYGD-NAWG 174 (239)
T ss_pred --------CCCcccccCCCC----------EEEEECCcccc--------CCCCCEEEEeCCCCC---eEEEEeCC-CEEE
Confidence 012223333332 24889998743 899999999999988 66999976 7999
Q ss_pred EeecCCcc
Q psy12875 288 IQFHPEKN 295 (308)
Q Consensus 288 vQFHPE~~ 295 (308)
+|||||++
T Consensus 175 ~QfHPE~~ 182 (239)
T PRK06490 175 LQFHPEVT 182 (239)
T ss_pred EeeCccCC
Confidence 99999998
No 37
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=99.89 E-value=1.1e-22 Score=175.32 Aligned_cols=165 Identities=21% Similarity=0.273 Sum_probs=115.2
Q ss_pred HHHHHHHHHHcC---CeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEE
Q psy12875 46 AASYVKNIEAAG---ARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLG 122 (308)
Q Consensus 46 ~~~~~~~l~~aG---~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlG 122 (308)
...+.++++++| .++.++++..... ...++++||||+|||..+.+. ....+.+.+.++++.+.++ ++|++|
T Consensus 13 ~~~~~~~l~~~g~~~~~~~~~~~~~~~~--~~~~~~~dgvil~Gg~~~~~~--~~~~~~~~~~~~i~~~~~~--~~pilg 86 (188)
T cd01741 13 PGLFEDLLREAGAETIEIDVVDVYAGEL--LPDLDDYDGLVILGGPMSVDE--DDYPWLKKLKELIRQALAA--GKPVLG 86 (188)
T ss_pred cchHHHHHHhcCCCCceEEEEecCCCCC--CCCcccCCEEEECCCCccCCc--cCChHHHHHHHHHHHHHHC--CCCEEE
Confidence 346789999999 5777777655432 235789999999999865411 1223445677778887774 499999
Q ss_pred echhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCcc
Q psy12875 123 VCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCK 202 (308)
Q Consensus 123 IC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~ 202 (308)
||+|+|+|+.+ +||++.+.... +..|+- ++
T Consensus 87 iC~G~q~l~~~-lGG~v~~~~~~------------------------------~~~g~~------------~v------- 116 (188)
T cd01741 87 ICLGHQLLARA-LGGKVGRNPKG------------------------------WEIGWF------------PV------- 116 (188)
T ss_pred ECccHHHHHHH-hCCEEecCCCc------------------------------ceeEEE------------EE-------
Confidence 99999999999 99987432110 011110 11
Q ss_pred cceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEecC
Q psy12875 203 VQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKE 282 (308)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~~ 282 (308)
.+. .....++++++++..+. ++++|++.|.. +|++++++|+++++. +++++.+
T Consensus 117 ----~~~----~~~~~~~l~~~~~~~~~--------v~~~H~~~v~~-------lp~~~~~la~~~~~~---v~~~~~~- 169 (188)
T cd01741 117 ----TLT----EAGKADPLFAGLPDEFP--------VFHWHGDTVVE-------LPPGAVLLASSEACP---NQAFRYG- 169 (188)
T ss_pred ----Eec----cccccCchhhcCCCcce--------EEEEeccChhh-------CCCCCEEeecCCCCC---cceEEec-
Confidence 110 01224567777766554 48999999974 899999999998887 6699987
Q ss_pred CCEEEEeecCC
Q psy12875 283 YPIVGIQFHPE 293 (308)
Q Consensus 283 ~p~~GvQFHPE 293 (308)
.++||+|||||
T Consensus 170 ~~~~g~QfHPE 180 (188)
T cd01741 170 DRALGLQFHPE 180 (188)
T ss_pred CCEEEEccCch
Confidence 47999999999
No 38
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=99.89 E-value=2.2e-22 Score=202.99 Aligned_cols=172 Identities=19% Similarity=0.286 Sum_probs=120.7
Q ss_pred CCCccchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCc
Q psy12875 39 PNYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTF 118 (308)
Q Consensus 39 ~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~ 118 (308)
+.+++++ .++.++|++.|+.+.++++....+ +. ...++||||+.||+.+..+ + +..+.++++.+. ++
T Consensus 523 D~gds~~-~~l~~~L~~~G~~v~vv~~~~~~~-~~-~~~~~DgLILsgGPGsp~d---~-----~~~~~I~~~~~~--~i 589 (717)
T TIGR01815 523 DHEDSFV-HTLANYLRQTGASVTTLRHSHAEA-AF-DERRPDLVVLSPGPGRPAD---F-----DVAGTIDAALAR--GL 589 (717)
T ss_pred ECCChhH-HHHHHHHHHCCCeEEEEECCCChh-hh-hhcCCCEEEEcCCCCCchh---c-----ccHHHHHHHHHC--CC
Confidence 3445664 588999999999999888764432 22 1357999999777533221 1 334556666664 49
Q ss_pred cEEEechhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875 119 PVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFR 198 (308)
Q Consensus 119 PvlGIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~ 198 (308)
||||||+|||+|+.+ +||++.+.. .|..
T Consensus 590 PvLGICLG~QlLa~a-~GG~V~~~~-------------------------------~p~~-------------------- 617 (717)
T TIGR01815 590 PVFGVCLGLQGMVEA-FGGALDVLP-------------------------------EPVH-------------------- 617 (717)
T ss_pred CEEEECHHHHHHhhh-hCCEEEECC-------------------------------CCee--------------------
Confidence 999999999999999 999874211 0111
Q ss_pred CCcccceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEE
Q psy12875 199 KSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTV 278 (308)
Q Consensus 199 ~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai 278 (308)
|....+.. ...+++|.+++..+. +++||++.+.... +|++++++|+++++. ++|+
T Consensus 618 --G~~~~V~~-------~~~~~Lf~~lp~~~~--------v~~~HS~~~~~~~-----LP~~~~vlA~s~d~~---v~Ai 672 (717)
T TIGR01815 618 --GKASRIRV-------LGPDALFAGLPERLT--------VGRYHSLFARRDR-----LPAELTVTAESADGL---IMAI 672 (717)
T ss_pred --CcceEEEE-------CCCChhhhcCCCCCE--------EEEECCCCccccc-----CCCCeEEEEEeCCCc---EEEE
Confidence 11111111 124568888877665 4999999875432 899999999997765 8899
Q ss_pred EecCCCEEEEeecCCccCcccC
Q psy12875 279 EHKEYPIVGIQFHPEKNAYEWT 300 (308)
Q Consensus 279 ~~~~~p~~GvQFHPE~~~~~~~ 300 (308)
++++.|+||+|||||+..++.|
T Consensus 673 ~~~~~~i~GVQFHPEsi~T~sg 694 (717)
T TIGR01815 673 EHRRLPLAAVQFHPESIMTLDG 694 (717)
T ss_pred EECCCCEEEEEeCCeeCCccCc
Confidence 9999899999999999877654
No 39
>PRK07053 glutamine amidotransferase; Provisional
Probab=99.88 E-value=6e-22 Score=176.31 Aligned_cols=166 Identities=20% Similarity=0.220 Sum_probs=113.2
Q ss_pred HHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhh
Q psy12875 48 SYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGF 127 (308)
Q Consensus 48 ~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~ 127 (308)
++.++|++.|..+.+++....+. ....+.++||||++||+.+.... ....+...+.++++++.+.+ +|+||||+|+
T Consensus 18 ~i~~~L~~~g~~~~v~~~~~~~~-~~~~~~~~d~lii~Ggp~~~~d~-~~~p~~~~~~~~i~~~~~~~--~PvlGIC~G~ 93 (234)
T PRK07053 18 SFEQVLGARGYRVRYVDVGVDDL-ETLDALEPDLLVVLGGPIGVYDD-ELYPFLAPEIALLRQRLAAG--LPTLGICLGA 93 (234)
T ss_pred HHHHHHHHCCCeEEEEecCCCcc-CCCCccCCCEEEECCCCCCCCCC-CcCCcHHHHHHHHHHHHHCC--CCEEEECccH
Confidence 45789999999988887643321 11245689999999998655432 11234456778888888754 9999999999
Q ss_pred hHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCcccceee
Q psy12875 128 ELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVN 207 (308)
Q Consensus 128 Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~~~~~~ 207 (308)
|+|+.+ +||++.+.. .+-+|+- ++...
T Consensus 94 Qlla~a-lGg~V~~~~-------------------------------~~e~G~~------------~i~~t--------- 120 (234)
T PRK07053 94 QLIARA-LGARVYPGG-------------------------------QKEIGWA------------PLTLT--------- 120 (234)
T ss_pred HHHHHH-cCCcEecCC-------------------------------CCeEeEE------------EEEEe---------
Confidence 999999 999874210 0111221 12111
Q ss_pred ecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEecCCCEEE
Q psy12875 208 LNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEYPIVG 287 (308)
Q Consensus 208 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~~~p~~G 287 (308)
+....+++. +++..+. ++++|++.+. +|++++++|+|+.|. +++++.++ ++||
T Consensus 121 ------~~g~~~pl~-~~~~~~~--------~~~~H~d~~~--------lP~ga~~La~s~~~~---~qaf~~g~-~~~g 173 (234)
T PRK07053 121 ------DAGRASPLR-HLGAGTP--------VLHWHGDTFD--------LPEGATLLASTPACR---HQAFAWGN-HVLA 173 (234)
T ss_pred ------ccccCChhh-cCCCcce--------EEEEeCCEEe--------cCCCCEEEEcCCCCC---eeEEEeCC-CEEE
Confidence 111234443 3444333 4889998875 899999999999988 55999864 7999
Q ss_pred EeecCCccCc
Q psy12875 288 IQFHPEKNAY 297 (308)
Q Consensus 288 vQFHPE~~~~ 297 (308)
+|||||++..
T Consensus 174 ~QfHpE~~~~ 183 (234)
T PRK07053 174 LQFHPEARED 183 (234)
T ss_pred EeeCccCCHH
Confidence 9999999854
No 40
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.88 E-value=1.4e-22 Score=177.53 Aligned_cols=180 Identities=22% Similarity=0.327 Sum_probs=105.7
Q ss_pred HHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHH--HHHHHHHH-HHHcCCCccEEEe
Q psy12875 47 ASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGR--QILHLVDK-INEEGVTFPVLGV 123 (308)
Q Consensus 47 ~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~--~~~e~~~~-~~~~g~~~PvlGI 123 (308)
.++.++|++.|+++.+. +..+.+ .++++||||+||+++... +....+ .+.+.+++ +.+. ++|+|||
T Consensus 15 ~s~~~al~~~g~~~~v~-~~~~~~----~l~~~d~lIlpG~~~~~~----~~~~l~~~~~~~~~~~~~~~~--~~PvlGi 83 (209)
T PRK13146 15 RSAAKALERAGAGADVV-VTADPD----AVAAADRVVLPGVGAFAD----CMRGLRAVGLGEAVIEAVLAA--GRPFLGI 83 (209)
T ss_pred HHHHHHHHHcCCCccEE-EECCHH----HhcCCCEEEECCCCcHHH----HHHHHHHCCcHHHHHHHHHhC--CCcEEEE
Confidence 57889999999854222 223333 468999999999864211 111112 12333333 3443 4999999
Q ss_pred chhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCccc
Q psy12875 124 CLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKV 203 (308)
Q Consensus 124 C~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~~ 203 (308)
|+|||+|+.++.++... .++.+.+|...... -.....+.|.+|
T Consensus 84 C~G~q~l~~~~~e~~~~----------~glg~l~g~v~~~~---~~~~~~~~p~~G------------------------ 126 (209)
T PRK13146 84 CVGMQLLFERGLEHGDT----------PGLGLIPGEVVRFQ---PDGPALKVPHMG------------------------ 126 (209)
T ss_pred CHHHHHHhhcccccCCC----------CCcceEeEEEEEcC---CCCCCCccCccC------------------------
Confidence 99999999874433211 12334333221100 000001233333
Q ss_pred ceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEecCC
Q psy12875 204 QQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEY 283 (308)
Q Consensus 204 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~~~ 283 (308)
|+.... .+++++|+++++.+. ++++|++.+.. .+ +..++|+++.+. + ++++..+ .
T Consensus 127 ----~~~v~~--~~~~~lf~~~~~~~~--------v~~~Hs~~v~~-------~~-~~~~la~s~~~~-~-~~a~~~~-~ 181 (209)
T PRK13146 127 ----WNTVDQ--TRDHPLFAGIPDGAR--------FYFVHSYYAQP-------AN-PADVVAWTDYGG-P-FTAAVAR-D 181 (209)
T ss_pred ----hHHeee--CCCChhccCCCCCCE--------EEEEeEEEEEc-------CC-CCcEEEEEcCCC-E-EEEEEec-C
Confidence 322211 246779999887665 49999999973 33 568899887654 2 5566544 5
Q ss_pred CEEEEeecCCccCcccC
Q psy12875 284 PIVGIQFHPEKNAYEWT 300 (308)
Q Consensus 284 p~~GvQFHPE~~~~~~~ 300 (308)
++||+|||||++ ++.|
T Consensus 182 ~i~GvQFHPE~s-~~~G 197 (209)
T PRK13146 182 NLFATQFHPEKS-QDAG 197 (209)
T ss_pred CEEEEEcCCccc-HHHH
Confidence 899999999998 4444
No 41
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=99.88 E-value=3.6e-22 Score=197.21 Aligned_cols=172 Identities=22% Similarity=0.286 Sum_probs=116.5
Q ss_pred CCCccchHHHHHHHHHHcCCe-EEEE-EcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCC
Q psy12875 39 PNYTSYIAASYVKNIEAAGAR-VVPI-LIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGV 116 (308)
Q Consensus 39 ~~~~~~i~~~~~~~l~~aG~~-~~~i-~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~ 116 (308)
+++++|. .++++.|++.|.. +.++ +.+.+.+.+. ..++||||++||+.+... .. ...+.++. .. .
T Consensus 6 dn~dsft-~nl~~~l~~~g~~~v~~~~~~~~~~~~~~--~~~~d~vIlsgGP~~p~~---~~----~~~~li~~-~~--~ 72 (534)
T PRK14607 6 DNYDSFT-YNIYQYIGELGPEEIEVVRNDEITIEEIE--ALNPSHIVISPGPGRPEE---AG----ISVEVIRH-FS--G 72 (534)
T ss_pred ECchhHH-HHHHHHHHHcCCCeEEEECCCCCCHHHHH--hcCCCEEEECCCCCChhh---CC----ccHHHHHH-hh--c
Confidence 4577886 4789999999986 4444 3333333221 236899999999743221 11 12333333 33 3
Q ss_pred CccEEEechhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCccc
Q psy12875 117 TFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTD 196 (308)
Q Consensus 117 ~~PvlGIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~ 196 (308)
++||||||+|||+|+.+ +||++.+....
T Consensus 73 ~~PvLGIClG~QlLa~a-~Gg~V~~~~~~--------------------------------------------------- 100 (534)
T PRK14607 73 KVPILGVCLGHQAIGYA-FGGKIVHAKRI--------------------------------------------------- 100 (534)
T ss_pred CCCEEEEcHHHHHHHHH-cCCeEecCCcc---------------------------------------------------
Confidence 48999999999999999 99987432100
Q ss_pred ccCCcccceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEE
Q psy12875 197 FRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVS 276 (308)
Q Consensus 197 ~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ 276 (308)
.+|....+.+ ..+.+|++++..+. ++++|++.+.... +|++++++|+++++. |+
T Consensus 101 --~~G~~~~v~~--------~~~~lf~~~~~~~~--------v~~~Hs~~v~~~~-----lp~~~~vlA~s~d~~---i~ 154 (534)
T PRK14607 101 --LHGKTSPIDH--------NGKGLFRGIPNPTV--------ATRYHSLVVEEAS-----LPECLEVTAKSDDGE---IM 154 (534)
T ss_pred --ccCCceeEEE--------CCCcchhcCCCCcE--------Eeeccchheeccc-----CCCCeEEEEEcCCCC---EE
Confidence 0111111111 24568888776554 4899999986432 899999999998887 88
Q ss_pred EEEecCCCEEEEeecCCccCcccCC
Q psy12875 277 TVEHKEYPIVGIQFHPEKNAYEWTE 301 (308)
Q Consensus 277 ai~~~~~p~~GvQFHPE~~~~~~~~ 301 (308)
+++++++|+||+|||||+..+++|.
T Consensus 155 a~~~~~~pi~GvQFHPE~~~t~~g~ 179 (534)
T PRK14607 155 GIRHKEHPIFGVQFHPESILTEEGK 179 (534)
T ss_pred EEEECCCCEEEEEeCCCCCCChhHH
Confidence 9999999999999999998887764
No 42
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=99.88 E-value=3.2e-22 Score=196.52 Aligned_cols=172 Identities=15% Similarity=0.183 Sum_probs=116.6
Q ss_pred CCCCccchHHHHHHHHHHcCCeEEEEEcCCChh-HHHHh-cCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcC
Q psy12875 38 YPNYTSYIAASYVKNIEAAGARVVPILIGQDRE-YYAEI-LTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEG 115 (308)
Q Consensus 38 ~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~-~~~~~-l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g 115 (308)
.+++++|. ..+++.|++.|..+.+++.+.... .++.. ..++|+||+.||+.+..+ . ....++++. .+
T Consensus 7 IDn~dsft-~nl~~~lr~~g~~v~V~~~~~~~~~~~~~l~~~~~~~IIlSpGPg~p~d---~-~~~~~i~~~----~~-- 75 (531)
T PRK09522 7 LDNIDSFT-YNLADQLRSNGHNVVIYRNHIPAQTLIERLATMSNPVLMLSPGPGVPSE---A-GCMPELLTR----LR-- 75 (531)
T ss_pred EeCCChHH-HHHHHHHHHCCCCEEEEECCCCCccCHHHHHhcCcCEEEEcCCCCChhh---C-CCCHHHHHH----Hh--
Confidence 35677885 578999999999988887543211 12222 125789999888643221 1 111223322 23
Q ss_pred CCccEEEechhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcc
Q psy12875 116 VTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDT 195 (308)
Q Consensus 116 ~~~PvlGIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v 195 (308)
.++||||||+|||+|+.+ +||++.+... ..
T Consensus 76 ~~iPILGIClG~QlLa~a-~GG~V~~~~~--------~~----------------------------------------- 105 (531)
T PRK09522 76 GKLPIIGICLGHQAIVEA-YGGYVGQAGE--------IL----------------------------------------- 105 (531)
T ss_pred cCCCEEEEcHHHHHHHHh-cCCEEEeCCc--------ee-----------------------------------------
Confidence 349999999999999999 9998753210 00
Q ss_pred cccCCcccceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEE
Q psy12875 196 DFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFV 275 (308)
Q Consensus 196 ~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v 275 (308)
+|....+.+ .+..+|.+++..+. +++||++.+.. +|++++++|++ ++. +
T Consensus 106 ----~G~~~~i~~--------~~~~lf~~~~~~~~--------v~~~Hs~~v~~-------lP~~l~vlA~s-d~~---v 154 (531)
T PRK09522 106 ----HGKASSIEH--------DGQAMFAGLTNPLP--------VARYHSLVGSN-------IPAGLTINAHF-NGM---V 154 (531)
T ss_pred ----eeeEEEEee--------cCCccccCCCCCcE--------EEEehheeccc-------CCCCcEEEEec-CCC---E
Confidence 111111211 24458888876665 49999999863 89999999974 444 8
Q ss_pred EEEEecCCCEEEEeecCCccCcccCC
Q psy12875 276 STVEHKEYPIVGIQFHPEKNAYEWTE 301 (308)
Q Consensus 276 ~ai~~~~~p~~GvQFHPE~~~~~~~~ 301 (308)
++++++++|+||+|||||+..|++|.
T Consensus 155 ~ai~~~~~~i~GVQFHPEs~~T~~G~ 180 (531)
T PRK09522 155 MAVRHDADRVCGFQFHPESILTTQGA 180 (531)
T ss_pred EEEEECCCCEEEEEecCccccCcchH
Confidence 89999999999999999999999985
No 43
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.88 E-value=2.7e-22 Score=174.45 Aligned_cols=175 Identities=24% Similarity=0.361 Sum_probs=108.1
Q ss_pred HHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCch-hHHHHHHHHHHHHHHHcCCCccEEEech
Q psy12875 47 ASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGY-ADAGRQILHLVDKINEEGVTFPVLGVCL 125 (308)
Q Consensus 47 ~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~-~~~~~~~~e~~~~~~~~g~~~PvlGIC~ 125 (308)
.+..++|++.|+.+.+++. .+ .++++|+|++|||+.. .. .. .-......+.++++.+++ +||||||+
T Consensus 12 ~~~~~~l~~~g~~v~v~~~---~~----~l~~~d~iiipG~~~~-~~--~~~~~~~~~~~~~i~~~~~~~--~pilGiC~ 79 (198)
T cd01748 12 RSVANALERLGAEVIITSD---PE----EILSADKLILPGVGAF-GD--AMANLRERGLIEALKEAIASG--KPFLGICL 79 (198)
T ss_pred HHHHHHHHHCCCeEEEEcC---hH----HhccCCEEEECCCCcH-HH--HHHHHHHcChHHHHHHHHHCC--CcEEEECH
Confidence 4678999999999888763 12 3678999999997531 00 00 001124567778877754 99999999
Q ss_pred hhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCc---c
Q psy12875 126 GFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSC---K 202 (308)
Q Consensus 126 G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g---~ 202 (308)
|||+|+.++.+|.... .+++.+| ++.+.+++ +
T Consensus 80 G~q~l~~~~~~g~~~~----------~lg~~~g-----------------------------------~v~~~~~~~~~~ 114 (198)
T cd01748 80 GMQLLFESSEEGGGTK----------GLGLIPG-----------------------------------KVVRFPASEGLK 114 (198)
T ss_pred HHHHhccccccCCCCC----------CCCCcce-----------------------------------EEEECCCCCCce
Confidence 9999998843443211 1222222 33332211 1
Q ss_pred cceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEecC
Q psy12875 203 VQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKE 282 (308)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~~ 282 (308)
...+++..... .+++++|++++..+. ++++|++.+. .++.+.++|+++++. + ++++. .+
T Consensus 115 ~~~~G~~~v~~--~~~~~lf~~l~~~~~--------v~~~Hs~~v~--------~~~~~~~la~s~~~~-~-~~~~~-~~ 173 (198)
T cd01748 115 VPHMGWNQLEI--TKESPLFKGIPDGSY--------FYFVHSYYAP--------PDDPDYILATTDYGG-K-FPAAV-EK 173 (198)
T ss_pred EEEeccceEEE--CCCChhhhCCCCCCe--------EEEEeEEEEe--------cCCcceEEEEecCCC-e-EEEEE-Ec
Confidence 11222221111 246678888877654 4899999986 344577899887654 3 33443 34
Q ss_pred CCEEEEeecCCccCcccC
Q psy12875 283 YPIVGIQFHPEKNAYEWT 300 (308)
Q Consensus 283 ~p~~GvQFHPE~~~~~~~ 300 (308)
.++||+|||||++ ++.|
T Consensus 174 ~~i~GvQFHPE~~-~~~g 190 (198)
T cd01748 174 DNIFGTQFHPEKS-GKAG 190 (198)
T ss_pred CCEEEEECCCccc-cHhH
Confidence 5899999999998 4444
No 44
>PLN02889 oxo-acid-lyase/anthranilate synthase
Probab=99.88 E-value=7.7e-22 Score=201.50 Aligned_cols=180 Identities=20% Similarity=0.274 Sum_probs=121.9
Q ss_pred CCCCccchHHHHHHHHHHc-CCeEEEEEcCCC-hhHHHH---hcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHH
Q psy12875 38 YPNYTSYIAASYVKNIEAA-GARVVPILIGQD-REYYAE---ILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKIN 112 (308)
Q Consensus 38 ~~~~~~~i~~~~~~~l~~a-G~~~~~i~~~~~-~~~~~~---~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~ 112 (308)
.+++|||.. ++++.|++. |..+++++.+.. .+++.. .+..+|+|||.||+- .|. .........+.+.++
T Consensus 87 IDnyDSfTy-NL~~~L~~~~g~~~~Vv~nd~~~~~~~~~~~~~~~~~d~IVlSPGPG--~P~--~~~d~Gi~~~~i~~~- 160 (918)
T PLN02889 87 IDNYDSYTY-NIYQELSIVNGVPPVVVRNDEWTWEEVYHYLYEEKAFDNIVISPGPG--SPT--CPADIGICLRLLLEC- 160 (918)
T ss_pred EeCCCchHH-HHHHHHHHhcCCCEEEEeCCCCCHHHHHhhhhcccCCCEEEECCCCC--Ccc--chHHHHHHHHHHHHh-
Confidence 467889964 688889887 999888887642 223322 145789999977762 231 111111123333332
Q ss_pred HcCCCccEEEechhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhC
Q psy12875 113 EEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSN 192 (308)
Q Consensus 113 ~~g~~~PvlGIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G 192 (308)
.++||||||+|||+|+.+ +||++.+..
T Consensus 161 ---~~iPILGICLGhQ~i~~~-~Gg~V~~~~------------------------------------------------- 187 (918)
T PLN02889 161 ---RDIPILGVCLGHQALGYV-HGARIVHAP------------------------------------------------- 187 (918)
T ss_pred ---CCCcEEEEcHHHHHHHHh-cCceEEeCC-------------------------------------------------
Confidence 238888888888888888 888763211
Q ss_pred CcccccCCcccceeeecccccCCCCCCcCccCCCh----hHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEec
Q psy12875 193 NDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPS----KYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSK 268 (308)
Q Consensus 193 ~~v~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~ 268 (308)
...||++..+.+ .++.+|++++. .+. +.+||+..|++.. +|++++++|+++
T Consensus 188 ----~~~HG~~s~I~h--------~~~~lF~glp~~~~~~f~--------v~RYHSL~v~~~~-----lP~~L~~~A~t~ 242 (918)
T PLN02889 188 ----EPVHGRLSEIEH--------NGCRLFDDIPSGRNSGFK--------VVRYHSLVIDAES-----LPKELVPIAWTS 242 (918)
T ss_pred ----CceeeeeeeEee--------cCchhhcCCCcCCCCCce--------EEeCCCcccccCC-----CCCceEEEEEEC
Confidence 011444444443 25669999986 354 4899999997543 889999999875
Q ss_pred CCC--------------------------------------------------ceEEEEEEecCCCEEEEeecCCccCcc
Q psy12875 269 YKS--------------------------------------------------WEFVSTVEHKEYPIVGIQFHPEKNAYE 298 (308)
Q Consensus 269 ~~~--------------------------------------------------~~~v~ai~~~~~p~~GvQFHPE~~~~~ 298 (308)
+.+ ...+||++|+.+|+||||||||+..++
T Consensus 243 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viMairH~~~P~~GVQfHPESi~t~ 322 (918)
T PLN02889 243 SSDTLSFLESQKSGLVPDAYESQIGQSGSSDPFSSKLKNGTSWPSSHSERMQNGKILMGIMHSTRPHYGLQFHPESIATC 322 (918)
T ss_pred CCcccccccccccccccccccccccccccccccccccccccccccccccccCCCCeeEEEEECCCceEEEEeCCccccCc
Confidence 411 026999999999999999999999998
Q ss_pred cCC
Q psy12875 299 WTE 301 (308)
Q Consensus 299 ~~~ 301 (308)
+|.
T Consensus 323 ~G~ 325 (918)
T PLN02889 323 YGR 325 (918)
T ss_pred hhH
Confidence 874
No 45
>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th
Probab=99.88 E-value=5.6e-22 Score=176.35 Aligned_cols=198 Identities=18% Similarity=0.196 Sum_probs=111.0
Q ss_pred HHHHHHHHcCCeEEEEEcCCChhHH---HHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEec
Q psy12875 48 SYVKNIEAAGARVVPILIGQDREYY---AEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVC 124 (308)
Q Consensus 48 ~~~~~l~~aG~~~~~i~~~~~~~~~---~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC 124 (308)
++..+..+.+..+.+++++.+..+. +..++.+|||+++||+.. + . .....+.++.+.+. ++|+||||
T Consensus 22 ~L~~a~~~~~~~v~~~~i~~~~~~~~~~~~~l~~~dgivl~GG~~~--~---~---~~~~~~~i~~~~~~--~~PvlGIC 91 (235)
T cd01746 22 ALKHAGIALGVKLEIKWIDSEDLEEENAEEALKGADGILVPGGFGI--R---G---VEGKILAIKYAREN--NIPFLGIC 91 (235)
T ss_pred HHHHHHHHcCCeeEEEEeChhhcCccchhhhhccCCEEEECCCCCC--c---c---hhhHHHHHHHHHHC--CceEEEEE
Confidence 3444444456677777665443222 246789999999999732 1 1 12445566666764 59999999
Q ss_pred hhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCcccc
Q psy12875 125 LGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQ 204 (308)
Q Consensus 125 ~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~~~ 204 (308)
+|||+|+.+ +||++....+.... ...++...|.. ..+. .. .+.+ ..|++.+. ...
T Consensus 92 lG~Q~l~~~-~g~~~~~~~~~~~~-----~~~~~~~~~~~-~~~~-~~-----~~~~--------~~~~~~rl----~~h 146 (235)
T cd01746 92 LGMQLAVIE-FARNVLGLPDANST-----EFDPDTPHPVV-DLMP-EQ-----KGVK--------DLGGTMRL----GAY 146 (235)
T ss_pred hHHHHHHHH-HHHHhcCCccCCcc-----ccCCCCCCCEE-EECc-cc-----cccc--------ccCccccc----Cce
Confidence 999999999 99886432221100 00111111100 0000 00 0000 00000000 001
Q ss_pred eeeecccccCCCCCCcCccCCChhHHHhhccCC-ceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEecCC
Q psy12875 205 QVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKP-LTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEY 283 (308)
Q Consensus 205 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~~~ 283 (308)
.+.+ .+++.+.+-++ ++. .++++|+++|+++.+... +.++++++|++.+.+ +|+++|.+++
T Consensus 147 ~v~i-------~~~s~l~~~~g--------~~~~~~n~~H~~~v~~~~~~~~-~~~~l~v~a~~~ddg--~ieaie~~~~ 208 (235)
T cd01746 147 PVIL-------KPGTLAHKYYG--------KDEVEERHRHRYEVNPEYVDEL-EEAGLRFSGTDPDGG--LVEIVELPDH 208 (235)
T ss_pred EEEE-------CCCChHHHHhC--------CCEEEEecCcccccCHHHHHHH-hhCCeEEEEEeCCCC--eEEEEEcCCC
Confidence 1111 23444443332 222 368899999987655321 378999999997433 5889999999
Q ss_pred CEE-EEeecCCccCcc
Q psy12875 284 PIV-GIQFHPEKNAYE 298 (308)
Q Consensus 284 p~~-GvQFHPE~~~~~ 298 (308)
||+ |+|||||.....
T Consensus 209 pf~lgvQ~HPE~~~~~ 224 (235)
T cd01746 209 PFFVGTQFHPEFKSRP 224 (235)
T ss_pred CcEEEEECCCCCcCCC
Confidence 987 999999987643
No 46
>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed
Probab=99.88 E-value=2.9e-21 Score=180.61 Aligned_cols=158 Identities=20% Similarity=0.351 Sum_probs=107.7
Q ss_pred hHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEec
Q psy12875 45 IAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVC 124 (308)
Q Consensus 45 i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC 124 (308)
+..+++++|++.|+.++++|++.+.+++.. .++|||+++||+.+ +. + .....+.++++.+ . +|+||||
T Consensus 177 ~k~ni~~~L~~~G~~v~vvp~~~~~~~i~~--~~~DGIiLsgGPgd--p~----~-~~~~~~~i~~~~~--~-~PvlGIC 244 (354)
T PRK12838 177 YKKSILRSLSKRGCKVTVLPYDTSLEEIKN--LNPDGIVLSNGPGD--PK----E-LQPYLPEIKKLIS--S-YPILGIC 244 (354)
T ss_pred HHHHHHHHHHHCCCeEEEEECCCCHHHHhh--cCCCEEEEcCCCCC--hH----H-hHHHHHHHHHHhc--C-CCEEEEC
Confidence 567899999999999999998766444432 37999999999742 21 1 1234556666654 3 8999999
Q ss_pred hhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCcccc
Q psy12875 125 LGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQ 204 (308)
Q Consensus 125 ~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~~~ 204 (308)
+|||+|+.+ +||++.+... .+ +|...
T Consensus 245 lG~QlLa~a-~Gg~v~kl~~---------gh--------------------------------------------~G~~h 270 (354)
T PRK12838 245 LGHQLIALA-LGADTEKLPF---------GH--------------------------------------------RGANH 270 (354)
T ss_pred HHHHHHHHH-hCCEEecCCC---------Cc--------------------------------------------cCCce
Confidence 999999999 9998753211 00 01111
Q ss_pred eeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCC-CCeEEEEEe-cCCCceEEEEEEecC
Q psy12875 205 QVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLT-ETWNILTLS-KYKSWEFVSTVEHKE 282 (308)
Q Consensus 205 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~-~~~~via~s-~~~~~~~v~ai~~~~ 282 (308)
.+.. ...+..+ .+.++|+++|.+.+ ++ .++++.+.+ .|+. |+|+++++
T Consensus 271 pV~~-------~~~~~~~---------------~ts~~H~~aV~~~s-----l~~~~l~v~a~~~~Dg~---Veai~~~~ 320 (354)
T PRK12838 271 PVID-------LTTGRVW---------------MTSQNHGYVVDEDS-----LDGTPLSVRFFNVNDGS---IEGLRHKK 320 (354)
T ss_pred EEEE-------CCCCeEE---------------EeccchheEecccc-----cCCCCcEEEEEECCCCe---EEEEEECC
Confidence 1110 0011111 13679999998644 55 458999886 4544 88999999
Q ss_pred CCEEEEeecCCccCcc
Q psy12875 283 YPIVGIQFHPEKNAYE 298 (308)
Q Consensus 283 ~p~~GvQFHPE~~~~~ 298 (308)
+|+||||||||+...+
T Consensus 321 ~pi~gVQfHPE~~~gp 336 (354)
T PRK12838 321 KPVLSVQFHPEAHPGP 336 (354)
T ss_pred CCEEEEEeCCCCCCCC
Confidence 9999999999997654
No 47
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.88 E-value=1.6e-21 Score=168.39 Aligned_cols=162 Identities=20% Similarity=0.241 Sum_probs=105.2
Q ss_pred HHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhh
Q psy12875 48 SYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGF 127 (308)
Q Consensus 48 ~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~ 127 (308)
++.++|+.+|++++.++. . ..++++|||++|||...... .......+.++++++.+++ +||+|||+|+
T Consensus 15 ~~~~~l~~~g~~~~~~~~---~----~~l~~~dgiii~GG~~~~~~---~~~~~~~~~~~i~~~~~~g--~PilGIC~G~ 82 (189)
T PRK13525 15 EHLAALEALGAEAVEVRR---P----EDLDEIDGLILPGGESTTMG---KLLRDFGLLEPLREFIASG--LPVFGTCAGM 82 (189)
T ss_pred HHHHHHHHCCCEEEEeCC---h----hHhccCCEEEECCCChHHHH---HHHHhccHHHHHHHHHHCC--CeEEEECHHH
Confidence 445789999999988763 2 24678999999999632110 1112234567788888754 9999999999
Q ss_pred hHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCcccceee
Q psy12875 128 ELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVN 207 (308)
Q Consensus 128 Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~~~~~~ 207 (308)
|+|+.+ +||... ..+++.|+ ++.+.+.+. .++
T Consensus 83 QlL~~~-~gg~~~----------~~lg~~~~-----------------------------------~v~~~~~g~--~~g 114 (189)
T PRK13525 83 ILLAKE-IEGYEQ----------EHLGLLDI-----------------------------------TVRRNAFGR--QVD 114 (189)
T ss_pred HHHHhh-cccCCC----------CceeeEEE-----------------------------------EEEEccCCC--cee
Confidence 999999 777521 12333322 222211111 011
Q ss_pred ecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEecCCCEEE
Q psy12875 208 LNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEYPIVG 287 (308)
Q Consensus 208 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~~~p~~G 287 (308)
. ...+.++.+.++++. ++++|++.|.. +|++++++|+++++ +.+++.+ ++||
T Consensus 115 ~-------~~~~~~~~~~~~~~~--------~~~~H~d~v~~-------lp~~~~vlA~~~~~----~~~~~~~--~~~g 166 (189)
T PRK13525 115 S-------FEAELDIKGLGEPFP--------AVFIRAPYIEE-------VGPGVEVLATVGGR----IVAVRQG--NILA 166 (189)
T ss_pred e-------EEecccccCCCCCeE--------EEEEeCceeec-------cCCCcEEEEEcCCE----EEEEEeC--CEEE
Confidence 0 012345555554444 48999999974 89999999998543 3466654 6999
Q ss_pred EeecCCccCc
Q psy12875 288 IQFHPEKNAY 297 (308)
Q Consensus 288 vQFHPE~~~~ 297 (308)
+|||||++..
T Consensus 167 ~QfHPE~~~~ 176 (189)
T PRK13525 167 TSFHPELTDD 176 (189)
T ss_pred EEeCCccCCC
Confidence 9999999764
No 48
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.87 E-value=1.8e-21 Score=168.94 Aligned_cols=173 Identities=21% Similarity=0.356 Sum_probs=103.0
Q ss_pred HHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHH-HHHHHHHHHHHHcCCCccEEEech
Q psy12875 47 ASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAG-RQILHLVDKINEEGVTFPVLGVCL 125 (308)
Q Consensus 47 ~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~-~~~~e~~~~~~~~g~~~PvlGIC~ 125 (308)
.|+.++|++.|+++.++. +++ .+.++|+||+||+++..+. +.... ..+.+.+++ . ++||||||+
T Consensus 14 ~s~~~~l~~~g~~~~~v~---~~~----~~~~~d~iIlPG~G~~~~~---~~~l~~~~l~~~i~~---~--~~PilGICl 78 (196)
T PRK13170 14 SSVKFAIERLGYEPVVSR---DPD----VILAADKLFLPGVGTAQAA---MDQLRERELIDLIKA---C--TQPVLGICL 78 (196)
T ss_pred HHHHHHHHHCCCeEEEEC---CHH----HhCCCCEEEECCCCchHHH---HHHHHHcChHHHHHH---c--CCCEEEECH
Confidence 367889999999888774 222 4678999999997642211 11111 123344433 2 489999999
Q ss_pred hhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCcccce
Q psy12875 126 GFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQ 205 (308)
Q Consensus 126 G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~~~~ 205 (308)
|||+|+.+ +++.... ..+.+.+|..... .......|.+||. +|..
T Consensus 79 G~Qll~~~-~~~~~~~---------~~lg~~~g~v~~~-----~~~~~~~p~~G~~------------~v~~-------- 123 (196)
T PRK13170 79 GMQLLGER-SEESGGV---------DCLGIIDGPVKKM-----TDFGLPLPHMGWN------------QVTP-------- 123 (196)
T ss_pred HHHHHhhh-cccCCCC---------CCcccccEEEEEC-----CCCCCCCCccccc------------eeEe--------
Confidence 99999999 5432100 1133333322210 0001234445542 2211
Q ss_pred eeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEecCCCE
Q psy12875 206 VNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEYPI 285 (308)
Q Consensus 206 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~~~p~ 285 (308)
.+++++++++++++. ++++|++.+ |++..++|+++++. .++++++. .++
T Consensus 124 ----------~~~~~l~~~l~~~~~--------v~~~Hs~~l----------p~~~~~la~s~~~~-~~~~~~~~--~~i 172 (196)
T PRK13170 124 ----------QAGHPLFQGIEDGSY--------FYFVHSYAM----------PVNEYTIAQCNYGE-PFSAAIQK--DNF 172 (196)
T ss_pred ----------CCCChhhhCCCcCCE--------EEEECeeec----------CCCCcEEEEecCCC-eEEEEEEc--CCE
Confidence 235678888876554 599999865 34456788877653 34445443 469
Q ss_pred EEEeecCCccCcccCC
Q psy12875 286 VGIQFHPEKNAYEWTE 301 (308)
Q Consensus 286 ~GvQFHPE~~~~~~~~ 301 (308)
||+|||||++. +.|.
T Consensus 173 ~G~QFHPE~~~-~~G~ 187 (196)
T PRK13170 173 FGVQFHPERSG-AAGA 187 (196)
T ss_pred EEEECCCCCcc-cccH
Confidence 99999999995 5553
No 49
>PRK08250 glutamine amidotransferase; Provisional
Probab=99.87 E-value=1.4e-21 Score=174.19 Aligned_cols=167 Identities=18% Similarity=0.152 Sum_probs=113.0
Q ss_pred HHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHH--HHHHHHHHHHHHcCCCccEEEech
Q psy12875 48 SYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAG--RQILHLVDKINEEGVTFPVLGVCL 125 (308)
Q Consensus 48 ~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~--~~~~e~~~~~~~~g~~~PvlGIC~ 125 (308)
.|..+++++|.++......... .++..++++||||++||+.+.....+-..+. ....++++++.+. ++|++|||+
T Consensus 16 ~~~~~~~~~g~~~~~~~~~~g~-~~p~~~~~~d~vii~GGp~~~~~~~~~~p~~~~~~~~~~i~~~~~~--~~PvlGIC~ 92 (235)
T PRK08250 16 AYLKWAENRGYDISYSRVYAGE-ALPENADGFDLLIVMGGPQSPRTTREECPYFDSKAEQRLINQAIKA--GKAVIGVCL 92 (235)
T ss_pred HHHHHHHHCCCeEEEEEccCCC-CCCCCccccCEEEECCCCCChhhccccccccchHHHHHHHHHHHHc--CCCEEEECh
Confidence 4567888899887776544332 2222456899999999975432100001112 3456778888874 499999999
Q ss_pred hhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCcccce
Q psy12875 126 GFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQ 205 (308)
Q Consensus 126 G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~~~~ 205 (308)
|+|+|+.+ +||++.+... +-+|+. +|...
T Consensus 93 G~Qlla~a-lGg~V~~~~~-------------------------------~e~G~~------------~v~lt------- 121 (235)
T PRK08250 93 GAQLIGEA-LGAKYEHSPE-------------------------------KEIGYF------------PITLT------- 121 (235)
T ss_pred hHHHHHHH-hCceeccCCC-------------------------------CceeEE------------EEEEc-------
Confidence 99999999 9998742210 112222 22211
Q ss_pred eeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEecCCCE
Q psy12875 206 VNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEYPI 285 (308)
Q Consensus 206 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~~~p~ 285 (308)
...+.++++.++++.+. ++++|++.+. +|++++++|+|+.|. +++++.++ ++
T Consensus 122 --------~~g~~d~l~~~~~~~~~--------v~~~H~d~~~--------lP~~a~~LA~s~~~~---~qa~~~~~-~~ 173 (235)
T PRK08250 122 --------EAGLKDPLLSHFGSTLT--------VGHWHNDMPG--------LTDQAKVLATSEGCP---RQIVQYSN-LV 173 (235)
T ss_pred --------cccccCchhhcCCCCcE--------EEEEecceec--------CCCCCEEEECCCCCC---ceEEEeCC-CE
Confidence 11235678888877664 4889998653 899999999999998 55999875 69
Q ss_pred EEEeecCCccC
Q psy12875 286 VGIQFHPEKNA 296 (308)
Q Consensus 286 ~GvQFHPE~~~ 296 (308)
||+|||||.+.
T Consensus 174 ~g~QfHPE~~~ 184 (235)
T PRK08250 174 YGFQCHMEFTV 184 (235)
T ss_pred EEEeecCcCCH
Confidence 99999999873
No 50
>PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing)
Probab=99.87 E-value=3.6e-21 Score=181.66 Aligned_cols=159 Identities=15% Similarity=0.277 Sum_probs=109.9
Q ss_pred hHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEec
Q psy12875 45 IAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVC 124 (308)
Q Consensus 45 i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC 124 (308)
+..++++.|++.|+.++++|++.+.+++. ..++|||+|+||+.| +. ......+.++++.. ++||||||
T Consensus 250 ~K~nIlr~L~~~G~~v~VvP~~~~~~ei~--~~~pDGIiLSnGPGD--P~-----~~~~~ie~ik~l~~---~iPIlGIC 317 (415)
T PLN02771 250 IKHNILRRLASYGCKITVVPSTWPASEAL--KMKPDGVLFSNGPGD--PS-----AVPYAVETVKELLG---KVPVFGIC 317 (415)
T ss_pred hHHHHHHHHHHcCCeEEEECCCCCHHHHh--hcCCCEEEEcCCCCC--hh-----HhhHHHHHHHHHHh---CCCEEEEc
Confidence 45788999999999999999877654433 237999999999633 21 11234555555442 38999999
Q ss_pred hhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCcccc
Q psy12875 125 LGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQ 204 (308)
Q Consensus 125 ~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~~~ 204 (308)
+|||+|+.+ +||++.+... .+ +|.
T Consensus 318 LGhQlLa~A-lGGkv~K~~~---------Gh--------------------------------------------~G~-- 341 (415)
T PLN02771 318 MGHQLLGQA-LGGKTFKMKF---------GH--------------------------------------------HGG-- 341 (415)
T ss_pred HHHHHHHHh-cCCeEEECCC---------Cc--------------------------------------------ccc--
Confidence 999999999 9998753211 00 011
Q ss_pred eeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEe-cCCCceEEEEEEecCC
Q psy12875 205 QVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLS-KYKSWEFVSTVEHKEY 283 (308)
Q Consensus 205 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s-~~~~~~~v~ai~~~~~ 283 (308)
.+++.......+ ..+.++|+++|++.+ +|+++++++.+ .|+. +++++++++
T Consensus 342 -------------n~pV~~~~~~~v-------~itsqnHg~aVd~~s-----Lp~~~~vt~~nlnDgt---vegi~~~~~ 393 (415)
T PLN02771 342 -------------NHPVRNNRTGRV-------EISAQNHNYAVDPAS-----LPEGVEVTHVNLNDGS---CAGLAFPAL 393 (415)
T ss_pred -------------eEEEEECCCCCE-------EEEecCHHHhhcccc-----CCCceEEEEEeCCCCc---EEEEEECCC
Confidence 111111000111 125789999997654 88999999987 4655 789999999
Q ss_pred CEEEEeecCCccCccc
Q psy12875 284 PIVGIQFHPEKNAYEW 299 (308)
Q Consensus 284 p~~GvQFHPE~~~~~~ 299 (308)
|+||||||||....++
T Consensus 394 pi~gVQFHPEa~pgp~ 409 (415)
T PLN02771 394 NVMSLQYHPEASPGPH 409 (415)
T ss_pred CEEEEEcCCCCCCCCC
Confidence 9999999999977554
No 51
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.86 E-value=1.9e-21 Score=169.26 Aligned_cols=170 Identities=26% Similarity=0.379 Sum_probs=103.8
Q ss_pred HHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHH-HHHHHHHHHHHHHcCCCccEEEech
Q psy12875 47 ASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADA-GRQILHLVDKINEEGVTFPVLGVCL 125 (308)
Q Consensus 47 ~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~-~~~~~e~~~~~~~~g~~~PvlGIC~ 125 (308)
.++.+++++.|.+++.+. +.+ .++++|+||+||++.... ..... ...+.+.++++.+. ++||||||+
T Consensus 13 ~~~~~~l~~~g~~v~~~~---~~~----~l~~~d~lilpG~g~~~~---~~~~l~~~~~~~~i~~~~~~--~~PvlGiC~ 80 (199)
T PRK13181 13 RSVANALKRLGVEAVVSS---DPE----EIAGADKVILPGVGAFGQ---AMRSLRESGLDEALKEHVEK--KQPVLGICL 80 (199)
T ss_pred HHHHHHHHHCCCcEEEEc---ChH----HhccCCEEEECCCCCHHH---HHHHHHHCChHHHHHHHHHC--CCCEEEECH
Confidence 477889999999888773 222 357899999999863111 01111 11345667777774 499999999
Q ss_pred hhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCC--ccc
Q psy12875 126 GFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKS--CKV 203 (308)
Q Consensus 126 G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~--g~~ 203 (308)
|+|+|+.+ .++... .++++.++ ++.+.+. ++.
T Consensus 81 G~Qll~~~-~~~~~~----------~glg~l~~-----------------------------------~v~~~~~~~~~~ 114 (199)
T PRK13181 81 GMQLLFES-SEEGNV----------KGLGLIPG-----------------------------------DVKRFRSEPLKV 114 (199)
T ss_pred hHHHhhhh-cccCCc----------CCcceEEE-----------------------------------EEEEcCCCCCCC
Confidence 99999998 432111 11322222 2222111 112
Q ss_pred ceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEecCC
Q psy12875 204 QQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEY 283 (308)
Q Consensus 204 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~~~ 283 (308)
+.+++..... ..++++|++++..+. ++++|++.+.+ .+ .+.++|+++++. .++++++. .
T Consensus 115 ~~~G~~~v~~--~~~~~lf~~l~~~~~--------~~~~Hs~~v~~-------~~-~~~~lA~s~~~~-~~~~~~~~--~ 173 (199)
T PRK13181 115 PQMGWNSVKP--LKESPLFKGIEEGSY--------FYFVHSYYVPC-------ED-PEDVLATTEYGV-PFCSAVAK--D 173 (199)
T ss_pred CccCcccccc--CCCChhHcCCCCCCE--------EEEeCeeEecc-------CC-cccEEEEEcCCC-EEEEEEEC--C
Confidence 2233321111 236778988876554 48999998853 33 356889887633 34556654 4
Q ss_pred CEEEEeecCCcc
Q psy12875 284 PIVGIQFHPEKN 295 (308)
Q Consensus 284 p~~GvQFHPE~~ 295 (308)
++||+|||||++
T Consensus 174 ~i~GvQFHPE~~ 185 (199)
T PRK13181 174 NIYAVQFHPEKS 185 (199)
T ss_pred CEEEEECCCccC
Confidence 699999999987
No 52
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=99.86 E-value=6.6e-21 Score=179.34 Aligned_cols=158 Identities=15% Similarity=0.300 Sum_probs=108.3
Q ss_pred HHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEech
Q psy12875 46 AASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCL 125 (308)
Q Consensus 46 ~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~ 125 (308)
..++.++|++.|+++.++|++.+.+++.. .++|||+++||+.+ +. . ..+..+.++++.+. ++||||||+
T Consensus 203 k~ni~~~L~~~G~~v~vvp~~~~~~~i~~--~~~dgIilSgGPg~--p~-~----~~~~i~~i~~~~~~--~~PilGICl 271 (382)
T CHL00197 203 KYNILRRLKSFGCSITVVPATSPYQDILS--YQPDGILLSNGPGD--PS-A----IHYGIKTVKKLLKY--NIPIFGICM 271 (382)
T ss_pred HHHHHHHHHHCCCeEEEEcCCCCHHHHhc--cCCCEEEEcCCCCC--hh-H----HHHHHHHHHHHHhC--CCCEEEEcH
Confidence 45789999999999999998876554432 37999999999633 31 1 22345556666653 489999999
Q ss_pred hhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCcccce
Q psy12875 126 GFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQ 205 (308)
Q Consensus 126 G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~~~~ 205 (308)
|||+|+.+ +||++.+.... + + +
T Consensus 272 GhQlLa~a-~Gg~v~k~~~G---------h--------------------------------------~------g---- 293 (382)
T CHL00197 272 GHQILSLA-LEAKTFKLKFG---------H--------------------------------------R------G---- 293 (382)
T ss_pred HHHHHHHH-hCCEEeccCCC---------C--------------------------------------C------C----
Confidence 99999999 99987432110 0 0 0
Q ss_pred eeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCC-CeEEEEEe-cCCCceEEEEEEecCC
Q psy12875 206 VNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTE-TWNILTLS-KYKSWEFVSTVEHKEY 283 (308)
Q Consensus 206 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~-~~~via~s-~~~~~~~v~ai~~~~~ 283 (308)
...++ ..+.++ ..+.++|++++.+++ +++ ++++++.+ +|+. +++++++++
T Consensus 294 -----------~n~pv--~~~~~v-------~itsq~H~~~v~~~s-----v~~~~~~vt~~~~nDgt---vegi~h~~~ 345 (382)
T CHL00197 294 -----------LNHPS--GLNQQV-------EITSQNHGFAVNLES-----LAKNKFYITHFNLNDGT---VAGISHSPK 345 (382)
T ss_pred -----------CCEec--CCCCce-------EEeecchheEeeccc-----cCCCCcEEEEEECCCCC---EEEEEECCC
Confidence 00000 011111 123578999998765 443 68888886 4554 789999999
Q ss_pred CEEEEeecCCccCcccC
Q psy12875 284 PIVGIQFHPEKNAYEWT 300 (308)
Q Consensus 284 p~~GvQFHPE~~~~~~~ 300 (308)
|+||||||||+...++.
T Consensus 346 pi~gVQFHPE~~~gp~d 362 (382)
T CHL00197 346 PYFSVQYHPEASPGPHD 362 (382)
T ss_pred CcEEEeeCCCCCCCCCC
Confidence 99999999999886654
No 53
>PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.86 E-value=2.9e-21 Score=169.09 Aligned_cols=186 Identities=22% Similarity=0.331 Sum_probs=111.9
Q ss_pred HHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHH-HHHHHHHHHHHHHcCCCccEEEech
Q psy12875 47 ASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADA-GRQILHLVDKINEEGVTFPVLGVCL 125 (308)
Q Consensus 47 ~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~-~~~~~e~~~~~~~~g~~~PvlGIC~ 125 (308)
.|.+++++..+.++..+. +.+ .++++|+||+||+++. .. .+... ...+.+.++++.++ ++|+||||+
T Consensus 13 ~s~~~al~~~~~~~~~~~---~~~----~l~~~d~iIlPG~g~~-~~--~~~~l~~~gl~~~i~~~~~~--~~pilGiC~ 80 (210)
T PRK14004 13 HSCLKAVSLYTKDFVFTS---DPE----TIENSKALILPGDGHF-DK--AMENLNSTGLRSTIDKHVES--GKPLFGICI 80 (210)
T ss_pred HHHHHHHHHcCCeEEEEC---CHH----HhccCCEEEECCCCch-HH--HHHHHHHcCcHHHHHHHHHc--CCCEEEECH
Confidence 477899999998877553 332 3578999999999842 11 12221 12566777777774 499999999
Q ss_pred hhhHHHHHhcCCc-cccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCcccc
Q psy12875 126 GFELILQVSNNDT-DFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQ 204 (308)
Q Consensus 126 G~Qll~~~~~gg~-~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~~~ 204 (308)
|||+|+.+ ++.. ...+. ....+|++.||..... .....++|.+||+ ++...
T Consensus 81 G~Q~l~~~-~~e~~~~~~~----~~~~Glg~~~~~v~~~-----~~~~~~~ph~Gw~------------~v~~~------ 132 (210)
T PRK14004 81 GFQILFES-SEETNQGTKK----EQIEGLGYIKGKIKKF-----EGKDFKVPHIGWN------------RLQIR------ 132 (210)
T ss_pred hHHHHHHh-cccccCCCcC----cccCCcceeEEEEEEc-----CCCCCcCCccCcc------------cceec------
Confidence 99999998 4321 10000 0013466666643321 0011256777765 33221
Q ss_pred eeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEecCCC
Q psy12875 205 QVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEYP 284 (308)
Q Consensus 205 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~~~p 284 (308)
...++++|++++..+. ++++|++.+. .++.+.+++.++..... ++++. .+.+
T Consensus 133 ----------~~~~~~lf~~l~~~~~--------v~~~HS~~~~--------~~~~l~~sa~~~~~g~~-~~a~~-~~~~ 184 (210)
T PRK14004 133 ----------RKDKSKLLKGIGDQSF--------FYFIHSYRPT--------GAEGNAITGLCDYYQEK-FPAVV-EKEN 184 (210)
T ss_pred ----------cCCCCccccCCCCCCE--------EEEeceeecC--------CCCcceEEEeeeECCEE-EEEEE-ecCC
Confidence 0135668999887654 4999998543 12334455554442322 34444 3457
Q ss_pred EEEEeecCCccCcccCC
Q psy12875 285 IVGIQFHPEKNAYEWTE 301 (308)
Q Consensus 285 ~~GvQFHPE~~~~~~~~ 301 (308)
+||+|||||++. +.|.
T Consensus 185 i~GvQFHPE~s~-~~G~ 200 (210)
T PRK14004 185 IFGTQFHPEKSH-THGL 200 (210)
T ss_pred EEEEeCCcccCc-hhHH
Confidence 999999999998 4653
No 54
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.85 E-value=8.8e-21 Score=165.21 Aligned_cols=168 Identities=18% Similarity=0.253 Sum_probs=107.4
Q ss_pred HHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhH--HHHHHHHHHHHHHHcCCCccEEEec
Q psy12875 47 ASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYAD--AGRQILHLVDKINEEGVTFPVLGVC 124 (308)
Q Consensus 47 ~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~--~~~~~~e~~~~~~~~g~~~PvlGIC 124 (308)
.++.++++..|..+..+..... ..+.++|+|++|||+... +.+ +...+.++++++.+++ +|+||||
T Consensus 17 ~~~~~~l~~~g~~~~~~~~~~~-----~~l~~~d~iii~GG~~~~-----~~~~~~~~~~~~~i~~~~~~~--~pilGIC 84 (200)
T PRK13527 17 DALKRALDELGIDGEVVEVRRP-----GDLPDCDALIIPGGESTT-----IGRLMKREGILDEIKEKIEEG--LPILGTC 84 (200)
T ss_pred HHHHHHHHhcCCCeEEEEeCCh-----HHhccCCEEEECCCcHHH-----HHHHHhhccHHHHHHHHHHCC--CeEEEEC
Confidence 3677899999988777765432 246789999999996321 222 2224678888888754 9999999
Q ss_pred hhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCcccc
Q psy12875 125 LGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQ 204 (308)
Q Consensus 125 ~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~~~ 204 (308)
+|+|+|+.+ +||..+... ....+++.|+ ++.+.+.|...
T Consensus 85 ~G~Qll~~~-~gg~~v~~~-----~~~~lG~~~~-----------------------------------~v~~~~~g~~~ 123 (200)
T PRK13527 85 AGLILLAKE-VGDDRVTKT-----EQPLLGLMDV-----------------------------------TVKRNAFGRQR 123 (200)
T ss_pred HHHHHHHhh-hcCCccCCC-----CCceeeeeEE-----------------------------------EEeeccccCcc
Confidence 999999999 888432110 0112333322 12111111000
Q ss_pred eeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEecCCC
Q psy12875 205 QVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEYP 284 (308)
Q Consensus 205 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~~~p 284 (308)
. . .....++.+++..+. ++++|++.+.. +|++++++|+++++. ++++.. +
T Consensus 124 ~-~--------~~~~~~~~~~~~~~~--------~~~~H~~~v~~-------lp~~~~~la~~~~~~----~a~~~~--~ 173 (200)
T PRK13527 124 D-S--------FEAEIDLSGLDGPFH--------AVFIRAPAITK-------VGGDVEVLAKLDDRI----VAVEQG--N 173 (200)
T ss_pred c-c--------EEEeEeccccCCcce--------EEEEccccccc-------cCCCeEEEEEECCEE----EEEEEC--C
Confidence 0 0 012234566665554 38899998863 899999999987753 366643 6
Q ss_pred EEEEeecCCccCc
Q psy12875 285 IVGIQFHPEKNAY 297 (308)
Q Consensus 285 ~~GvQFHPE~~~~ 297 (308)
+||+|||||....
T Consensus 174 ~~g~QfHPE~~~~ 186 (200)
T PRK13527 174 VLATAFHPELTDD 186 (200)
T ss_pred EEEEEeCCCCCCC
Confidence 9999999997754
No 55
>PRK06186 hypothetical protein; Validated
Probab=99.85 E-value=3.4e-21 Score=169.02 Aligned_cols=192 Identities=16% Similarity=0.179 Sum_probs=107.0
Q ss_pred CccchHHHHHHHHHHc----CCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCC
Q psy12875 41 YTSYIAASYVKNIEAA----GARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGV 116 (308)
Q Consensus 41 ~~~~i~~~~~~~l~~a----G~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~ 116 (308)
.|.|. |+.++|+.+ +..+.+.+++++.-+-+..|+++|||++|||.- + +-....+..++.+.+ +
T Consensus 14 ~daY~--Sv~eal~ha~~~~~~~~~i~wi~s~~l~~~~~l~~~dgilvpgGfg-------~-rg~~Gki~ai~~Are--~ 81 (229)
T PRK06186 14 VTAHQ--AIPLALDLAAAVLGLPVDYEWLPTPEITDPEDLAGFDGIWCVPGSP-------Y-RNDDGALTAIRFARE--N 81 (229)
T ss_pred cHHHH--HHHHHHHHHHHhcCCeeEEEEEchhhcCChhhHhhCCeeEeCCCCC-------c-ccHhHHHHHHHHHHH--c
Confidence 46675 778888766 467777777654322223688999999999941 1 112345666677777 5
Q ss_pred CccEEEechhhhHHHHHhcC-CccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcc
Q psy12875 117 TFPVLGVCLGFELILQVSNN-DTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDT 195 (308)
Q Consensus 117 ~~PvlGIC~G~Qll~~~~~g-g~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v 195 (308)
++|+||||+|||+++..... +..+++.... .+.|....|. |
T Consensus 82 ~iP~LGIClGmQ~avIe~arnv~g~~dA~s~-------E~~~~~~~pv-------------------------------i 123 (229)
T PRK06186 82 GIPFLGTCGGFQHALLEYARNVLGWADAAHA-------ETDPEGDRPV-------------------------------I 123 (229)
T ss_pred CCCeEeechhhHHHHHHHHhhhcCCcCCCcC-------CCCCCCCCCE-------------------------------E
Confidence 59999999999987665222 2222222111 1111111110 0
Q ss_pred cccCCcccceeeecccccCCCCCCcCccCCChhHHHhhccCCc-eeeccceeeeeccccccCCCCCeEEEEEecCCCceE
Q psy12875 196 DFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPL-THNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEF 274 (308)
Q Consensus 196 ~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~ 274 (308)
..++ ......++.+.. .+++.+.+-+. .+.. ..+.|+|.|+...-+.. ..++++++|+++|+.
T Consensus 124 ~~~~-~~~~~~~h~v~l---~~~S~l~~iyg--------~~~i~erhrHryeVNs~h~q~i-~~~GL~vsa~s~DG~--- 187 (229)
T PRK06186 124 APLS-CSLVEKTGDIRL---RPGSLIARAYG--------TLEIEEGYHCRYGVNPEFVAAL-ESGDLRVTGWDEDGD--- 187 (229)
T ss_pred EECc-cccccCceEEEE---CCCCHHHHHhC--------CCeeeeeccccEEECHHHHHHH-hcCCeEEEEEcCCCC---
Confidence 0000 000000111111 12443333222 2222 24556677764322211 368999999998876
Q ss_pred EEEEEecCCCE-EEEeecCCccCcc
Q psy12875 275 VSTVEHKEYPI-VGIQFHPEKNAYE 298 (308)
Q Consensus 275 v~ai~~~~~p~-~GvQFHPE~~~~~ 298 (308)
|+|+|.+++|| +|||||||+....
T Consensus 188 iEaiE~~~hpf~lGVQwHPE~~s~~ 212 (229)
T PRK06186 188 VRAVELPGHPFFVATLFQPERAALA 212 (229)
T ss_pred EEEEEeCCCCcEEEEeCCCCccCCC
Confidence 77999998885 5999999987643
No 56
>KOG0026|consensus
Probab=99.85 E-value=1.7e-21 Score=158.82 Aligned_cols=129 Identities=22% Similarity=0.366 Sum_probs=109.0
Q ss_pred ceeeecCCCCcch----hhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccC----CcccceeeecccccCCCCCCcCcc
Q psy12875 152 NLKFLPGAKRSSL----FSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRK----SCKVQQVNLNLKFLPGAKRSSLFS 223 (308)
Q Consensus 152 ~l~~~pg~~~~~~----~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~----~g~~~~~~~~~~~~~~~~~~~l~~ 223 (308)
.|.++|||++|.. .+.++++..++|++|||.|.|.|-.++||+|.+.. ||+...+.+.- ..+..+|+
T Consensus 66 ~LliSPGPG~P~DsGIs~~~i~~f~~~iP~fGvCMGlQCi~e~fGGkv~~a~~~i~HGK~S~i~~D~-----~~~~G~f~ 140 (223)
T KOG0026|consen 66 GLLISPGPGTPQDSGISLQTVLELGPLVPLFGVCMGLQCIGEAFGGKIVRSPFGVMHGKSSMVHYDE-----KGEEGLFS 140 (223)
T ss_pred eEEecCCCCCCccccchHHHHHHhCCCCceeeeehhhhhhhhhhCcEEeccCcceeeccccccccCC-----cccccccc
Confidence 5889999999983 45777889999999999999999999999999986 67777776631 12357999
Q ss_pred CCChhHHHhhccCCceeeccceeeeeccccccCCC-CCeEEEEEecCCCceEEEEEEecCCC-EEEEeecCCccCcccCC
Q psy12875 224 QVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLT-ETWNILTLSKYKSWEFVSTVEHKEYP-IVGIQFHPEKNAYEWTE 301 (308)
Q Consensus 224 ~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~-~~~~via~s~~~~~~~v~ai~~~~~p-~~GvQFHPE~~~~~~~~ 301 (308)
++|..+.+ .+||+.+....+ +| +.++|+|+++++- ||+.+|+.|. +-|+|||||+..+|.|-
T Consensus 141 g~~q~~~V--------~RYHSLa~~~sS-----lP~d~L~VTawTEnG~---iMgaRHkKY~~ieGVQfHPESIlteeGk 204 (223)
T KOG0026|consen 141 GLSNPFIV--------GRYHSLVIEKDS-----FPSDELEVTAWTEDGL---VMAARHRKYKHIQGVQFHPESIITTEGK 204 (223)
T ss_pred CCCCCeEE--------Eeeeeeeeeccc-----CCccceeeeEeccCcE---EEeeeccccccccceeecchhhhhhhhH
Confidence 99988764 899999998766 66 8899999988874 9999999987 67999999999998874
No 57
>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.85 E-value=1.4e-20 Score=164.01 Aligned_cols=173 Identities=22% Similarity=0.338 Sum_probs=102.6
Q ss_pred HHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHH--HHHHHHHHH-HHcCCCccEEEe
Q psy12875 47 ASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGR--QILHLVDKI-NEEGVTFPVLGV 123 (308)
Q Consensus 47 ~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~--~~~e~~~~~-~~~g~~~PvlGI 123 (308)
.+..++|++.|+++.+++ +++ .+.++|+||+||+++.. + ..+..+ .+.+.++++ ++ .++|||||
T Consensus 13 ~~v~~~l~~~g~~~~~~~---~~~----~l~~~d~lilPG~g~~~-~---~~~~l~~~~~~~~l~~~~~~--~~~pvlGi 79 (201)
T PRK13152 13 NSVAKAFEKIGAINFIAK---NPK----DLQKADKLLLPGVGSFK-E---AMKNLKELGFIEALKEQVLV--QKKPILGI 79 (201)
T ss_pred HHHHHHHHHCCCeEEEEC---CHH----HHcCCCEEEECCCCchH-H---HHHHHHHcCcHHHHHHHHHh--CCCcEEEE
Confidence 477899999999877654 222 35679999999998421 1 111111 233444443 45 34999999
Q ss_pred chhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCccc
Q psy12875 124 CLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKV 203 (308)
Q Consensus 124 C~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~~ 203 (308)
|+|||+|+.++.+|...+. +++.+|...... .....++|..|+
T Consensus 80 C~G~Q~l~~~~~~~~~~~~----------lg~~~g~v~~~~----~~~~~~~~~~g~----------------------- 122 (201)
T PRK13152 80 CLGMQLFLERGYEGGVCEG----------LGFIEGEVVKFE----EDLNLKIPHMGW----------------------- 122 (201)
T ss_pred CHhHHHHhhcccccCCcCC----------cccccEEEEECC----CCCCCcCCccCe-----------------------
Confidence 9999999987455543221 333233221100 000001222222
Q ss_pred ceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEecCC
Q psy12875 204 QQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEY 283 (308)
Q Consensus 204 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~~~ 283 (308)
..+.. ..++++|++++.++. ++++|++.+.. ++ ..+.+.++++. .++++++. .
T Consensus 123 ~~v~~-------~~~~~l~~~l~~~~~--------~~~vHS~~v~~-------~~--~~v~a~~~~g~-~~~~a~~~--~ 175 (201)
T PRK13152 123 NELEI-------LKQSPLYQGIPEKSD--------FYFVHSFYVKC-------KD--EFVSAKAQYGH-KFVASLQK--D 175 (201)
T ss_pred EEEEE-------CCCChhhhCCCCCCe--------EEEEcccEeec-------CC--CcEEEEECCCC-EEEEEEec--C
Confidence 11111 246778888876554 48999999863 22 35677766654 35667774 3
Q ss_pred CEEEEeecCCccC
Q psy12875 284 PIVGIQFHPEKNA 296 (308)
Q Consensus 284 p~~GvQFHPE~~~ 296 (308)
++||+|||||++.
T Consensus 176 ~i~GvQFHPE~~~ 188 (201)
T PRK13152 176 NIFATQFHPEKSQ 188 (201)
T ss_pred CEEEEeCCCeecC
Confidence 6999999999973
No 58
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=99.84 E-value=2.9e-20 Score=169.43 Aligned_cols=161 Identities=17% Similarity=0.343 Sum_probs=115.3
Q ss_pred hHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEec
Q psy12875 45 IAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVC 124 (308)
Q Consensus 45 i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC 124 (308)
+..++.+.|.+.|+++.++|++.+.+++.+ .+.|||+++-|+- +| ...+..++.+++.+.+ .+|++|||
T Consensus 189 vK~nIlr~L~~rg~~vtVVP~~t~~eeIl~--~~pDGiflSNGPG--DP-----~~~~~~i~~ik~l~~~--~iPifGIC 257 (368)
T COG0505 189 VKRNILRELVKRGCRVTVVPADTSAEEILA--LNPDGIFLSNGPG--DP-----APLDYAIETIKELLGT--KIPIFGIC 257 (368)
T ss_pred ccHHHHHHHHHCCCeEEEEcCCCCHHHHHh--hCCCEEEEeCCCC--Ch-----hHHHHHHHHHHHHhcc--CCCeEEEc
Confidence 667899999999999999999988765433 3799999988863 33 2345677778887774 37999999
Q ss_pred hhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCcccc
Q psy12875 125 LGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQ 204 (308)
Q Consensus 125 ~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~~~ 204 (308)
+|+|+|+.| +|++.++.++ ++ +|
T Consensus 258 LGHQllalA-~Ga~T~KmkF---------GH--------------------------------------------rG--- 280 (368)
T COG0505 258 LGHQLLALA-LGAKTYKMKF---------GH--------------------------------------------RG--- 280 (368)
T ss_pred HHHHHHHHh-cCCceeeccc---------CC--------------------------------------------CC---
Confidence 999999999 9998753221 11 00
Q ss_pred eeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEe-cCCCceEEEEEEecCC
Q psy12875 205 QVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLS-KYKSWEFVSTVEHKEY 283 (308)
Q Consensus 205 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s-~~~~~~~v~ai~~~~~ 283 (308)
.++|.-+....++ .++.++|.|+|++++ +++..+++..+ .|+. +++++++++
T Consensus 281 ------------~NhPV~dl~tgrv-------~ITSQNHGyaVd~~s-----~~~~~~vth~nlnDgT---vEGi~h~~~ 333 (368)
T COG0505 281 ------------ANHPVKDLDTGRV-------YITSQNHGYAVDEDS-----LVETLKVTHVNLNDGT---VEGIRHKDL 333 (368)
T ss_pred ------------CCcCcccccCCeE-------EEEecCCceecChhh-----cCCCceeEEEeCCCCC---ccceecCCC
Confidence 1222222111211 246789999999875 44433677777 5666 669999999
Q ss_pred CEEEEeecCCccCcccC
Q psy12875 284 PIVGIQFHPEKNAYEWT 300 (308)
Q Consensus 284 p~~GvQFHPE~~~~~~~ 300 (308)
|+|+||||||.++.+|-
T Consensus 334 P~fSVQ~HPEAsPGPhD 350 (368)
T COG0505 334 PAFSVQYHPEASPGPHD 350 (368)
T ss_pred ceEEEccCCCCCCCCcc
Confidence 99999999999987653
No 59
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.84 E-value=5.6e-20 Score=160.15 Aligned_cols=173 Identities=26% Similarity=0.416 Sum_probs=106.0
Q ss_pred cchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEE
Q psy12875 43 SYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLG 122 (308)
Q Consensus 43 ~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlG 122 (308)
.++ .++.++|+.+|+++.+++ +.+ .++++|||++|||+. .. +..+..+.+.+.++++.+++ +|+||
T Consensus 11 ~~~-~~~~~~l~~~G~~~~~~~---~~~----~~~~~d~iii~G~~~--~~--~~~~~~~~~~~~i~~~~~~~--~Pilg 76 (200)
T PRK13143 11 GNL-RSVSKALERAGAEVVITS---DPE----EILDADGIVLPGVGA--FG--AAMENLSPLRDVILEAARSG--KPFLG 76 (200)
T ss_pred ccH-HHHHHHHHHCCCeEEEEC---CHH----HHccCCEEEECCCCC--HH--HHHHHHHHHHHHHHHHHHcC--CCEEE
Confidence 344 588999999999988774 222 457899999999752 11 12233345667778888754 99999
Q ss_pred echhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCc-
Q psy12875 123 VCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSC- 201 (308)
Q Consensus 123 IC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g- 201 (308)
||+|+|+|+.++.+|+.++. +.+.+| ++.+.+++
T Consensus 77 IC~G~q~l~~~~~~g~~~~~----------lg~~~g-----------------------------------~v~~~~~~~ 111 (200)
T PRK13143 77 ICLGMQLLFESSEEGGGVRG----------LGLFPG-----------------------------------RVVRFPAGV 111 (200)
T ss_pred ECHHHHHHhhhhccCCCCCC----------cceeeE-----------------------------------EEEEcCCCC
Confidence 99999999987456654321 222222 22221110
Q ss_pred ccceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEec
Q psy12875 202 KVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHK 281 (308)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~ 281 (308)
.....++..... ..+++++++++... ++++|++.+. +++++.++|+++++. . ++++..+
T Consensus 112 ~~~~~g~~~v~~--~~~~~l~~~l~~~~---------~~~~Hs~~~~--------~~~~~~~la~~~~~~-~-~~~~~~~ 170 (200)
T PRK13143 112 KVPHMGWNTVKV--VKDCPLFEGIDGEY---------VYFVHSYYAY--------PDDEDYVVATTDYGI-E-FPAAVCN 170 (200)
T ss_pred CCCeecceEEEE--cCCChhhccCCCcE---------EEEEeeeeeC--------CCCcceEEEEEcCCC-E-EEEEEEc
Confidence 001111111100 13567777764322 3789998875 456688999987644 2 3344444
Q ss_pred CCCEEEEeecCCccC
Q psy12875 282 EYPIVGIQFHPEKNA 296 (308)
Q Consensus 282 ~~p~~GvQFHPE~~~ 296 (308)
+ ++||+|||||++.
T Consensus 171 ~-~~~gvQfHPE~~~ 184 (200)
T PRK13143 171 D-NVFGTQFHPEKSG 184 (200)
T ss_pred C-CEEEEeCCCccch
Confidence 4 8999999999973
No 60
>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.84 E-value=3.1e-20 Score=162.33 Aligned_cols=173 Identities=25% Similarity=0.316 Sum_probs=107.6
Q ss_pred HHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechh
Q psy12875 47 ASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLG 126 (308)
Q Consensus 47 ~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G 126 (308)
..+.++|++.|+.+..+. +++ .++++||||+|||+...+. ......+++.++++++.+. ++|+||||+|
T Consensus 13 ~~i~~~l~~~G~~v~~~~---~~~----~l~~~d~iiipG~~~~~~~--~~~~~~~~~~~~i~~~~~~--~~pvlGIC~G 81 (205)
T PRK13141 13 RSVEKALERLGAEAVITS---DPE----EILAADGVILPGVGAFPDA--MANLRERGLDEVIKEAVAS--GKPLLGICLG 81 (205)
T ss_pred HHHHHHHHHCCCeEEEEC---CHH----HhccCCEEEECCCCchHHH--HHHHHHcChHHHHHHHHHC--CCcEEEECHH
Confidence 577899999999988764 222 4678999999998631110 0111123567778887774 4899999999
Q ss_pred hhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCc---cc
Q psy12875 127 FELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSC---KV 203 (308)
Q Consensus 127 ~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g---~~ 203 (308)
+|+|+....++..+ ..+++. ++++.+.+++ ..
T Consensus 82 ~Qll~~~~~~~~~~----------~~lg~l-----------------------------------~g~v~~~~~~~~~~~ 116 (205)
T PRK13141 82 MQLLFESSEEFGET----------EGLGLL-----------------------------------PGRVRRFPPEEGLKV 116 (205)
T ss_pred HHHhhhccccCCCC----------CccceE-----------------------------------EEEEEEcCCCCCCcc
Confidence 99999872221111 011111 1233332110 11
Q ss_pred ceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEecCC
Q psy12875 204 QQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEY 283 (308)
Q Consensus 204 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~~~ 283 (308)
...++..... .+++++|++++..+. ++++|++.+. +++++.++|+++++ .+ +++++.. .
T Consensus 117 ~~~g~~~i~~--~~~~~l~~~l~~~~~--------v~~~Hs~~v~--------~~~~~~v~a~~~~~-~~-~~a~~~~-~ 175 (205)
T PRK13141 117 PHMGWNQLEL--KKESPLLKGIPDGAY--------VYFVHSYYAD--------PCDEEYVAATTDYG-VE-FPAAVGK-D 175 (205)
T ss_pred cEecCcccee--CCCChhhhCCCCCCE--------EEEECeeEec--------cCCcCeEEEEEeCC-cE-EEEEEec-C
Confidence 1222211111 236788888876554 3789999885 46778899988765 33 6677654 4
Q ss_pred CEEEEeecCCccC
Q psy12875 284 PIVGIQFHPEKNA 296 (308)
Q Consensus 284 p~~GvQFHPE~~~ 296 (308)
++||+|||||+..
T Consensus 176 ~i~GvQfHPE~~~ 188 (205)
T PRK13141 176 NVFGAQFHPEKSG 188 (205)
T ss_pred CEEEEeCCCccch
Confidence 8999999999874
No 61
>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit. This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.
Probab=99.83 E-value=2.2e-20 Score=162.17 Aligned_cols=170 Identities=24% Similarity=0.324 Sum_probs=100.3
Q ss_pred HHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHH-HHHH-HHHHHcCCCccEEEec
Q psy12875 47 ASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQI-LHLV-DKINEEGVTFPVLGVC 124 (308)
Q Consensus 47 ~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~-~e~~-~~~~~~g~~~PvlGIC 124 (308)
.++.++|+..|+.+.+++. ++ .++++|+||+||+++..+ .+ +..++. ++.+ +++.+. ++||||||
T Consensus 12 ~~l~~~l~~~g~~v~v~~~---~~----~l~~~d~lii~G~~~~~~---~~-~~l~~~~~~~l~~~~~~~--~~pvlGiC 78 (196)
T TIGR01855 12 GSVKRALKRVGAEPVVVKD---SK----EAELADKLILPGVGAFGA---AM-ARLRENGLDLFVELVVRL--GKPVLGIC 78 (196)
T ss_pred HHHHHHHHHCCCcEEEEcC---HH----HhccCCEEEECCCCCHHH---HH-HHHHHcCcHHHHHHHHhC--CCCEEEEC
Confidence 3678899999999888872 22 357899999999753111 11 111221 3334 656664 49999999
Q ss_pred hhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCcccc
Q psy12875 125 LGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQ 204 (308)
Q Consensus 125 ~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~~~ 204 (308)
.|||+|+.++.+|..+ ..+++.+| ++.+.++.+..
T Consensus 79 ~G~Qll~~~~~~~~~~----------~glg~~~~-----------------------------------~v~~~~~~~~~ 113 (196)
T TIGR01855 79 LGMQLLFERSEEGGGV----------PGLGLIKG-----------------------------------NVVKLEARKVP 113 (196)
T ss_pred HHHHHhhhccccCCCC----------CCcceeeE-----------------------------------EEEECCCCCCC
Confidence 9999999983333211 12333222 33322111122
Q ss_pred eeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEecCCC
Q psy12875 205 QVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEYP 284 (308)
Q Consensus 205 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~~~p 284 (308)
.+++..... ..+++||+++++.+. ++++|++.+.+ .+ +. +++.++++. .+.++.+ +.+
T Consensus 114 ~~g~~~~~~--~~~~~l~~~l~~~~~--------v~~~Hs~~v~~-------~~-~~-~~a~~~~g~-~~~~~~~--~~~ 171 (196)
T TIGR01855 114 HMGWNEVHP--VKESPLLNGIDEGAY--------FYFVHSYYAVC-------EE-EA-VLAYADYGE-KFPAAVQ--KGN 171 (196)
T ss_pred cccCeeeee--CCCChHHhCCCCCCE--------EEEECeeEecC-------CC-Cc-EEEEEcCCc-EEEEEEe--cCC
Confidence 222221111 246678888877665 48999999863 23 43 566655433 2333333 447
Q ss_pred EEEEeecCCccC
Q psy12875 285 IVGIQFHPEKNA 296 (308)
Q Consensus 285 ~~GvQFHPE~~~ 296 (308)
+||+|||||++.
T Consensus 172 i~GvQFHPE~~~ 183 (196)
T TIGR01855 172 IFGTQFHPEKSG 183 (196)
T ss_pred EEEEECCCccCc
Confidence 999999999874
No 62
>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade. This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.
Probab=99.83 E-value=1.2e-19 Score=184.54 Aligned_cols=177 Identities=20% Similarity=0.276 Sum_probs=110.2
Q ss_pred CCCCccchHHHHHHHHHHc-C--CeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHc
Q psy12875 38 YPNYTSYIAASYVKNIEAA-G--ARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEE 114 (308)
Q Consensus 38 ~~~~~~~i~~~~~~~l~~a-G--~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~ 114 (308)
.++++||. .++++.|++. | ..+.+++++....+....+..+||||++||+.+... .....+.+.+.+..+.
T Consensus 11 ID~~DSft-~nl~~~l~~~~g~~~~v~vv~~d~~~~~~~~~l~~~D~VVIspGPG~p~~-----~~~~~i~~~i~~~~~~ 84 (742)
T TIGR01823 11 IDSYDSFT-YNVVRLLEQQTDISVHVTTVHSDTFQDQLLELLPLFDAIVVGPGPGNPNN-----AQDMGIISELWELANL 84 (742)
T ss_pred EeCCcchH-HHHHHHHHHhcCCCcEEEEEeCCCCchhhhhhhcCCCEEEECCCCCCccc-----hhhhHHHHHHHHhccc
Confidence 35567775 4778888875 3 566777766433322224678999999877633211 1111222222221111
Q ss_pred CCCccEEEechhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCc
Q psy12875 115 GVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNND 194 (308)
Q Consensus 115 g~~~PvlGIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~ 194 (308)
.++||||||+|||+|+.+ +||++.....
T Consensus 85 -~~iPvLGIClG~QlLa~a-~GG~v~~~~~-------------------------------------------------- 112 (742)
T TIGR01823 85 -DEVPVLGICLGFQSLCLA-QGADISRLPT-------------------------------------------------- 112 (742)
T ss_pred -CCCcEEEEchhhHHHHhh-cCCEEEECCC--------------------------------------------------
Confidence 248999999999999999 9998632110
Q ss_pred ccccCCcccceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCC--eEEEEEecCCCc
Q psy12875 195 TDFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTET--WNILTLSKYKSW 272 (308)
Q Consensus 195 v~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~--~~via~s~~~~~ 272 (308)
..||....+.+ ....+|.+++. +. ++++|++.+... .++. +.+++.+.++.
T Consensus 113 ---~~hG~~~~v~~--------~~~~lf~gl~~-~~--------v~~~Hs~~v~~~------~~~~l~~~~~a~~~~~~- 165 (742)
T TIGR01823 113 ---PKHGQVYEMHT--------NDAAIFCGLFS-VK--------STRYHSLYANPE------GIDTLLPLCLTEDEEGI- 165 (742)
T ss_pred ---CCcCeEEEEEE--------CCccccCCCCC-Cc--------eeEEEEEEccCC------CCCcceEEEEEEcCCCC-
Confidence 00122222221 24457887764 43 489999998642 3344 45666655544
Q ss_pred eEEEEEEecCCCEEEEeecCCccCcccC
Q psy12875 273 EFVSTVEHKEYPIVGIQFHPEKNAYEWT 300 (308)
Q Consensus 273 ~~v~ai~~~~~p~~GvQFHPE~~~~~~~ 300 (308)
.+||++++++|+||||||||+..++.+
T Consensus 166 -~i~ai~h~~~pi~GVQFHPE~~~s~~g 192 (742)
T TIGR01823 166 -ILMSAQTKKKPWFGVQYHPESCCSELG 192 (742)
T ss_pred -eEEEEEEcCCceEEEEeCcccCCCCcc
Confidence 589999999999999999999888765
No 63
>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.83 E-value=6.8e-20 Score=157.50 Aligned_cols=161 Identities=24% Similarity=0.429 Sum_probs=101.1
Q ss_pred HHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHH-HHHHHHHHHHHcCCCccEEEech
Q psy12875 47 ASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGR-QILHLVDKINEEGVTFPVLGVCL 125 (308)
Q Consensus 47 ~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~-~~~e~~~~~~~~g~~~PvlGIC~ 125 (308)
.+.+++|+++|+++..+. +++ .+.++|+||+||+++.. . ......+ .+.+.+++ + .++|+||||+
T Consensus 13 ~s~~~al~~~g~~~~~v~---~~~----~l~~~D~lIlPG~g~~~-~--~~~~L~~~gl~~~i~~--~--~g~PvlGICl 78 (192)
T PRK13142 13 SNVKRAIEHLGYEVVVSN---TSK----IIDQAETIILPGVGHFK-D--AMSEIKRLNLNAILAK--N--TDKKMIGICL 78 (192)
T ss_pred HHHHHHHHHcCCCEEEEe---CHH----HhccCCEEEECCCCCHH-H--HHHHHHHCCcHHHHHH--h--CCCeEEEECH
Confidence 477899999999988775 222 46789999999997411 1 1221111 34555655 3 3489999999
Q ss_pred hhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCcccce
Q psy12875 126 GFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQ 205 (308)
Q Consensus 126 G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~~~~ 205 (308)
|||+|+..+.+|.. .+|++.|+....+. ...++|.+||. .+.
T Consensus 79 GmQlL~~~~~eg~~-----------~GLgll~~~V~rf~------~~~~vph~GWn------------~~~--------- 120 (192)
T PRK13142 79 GMQLMYEHSDEGDA-----------SGLGFIPGNISRIQ------TEYPVPHLGWN------------NLV--------- 120 (192)
T ss_pred HHHHHhhhcccCCc-----------CccCceeEEEEECC------CCCCCCccccc------------ccC---------
Confidence 99999988433321 24667666554321 12345655553 111
Q ss_pred eeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEecCCCE
Q psy12875 206 VNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEYPI 285 (308)
Q Consensus 206 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~~~p~ 285 (308)
.+.++++ ..+++.|++.+. .++ .+++.++.+ ..++++++.. ++
T Consensus 121 -----------~~~~l~~-------------~~~yFVhSy~v~--------~~~--~v~~~~~yg-~~~~~~v~~~--n~ 163 (192)
T PRK13142 121 -----------SKHPMLN-------------QDVYFVHSYQAP--------MSE--NVIAYAQYG-ADIPAIVQFN--NY 163 (192)
T ss_pred -----------CCCcccc-------------cEEEEECCCeEC--------CCC--CEEEEEECC-CeEEEEEEcC--CE
Confidence 1233443 135999999983 112 355665554 3468888765 49
Q ss_pred EEEeecCCccC
Q psy12875 286 VGIQFHPEKNA 296 (308)
Q Consensus 286 ~GvQFHPE~~~ 296 (308)
+|+|||||++.
T Consensus 164 ~g~QFHPEkS~ 174 (192)
T PRK13142 164 IGIQFHPEKSG 174 (192)
T ss_pred EEEecCcccCc
Confidence 99999999986
No 64
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=99.83 E-value=9.8e-20 Score=176.04 Aligned_cols=218 Identities=19% Similarity=0.249 Sum_probs=123.2
Q ss_pred CCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCC----eEEEEEcCCChhHH--HHhcCCCCEEEEcCCCCC
Q psy12875 17 DTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGA----RVVPILIGQDREYY--AEILTQINGVVIPGGGTG 90 (308)
Q Consensus 17 ~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~----~~~~i~~~~~~~~~--~~~l~~~dGlilpGG~~~ 90 (308)
.++.||+..--.. ..++|. |+.++|+.+|+ .+.+.+.+.+.... .+.++++|||++|||+.+
T Consensus 288 ~~v~IalVGKY~~----------~~daY~--SI~eAL~~ag~~~~~~V~~~~i~se~i~~~~~~~L~~~dGIiLpGG~G~ 355 (525)
T TIGR00337 288 HEVTIGIVGKYVE----------LKDSYL--SVIEALKHAGAKLDTKVNIKWIDSEDLEEEGAEFLKGVDGILVPGGFGE 355 (525)
T ss_pred CCcEEEEEeCCcC----------CHHHHH--HHHHHHHhCccccCCEEEEEEecHHHhhhhhhhhhcCCCEEEeCCCCCC
Confidence 3588888766322 235674 89999999886 45666554432211 124788999999999732
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhh
Q psy12875 91 FDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINE 170 (308)
Q Consensus 91 ~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~ 170 (308)
.. ....++.++.+.+. ++|+||||+|||+|+.+ +|+++..... +..-.+.|+...|-. ..+..
T Consensus 356 ~~--------~~g~i~ai~~a~e~--~iP~LGIClG~Qll~i~-~grnv~gl~~-----A~s~Ef~~~~~~pVi-~l~~~ 418 (525)
T TIGR00337 356 RG--------VEGKILAIKYAREN--NIPFLGICLGMQLAVIE-FARNVLGLKG-----ANSTEFDPETKYPVV-DLLPE 418 (525)
T ss_pred hh--------hcChHHHHHHHHHc--CCCEEEEcHHHHHHHHH-HHHHhcCCCC-----CCccccCCCCCCCee-eccCc
Confidence 11 12334555666663 49999999999999999 8886543221 011112222222210 00000
Q ss_pred hcCCCCeeeeehhHHHHHHHhCCcccccCCcccceeeecccccCCCCCCcCccCCChhHHHhhccCC-ceeeccceeeee
Q psy12875 171 EGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKP-LTHNNHIWCITR 249 (308)
Q Consensus 171 ~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~v~~~H~~~v~~ 249 (308)
|.-....||+.+-. .+.+. + .+++.+.+-+. ... ...+.|++.|++
T Consensus 419 --------------~~~~~~~GGTmRLG----~h~v~----i---~~gS~L~~iyG--------~~~i~erhrHry~VNs 465 (525)
T TIGR00337 419 --------------QKDISDLGGTMRLG----LYPCI----L---KPGTLAFKLYG--------KEEVYERHRHRYEVNN 465 (525)
T ss_pred --------------ccccccCCceeecc----ceEEE----E---CCCChHHHHhC--------CCceeecccceEEECH
Confidence 00000112222111 01111 1 13444443332 222 236778888876
Q ss_pred ccccccCCCCCeEEEEEecCCCceEEEEEEecCCCEE-EEeecCCccCccc
Q psy12875 250 QDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEYPIV-GIQFHPEKNAYEW 299 (308)
Q Consensus 250 ~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~~~p~~-GvQFHPE~~~~~~ 299 (308)
...+.. ..++++++|++.|++ .|+|+|++++||+ |||||||+...+.
T Consensus 466 ~h~q~l-~~~GL~vsa~s~Dgg--~VEaIE~~~hpfflGVQwHPE~~s~p~ 513 (525)
T TIGR00337 466 EYREQL-ENKGLIVSGTSPDGR--LVEIIELPDHPFFVACQFHPEFTSRPN 513 (525)
T ss_pred HHHHhh-hhCCeEEEEEECCCC--EEEEEEECCCCeEEEEecCCCCCCCCC
Confidence 443211 237899999998865 5889999999976 9999999886553
No 65
>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.
Probab=99.81 E-value=1.6e-19 Score=155.09 Aligned_cols=157 Identities=19% Similarity=0.276 Sum_probs=99.9
Q ss_pred HHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHH--HHHHHHHHHHHHHcCCCccEEEechhh
Q psy12875 50 VKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADA--GRQILHLVDKINEEGVTFPVLGVCLGF 127 (308)
Q Consensus 50 ~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~--~~~~~e~~~~~~~~g~~~PvlGIC~G~ 127 (308)
.++|++.|+++..+... + .++++|||++|||+.. .+... ...+.+.++++.+++ +|+||||.|+
T Consensus 14 ~~~l~~~g~~v~~v~~~---~----~l~~~dgiii~Gg~~~-----~~~~~~~~~~~~~~i~~~~~~g--~PvlGiC~G~ 79 (183)
T cd01749 14 IRALERLGVEVIEVRTP---E----DLEGIDGLIIPGGEST-----TIGKLLRRTGLLDPLREFIRAG--KPVFGTCAGL 79 (183)
T ss_pred HHHHHHCCCeEEEECCH---H----HhccCCEEEECCchHH-----HHHHHHHhCCHHHHHHHHHHcC--CeEEEECHHH
Confidence 38999999998888642 1 3678999999999731 12222 124567788888854 9999999999
Q ss_pred hHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCccc-cee
Q psy12875 128 ELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKV-QQV 206 (308)
Q Consensus 128 Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~~-~~~ 206 (308)
|+|+.+ +|+.. .. ..+++.|+ ++.+...|.. ...
T Consensus 80 qlL~~~-~~~~~---~~------~glG~~~~-----------------------------------~v~~~~~g~~~g~~ 114 (183)
T cd01749 80 ILLAKE-VEDQG---GQ------PLLGLLDI-----------------------------------TVRRNAFGRQVDSF 114 (183)
T ss_pred HHHHHH-hcccC---CC------CccCceeE-----------------------------------EEEeeccccccceE
Confidence 999999 77641 00 12333322 2222111100 000
Q ss_pred eecccccCCCCCCcCccCCC-hhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEecCCCE
Q psy12875 207 NLNLKFLPGAKRSSLFSQVP-SKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEYPI 285 (308)
Q Consensus 207 ~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~~~p~ 285 (308)
. ....+.+.+ +++. ++++|.+.|.. +|++++++|+++++ +.+++.+ ++
T Consensus 115 ~----------~~l~~~~~~~~~~~--------~~~~h~~~v~~-------~p~~~~~la~~~~~----~~a~~~~--~~ 163 (183)
T cd01749 115 E----------ADLDIPGLGLGPFP--------AVFIRAPVIEE-------VGPGVEVLAEYDGK----IVAVRQG--NV 163 (183)
T ss_pred E----------EcCCCCcCCCCccE--------EEEEECcEEEE-------cCCCcEEEEecCCE----EEEEEEC--CE
Confidence 0 111122222 3333 37889998864 89999999998654 3377765 59
Q ss_pred EEEeecCCccC
Q psy12875 286 VGIQFHPEKNA 296 (308)
Q Consensus 286 ~GvQFHPE~~~ 296 (308)
||+|||||.+.
T Consensus 164 ~g~qfHPE~~~ 174 (183)
T cd01749 164 LATSFHPELTD 174 (183)
T ss_pred EEEEcCCccCC
Confidence 99999999874
No 66
>PRK05380 pyrG CTP synthetase; Validated
Probab=99.80 E-value=3.9e-19 Score=171.97 Aligned_cols=199 Identities=18% Similarity=0.253 Sum_probs=111.0
Q ss_pred CccchHHHHHHHHHHcC----CeEEEEEcCCChh---HHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHH
Q psy12875 41 YTSYIAASYVKNIEAAG----ARVVPILIGQDRE---YYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINE 113 (308)
Q Consensus 41 ~~~~i~~~~~~~l~~aG----~~~~~i~~~~~~~---~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~ 113 (308)
.++|. |+.++|+.+| ..+.+.++++..- .....++++|||++|||..+ . ......+.++.+.+
T Consensus 301 ~DaY~--Sv~eAL~hag~~~~~~v~i~wIdse~l~~~~~~~~L~~~DGIIlpGGfG~--~------~~~g~i~~i~~a~e 370 (533)
T PRK05380 301 PDAYK--SVIEALKHAGIANDVKVNIKWIDSEDLEEENVAELLKGVDGILVPGGFGE--R------GIEGKILAIRYARE 370 (533)
T ss_pred cHHHH--HHHHHHHHHHHHcCCeeEEEEEChhhccCcchhhHhhcCCEEEecCCCCc--c------ccccHHHHHHHHHH
Confidence 35564 7778887765 4567777665431 13457889999999998521 1 11234566666666
Q ss_pred cCCCccEEEechhhhHHHHHhcCCccc--ccccccccc----ccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHH
Q psy12875 114 EGVTFPVLGVCLGFELILQVSNNDTDF--RKSCKVQQV----NLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELI 187 (308)
Q Consensus 114 ~g~~~PvlGIC~G~Qll~~~~~gg~~~--~~~~~~~~~----~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll 187 (308)
+ ++|+||||+|||+|+.+ +||++. ++....+.. .+.+.+.+.....
T Consensus 371 ~--~iPiLGIClGmQll~va-~Ggnv~g~qda~s~E~~~~t~~pvI~~~~~q~~~------------------------- 422 (533)
T PRK05380 371 N--NIPFLGICLGMQLAVIE-FARNVLGLEDANSTEFDPDTPHPVIDLMPEQKDV------------------------- 422 (533)
T ss_pred C--CCcEEEEchHHHHHHHH-hcccccCcccCcccccCCCCCCCeEeeccccccc-------------------------
Confidence 4 59999999999999999 999873 332111100 0011121110000
Q ss_pred HHHhCCcccccCCcccceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEe
Q psy12875 188 LQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLS 267 (308)
Q Consensus 188 ~~~~G~~v~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s 267 (308)
...|++... ..+.+. + .+++.+.+-+..+.. ...+.|++.|++..-+.. -..+++++|++
T Consensus 423 -~~~ggtmrl----g~h~v~----i---~~gS~l~~iyg~~~i-------~ErhrHryeVNs~h~qal-~~~GL~vsa~s 482 (533)
T PRK05380 423 -SDLGGTMRL----GAYPCK----L---KPGTLAAEIYGKEEI-------YERHRHRYEVNNKYREQL-EKAGLVFSGTS 482 (533)
T ss_pred -cccCCcccc----cceeEE----E---CCCChHHHHhCCCce-------eeecccceecCHHHHHHH-hhcCeEEEEEc
Confidence 000111000 001111 1 134444433322110 114556666654322110 12489999998
Q ss_pred cCCCceEEEEEEecCCCEE-EEeecCCccCccc
Q psy12875 268 KYKSWEFVSTVEHKEYPIV-GIQFHPEKNAYEW 299 (308)
Q Consensus 268 ~~~~~~~v~ai~~~~~p~~-GvQFHPE~~~~~~ 299 (308)
+|++ .|+|+|.+++||| |+|||||+...+.
T Consensus 483 ~Dgg--lVEaIEl~~hpfflGVQwHPE~~s~p~ 513 (533)
T PRK05380 483 PDGR--LVEIVELPDHPWFVGVQFHPEFKSRPR 513 (533)
T ss_pred CCCC--cEEEEEeCCCCEEEEEeCCCCCCCCCC
Confidence 7764 4889999999976 9999999876543
No 67
>PLN02327 CTP synthase
Probab=99.77 E-value=5.1e-18 Score=164.49 Aligned_cols=203 Identities=16% Similarity=0.219 Sum_probs=112.5
Q ss_pred CccchHHHHHHHHHHc----CCeEEEEEcCCChhH-------------HHHhcCCCCEEEEcCCCCCCCCCCchhHHHHH
Q psy12875 41 YTSYIAASYVKNIEAA----GARVVPILIGQDREY-------------YAEILTQINGVVIPGGGTGFDHPNGYADAGRQ 103 (308)
Q Consensus 41 ~~~~i~~~~~~~l~~a----G~~~~~i~~~~~~~~-------------~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~ 103 (308)
.+.|. |+.++|+.+ +..+.+.|++++.-+ ..+.++++|||++|||.-+.. . ..
T Consensus 310 ~DAY~--Si~eAL~hA~~~~~~~v~i~wI~se~l~~~~~~~~~~~y~~~~~~L~~~DGIvvpGGfG~~~----~----~G 379 (557)
T PLN02327 310 SDSYL--SVLKALLHASVACSRKLVIDWVAASDLEDETAKETPDAYAAAWKLLKGADGILVPGGFGDRG----V----EG 379 (557)
T ss_pred cHhHH--HHHHHHHHHHHHcCCeeEEEEEchhhcCCcccccccchhhhhHHhhccCCEEEeCCCCCCcc----c----cc
Confidence 35665 677777765 466777776554211 123588999999999952211 1 13
Q ss_pred HHHHHHHHHHcCCCccEEEechhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehh
Q psy12875 104 ILHLVDKINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLG 183 (308)
Q Consensus 104 ~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG 183 (308)
....++.+.+ +++|+||||+|||+++.+ ++.....-. +. ..-.+.|....|.. ..+.+ |
T Consensus 380 ~i~ai~~are--~~iP~LGIClGmQl~vie-faRnvlG~~-dA----nS~Efdp~t~~pvI-~~m~e----------~-- 438 (557)
T PLN02327 380 KILAAKYARE--NKVPYLGICLGMQIAVIE-FARSVLGLK-DA----NSTEFDPETPNPCV-IFMPE----------G-- 438 (557)
T ss_pred HHHHHHHHHH--cCCCEEEEcHHHHHHHHH-HHHhhcCCc-CC----CccccCCCCCCCEE-EEehh----------c--
Confidence 3444555555 459999999999999998 665442111 00 01111121111110 00000 0
Q ss_pred HHHHHHHhCCcccccCCcccceeeecccccCCCCCCcCccCCChhHHHhhccCCc--eeeccceeeeeccccccCC-CCC
Q psy12875 184 FELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPL--THNNHIWCITRQDMIKYGL-TET 260 (308)
Q Consensus 184 ~Qll~~~~G~~v~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--v~~~H~~~v~~~~~~~~~l-~~~ 260 (308)
-. ...||+.... ......+ .+++.+.+- +++... ..+.|+|.++++.... + ..+
T Consensus 439 --~~-~~~GGtMRLG---------~~~~~~~-~~~S~l~~i--------Yg~~~~VnerHrHRYeVN~q~v~~--le~~g 495 (557)
T PLN02327 439 --SK-THMGGTMRLG---------SRRTYFQ-TPDCKSAKL--------YGNVSFVDERHRHRYEVNPEMVPR--LEKAG 495 (557)
T ss_pred --cc-ccCCceEECC---------CcccccC-CCCCHHHHH--------hCCccceeeeeccccccCHHHHHH--HhhcC
Confidence 00 1123332221 1000000 123333332 222221 3677889998776432 3 589
Q ss_pred eEEEEEecCCCceEEEEEEecCCCEE-EEeecCCccCccc
Q psy12875 261 WNILTLSKYKSWEFVSTVEHKEYPIV-GIQFHPEKNAYEW 299 (308)
Q Consensus 261 ~~via~s~~~~~~~v~ai~~~~~p~~-GvQFHPE~~~~~~ 299 (308)
++++|+++++. .|+++|++++|+| |+|||||+.....
T Consensus 496 L~vsa~s~dg~--~IEaiE~~~~pffvGVQfHPE~~s~p~ 533 (557)
T PLN02327 496 LSFVGKDETGR--RMEIVELPSHPFFVGVQFHPEFKSRPG 533 (557)
T ss_pred cEEEEEcCCCC--EEEEEEeCCCCEEEEEEcCCCCCCCCC
Confidence 99999998765 5889999999987 9999999876544
No 68
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=99.77 E-value=1.1e-17 Score=164.15 Aligned_cols=174 Identities=23% Similarity=0.348 Sum_probs=106.3
Q ss_pred HHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHH--HHHHHHHHHHHcCCCccEEEec
Q psy12875 47 ASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGR--QILHLVDKINEEGVTFPVLGVC 124 (308)
Q Consensus 47 ~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~--~~~e~~~~~~~~g~~~PvlGIC 124 (308)
.+..++|++.|.++..++. ++ .++.+|+||+||+++.. . .+ +..+ .+.+.++++++.+ +|+||||
T Consensus 20 ~sl~~al~~~G~~v~~v~~---~~----~l~~~D~lIlpG~gs~~-~--~m-~~L~~~gl~~~i~~~i~~g--~PvLGIC 86 (538)
T PLN02617 20 RSVRNAIRHLGFTIKDVQT---PE----DILNADRLIFPGVGAFG-S--AM-DVLNNRGMAEALREYIQND--RPFLGIC 86 (538)
T ss_pred HHHHHHHHHCCCeEEEECC---hh----hhccCCEEEECCCCCHH-H--HH-HHHHHcCHHHHHHHHHHcC--CCEEEEC
Confidence 3678999999999877652 22 46789999999987421 1 11 1111 3566777777744 9999999
Q ss_pred hhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCcccc
Q psy12875 125 LGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQ 204 (308)
Q Consensus 125 ~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~~~ 204 (308)
+|||+|+.++.++... .++++.||...... .....++|.+|+. .+..
T Consensus 87 ~G~QlLa~~~~E~g~~----------~glg~l~G~v~~~~----~~~~~~vp~iGw~------------~V~~------- 133 (538)
T PLN02617 87 LGLQLLFESSEENGPV----------EGLGVIPGVVGRFD----SSNGLRVPHIGWN------------ALQI------- 133 (538)
T ss_pred HHHHHHhhhhhhcCCc----------cCcccccceEEECC----ccCCCCCCeecce------------EEEe-------
Confidence 9999999873211111 12444444322100 0001234555553 2211
Q ss_pred eeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCe-EEEEEecCCCceEEEEEEecCC
Q psy12875 205 QVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETW-NILTLSKYKSWEFVSTVEHKEY 283 (308)
Q Consensus 205 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~-~via~s~~~~~~~v~ai~~~~~ 283 (308)
..+++++.+++. . .++++|++.+.+ ++... .++++++.+ .++++++++.
T Consensus 134 -----------~~~spL~~~l~~-~--------~vy~vHSy~v~~-------~p~~~~~v~a~~~~g-~~~IaAI~~g-- 183 (538)
T PLN02617 134 -----------TKDSELLDGVGG-R--------HVYFVHSYRATP-------SDENKDWVLATCNYG-GEFIASVRKG-- 183 (538)
T ss_pred -----------cCCChhHhcCCC-c--------EEEEEeEEEEEe-------cCCCCcEEEEEEccC-CCcEEEEEeC--
Confidence 235678877643 2 248899998753 34333 344544433 3479999975
Q ss_pred CEEEEeecCCccC
Q psy12875 284 PIVGIQFHPEKNA 296 (308)
Q Consensus 284 p~~GvQFHPE~~~ 296 (308)
++||+|||||++.
T Consensus 184 nI~GVQFHPE~s~ 196 (538)
T PLN02617 184 NVHAVQFHPEKSG 196 (538)
T ss_pred CEEEEEcCCccCc
Confidence 6999999999985
No 69
>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.
Probab=99.76 E-value=7.1e-18 Score=144.90 Aligned_cols=74 Identities=24% Similarity=0.451 Sum_probs=54.4
Q ss_pred HHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHH--HHHHHHHHHHHHHcCCCccEEEech
Q psy12875 48 SYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADA--GRQILHLVDKINEEGVTFPVLGVCL 125 (308)
Q Consensus 48 ~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~--~~~~~e~~~~~~~~g~~~PvlGIC~ 125 (308)
+..++|+++|+++..++. .+ .++++|+|++|||... .+... ...+.+.++++.+++ +|++|||.
T Consensus 13 e~~~~l~~~g~~~~~v~~---~~----~l~~~d~liipGG~~~-----~~~~l~~~~~l~~~i~~~~~~g--~pilGIC~ 78 (184)
T TIGR03800 13 EHARALEALGVEGVEVKR---PE----QLDEIDGLIIPGGEST-----TLSRLLDKYGMFEPLRNFILSG--LPVFGTCA 78 (184)
T ss_pred HHHHHHHHCCCEEEEECC---hH----HhccCCEEEECCCCHH-----HHHHHHHhccHHHHHHHHHHcC--CcEEEECH
Confidence 456899999999887753 22 4678999999998531 12222 224567788888754 99999999
Q ss_pred hhhHHHHHhcC
Q psy12875 126 GFELILQVSNN 136 (308)
Q Consensus 126 G~Qll~~~~~g 136 (308)
|||+|+.. +.
T Consensus 79 G~qlL~~~-~~ 88 (184)
T TIGR03800 79 GLIMLAKE-II 88 (184)
T ss_pred HHHHHHhh-hc
Confidence 99999999 53
No 70
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=99.75 E-value=4.1e-18 Score=160.65 Aligned_cols=201 Identities=17% Similarity=0.202 Sum_probs=112.8
Q ss_pred CccchHHHHHHHHHHcC----CeEEEEEcCCChhHH--HHhcC-CCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHH
Q psy12875 41 YTSYIAASYVKNIEAAG----ARVVPILIGQDREYY--AEILT-QINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINE 113 (308)
Q Consensus 41 ~~~~i~~~~~~~l~~aG----~~~~~i~~~~~~~~~--~~~l~-~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~ 113 (308)
.|+|. |..++|+.+| ..+.+.|+++++-+. ...+. .+|||++|||.- +.. ....+..++.+.+
T Consensus 301 ~DaY~--Sv~EAL~hag~~~~~~v~i~wIdse~le~~~~~~~~~~~dgIlVPGGFG-------~RG-~eGkI~Ai~yARE 370 (533)
T COG0504 301 PDAYK--SVIEALKHAGIALGVKVNIKWIDSEDLEEENAAELEKLVDGILVPGGFG-------YRG-VEGKIAAIRYARE 370 (533)
T ss_pred hhHHH--HHHHHHHhhhhhcCCceeeEEEccccccccchhhhhhcCCEEEeCCCCC-------cCc-hHHHHHHHHHHHh
Confidence 46676 7888998776 566777776543111 11222 299999999952 111 1244555555555
Q ss_pred cCCCccEEEechhhhHHHHHhcCCcccccc-----ccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHH
Q psy12875 114 EGVTFPVLGVCLGFELILQVSNNDTDFRKS-----CKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELIL 188 (308)
Q Consensus 114 ~g~~~PvlGIC~G~Qll~~~~~gg~~~~~~-----~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~ 188 (308)
+++|+||||+|||+++.......+.... .+.....+-+.+.|+...-.
T Consensus 371 --n~iP~lGIClGmQ~aviE~ARnv~Gl~~AnS~Efdp~t~~pVv~l~~eq~~~~------------------------- 423 (533)
T COG0504 371 --NNIPFLGICLGMQLAVIEFARNVLGLEGANSTEFDPDTKYPVVDLMPEQKDVV------------------------- 423 (533)
T ss_pred --cCCCEEEEchhHHHHHHHHHHHhcCCccCcccccCCCCCCceEEeccccccCC-------------------------
Confidence 5699999999999998762221111000 11111112233333221100
Q ss_pred HHhCCcccccCCcccceeeecccccCCCCCCcCccCCChhHHHhhccCC-ceeeccceeeeeccccccCCCCCeEEEEEe
Q psy12875 189 QVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKP-LTHNNHIWCITRQDMIKYGLTETWNILTLS 267 (308)
Q Consensus 189 ~~~G~~v~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~v~~~H~~~v~~~~~~~~~l~~~~~via~s 267 (308)
-+||+.+- +...... ..++.+.+ .++... ...+.|+|.++++..... ...++.+.++|
T Consensus 424 -~lGGTmRL---------G~y~~~l--~~gT~a~~--------lY~~~~v~ERHRHRYEvN~~y~~~l-e~~Gl~~sg~s 482 (533)
T COG0504 424 -DLGGTMRL---------GAYPCRL--KPGTLAAK--------LYGKDEIYERHRHRYEVNNDYRDQL-EKAGLVFSGTS 482 (533)
T ss_pred -cCCceeec---------cceeeec--CCCcHHHH--------HhCCCeeeeeccchhhcCHHHHHHH-HhCCeEEEEEc
Confidence 02222211 1100000 11222222 122111 135788999987765432 45789999999
Q ss_pred cCCCceEEEEEEecCCCEE-EEeecCCccCcccCC
Q psy12875 268 KYKSWEFVSTVEHKEYPIV-GIQFHPEKNAYEWTE 301 (308)
Q Consensus 268 ~~~~~~~v~ai~~~~~p~~-GvQFHPE~~~~~~~~ 301 (308)
.|+. .++++|.+++||| |+|||||+...+.-+
T Consensus 483 ~d~~--lvEivE~~~hpfFv~~QfHPEf~SrP~~p 515 (533)
T COG0504 483 PDGG--LVEIVELPDHPFFVATQFHPEFKSRPLRP 515 (533)
T ss_pred CCCC--eEEEEEcCCCceEEEEcccccccCCCCCC
Confidence 8876 6999999999976 999999999887655
No 71
>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex
Probab=99.75 E-value=2.4e-17 Score=146.68 Aligned_cols=198 Identities=17% Similarity=0.301 Sum_probs=110.7
Q ss_pred EEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhH
Q psy12875 20 VIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYAD 99 (308)
Q Consensus 20 ~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~ 99 (308)
.|||++-... + .+..++|+++|++++.+.. .+ .+.++||||||||.+. .+..
T Consensus 3 ~igVLa~qG~--------------~--~e~~~aL~~lG~ev~~v~~---~~----~L~~~DgLILPGGfs~-----~~~~ 54 (248)
T PLN02832 3 AIGVLALQGS--------------F--NEHIAALRRLGVEAVEVRK---PE----QLEGVSGLIIPGGEST-----TMAK 54 (248)
T ss_pred EEEEEeCCCc--------------h--HHHHHHHHHCCCcEEEeCC---HH----HhccCCEEEeCCCHHH-----HHHH
Confidence 5888877432 1 2446899999999887753 22 4678999999997531 2443
Q ss_pred HHH--HHHHHHHHHHHcCCCccEEEechhhhHHHHHhcCCcc-ccccccccccccceeeecCCCCcchhhhHhhhcCCCC
Q psy12875 100 AGR--QILHLVDKINEEGVTFPVLGVCLGFELILQVSNNDTD-FRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFP 176 (308)
Q Consensus 100 ~~~--~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~~~gg~~-~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~P 176 (308)
..+ .+.+.++++.++| +|+||||.|||+|+..+.+++. -+.....-+..-.-++.++....+ +...++|
T Consensus 55 L~~~~gl~~~I~~~v~~g--~PvLGiC~GmqlLa~~~~~~~~~~~~~lg~Ldi~v~RN~~g~qv~sf------e~~l~ip 126 (248)
T PLN02832 55 LAERHNLFPALREFVKSG--KPVWGTCAGLIFLAERAVGQKEGGQELLGGLDCTVHRNFFGSQINSF------ETELPVP 126 (248)
T ss_pred HHhhcchHHHHHHHHHcC--CCEEEEChhHHHHHHHhcccccCCcceeCCccceEEecccCceeEeE------EcCCcCC
Confidence 333 4677788877744 9999999999999988444210 000000000000011333322222 0123566
Q ss_pred eeeeehhHHHHHHHhCCcccccCCcccceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccC
Q psy12875 177 VLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYG 256 (308)
Q Consensus 177 ilGiClG~Qll~~~~G~~v~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~ 256 (308)
.+||. .+... ....+ +. +...+ ....+.++..|++....+.
T Consensus 127 ~~gwn------------~~~~~---~~~~v-----Fi---rap~i-----------~~~~~~v~~l~sy~~~~~~----- 167 (248)
T PLN02832 127 ELAAS------------EGGPE---TFRAV-----FI---RAPAI-----------LSVGPGVEVLAEYPLPSEK----- 167 (248)
T ss_pred ccccc------------ccccc---ccceE-----Ee---cCCce-----------EeCCCcEEEEEEecccccc-----
Confidence 66653 11000 00000 10 11112 1123346888988765321
Q ss_pred CCCCeEEEEEecCCCceEEEEEEecCCCEEEEeecCCccCc
Q psy12875 257 LTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNAY 297 (308)
Q Consensus 257 l~~~~~via~s~~~~~~~v~ai~~~~~p~~GvQFHPE~~~~ 297 (308)
.-.++|+++.+...++++++..+ ++|+|||||++..
T Consensus 168 ---~~~~~a~~~y~~~~~~~aV~qgn--vlatqFHPEls~d 203 (248)
T PLN02832 168 ---ALYSSSTDAEGRDKVIVAVKQGN--LLATAFHPELTAD 203 (248)
T ss_pred ---cccccccccccCCceEEEEEeCC--EEEEEccCccCCc
Confidence 12345665555435788998775 9999999999865
No 72
>KOG3179|consensus
Probab=99.73 E-value=3.6e-17 Score=137.79 Aligned_cols=173 Identities=23% Similarity=0.287 Sum_probs=114.6
Q ss_pred CccchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccE
Q psy12875 41 YTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPV 120 (308)
Q Consensus 41 ~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~Pv 120 (308)
+..|. ..++..|.+-|......++....---+++|+++||++|+|+..|... ..+|...+.+++++... .++||
T Consensus 23 yGgy~-nvfvsllg~ege~wd~frV~~gefP~~~Dl~ky~gfvIsGS~~dAf~---d~dWI~KLcs~~kkld~--mkkkv 96 (245)
T KOG3179|consen 23 YGGYF-NVFVSLLGDEGEQWDLFRVIDGEFPQEEDLEKYDGFVISGSKHDAFS---DADWIKKLCSFVKKLDF--MKKKV 96 (245)
T ss_pred hcCHH-HHHHHHhcccCceeEEEEEecCCCCChhhhhhhceEEEeCCcccccc---cchHHHHHHHHHHHHHh--hccce
Confidence 34564 36678888888777766654331111236889999999999765433 33455566666666555 34899
Q ss_pred EEechhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCC
Q psy12875 121 LGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKS 200 (308)
Q Consensus 121 lGIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~ 200 (308)
+|||+|||+++.+ .||++.+..- ||. ||- | .+..
T Consensus 97 lGICFGHQiiara-~Gg~Vgra~K-------------G~~-----------------~~l-----------g-~iti--- 130 (245)
T KOG3179|consen 97 LGICFGHQIIARA-KGGKVGRAPK-------------GPD-----------------LGL-----------G-SITI--- 130 (245)
T ss_pred EEEeccHHHHHHh-hCCccccCCC-------------CCc-----------------ccc-----------c-ceEE---
Confidence 9999999999998 9988754321 110 000 0 1111
Q ss_pred cccceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEe
Q psy12875 201 CKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEH 280 (308)
Q Consensus 201 g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~ 280 (308)
+..+ .+....|..+|..+.. ...|++.|-. +|++++++|+|++|. ++.+..
T Consensus 131 -----vk~~------~~~~~yFG~~~~~l~I--------ikcHqDevle-------~PE~a~llasSe~ce---ve~fs~ 181 (245)
T KOG3179|consen 131 -----VKDA------EKPEKYFGEIPKSLNI--------IKCHQDEVLE-------LPEGAELLASSEKCE---VEMFSI 181 (245)
T ss_pred -----EEec------ccchhhcccchhhhhH--------Hhhcccceec-------CCchhhhhccccccc---eEEEEe
Confidence 0000 2344577766665543 6689999874 999999999999998 557777
Q ss_pred cCCCEEEEeecCCcc
Q psy12875 281 KEYPIVGIQFHPEKN 295 (308)
Q Consensus 281 ~~~p~~GvQFHPE~~ 295 (308)
.+ +++++|.|||++
T Consensus 182 ~~-~~l~fQGHPEyn 195 (245)
T KOG3179|consen 182 ED-HLLCFQGHPEYN 195 (245)
T ss_pred cc-eEEEecCCchhh
Confidence 76 699999999986
No 73
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I. In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.
Probab=99.72 E-value=3.9e-17 Score=144.94 Aligned_cols=87 Identities=26% Similarity=0.423 Sum_probs=59.7
Q ss_pred HHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCC-CchhHHHHHHHHHHHHHHHcCCCccEEEec
Q psy12875 46 AASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHP-NGYADAGRQILHLVDKINEEGVTFPVLGVC 124 (308)
Q Consensus 46 ~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~-~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC 124 (308)
+.++.++|+++|+.+..+++... .++++|+|++|||.+..+.. .........+.++++++.+.+ +||+|||
T Consensus 14 ~~~~~~al~~~G~~~~~i~~~~~------~l~~~d~lilpGG~~~~d~~~~~~~~~~~~~~~~l~~~~~~g--~pvlgIC 85 (227)
T TIGR01737 14 DRDTVYALRLLGVDAEIVWYEDG------SLPDYDGVVLPGGFSYGDYLRAGAIAAASPIMQEVREFAEKG--VPVLGIC 85 (227)
T ss_pred HHHHHHHHHHCCCeEEEEecCCC------CCCCCCEEEECCCCcccccccccchhcchHHHHHHHHHHHcC--CEEEEEC
Confidence 44667999999999998876532 26789999999996321110 000111124567777887754 9999999
Q ss_pred hhhhHHHHH-hcCCccc
Q psy12875 125 LGFELILQV-SNNDTDF 140 (308)
Q Consensus 125 ~G~Qll~~~-~~gg~~~ 140 (308)
.|+|+|+.+ .++|++.
T Consensus 86 ~G~QlLa~~GlL~G~l~ 102 (227)
T TIGR01737 86 NGFQILVEAGLLPGALL 102 (227)
T ss_pred HHHHHHHHcCCCCCcee
Confidence 999999985 2566553
No 74
>KOG1622|consensus
Probab=99.70 E-value=1.7e-17 Score=154.25 Aligned_cols=165 Identities=19% Similarity=0.309 Sum_probs=114.7
Q ss_pred HHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhh
Q psy12875 48 SYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGF 127 (308)
Q Consensus 48 ~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~ 127 (308)
-+.+.+++......++|.+.....+.. ..+.|||++||+.++... +-......+++ -++||||||+||
T Consensus 31 ~I~RrvRel~v~se~~p~~t~~~~i~~--~~~rgiIiSGGP~SVya~-dAP~~dp~if~---------~~vpvLGICYGm 98 (552)
T KOG1622|consen 31 VIDRRVRELNVQSEILPLTTPAKTITE--YGPRGIIISGGPNSVYAE-DAPSFDPAIFE---------LGVPVLGICYGM 98 (552)
T ss_pred HHHHHHHHHhhhhhhccCCChhhhhhc--CCceEEEEeCCCCccccC-cCCCCChhHhc---------cCCcceeehhHH
Confidence 456788888888888888776554432 478999999999766553 11111123444 249999999999
Q ss_pred hHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCcccceee
Q psy12875 128 ELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVN 207 (308)
Q Consensus 128 Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~~~~~~ 207 (308)
|+|+.. +||++.+... .+ +|+. ++..
T Consensus 99 Q~i~~~-~Gg~V~~~~~-RE---------~G~~---------------------------------eI~v---------- 124 (552)
T KOG1622|consen 99 QLINKL-NGGTVVKGMV-RE---------DGED---------------------------------EIEV---------- 124 (552)
T ss_pred HHHHHH-hCCccccccc-cC---------CCCc---------------------------------eEEc----------
Confidence 999999 9998753211 00 1110 1111
Q ss_pred ecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEecCCCEEE
Q psy12875 208 LNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEYPIVG 287 (308)
Q Consensus 208 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~~~p~~G 287 (308)
...+.+|+++.+.... .|+..|++.+.. ++++|+++|+|.+.. ++++.+..+++||
T Consensus 125 --------~~~~~lF~~~~~~~~~------~VlltHgdsl~~-------v~~g~kv~a~s~n~~---va~i~~e~kkiyg 180 (552)
T KOG1622|consen 125 --------DDSVDLFSGLHKTEFM------TVLLTHGDSLSK-------VPEGFKVVAFSGNKP---VAGILNELKKIYG 180 (552)
T ss_pred --------Cchhhhhhhhccccee------eeeeccccchhh-------ccccceeEEeecCcc---eeeehhhhhhhhc
Confidence 1244577776553320 247789998874 899999999987765 7799998889999
Q ss_pred EeecCCccCcccCCC
Q psy12875 288 IQFHPEKNAYEWTES 302 (308)
Q Consensus 288 vQFHPE~~~~~~~~~ 302 (308)
+|||||...++.|..
T Consensus 181 lqfhpEV~~t~~g~~ 195 (552)
T KOG1622|consen 181 LQFHPEVTLTPNGKE 195 (552)
T ss_pred CCCCCcccccCchhH
Confidence 999999999988863
No 75
>KOG1224|consensus
Probab=99.69 E-value=5e-17 Score=153.64 Aligned_cols=131 Identities=22% Similarity=0.308 Sum_probs=98.2
Q ss_pred ceeeecCCCCcc---hhh---hHhhhcCCCCeeeeehhHHHHHHHhCCcccccC---CcccceeeecccccCCCCCCcCc
Q psy12875 152 NLKFLPGAKRSS---LFS---QINEEGVTFPVLGVCLGFELILQVSNNDTDFRK---SCKVQQVNLNLKFLPGAKRSSLF 222 (308)
Q Consensus 152 ~l~~~pg~~~~~---~~~---~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~---~g~~~~~~~~~~~~~~~~~~~l~ 222 (308)
.+.++|||++|. .+. .+-...+++||||||||||.|+.+-|+.|...+ ||++..+.++..+. -+.++
T Consensus 67 aIVVgPGPG~P~~a~d~gI~~rl~~~~~~iPilGICLGfQal~l~hGA~v~~~n~p~HGrvs~i~~~~~~~----f~gi~ 142 (767)
T KOG1224|consen 67 AIVVGPGPGSPMCAADIGICLRLLLECRDIPILGICLGFQALGLVHGAHVVHANEPVHGRVSGIEHDGNIL----FSGIP 142 (767)
T ss_pred eEEecCCCCCCCcHHHHHHHHHHHHhcCCCceeeeehhhHhHhhhcccceecCCCcccceeeeEEecCcEE----EccCC
Confidence 378899999994 233 333346689999999999999999999998765 78888888753321 34455
Q ss_pred cCCChhHHHhhccCCceeeccceeeeeccccccCCCCC-eEEEEEecCCCceEEEEEEecCCCEEEEeecCCccCcccCC
Q psy12875 223 SQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTET-WNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNAYEWTE 301 (308)
Q Consensus 223 ~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~-~~via~s~~~~~~~v~ai~~~~~p~~GvQFHPE~~~~~~~~ 301 (308)
.+.++.+.+ .+||+..+++ +|-. +.+++++.|.+--++|.+.+++.|.||+|||||+..++.|-
T Consensus 143 sg~~~~fK~--------~RYHSL~in~-------~pid~l~il~t~~ddng~ilMsi~~~~fPhfG~qyHPES~~s~~g~ 207 (767)
T KOG1224|consen 143 SGRNSDFKV--------VRYHSLIINS-------LPIDLLPILWTIYDDNGHILMSIMHSSFPHFGLQYHPESIASTYGS 207 (767)
T ss_pred CCCccccee--------EEeEEEEecC-------CchhhhcceeEeecCCceEEEEeeccCCCccceeeChHHhhhhhhH
Confidence 555666664 8999999985 5533 45556654333246999999999999999999999988774
No 76
>KOG2387|consensus
Probab=99.62 E-value=2.9e-15 Score=139.22 Aligned_cols=202 Identities=20% Similarity=0.288 Sum_probs=112.1
Q ss_pred CccchHHHHHHHHHHcC----CeEEEEEcCCC----------hhHH---HHhcCCCCEEEEcCCCCCCCCCCchhHHHHH
Q psy12875 41 YTSYIAASYVKNIEAAG----ARVVPILIGQD----------REYY---AEILTQINGVVIPGGGTGFDHPNGYADAGRQ 103 (308)
Q Consensus 41 ~~~~i~~~~~~~l~~aG----~~~~~i~~~~~----------~~~~---~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~ 103 (308)
.|+|+ |.+++|+.++ -.+.+.++++. +... =+.+..+|||++|||.-+- -...
T Consensus 311 ~DsY~--Sv~KAL~Ha~~~~~~kl~i~wi~s~dLE~~t~~e~~~~~~~aW~~l~~adGilvPGGFG~R--------GveG 380 (585)
T KOG2387|consen 311 SDSYL--SVVKALEHAALAINRKLEIVWIDSSDLEPETEQEDPRKYHAAWQKLKSADGILVPGGFGDR--------GVEG 380 (585)
T ss_pred hHHHH--HHHHHHHHHHHHhcccceEEEEehhcccccccccChhHHHHHHHHhccCCeEEeCCccccc--------chhH
Confidence 46776 7888888654 44555555442 1111 1257889999999995211 1123
Q ss_pred HHHHHHHHHHcCCCccEEEechhhhHHHHHhcCCccccc-----cccccccccceeeecCCCCcchhhhHhhhcCCCCee
Q psy12875 104 ILHLVDKINEEGVTFPVLGVCLGFELILQVSNNDTDFRK-----SCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVL 178 (308)
Q Consensus 104 ~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~~~gg~~~~~-----~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~Pil 178 (308)
.+..++.+.+ +++|.||||+|||+-+.......+... ..+.+..++.+.++|.-...
T Consensus 381 ~i~Aak~ARe--n~iP~LGiCLGmQ~AvIEfaRnvLg~~dAnStEF~p~~~~~vVi~MPE~~~~---------------- 442 (585)
T KOG2387|consen 381 KILAAKWARE--NKIPFLGICLGMQLAVIEFARNVLGLKDANSTEFDPETKNPVVIFMPEHNKT---------------- 442 (585)
T ss_pred HHHHHHHHHh--cCCCeEeeehhhhHHHHHHHHHhhCCCCCCccccCCCCCCcEEEECcCCCcc----------------
Confidence 3444444444 569999999999998865222211111 11111112233343322110
Q ss_pred eeehhHHHHHHHhCCcccccCCcccceeeecccccCCCCCCcCccCCChhHHHhhccCCce--eeccceeeeeccccccC
Q psy12875 179 GVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLT--HNNHIWCITRQDMIKYG 256 (308)
Q Consensus 179 GiClG~Qll~~~~G~~v~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v--~~~H~~~v~~~~~~~~~ 256 (308)
.+||+.+ .+. ....|..-.+.+...+++.+.| .+.|+|.|+|+.....
T Consensus 443 -----------~mGgtMR---------LG~---------R~t~f~~~~s~~~kLYG~~~~V~ERHRHRyEVNP~~v~~l- 492 (585)
T KOG2387|consen 443 -----------HMGGTMR---------LGS---------RRTVFQDKDSKLRKLYGNVEFVDERHRHRYEVNPEMVKQL- 492 (585)
T ss_pred -----------cccceee---------ecc---------cceeeecCchHHHHHhCCchhhhhhhhcceecCHHHHHHH-
Confidence 0111211 111 1112222222233333333322 5678999988654322
Q ss_pred CCCCeEEEEEecCCCceEEEEEEecCCCEE-EEeecCCccCcccCCC
Q psy12875 257 LTETWNILTLSKYKSWEFVSTVEHKEYPIV-GIQFHPEKNAYEWTES 302 (308)
Q Consensus 257 l~~~~~via~s~~~~~~~v~ai~~~~~p~~-GvQFHPE~~~~~~~~~ 302 (308)
...++..++.+.++. -++.+|.+++|+| |+|||||+...+--++
T Consensus 493 e~~Gl~FvGkd~~g~--rmeI~El~~HP~fVg~QfHPE~~srp~kps 537 (585)
T KOG2387|consen 493 EQAGLSFVGKDVTGK--RMEIIELESHPFFVGVQFHPEFKSRPDKPS 537 (585)
T ss_pred HhcCcEEEeecCCCc--EEEEEEcCCCCceeeeccCHHHhcCCCCCC
Confidence 457899999976655 3789999999977 9999999998876664
No 77
>PRK05368 homoserine O-succinyltransferase; Provisional
Probab=99.62 E-value=4.7e-15 Score=135.64 Aligned_cols=142 Identities=17% Similarity=0.172 Sum_probs=94.6
Q ss_pred CCCCEEEEcCCCCCCCCC--CchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHHhcCCcccccccccccccccee
Q psy12875 77 TQINGVVIPGGGTGFDHP--NGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLK 154 (308)
Q Consensus 77 ~~~dGlilpGG~~~~~~~--~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~ 154 (308)
+++||+|+||++....+. -.|-.....+++++++ ..+|+||||+|+|+++.+ +||.. +...
T Consensus 98 ~~~DG~IITGAp~e~~~fedv~YW~El~~i~~w~~~-----~~~s~LgICwGaQa~a~a-lgGi~-k~~~---------- 160 (302)
T PRK05368 98 EKFDGLIITGAPVEQLPFEDVDYWDELKEILDWAKT-----HVTSTLFICWAAQAALYH-LYGIP-KYTL---------- 160 (302)
T ss_pred CCCCEEEEcCCCCCCccCCCCchHHHHHHHHHHHHH-----cCCCEEEEcHHHHHHHHH-cCCCc-cCCC----------
Confidence 579999999998542121 1232224455666554 348999999999999999 99852 1100
Q ss_pred eecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCcccceeeecccccCCCCCCcCccCCChhHHHhhc
Q psy12875 155 FLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFY 234 (308)
Q Consensus 155 ~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 234 (308)
....+||- .. ... ...++|++++++.+.+
T Consensus 161 -------------------~~K~~Gv~------------~~-------------~~~----~~~~pL~~g~~d~F~~--- 189 (302)
T PRK05368 161 -------------------PEKLSGVF------------EH-------------RVL----DPHHPLLRGFDDSFLV--- 189 (302)
T ss_pred -------------------CCceeEEE------------EE-------------EEc----CCCChhhcCCCCcccc---
Confidence 01223331 11 000 2367899999887765
Q ss_pred cCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEecCCCEEEEeecCCccCc
Q psy12875 235 QKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNAY 297 (308)
Q Consensus 235 ~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~~~p~~GvQFHPE~~~~ 297 (308)
.+.|...|..+.+ .++++++++|.|++++ ++++..++.+++++|+|||++..
T Consensus 190 -----phSr~~~V~~~~i---~~~~~l~vLA~S~~~g---v~~~~~~~~r~~~vQgHPEYd~~ 241 (302)
T PRK05368 190 -----PHSRYTEVREEDI---RAATGLEILAESEEAG---VYLFASKDKREVFVTGHPEYDAD 241 (302)
T ss_pred -----ceeehhhccHHHh---ccCCCCEEEecCCCCC---eEEEEeCCCCEEEEECCCCCCHH
Confidence 5667666654332 2679999999999998 66888777689999999999853
No 78
>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=99.58 E-value=1.7e-14 Score=127.34 Aligned_cols=80 Identities=26% Similarity=0.393 Sum_probs=55.2
Q ss_pred HHHHHHHHH-HcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCC-CchhHHHHHHHHHHHHHHHcCCCccEEEe
Q psy12875 46 AASYVKNIE-AAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHP-NGYADAGRQILHLVDKINEEGVTFPVLGV 123 (308)
Q Consensus 46 ~~~~~~~l~-~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~-~~~~~~~~~~~e~~~~~~~~g~~~PvlGI 123 (308)
+.+..++++ .+|+++..++.... .++++|+|++|||.+..+.. .........+.++++++.++ ++|++||
T Consensus 14 ~~d~~~a~~~~~G~~~~~v~~~~~------~l~~~D~lvipGG~~~~d~l~~~~~~~~~~~~~~l~~~~~~--g~~ilgI 85 (219)
T PRK03619 14 DRDMARALRDLLGAEPEYVWHKET------DLDGVDAVVLPGGFSYGDYLRCGAIAAFSPIMKAVKEFAEK--GKPVLGI 85 (219)
T ss_pred HHHHHHHHHhcCCCeEEEEecCcC------CCCCCCEEEECCCCchhhhhccchhhhchHHHHHHHHHHHC--CCEEEEE
Confidence 345578998 89999988875431 46789999999996321100 00011123567778887774 4999999
Q ss_pred chhhhHHHHH
Q psy12875 124 CLGFELILQV 133 (308)
Q Consensus 124 C~G~Qll~~~ 133 (308)
|.|+|+|+.+
T Consensus 86 C~G~qlLa~~ 95 (219)
T PRK03619 86 CNGFQILTEA 95 (219)
T ss_pred CHHHHHHHHc
Confidence 9999999985
No 79
>KOG0623|consensus
Probab=99.53 E-value=2.1e-14 Score=129.83 Aligned_cols=180 Identities=21% Similarity=0.356 Sum_probs=115.1
Q ss_pred HHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHH-HHHHHHHHHHHHHcCCCccEEEech
Q psy12875 47 ASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADA-GRQILHLVDKINEEGVTFPVLGVCL 125 (308)
Q Consensus 47 ~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~-~~~~~e~~~~~~~~g~~~PvlGIC~ 125 (308)
+|+..+|+..|+.+..+.... ++.+.|-+||||-+. ..+. +... .+...|.+++....| +|++|||.
T Consensus 15 ~si~nal~hlg~~i~~v~~P~-------DI~~a~rLIfPGVGn-fg~~--~D~L~~~Gf~eplr~Yiesg--kPfmgicv 82 (541)
T KOG0623|consen 15 RSIRNALRHLGFSIKDVQTPG-------DILNADRLIFPGVGN-FGPA--MDVLNRTGFAEPLRKYIESG--KPFMGICV 82 (541)
T ss_pred HHHHHHHHhcCceeeeccCch-------hhccCceEeecCccc-chHH--HHHHhhhhhHHHHHHHHhcC--CCeEeehh
Confidence 577899999999988665322 366889999999873 3221 2222 235667788888855 99999999
Q ss_pred hhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCcccce
Q psy12875 126 GFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQ 205 (308)
Q Consensus 126 G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~~~~ 205 (308)
|+|.|...+.+.. ...+|+..||-...+ .....-+|.+||
T Consensus 83 GlQaLF~gSvE~p----------~skGLgvipg~v~RF-----D~s~k~VPhIGW------------------------- 122 (541)
T KOG0623|consen 83 GLQALFDGSVENP----------PSKGLGVIPGIVGRF-----DASAKIVPHIGW------------------------- 122 (541)
T ss_pred hHHHHhcccccCC----------CcCcccccccceecc-----cCCCCcCCcccc-------------------------
Confidence 9999875422211 123577777654422 112223455554
Q ss_pred eeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEecCCCE
Q psy12875 206 VNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEYPI 285 (308)
Q Consensus 206 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~~~p~ 285 (308)
|-... .+++.+|...|.+ .+|+.|+|....... ...+++|++ |+...+..+||.+++..+ +
T Consensus 123 ---Nsc~v--~sd~effg~~p~~---------~~YFVHSyl~~ek~~--~len~~wki-at~kYG~E~Fi~ai~knN--~ 183 (541)
T KOG0623|consen 123 ---NSCQV--GSDSEFFGDVPNR---------HVYFVHSYLNREKPK--SLENKDWKI-ATCKYGSESFISAIRKNN--V 183 (541)
T ss_pred ---ccccc--CCcccccccCCCc---------eEEEEeeeccccccc--CCCCCCceE-eeeccCcHHHHHHHhcCc--e
Confidence 33322 3466677665543 248999995543221 113466765 776777777899998665 9
Q ss_pred EEEeecCCccCc
Q psy12875 286 VGIQFHPEKNAY 297 (308)
Q Consensus 286 ~GvQFHPE~~~~ 297 (308)
+++|||||++..
T Consensus 184 ~AtQFHPEKSG~ 195 (541)
T KOG0623|consen 184 HATQFHPEKSGE 195 (541)
T ss_pred eeEecccccccc
Confidence 999999999864
No 80
>KOG0370|consensus
Probab=99.52 E-value=1.1e-13 Score=138.09 Aligned_cols=157 Identities=20% Similarity=0.340 Sum_probs=109.6
Q ss_pred hHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEec
Q psy12875 45 IAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVC 124 (308)
Q Consensus 45 i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC 124 (308)
+.....+.|...|+++.++|++.+.. -.++|||+|++|+ -+|. ....+.+-+++.+.. ++||+|||
T Consensus 182 ~K~N~IRcL~~RGa~vtVvPw~~~i~-----~~~yDGlflSNGP--GdPe-----~~~~~v~~vr~lL~~--~~PvfGIC 247 (1435)
T KOG0370|consen 182 LKYNQIRCLVKRGAEVTVVPWDYPIA-----KEEYDGLFLSNGP--GDPE-----LCPLLVQNVRELLES--NVPVFGIC 247 (1435)
T ss_pred chHHHHHHHHHhCceEEEecCCcccc-----ccccceEEEeCCC--CCch-----hhHHHHHHHHHHHhC--CCCeEEEe
Confidence 45577899999999999999876543 2389999999886 3342 233566667777764 39999999
Q ss_pred hhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCcccc
Q psy12875 125 LGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQ 204 (308)
Q Consensus 125 ~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~~~ 204 (308)
+|+|+++.+ .|++.+......+.. ++|
T Consensus 248 lGHQllA~A-aGakT~KmKyGNRGh------------------------NiP---------------------------- 274 (1435)
T KOG0370|consen 248 LGHQLLALA-AGAKTYKMKYGNRGH------------------------NIP---------------------------- 274 (1435)
T ss_pred hhhHHHHHh-hCCceEEeeccccCC------------------------Ccc----------------------------
Confidence 999999999 999875432210000 111
Q ss_pred eeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEe-cCCCceEEEEEEecCC
Q psy12875 205 QVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLS-KYKSWEFVSTVEHKEY 283 (308)
Q Consensus 205 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s-~~~~~~~v~ai~~~~~ 283 (308)
....... +..++.++|.|++++.. +|.+++.+-.+ .|+.++ ++.|..+
T Consensus 275 ----------------~~~~~tG-------rc~ITSQNHGYAVD~~t-----Lp~gWk~lFvN~NDgSNE---GI~Hss~ 323 (1435)
T KOG0370|consen 275 ----------------CTCRATG-------RCFITSQNHGYAVDPAT-----LPAGWKPLFVNANDGSNE---GIMHSSK 323 (1435)
T ss_pred ----------------ceeccCc-------eEEEEecCCceeecccc-----ccCCCchheeecccCCCc---eEecCCC
Confidence 0000000 11124679999999866 78888887777 566655 9999999
Q ss_pred CEEEEeecCCccCccc
Q psy12875 284 PIVGIQFHPEKNAYEW 299 (308)
Q Consensus 284 p~~GvQFHPE~~~~~~ 299 (308)
|++.+|||||....+.
T Consensus 324 P~fSvQFHPEat~GP~ 339 (1435)
T KOG0370|consen 324 PFFSVQFHPEATPGPH 339 (1435)
T ss_pred CceeeecCCcCCCCCc
Confidence 9999999999987654
No 81
>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=99.45 E-value=5.5e-12 Score=109.14 Aligned_cols=91 Identities=26% Similarity=0.422 Sum_probs=67.6
Q ss_pred CCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcC-CCCEEEEcCCCCCCCCCC
Q psy12875 17 DTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILT-QINGVVIPGGGTGFDHPN 95 (308)
Q Consensus 17 ~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~-~~dGlilpGG~~~~~~~~ 95 (308)
.+|.|+|+..|.++ . +.....+++++|++++.+++.+. .+. ++|+|++|||-|.-
T Consensus 1 ~~~kvaVi~fpGtN-------~-------d~d~~~A~~~aG~~~~~V~~~d~------~~~~~~d~vv~pGGFSyG---- 56 (231)
T COG0047 1 ARPKVAVLRFPGTN-------C-------DYDMAAAFERAGFEAEDVWHSDL------LLGRDFDGVVLPGGFSYG---- 56 (231)
T ss_pred CCceEEEEEcCCcC-------c-------hHHHHHHHHHcCCCceEEEeeec------ccCCCccEEEEcCCCCcc----
Confidence 37999999888764 1 11335788899999999997653 244 69999999997532
Q ss_pred chhHH-----HHHHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875 96 GYADA-----GRQILHLVDKINEEGVTFPVLGVCLGFELILQV 133 (308)
Q Consensus 96 ~~~~~-----~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~ 133 (308)
+|.+. ...+.+.++++.++ ++|+||||.|+|+|..+
T Consensus 57 DyLr~Gaiaa~~~v~~~v~~~a~~--g~~vLGICNGfQiL~e~ 97 (231)
T COG0047 57 DYLRAGAIAAIAPVMDEVREFAEK--GKPVLGICNGFQILSEA 97 (231)
T ss_pred cccCcchHHhhHHHHHHHHHHHHC--CCeEEEEcchhHHHHHc
Confidence 34442 23566777788874 49999999999999965
No 82
>PRK13526 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.43 E-value=3.1e-12 Score=108.44 Aligned_cols=85 Identities=22% Similarity=0.311 Sum_probs=58.9
Q ss_pred CCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCch
Q psy12875 18 TPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGY 97 (308)
Q Consensus 18 ~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~ 97 (308)
...|||++-.... .+-.++|++.|+++..+. +.+ .++++|+|++|||.+. ..
T Consensus 2 ~~~igVLalqG~~----------------~Eh~~al~~lG~~v~~v~---~~~----~l~~~D~LILPGG~~t-----~~ 53 (179)
T PRK13526 2 TQKVGVLAIQGGY----------------QKHADMFKSLGVEVKLVK---FNN----DFDSIDRLVIPGGEST-----TL 53 (179)
T ss_pred CcEEEEEECCccH----------------HHHHHHHHHcCCcEEEEC---CHH----HHhCCCEEEECCChHH-----HH
Confidence 3679998775331 135689999999877654 333 3678999999998531 11
Q ss_pred hHHH--HHHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875 98 ADAG--RQILHLVDKINEEGVTFPVLGVCLGFELILQV 133 (308)
Q Consensus 98 ~~~~--~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~ 133 (308)
.+.. ..+.+.++++.+ + +|++|||.|||+|+..
T Consensus 54 ~~ll~~~~l~~~Ik~~~~-~--kpilGICaG~qlL~~~ 88 (179)
T PRK13526 54 LNLLNKHQIFDKLYNFCS-S--KPVFGTCAGSIILSKG 88 (179)
T ss_pred HHHhhhcCcHHHHHHHHc-C--CcEEEEcHHHHHHHcc
Confidence 1222 246777887764 3 7999999999999975
No 83
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=99.41 E-value=3.2e-12 Score=115.35 Aligned_cols=100 Identities=20% Similarity=0.344 Sum_probs=68.0
Q ss_pred CCCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCC
Q psy12875 16 TDTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPN 95 (308)
Q Consensus 16 ~~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~ 95 (308)
++++.|+|+..+... .+.+..++++++|+.+..+++.... .....++++|+|++|||.+..+..
T Consensus 1 ~~~~kvaVl~~pG~n--------------~d~e~~~Al~~aG~~v~~v~~~~~~-~~~~~l~~~DgLvipGGfs~gD~l- 64 (261)
T PRK01175 1 MESIRVAVLRMEGTN--------------CEDETVKAFRRLGVEPEYVHINDLA-AERKSVSDYDCLVIPGGFSAGDYI- 64 (261)
T ss_pred CCCCEEEEEeCCCCC--------------CHHHHHHHHHHCCCcEEEEeecccc-ccccchhhCCEEEECCCCCccccc-
Confidence 357899999987653 1224478999999999988865321 122247789999999996432221
Q ss_pred chhH----HH-HHHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875 96 GYAD----AG-RQILHLVDKINEEGVTFPVLGVCLGFELILQV 133 (308)
Q Consensus 96 ~~~~----~~-~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~ 133 (308)
.+.. .. ..+.+.++++.+++ +||||||+|+|+|+.+
T Consensus 65 ~~g~~~~~~l~~~l~~~Ik~f~~~g--kpVLGICnG~QlLa~~ 105 (261)
T PRK01175 65 RAGAIFAARLKAVLRKDIEEFIDEG--YPIIGICNGFQVLVEL 105 (261)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHCC--CeEEEECHHHHHHHHC
Confidence 1111 11 22346678888854 9999999999999975
No 84
>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase. Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site
Probab=99.31 E-value=7.9e-12 Score=111.76 Aligned_cols=90 Identities=23% Similarity=0.292 Sum_probs=60.4
Q ss_pred HHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhH--HHHH-HHHHHHHHHHcCCCccEEE
Q psy12875 46 AASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYAD--AGRQ-ILHLVDKINEEGVTFPVLG 122 (308)
Q Consensus 46 ~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~--~~~~-~~e~~~~~~~~g~~~PvlG 122 (308)
+.++.++|+++|+.+.++++.... ..+..++++|||+||||.+..+.. .... ..+. +.+.++++.+++ +||+|
T Consensus 12 ~~~~~~al~~aG~~v~~v~~~~~~-~~~~~l~~~d~liipGG~~~~d~l-~~~~~~~~~~~~~~~l~~~~~~g--~pvlG 87 (238)
T cd01740 12 DRDMAYAFELAGFEAEDVWHNDLL-AGRKDLDDYDGVVLPGGFSYGDYL-RAGAIAAASPLLMEEVKEFAERG--GLVLG 87 (238)
T ss_pred HHHHHHHHHHcCCCEEEEeccCCc-cccCCHhhCCEEEECCCCCccccc-ccccccccChhHHHHHHHHHhCC--CeEEE
Confidence 346788999999999999875431 112246789999999997421110 0000 1112 667788888854 99999
Q ss_pred echhhhHHHHHh-cCCcc
Q psy12875 123 VCLGFELILQVS-NNDTD 139 (308)
Q Consensus 123 IC~G~Qll~~~~-~gg~~ 139 (308)
||.|+|+|+.+. ++|+.
T Consensus 88 IC~G~QlL~~~gll~g~~ 105 (238)
T cd01740 88 ICNGFQILVELGLLPGAL 105 (238)
T ss_pred ECcHHHHHHHcCCCcccc
Confidence 999999999852 44544
No 85
>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]
Probab=99.29 E-value=7.8e-11 Score=98.71 Aligned_cols=75 Identities=28% Similarity=0.525 Sum_probs=58.1
Q ss_pred HHHHHHHHcC-CeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHH--HHHHHHHHHHHcCCCccEEEec
Q psy12875 48 SYVKNIEAAG-ARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGR--QILHLVDKINEEGVTFPVLGVC 124 (308)
Q Consensus 48 ~~~~~l~~aG-~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~--~~~e~~~~~~~~g~~~PvlGIC 124 (308)
...++++++| +++..+.. .+ .++++||||+|||.| +...+..+ ++++.++++.+.| +|+||+|
T Consensus 14 EH~~~l~~~~~~e~~~Vk~---~~----dL~~~d~LIiPGGES-----TTi~rL~~~~gl~e~l~~~~~~G--~Pv~GTC 79 (194)
T COG0311 14 EHLEALEKAGGAEVVEVKR---PE----DLEGVDGLIIPGGES-----TTIGRLLKRYGLLEPLREFIADG--LPVFGTC 79 (194)
T ss_pred HHHHHHHhhcCCceEEEcC---HH----HhccCcEEEecCccH-----HHHHHHHHHcCcHHHHHHHHHcC--CceEEec
Confidence 5578999995 88877753 22 578999999999985 24555443 6788899988855 9999999
Q ss_pred hhhhHHHHHhcC
Q psy12875 125 LGFELILQVSNN 136 (308)
Q Consensus 125 ~G~Qll~~~~~g 136 (308)
.||-+|+....+
T Consensus 80 AGlIlLakei~~ 91 (194)
T COG0311 80 AGLILLAKEILD 91 (194)
T ss_pred hhhhhhhhhhcC
Confidence 999999977344
No 86
>PF01174 SNO: SNO glutamine amidotransferase family; InterPro: IPR002161 Members of this family are involved in the pyridoxine biosynthetic pathway [, ]. The regulation of cellular growth and proliferation in response to environmental cues is critical for development and the maintenance of viability in all organisms. In unicellular organisms, such as the budding yeast Saccharomyces cerevisiae (Baker's yeast), growth and proliferation are regulated by nutrient availability. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes PdxT, the glutaminase subunit of the PLP synthase. It is involved in the hydrolysis of glutamine to glutamate and ammonia, channeling an ammonia molecule to PdxS. ; PDB: 2ISS_D 4ADS_J 2ABW_B 2YWD_A 2NV0_A 2NV2_N 1R9G_A 1Q7R_A 2YWJ_A.
Probab=99.28 E-value=2.6e-11 Score=102.54 Aligned_cols=73 Identities=27% Similarity=0.506 Sum_probs=52.7
Q ss_pred HHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHH--HHHHHHHHHHHcCCCccEEEech
Q psy12875 48 SYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGR--QILHLVDKINEEGVTFPVLGVCL 125 (308)
Q Consensus 48 ~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~--~~~e~~~~~~~~g~~~PvlGIC~ 125 (308)
...+.|+++|++++.+... + .|+++||||+|||.| +.+.+..+ .+++.++++.++| ++||||+|.
T Consensus 10 EH~~~l~~lg~~~~~Vr~~---~----dL~~~dgLIiPGGES-----Tti~~ll~~~gL~~~l~~~~~~g-~~Pv~GTCA 76 (188)
T PF01174_consen 10 EHIRMLERLGAEVVEVRTP---E----DLEGLDGLIIPGGES-----TTIGKLLRRYGLFEPLREFIRSG-SKPVWGTCA 76 (188)
T ss_dssp HHHHHHHHTTSEEEEE-SG---G----GGTT-SEEEE-SS-H-----HHHHHHHHHTTHHHHHHHHHHTT---EEEEETH
T ss_pred HHHHHHHHcCCCeEEeCCH---H----HHccCCEEEECCCcH-----HHHHHHHHHcCCHHHHHHHHHcC-CCceeehhH
Confidence 5578999999999777632 2 478899999999985 23555443 6788899988843 389999999
Q ss_pred hhhHHHHH
Q psy12875 126 GFELILQV 133 (308)
Q Consensus 126 G~Qll~~~ 133 (308)
||-+|+..
T Consensus 77 GlIlLa~~ 84 (188)
T PF01174_consen 77 GLILLAKE 84 (188)
T ss_dssp HHHHHEEE
T ss_pred HHHHhhhh
Confidence 99999987
No 87
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.17 E-value=1.3e-10 Score=98.67 Aligned_cols=89 Identities=28% Similarity=0.441 Sum_probs=62.9
Q ss_pred CCCCccchHHHHHHHHHHcCCeEEEEEcCC-ChhHHHHhcCCCCEEEE-cCCCCCCCCCCchhHHHHHHHHHHHHHHHcC
Q psy12875 38 YPNYTSYIAASYVKNIEAAGARVVPILIGQ-DREYYAEILTQINGVVI-PGGGTGFDHPNGYADAGRQILHLVDKINEEG 115 (308)
Q Consensus 38 ~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~-~~~~~~~~l~~~dGlil-pGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g 115 (308)
.+++|||+. ++++.+++.|+++.+++.+. +.+.+ ...++|+|++ ||.+. |. +++ ...+.++++ .
T Consensus 7 IDNyDSFty-NLv~yl~~lg~~v~V~rnd~~~~~~~--~~~~pd~iviSPGPG~---P~-d~G----~~~~~i~~~-~-- 72 (191)
T COG0512 7 IDNYDSFTY-NLVQYLRELGAEVTVVRNDDISLELI--EALKPDAIVISPGPGT---PK-DAG----ISLELIRRF-A-- 72 (191)
T ss_pred EECccchHH-HHHHHHHHcCCceEEEECCccCHHHH--hhcCCCEEEEcCCCCC---hH-Hcc----hHHHHHHHh-c--
Confidence 456788864 78999999999999888652 21212 2346899999 77653 21 111 245555555 3
Q ss_pred CCccEEEechhhhHHHHHhcCCcccc
Q psy12875 116 VTFPVLGVCLGFELILQVSNNDTDFR 141 (308)
Q Consensus 116 ~~~PvlGIC~G~Qll~~~~~gg~~~~ 141 (308)
.++||||||+|+|.|+.+ +||++.+
T Consensus 73 ~~~PiLGVCLGHQai~~~-fGg~V~~ 97 (191)
T COG0512 73 GRIPILGVCLGHQAIAEA-FGGKVVR 97 (191)
T ss_pred CCCCEEEECccHHHHHHH-hCCEEEe
Confidence 359999999999999999 9999854
No 88
>PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A.
Probab=99.11 E-value=6.1e-10 Score=100.35 Aligned_cols=99 Identities=22% Similarity=0.281 Sum_probs=59.7
Q ss_pred CCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCch
Q psy12875 18 TPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGY 97 (308)
Q Consensus 18 ~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~ 97 (308)
||.++|+.-|... .+.....+++.+|+++..+.+.+- -.-+..++++|+|+||||.+..+.. .-
T Consensus 1 kpkV~Vl~~pGtN--------------ce~e~~~A~~~aG~~~~~v~~~dl-~~~~~~l~~~~~lvipGGFS~gD~l-~s 64 (259)
T PF13507_consen 1 KPKVAVLRFPGTN--------------CERETAAAFENAGFEPEIVHINDL-LSGESDLDDFDGLVIPGGFSYGDYL-RS 64 (259)
T ss_dssp --EEEEEE-TTEE--------------EHHHHHHHHHCTT-EEEEEECCHH-HTTS--GCC-SEEEE-EE-GGGGTT-ST
T ss_pred CCEEEEEECCCCC--------------CHHHHHHHHHHcCCCceEEEEEec-ccccCchhhCcEEEECCccCccccc-hH
Confidence 6889999887653 234557899999999999876421 0111268899999999997532221 01
Q ss_pred hHH-HH------HHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875 98 ADA-GR------QILHLVDKINEEGVTFPVLGVCLGFELILQV 133 (308)
Q Consensus 98 ~~~-~~------~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~ 133 (308)
.+. .. .+.+.+++++++ .+.|+||||.|||+|...
T Consensus 65 g~~~a~~~~~~~~~~~~i~~f~~~-~g~~vLGIcNGfQiL~~~ 106 (259)
T PF13507_consen 65 GAIAAARLLFNSPLMDAIREFLER-PGGFVLGICNGFQILVEL 106 (259)
T ss_dssp THHHHHHHCCSCCCHHHHHHHHHC-TT-EEEEECHHHHHHCCC
T ss_pred HHHHHHHhhccHHHHHHHHHHHhc-CCCeEEEEchHhHHHHHh
Confidence 111 11 235667778875 259999999999999965
No 89
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=98.88 E-value=1.8e-09 Score=93.02 Aligned_cols=48 Identities=23% Similarity=0.376 Sum_probs=40.6
Q ss_pred cceeeecCCCCcch----hhhHhhhcCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875 151 LNLKFLPGAKRSSL----FSQINEEGVTFPVLGVCLGFELILQVSNNDTDFR 198 (308)
Q Consensus 151 ~~l~~~pg~~~~~~----~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~ 198 (308)
..+.++|||++|.. ...++....++|+||||+|||+|+.++||++.+.
T Consensus 45 d~iils~GPg~p~~~~~~~~~~~~~~~~~PiLGIClG~Q~la~a~Gg~v~~~ 96 (187)
T PRK08007 45 QKIVISPGPCTPDEAGISLDVIRHYAGRLPILGVCLGHQAMAQAFGGKVVRA 96 (187)
T ss_pred CEEEEcCCCCChHHCCccHHHHHHhcCCCCEEEECHHHHHHHHHcCCEEEeC
Confidence 36999999999873 3455555678999999999999999999999875
No 90
>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.
Probab=98.84 E-value=9.4e-09 Score=89.40 Aligned_cols=82 Identities=22% Similarity=0.318 Sum_probs=56.3
Q ss_pred chHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEe
Q psy12875 44 YIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGV 123 (308)
Q Consensus 44 ~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGI 123 (308)
|..+.-.++|+++|++++.+....+. .+.++|+||||||...... ......+.+.+.++++.+++ +||+||
T Consensus 11 f~y~e~~~~l~~~G~~v~~~s~~~~~-----~l~~~D~lilPGG~~~~~~--~~L~~~~~~~~~i~~~~~~g--~pilgI 81 (198)
T cd03130 11 FYYPENLELLEAAGAELVPFSPLKDE-----ELPDADGLYLGGGYPELFA--EELSANQSMRESIRAFAESG--GPIYAE 81 (198)
T ss_pred cccHHHHHHHHHCCCEEEEECCCCCC-----CCCCCCEEEECCCchHHHH--HHHHhhHHHHHHHHHHHHcC--CCEEEE
Confidence 33456678999999998887643222 2445999999998521100 11111235677788888754 999999
Q ss_pred chhhhHHHHHh
Q psy12875 124 CLGFELILQVS 134 (308)
Q Consensus 124 C~G~Qll~~~~ 134 (308)
|.|||+|...+
T Consensus 82 CgG~qlL~~~~ 92 (198)
T cd03130 82 CGGLMYLGESL 92 (198)
T ss_pred cccHHHHHHHh
Confidence 99999999883
No 91
>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP.
Probab=98.84 E-value=3.9e-08 Score=104.54 Aligned_cols=101 Identities=22% Similarity=0.302 Sum_probs=67.7
Q ss_pred CCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCC--------hhHHHHhcCCCCEEEEcCCC
Q psy12875 17 DTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQD--------REYYAEILTQINGVVIPGGG 88 (308)
Q Consensus 17 ~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~--------~~~~~~~l~~~dGlilpGG~ 88 (308)
.||.++|+..|.++ . +..-..+++++|+.+..+++.+- .+.+...++++++|++|||.
T Consensus 976 ~kpkvaIl~~pGtN-------c-------e~d~a~Af~~aG~~~~~v~~~dl~~~~i~~s~~~~~~~l~~~~~l~~pGGF 1041 (1239)
T TIGR01857 976 EKPRVVIPVFPGTN-------S-------EYDSAKAFEKEGAEVNLVIFRNLNEEALVESVETMVDEIDKSQILMLPGGF 1041 (1239)
T ss_pred CCCeEEEEECCCCC-------C-------HHHHHHHHHHcCCceEEEEEecCcccccccchhhhhcccccCcEEEEcCcc
Confidence 58999999888664 1 22446788889999888876541 11222357899999999998
Q ss_pred CCCCCCCchhHH----H--HHHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875 89 TGFDHPNGYADA----G--RQILHLVDKINEEGVTFPVLGVCLGFELILQV 133 (308)
Q Consensus 89 ~~~~~~~~~~~~----~--~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~ 133 (308)
+.-+....-..+ . ..+.+.++++.+ ++.++||||.|||+|...
T Consensus 1042 SyGD~l~~~~~~~aa~~~n~~~~~~~~~f~~--~d~~~LGICNGfQ~L~~l 1090 (1239)
T TIGR01857 1042 SAGDEPDGSAKFIAAILRNPKVRVAIDSFLA--RDGLILGICNGFQALVKS 1090 (1239)
T ss_pred CcccccchhHHHHHHHhhChHHHHHHHHHHh--CCCcEEEechHHHHHHHc
Confidence 643321001111 1 135566667776 459999999999999876
No 92
>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit.
Probab=98.82 E-value=3e-08 Score=106.60 Aligned_cols=96 Identities=18% Similarity=0.199 Sum_probs=65.8
Q ss_pred CCCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCC
Q psy12875 16 TDTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPN 95 (308)
Q Consensus 16 ~~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~ 95 (308)
.++|.++|+..|..+ . +.....+++.+|+.+..+++.+-.. -+..|++++||++|||.+.-+
T Consensus 1053 ~~~p~vail~~pG~N-------~-------~~e~~~Af~~aGf~~~~v~~~dl~~-~~~~l~~~~~lv~~GGFSygD--- 1114 (1310)
T TIGR01735 1053 GVRPKVAILREQGVN-------G-------DREMAAAFDRAGFEAWDVHMSDLLA-GRVHLDEFRGLAACGGFSYGD--- 1114 (1310)
T ss_pred CCCceEEEEECCCCC-------C-------HHHHHHHHHHhCCCcEEEEEecccc-CCcchhheeEEEEcCCCCCcc---
Confidence 468999999888654 1 2244578889999988888653111 011478899999999975332
Q ss_pred chhHHHH----------HHHHHHHHHHHcCCCccEEEechhhhHHH
Q psy12875 96 GYADAGR----------QILHLVDKINEEGVTFPVLGVCLGFELIL 131 (308)
Q Consensus 96 ~~~~~~~----------~~~e~~~~~~~~g~~~PvlGIC~G~Qll~ 131 (308)
+....+ .+.+.++++.++ .+.++||||.|||+|.
T Consensus 1115 -~lgsg~~~a~~i~~~~~~~~~~~~f~~~-~d~~~LGiCNGfQ~L~ 1158 (1310)
T TIGR01735 1115 -VLGAGKGWAKSILFNPRLRDQFQAFFKR-PDTFSLGVCNGCQMLS 1158 (1310)
T ss_pred -chhHHHHHHHHHHhChHHHHHHHHHHhC-CCceEEEecHHHHHHH
Confidence 222221 345556666633 4599999999999999
No 93
>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional
Probab=98.81 E-value=3.9e-08 Score=105.99 Aligned_cols=97 Identities=19% Similarity=0.255 Sum_probs=66.2
Q ss_pred CCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCc
Q psy12875 17 DTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNG 96 (308)
Q Consensus 17 ~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~ 96 (308)
.+|.++|+..|..+ . +.....+++.+|+.+..+.+.+-.. -+..++++++|++|||.+.-+
T Consensus 1034 ~~pkv~il~~pG~N-------~-------~~e~~~Af~~aG~~~~~v~~~dl~~-~~~~l~~~~~l~~~GGFS~gD---- 1094 (1290)
T PRK05297 1034 ARPKVAILREQGVN-------S-------HVEMAAAFDRAGFDAIDVHMSDLLA-GRVTLEDFKGLVACGGFSYGD---- 1094 (1290)
T ss_pred CCCeEEEEECCCCC-------C-------HHHHHHHHHHcCCCeEEEEeecCcC-CCCChhhCcEEEECCccCCcc----
Confidence 47899999887654 1 2344678999999998887653110 012478999999999975432
Q ss_pred hhHHHH----------HHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875 97 YADAGR----------QILHLVDKINEEGVTFPVLGVCLGFELILQV 133 (308)
Q Consensus 97 ~~~~~~----------~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~ 133 (308)
+....+ .+.+.++++.++ ++.++||||.|||+|...
T Consensus 1095 ~lgsg~~~a~~~~~n~~~~~~~~~f~~~-~d~~~LGiCNGfQ~L~~l 1140 (1290)
T PRK05297 1095 VLGAGEGWAKSILFNPRLRDQFEAFFAR-PDTFALGVCNGCQMMSNL 1140 (1290)
T ss_pred cchHHHHHHHHhhccHHHHHHHHHHHhC-CCceEEEEcHHHHHHHHh
Confidence 222211 345556665643 459999999999999976
No 94
>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional
Probab=98.78 E-value=6e-08 Score=103.82 Aligned_cols=98 Identities=21% Similarity=0.254 Sum_probs=67.3
Q ss_pred CCCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCC
Q psy12875 16 TDTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPN 95 (308)
Q Consensus 16 ~~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~ 95 (308)
..+|.++|+..|..+ .+.....+++.+|+.+..+++.+-. .-...|++++||++|||.+.-+.
T Consensus 1035 ~~~pkVaVl~~pGtN--------------~~~e~~~Af~~aGf~~~~V~~~dl~-~~~~~L~~~~glv~pGGFSyGD~-- 1097 (1307)
T PLN03206 1035 TSKPKVAIIREEGSN--------------GDREMAAAFYAAGFEPWDVTMSDLL-NGRISLDDFRGIVFVGGFSYADV-- 1097 (1307)
T ss_pred CCCCeEEEEECCCCC--------------CHHHHHHHHHHcCCceEEEEeeecc-cccccccceeEEEEcCcCCCccc--
Confidence 357999999887654 1234467899999999888765311 11224789999999999753322
Q ss_pred chhHHH----------HHHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875 96 GYADAG----------RQILHLVDKINEEGVTFPVLGVCLGFELILQV 133 (308)
Q Consensus 96 ~~~~~~----------~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~ 133 (308)
.+.. ..+.+.++++.++ .+.++||||.|||+|...
T Consensus 1098 --l~sg~~wa~~i~~n~~~~~~~~~f~~~-~d~~~LGICNGfQiL~~l 1142 (1307)
T PLN03206 1098 --LDSAKGWAGSIRFNEPLLQQFQEFYNR-PDTFSLGVCNGCQLMALL 1142 (1307)
T ss_pred --cchHHHHHHHHHhChHHHHHHHHHHhC-CCceEEEEcHHHHHHHHc
Confidence 2211 2445556677743 359999999999999865
No 95
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=98.78 E-value=6.8e-09 Score=90.04 Aligned_cols=48 Identities=27% Similarity=0.334 Sum_probs=40.0
Q ss_pred cceeeecCCCCcch----hhhHhhhcCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875 151 LNLKFLPGAKRSSL----FSQINEEGVTFPVLGVCLGFELILQVSNNDTDFR 198 (308)
Q Consensus 151 ~~l~~~pg~~~~~~----~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~ 198 (308)
..+.++|||++|.. ...++....++|+||||||||+|+.++||+|.+.
T Consensus 45 d~iIlsgGP~~p~~~~~~~~~i~~~~~~~PvLGIClG~Qlla~~lGg~V~~~ 96 (195)
T PRK07649 45 DFLMISPGPCSPNEAGISMEVIRYFAGKIPIFGVCLGHQSIAQVFGGEVVRA 96 (195)
T ss_pred CEEEECCCCCChHhCCCchHHHHHhcCCCCEEEEcHHHHHHHHHcCCEEeeC
Confidence 36999999999763 3344555678999999999999999999999875
No 96
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=98.76 E-value=7.4e-09 Score=89.48 Aligned_cols=48 Identities=25% Similarity=0.356 Sum_probs=40.0
Q ss_pred cceeeecCCCCcch----hhhHhhhcCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875 151 LNLKFLPGAKRSSL----FSQINEEGVTFPVLGVCLGFELILQVSNNDTDFR 198 (308)
Q Consensus 151 ~~l~~~pg~~~~~~----~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~ 198 (308)
..+.++|||++|.. ...++....++|+||||+|||+|+.++||+|.+.
T Consensus 45 ~~iilsgGP~~~~~~~~~~~~i~~~~~~~PiLGIC~G~Qlla~~~GG~v~~~ 96 (191)
T PRK06774 45 SHLVISPGPCTPNEAGISLAVIRHFADKLPILGVCLGHQALGQAFGARVVRA 96 (191)
T ss_pred CeEEEcCCCCChHhCCCchHHHHHhcCCCCEEEECHHHHHHHHHhCCEEEeC
Confidence 35999999998763 3455555779999999999999999999999774
No 97
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=98.75 E-value=7.9e-09 Score=95.05 Aligned_cols=48 Identities=23% Similarity=0.400 Sum_probs=39.8
Q ss_pred cceeeecCCCCcch----hhhHhhh-cCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875 151 LNLKFLPGAKRSSL----FSQINEE-GVTFPVLGVCLGFELILQVSNNDTDFR 198 (308)
Q Consensus 151 ~~l~~~pg~~~~~~----~~~i~~~-~~~~PilGiClG~Qll~~~~G~~v~~~ 198 (308)
+++.+++||++|.. +..+++. ..++|++|||||||||+.|+|++..++
T Consensus 222 DGiflSNGPGDP~~~~~~i~~ik~l~~~~iPifGICLGHQllalA~Ga~T~Km 274 (368)
T COG0505 222 DGIFLSNGPGDPAPLDYAIETIKELLGTKIPIFGICLGHQLLALALGAKTYKM 274 (368)
T ss_pred CEEEEeCCCCChhHHHHHHHHHHHHhccCCCeEEEcHHHHHHHHhcCCceeec
Confidence 47999999999984 4455555 445699999999999999999998776
No 98
>KOG3210|consensus
Probab=98.74 E-value=6.5e-08 Score=79.80 Aligned_cols=59 Identities=19% Similarity=0.290 Sum_probs=41.8
Q ss_pred hcCCCCEEEEcCCCCCCCCCCchhHH--HHHHHHHHHHHHHcCCCccEEEechhhhHHHHHhcCCcc
Q psy12875 75 ILTQINGVVIPGGGTGFDHPNGYADA--GRQILHLVDKINEEGVTFPVLGVCLGFELILQVSNNDTD 139 (308)
Q Consensus 75 ~l~~~dGlilpGG~~~~~~~~~~~~~--~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~~~gg~~ 139 (308)
+++++||+|+|||.+. .+... ...+++.+.++..++ .+|+||.|.||-+|..-..|++.
T Consensus 53 D~aq~DaLIIPGGEST-----~mslia~~tgL~d~L~~fVhn~-~k~~WGTCAGmI~LS~ql~nek~ 113 (226)
T KOG3210|consen 53 DLAQCDALIIPGGEST-----AMSLIAERTGLYDDLYAFVHNP-SKVTWGTCAGMIYLSQQLSNEKK 113 (226)
T ss_pred HHhhCCEEEecCCchh-----HHHHHHhhhhhHHHHHHHhcCC-CccceeechhhhhhhhhhcCCcc
Confidence 5789999999999852 23322 124566666666653 59999999999999877455554
No 99
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=98.73 E-value=1e-08 Score=88.42 Aligned_cols=47 Identities=26% Similarity=0.379 Sum_probs=39.7
Q ss_pred ceeeecCCCCcch----hhhHhhhcCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875 152 NLKFLPGAKRSSL----FSQINEEGVTFPVLGVCLGFELILQVSNNDTDFR 198 (308)
Q Consensus 152 ~l~~~pg~~~~~~----~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~ 198 (308)
.+.++|||+.|.. ...+++...++|+||||+|||+|+.++||+|.+.
T Consensus 46 ~iilsgGpg~p~~~~~~~~~i~~~~~~~PvLGIC~G~Qll~~~~GG~v~~~ 96 (188)
T TIGR00566 46 LIVISPGPCTPNEAGISLEAIRHFAGKLPILGVCLGHQAMGQAFGGDVVRA 96 (188)
T ss_pred EEEEcCCCCChhhcchhHHHHHHhccCCCEEEECHHHHHHHHHcCCEEeeC
Confidence 5899999998763 4456655678999999999999999999999774
No 100
>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.
Probab=98.71 E-value=8.3e-08 Score=83.19 Aligned_cols=73 Identities=18% Similarity=0.313 Sum_probs=54.1
Q ss_pred HHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHH--HHHHHHHHHHHHHcCCCccEEEech
Q psy12875 48 SYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADA--GRQILHLVDKINEEGVTFPVLGVCL 125 (308)
Q Consensus 48 ~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~--~~~~~e~~~~~~~~g~~~PvlGIC~ 125 (308)
++.++++..|++++.+....+ +.++|+|+||||.+ ... .... ...+.+.++++.+++ +||+|||.
T Consensus 14 ~l~~~~~~~G~~~~~~~~~~~-------~~~~d~lilpGg~~-~~~---~~~~~~~~~~~~~i~~~~~~g--~pvlgiC~ 80 (194)
T cd01750 14 DLDPLAREPGVDVRYVEVPEG-------LGDADLIILPGSKD-TIQ---DLAWLRKRGLAEAIKNYARAG--GPVLGICG 80 (194)
T ss_pred HHHHHHhcCCceEEEEeCCCC-------CCCCCEEEECCCcc-hHH---HHHHHHHcCHHHHHHHHHHCC--CcEEEECH
Confidence 567888899999998876543 56889999999973 111 1111 123567778877754 99999999
Q ss_pred hhhHHHHH
Q psy12875 126 GFELILQV 133 (308)
Q Consensus 126 G~Qll~~~ 133 (308)
|||+|+..
T Consensus 81 G~qlL~~~ 88 (194)
T cd01750 81 GYQMLGKY 88 (194)
T ss_pred HHHHhhhh
Confidence 99999988
No 101
>CHL00101 trpG anthranilate synthase component 2
Probab=98.65 E-value=3e-08 Score=85.63 Aligned_cols=48 Identities=23% Similarity=0.322 Sum_probs=38.9
Q ss_pred cceeeecCCCCcch----hhhHhhhcCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875 151 LNLKFLPGAKRSSL----FSQINEEGVTFPVLGVCLGFELILQVSNNDTDFR 198 (308)
Q Consensus 151 ~~l~~~pg~~~~~~----~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~ 198 (308)
..+.++|||+.+.. ...++....++|+||||+|||+|+.++||+|.+.
T Consensus 45 dgiiisgGpg~~~~~~~~~~i~~~~~~~~PiLGIClG~Qlla~~~Gg~V~~~ 96 (190)
T CHL00101 45 RHIIISPGPGHPRDSGISLDVISSYAPYIPILGVCLGHQSIGYLFGGKIIKA 96 (190)
T ss_pred CEEEECCCCCChHHCcchHHHHHHhcCCCcEEEEchhHHHHHHHhCCEEEEC
Confidence 35889999998753 2233445678999999999999999999999875
No 102
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=98.65 E-value=2.9e-08 Score=85.98 Aligned_cols=47 Identities=30% Similarity=0.456 Sum_probs=39.5
Q ss_pred ceeeecCCCCcc----hhhhHhhhcCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875 152 NLKFLPGAKRSS----LFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFR 198 (308)
Q Consensus 152 ~l~~~pg~~~~~----~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~ 198 (308)
.++++|||..|. ....++....++|+||||+|||+|+.++||+|.+.
T Consensus 46 ~iilsgGp~~~~~~~~~~~~i~~~~~~~PiLGIClG~Qlia~a~Gg~v~~~ 96 (193)
T PRK08857 46 HLVISPGPCTPNEAGISLQAIEHFAGKLPILGVCLGHQAIAQVFGGQVVRA 96 (193)
T ss_pred EEEEeCCCCChHHCcchHHHHHHhcCCCCEEEEcHHHHHHHHHhCCEEEeC
Confidence 589999998875 24455556779999999999999999999999775
No 103
>PLN02335 anthranilate synthase
Probab=98.63 E-value=3.3e-08 Score=87.48 Aligned_cols=47 Identities=21% Similarity=0.377 Sum_probs=39.2
Q ss_pred ceeeecCCCCcch----hhhHhhhcCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875 152 NLKFLPGAKRSSL----FSQINEEGVTFPVLGVCLGFELILQVSNNDTDFR 198 (308)
Q Consensus 152 ~l~~~pg~~~~~~----~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~ 198 (308)
.+.++|||+.|.. ...+++...++|+||||||||+|+.++||++.+.
T Consensus 65 ~iVisgGPg~p~d~~~~~~~~~~~~~~~PiLGIClG~QlLa~alGg~v~~~ 115 (222)
T PLN02335 65 GVLISPGPGTPQDSGISLQTVLELGPLVPLFGVCMGLQCIGEAFGGKIVRS 115 (222)
T ss_pred EEEEcCCCCChhhccchHHHHHHhCCCCCEEEecHHHHHHHHHhCCEEEeC
Confidence 5999999999863 3344455678999999999999999999998765
No 104
>PHA03366 FGAM-synthase; Provisional
Probab=98.63 E-value=5.5e-07 Score=97.13 Aligned_cols=101 Identities=16% Similarity=0.183 Sum_probs=67.4
Q ss_pred CCCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCC
Q psy12875 16 TDTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPN 95 (308)
Q Consensus 16 ~~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~ 95 (308)
..||.++|+..+..+ . +.....+++++|+.+..+...+-.. -+ .+++++||++|||.+..+...
T Consensus 1026 ~~~prVaIl~~pG~N-------~-------~~e~~~Af~~aGf~~~~v~~~dL~~-~~-~l~~f~glv~~GGFS~gD~l~ 1089 (1304)
T PHA03366 1026 DKRHRVAVLLLPGCP-------G-------PHALLAAFTNAGFDPYPVSIEELKD-GT-FLDEFSGLVIGGSSGAEDSYT 1089 (1304)
T ss_pred CCCCeEEEEECCCCC-------C-------HHHHHHHHHHcCCceEEEEeecCCC-CC-ccccceEEEEcCCCCCccccc
Confidence 458999999887654 1 2344678889999998888643111 01 278999999999986433320
Q ss_pred chhHHH------HHHHHHHHHHHHcCCCccEEEech-hhhHHHHH
Q psy12875 96 GYADAG------RQILHLVDKINEEGVTFPVLGVCL-GFELILQV 133 (308)
Q Consensus 96 ~~~~~~------~~~~e~~~~~~~~g~~~PvlGIC~-G~Qll~~~ 133 (308)
.-..+. ..+.+.++++.++ .+.++||||. |+|+|+..
T Consensus 1090 ~~~~~a~~il~n~~~~~~~~~f~~r-~dt~~LGiCN~G~Q~L~~l 1133 (1304)
T PHA03366 1090 GARAAVAALLSNPAVRDALLRFLNR-PDTFSLGCGELGCQILFAL 1133 (1304)
T ss_pred HHHHHHHHhhhchHHHHHHHHHHhC-CCCeEEEeCcHHHHHHHHc
Confidence 011111 2445566666653 4689999999 99999976
No 105
>PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing)
Probab=98.63 E-value=2.8e-08 Score=94.62 Aligned_cols=81 Identities=19% Similarity=0.217 Sum_probs=52.9
Q ss_pred ccEEEechhhhHHH-HH--hcCCccc--ccccccc---c-cccceeeecCCCCcch----hhhHhhhcCCCCeeeeehhH
Q psy12875 118 FPVLGVCLGFELIL-QV--SNNDTDF--RKSCKVQ---Q-VNLNLKFLPGAKRSSL----FSQINEEGVTFPVLGVCLGF 184 (308)
Q Consensus 118 ~PvlGIC~G~Qll~-~~--~~gg~~~--~~~~~~~---~-~~~~l~~~pg~~~~~~----~~~i~~~~~~~PilGiClG~ 184 (308)
.-|.-+..|..... .. ..|-... ....+.+ . ...++.+++||++|.. .+.+++...++|+|||||||
T Consensus 241 ~~IvviD~G~K~nIlr~L~~~G~~v~VvP~~~~~~ei~~~~pDGIiLSnGPGDP~~~~~~ie~ik~l~~~iPIlGICLGh 320 (415)
T PLN02771 241 YHVIAYDFGIKHNILRRLASYGCKITVVPSTWPASEALKMKPDGVLFSNGPGDPSAVPYAVETVKELLGKVPVFGICMGH 320 (415)
T ss_pred CEEEEECCChHHHHHHHHHHcCCeEEEECCCCCHHHHhhcCCCEEEEcCCCCChhHhhHHHHHHHHHHhCCCEEEEcHHH
Confidence 35888888885322 21 1343321 1111111 1 1247999999999874 33444444689999999999
Q ss_pred HHHHHHhCCccccc
Q psy12875 185 ELILQVSNNDTDFR 198 (308)
Q Consensus 185 Qll~~~~G~~v~~~ 198 (308)
|+|+.++||++.+.
T Consensus 321 QlLa~AlGGkv~K~ 334 (415)
T PLN02771 321 QLLGQALGGKTFKM 334 (415)
T ss_pred HHHHHhcCCeEEEC
Confidence 99999999998775
No 106
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=98.62 E-value=3.6e-08 Score=85.13 Aligned_cols=48 Identities=19% Similarity=0.328 Sum_probs=38.5
Q ss_pred cceeeecCCCCcch----hhhHhhhcCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875 151 LNLKFLPGAKRSSL----FSQINEEGVTFPVLGVCLGFELILQVSNNDTDFR 198 (308)
Q Consensus 151 ~~l~~~pg~~~~~~----~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~ 198 (308)
..+.++|||+.|.. ...++....++|+||||||||+|+.++||+|.+.
T Consensus 45 d~iIi~gGp~~~~~~~~~~~~i~~~~~~~PiLGIClG~Qlla~~~Gg~V~~~ 96 (190)
T PRK06895 45 SHILISPGPDVPRAYPQLFAMLERYHQHKSILGVCLGHQTLCEFFGGELYNL 96 (190)
T ss_pred CEEEECCCCCChHHhhHHHHHHHHhcCCCCEEEEcHHHHHHHHHhCCeEeec
Confidence 35888999996543 3455555668999999999999999999999764
No 107
>PRK05670 anthranilate synthase component II; Provisional
Probab=98.60 E-value=4.2e-08 Score=84.64 Aligned_cols=48 Identities=25% Similarity=0.355 Sum_probs=39.3
Q ss_pred cceeeecCCCCcch----hhhHhhhcCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875 151 LNLKFLPGAKRSSL----FSQINEEGVTFPVLGVCLGFELILQVSNNDTDFR 198 (308)
Q Consensus 151 ~~l~~~pg~~~~~~----~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~ 198 (308)
..+.+++||+++.. ...++....++|+||||+|||+|+.++||+|.+.
T Consensus 45 dglIlsgGpg~~~d~~~~~~~l~~~~~~~PvLGIClG~Qlla~alGg~v~~~ 96 (189)
T PRK05670 45 DAIVLSPGPGTPAEAGISLELIREFAGKVPILGVCLGHQAIGEAFGGKVVRA 96 (189)
T ss_pred CEEEEcCCCCChHHcchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCEEEec
Confidence 35889999988752 3455555668999999999999999999999775
No 108
>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase. This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model.
Probab=98.51 E-value=1.9e-06 Score=92.70 Aligned_cols=100 Identities=16% Similarity=0.188 Sum_probs=66.8
Q ss_pred CCCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCC
Q psy12875 16 TDTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPN 95 (308)
Q Consensus 16 ~~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~ 95 (308)
..||.|+|+..+..+ .+.....+++++|+.+..+...+-... ..+++++||+++||.+.-++.
T Consensus 927 ~~~p~VaIl~~pG~N--------------~~~e~~~Af~~aGf~~~~v~~~dl~~~--~~l~~f~glv~~Ggfsy~D~l- 989 (1202)
T TIGR01739 927 DPRHQVAVLLLPGQS--------------VPHGLLAALTNAGFDPRIVSITELKKT--DFLDTFSGLIIGGASGTLDSE- 989 (1202)
T ss_pred CCCCeEEEEeCCCCC--------------CHHHHHHHHHHcCCceEEEEeccCCCC--CchhheEEEEEcCcCCCCccc-
Confidence 347999999887654 123446788999999988886541110 135789999999997543331
Q ss_pred chhH-HH------HHHHHHHHHHHHcCCCccEEEech-hhhHHHHH
Q psy12875 96 GYAD-AG------RQILHLVDKINEEGVTFPVLGVCL-GFELILQV 133 (308)
Q Consensus 96 ~~~~-~~------~~~~e~~~~~~~~g~~~PvlGIC~-G~Qll~~~ 133 (308)
.-.+ +. ..+.+.+++++++ .+.++||||. |+|+|...
T Consensus 990 gsg~~~a~~il~n~~~~~~~~~f~~r-~dtf~LGiCN~G~Q~L~~l 1034 (1202)
T TIGR01739 990 VGARALAAALLRNQAFLRDLLTFLNR-PDTFSLGFGELGCQLLLAL 1034 (1202)
T ss_pred hHHHHHHHHhhcchHHHHHHHHHHhC-CCceEEEeCcHHHHHHHHc
Confidence 1111 11 2455556666653 4699999999 99999976
No 109
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=98.45 E-value=1.8e-07 Score=82.39 Aligned_cols=48 Identities=23% Similarity=0.335 Sum_probs=38.3
Q ss_pred cceeeecCCCCcch----hhhHhhh-cCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875 151 LNLKFLPGAKRSSL----FSQINEE-GVTFPVLGVCLGFELILQVSNNDTDFR 198 (308)
Q Consensus 151 ~~l~~~pg~~~~~~----~~~i~~~-~~~~PilGiClG~Qll~~~~G~~v~~~ 198 (308)
.++.+++||+.|.. ...+++. ..++|+||||+|||+|+.++||+|.+.
T Consensus 48 dgliisGGp~~~~~~~~~~~~i~~~~~~~~PiLGIC~G~Qlla~a~GG~v~~~ 100 (214)
T PRK07765 48 DGVLLSPGPGTPERAGASIDMVRACAAAGTPLLGVCLGHQAIGVAFGATVDRA 100 (214)
T ss_pred CEEEECCCCCChhhcchHHHHHHHHHhCCCCEEEEccCHHHHHHHhCCEEeeC
Confidence 35888899987752 3455554 468999999999999999999999764
No 110
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=98.40 E-value=2.3e-07 Score=91.96 Aligned_cols=47 Identities=21% Similarity=0.376 Sum_probs=38.6
Q ss_pred ceeeecCCCCcchh----hhHhhhcCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875 152 NLKFLPGAKRSSLF----SQINEEGVTFPVLGVCLGFELILQVSNNDTDFR 198 (308)
Q Consensus 152 ~l~~~pg~~~~~~~----~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~ 198 (308)
.++++|||++|... ..++....++|+||||||||+|+.++||+|.+.
T Consensus 51 ~IIlSpGPg~p~d~~~~~~i~~~~~~~iPILGIClG~QlLa~a~GG~V~~~ 101 (531)
T PRK09522 51 VLMLSPGPGVPSEAGCMPELLTRLRGKLPIIGICLGHQAIVEAYGGYVGQA 101 (531)
T ss_pred EEEEcCCCCChhhCCCCHHHHHHHhcCCCEEEEcHHHHHHHHhcCCEEEeC
Confidence 59999999998742 233334568999999999999999999999764
No 111
>PRK05637 anthranilate synthase component II; Provisional
Probab=98.39 E-value=2.9e-07 Score=80.68 Aligned_cols=47 Identities=23% Similarity=0.422 Sum_probs=37.8
Q ss_pred cceeeecCCCCcchh----hhHhhhcCCCCeeeeehhHHHHHHHhCCcccc
Q psy12875 151 LNLKFLPGAKRSSLF----SQINEEGVTFPVLGVCLGFELILQVSNNDTDF 197 (308)
Q Consensus 151 ~~l~~~pg~~~~~~~----~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~ 197 (308)
..+.++|||+.|... ..++....++|+||||||||+|+.++||+|.+
T Consensus 46 ~~iIlsgGPg~~~d~~~~~~li~~~~~~~PiLGIClG~Qlla~alGG~V~~ 96 (208)
T PRK05637 46 DLICLSPGPGHPRDAGNMMALIDRTLGQIPLLGICLGFQALLEHHGGKVEP 96 (208)
T ss_pred CEEEEeCCCCCHHHhhHHHHHHHHHhCCCCEEEEcHHHHHHHHHcCCeecc
Confidence 359999999998632 23433345799999999999999999999975
No 112
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit. This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.
Probab=98.37 E-value=3.5e-07 Score=86.21 Aligned_cols=48 Identities=19% Similarity=0.294 Sum_probs=39.4
Q ss_pred cceeeecCCCCcch----hhhHhhhcCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875 151 LNLKFLPGAKRSSL----FSQINEEGVTFPVLGVCLGFELILQVSNNDTDFR 198 (308)
Q Consensus 151 ~~l~~~pg~~~~~~----~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~ 198 (308)
.++.+++||++|.. ...+++...++|+||||+|||+|+.++||++.+.
T Consensus 216 DGIiLSgGPgdp~~~~~~i~~i~~~~~~~PILGIClG~QlLa~a~Gg~v~kl 267 (358)
T TIGR01368 216 DGIFLSNGPGDPAAVEPAIETIRKLLEKIPIFGICLGHQLLALAFGAKTYKM 267 (358)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHHcCCCEEEECHHHHHHHHHhCCceecc
Confidence 57999999999863 3345554448999999999999999999998765
No 113
>PLN02889 oxo-acid-lyase/anthranilate synthase
Probab=98.37 E-value=3.8e-07 Score=94.55 Aligned_cols=47 Identities=26% Similarity=0.396 Sum_probs=37.7
Q ss_pred cceeeecCCCCcch-------hhhHhhhcCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875 151 LNLKFLPGAKRSSL-------FSQINEEGVTFPVLGVCLGFELILQVSNNDTDFR 198 (308)
Q Consensus 151 ~~l~~~pg~~~~~~-------~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~ 198 (308)
..++++|||++|.. ...+.+. .++||||||||||+|++++||+|.+.
T Consensus 133 d~IVlSPGPG~P~~~~d~Gi~~~~i~~~-~~iPILGICLGhQ~i~~~~Gg~V~~~ 186 (918)
T PLN02889 133 DNIVISPGPGSPTCPADIGICLRLLLEC-RDIPILGVCLGHQALGYVHGARIVHA 186 (918)
T ss_pred CEEEECCCCCCccchHHHHHHHHHHHHh-CCCcEEEEcHHHHHHHHhcCceEEeC
Confidence 36999999999952 1222322 47999999999999999999999886
No 114
>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed
Probab=98.36 E-value=3.9e-07 Score=85.76 Aligned_cols=48 Identities=25% Similarity=0.445 Sum_probs=38.6
Q ss_pred cceeeecCCCCcch----hhhHhhhcCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875 151 LNLKFLPGAKRSSL----FSQINEEGVTFPVLGVCLGFELILQVSNNDTDFR 198 (308)
Q Consensus 151 ~~l~~~pg~~~~~~----~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~ 198 (308)
.++.+++||++|.. ...+++...++|+||||+|||+|+.++||++.+.
T Consensus 210 DGIiLsgGPgdp~~~~~~~~~i~~~~~~~PvlGIClG~QlLa~a~Gg~v~kl 261 (354)
T PRK12838 210 DGIVLSNGPGDPKELQPYLPEIKKLISSYPILGICLGHQLIALALGADTEKL 261 (354)
T ss_pred CEEEEcCCCCChHHhHHHHHHHHHHhcCCCEEEECHHHHHHHHHhCCEEecC
Confidence 46899999998763 3344544344999999999999999999999875
No 115
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=98.35 E-value=4.6e-07 Score=77.76 Aligned_cols=47 Identities=23% Similarity=0.331 Sum_probs=37.0
Q ss_pred ceeeecCCCCcch---hhhHh-hhcCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875 152 NLKFLPGAKRSSL---FSQIN-EEGVTFPVLGVCLGFELILQVSNNDTDFR 198 (308)
Q Consensus 152 ~l~~~pg~~~~~~---~~~i~-~~~~~~PilGiClG~Qll~~~~G~~v~~~ 198 (308)
.+.+++||+.+.. ...++ ....++|+||||+|||+|+.++||++.+.
T Consensus 45 gvil~gG~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Qlla~~~Gg~v~~~ 95 (184)
T cd01743 45 AIVISPGPGHPEDAGISLEIIRALAGKVPILGVCLGHQAIAEAFGGKVVRA 95 (184)
T ss_pred EEEECCCCCCcccchhHHHHHHHHhcCCCEEEECHhHHHHHHHhCCEEEeC
Confidence 5788899988652 22333 34568999999999999999999998764
No 116
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=98.31 E-value=3e-07 Score=79.15 Aligned_cols=48 Identities=19% Similarity=0.324 Sum_probs=38.4
Q ss_pred cceeeecCCCCcch----hhhHhhh-cCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875 151 LNLKFLPGAKRSSL----FSQINEE-GVTFPVLGVCLGFELILQVSNNDTDFR 198 (308)
Q Consensus 151 ~~l~~~pg~~~~~~----~~~i~~~-~~~~PilGiClG~Qll~~~~G~~v~~~ 198 (308)
..+.+++|+..+.. ...+++. ..++|+||||+|||+|+.++|++|.+.
T Consensus 44 d~iii~Gg~~~~~d~~~~~~~i~~~~~~~~PilGIC~G~Q~la~~~G~~v~~~ 96 (192)
T PF00117_consen 44 DGIIISGGPGSPYDIEGLIELIREARERKIPILGICLGHQILAHALGGKVVPS 96 (192)
T ss_dssp SEEEEECESSSTTSHHHHHHHHHHHHHTTSEEEEETHHHHHHHHHTTHEEEEE
T ss_pred CEEEECCcCCccccccccccccccccccceEEEEEeehhhhhHHhcCCccccc
Confidence 46899999998773 2334443 459999999999999999999998764
No 117
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=98.28 E-value=7.3e-07 Score=84.60 Aligned_cols=48 Identities=15% Similarity=0.308 Sum_probs=38.5
Q ss_pred cceeeecCCCCcch----hhhHhhh-cCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875 151 LNLKFLPGAKRSSL----FSQINEE-GVTFPVLGVCLGFELILQVSNNDTDFR 198 (308)
Q Consensus 151 ~~l~~~pg~~~~~~----~~~i~~~-~~~~PilGiClG~Qll~~~~G~~v~~~ 198 (308)
.++.+++||++|.. .+.+++. ..++|+||||||||+|+.++||++.+.
T Consensus 235 dgIilSgGPg~p~~~~~~i~~i~~~~~~~~PilGIClGhQlLa~a~Gg~v~k~ 287 (382)
T CHL00197 235 DGILLSNGPGDPSAIHYGIKTVKKLLKYNIPIFGICMGHQILSLALEAKTFKL 287 (382)
T ss_pred CEEEEcCCCCChhHHHHHHHHHHHHHhCCCCEEEEcHHHHHHHHHhCCEEecc
Confidence 46999999999863 2334443 358999999999999999999998764
No 118
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=98.27 E-value=1.7e-06 Score=84.51 Aligned_cols=73 Identities=16% Similarity=0.327 Sum_probs=45.8
Q ss_pred HHHHHHHcCC-eEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhh
Q psy12875 49 YVKNIEAAGA-RVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGF 127 (308)
Q Consensus 49 ~~~~l~~aG~-~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~ 127 (308)
.+++++.+|. .+.+++... .+ .+.++|+||+|||. .... ......+.+.++++ ++||||||.||
T Consensus 11 v~~al~~lg~~~~~vv~~~~-~~----~l~~~D~lILPGG~-~~~~----~~l~~~l~~~i~~~-----g~pvlGICgG~ 75 (476)
T PRK06278 11 SLPCFENFGNLPTKIIDENN-IK----EIKDLDGLIIPGGS-LVES----GSLTDELKKEILNF-----DGYIIGICSGF 75 (476)
T ss_pred HHHHHHHhcCCCcEEEEeCC-hH----HhccCCEEEECCCc-hhhc----chHHHHHHHHHHHc-----CCeEEEEcHHH
Confidence 3456777776 555554332 22 46789999999974 1111 11123444444433 38999999999
Q ss_pred hHHHHHhcC
Q psy12875 128 ELILQVSNN 136 (308)
Q Consensus 128 Qll~~~~~g 136 (308)
|+|+..+..
T Consensus 76 QmLg~~~~e 84 (476)
T PRK06278 76 QILSEKIDI 84 (476)
T ss_pred Hhccccccc
Confidence 999988433
No 119
>cd03131 GATase1_HTS Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). HTS, the first enzyme in methionine biosynthesis in Escherichia coli, transfers a succinyl group from succinyl-CoA to homoserine forming succinyl homoserine. It has been suggested that the succinyl group of succinyl-CoA is initially transferred to an enzyme nucleophile before subsequent transfer to homoserine. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with GATase1 domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. It has been proposed that this cys is in the active site of the molecule. However, as succinyl has been found bound to a conserved lysine residue, this conserved cys may play a role in dimer formation. HTS acti
Probab=98.27 E-value=1.4e-06 Score=73.98 Aligned_cols=58 Identities=14% Similarity=0.104 Sum_probs=42.2
Q ss_pred cCCCCEEEEcCCCCCCCCC--CchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHHhcCCcc
Q psy12875 76 LTQINGVVIPGGGTGFDHP--NGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQVSNNDTD 139 (308)
Q Consensus 76 l~~~dGlilpGG~~~~~~~--~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~~~gg~~ 139 (308)
.+++||+|+||.+....+. -+|-+....+++++++ +.+|+|++|.|+|....+ ++|..
T Consensus 60 ~~~yDGlIITGApve~~~fe~v~Yw~El~~i~dwa~~-----~v~stl~iCWgaqaal~~-~yGi~ 119 (175)
T cd03131 60 DAKFDGLIVTGAPVEHLPFEQVDYWEELTEILDWAKT-----HVTSTLFSCWAAMAALYY-FYGIK 119 (175)
T ss_pred ccCCCEEEEeCCCcccCCccccchHHHHHHHHHHHHH-----hCcchHHHHHHHHHHHHH-HcCcc
Confidence 5789999999997533221 0233345567777763 458999999999999999 88864
No 120
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed
Probab=98.24 E-value=1e-06 Score=83.19 Aligned_cols=48 Identities=21% Similarity=0.328 Sum_probs=38.9
Q ss_pred cceeeecCCCCcch----hhhHhhh-cCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875 151 LNLKFLPGAKRSSL----FSQINEE-GVTFPVLGVCLGFELILQVSNNDTDFR 198 (308)
Q Consensus 151 ~~l~~~pg~~~~~~----~~~i~~~-~~~~PilGiClG~Qll~~~~G~~v~~~ 198 (308)
.++.+++||++|.. ...+++. ..++|+||||+|||+|+.++||++.+.
T Consensus 220 DGIvLSgGPgdp~~~~~~~~~i~~~~~~~~PilGIClG~QlLa~a~Gg~v~kl 272 (360)
T PRK12564 220 DGVFLSNGPGDPAALDYAIEMIRELLEKKIPIFGICLGHQLLALALGAKTYKM 272 (360)
T ss_pred CEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEECHHHHHHHHHhCCcEecc
Confidence 46899999998763 3345544 357999999999999999999998765
No 121
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=98.24 E-value=3.9e-06 Score=73.74 Aligned_cols=98 Identities=14% Similarity=0.175 Sum_probs=66.4
Q ss_pred CCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHc-CCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCC
Q psy12875 17 DTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAA-GARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPN 95 (308)
Q Consensus 17 ~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~a-G~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~ 95 (308)
.+|.|.+.+.-+.. .+.|+ .++.+++++. |+++..+.... ..+..+.+.++|+|++|||. ..
T Consensus 30 ~~~~i~~IptAs~~----------~~~~~-~~~~~a~~~l~G~~~~~~~~~~-~~~~~~~l~~ad~I~l~GG~--~~--- 92 (212)
T cd03146 30 ARPKVLFVPTASGD----------RDEYT-ARFYAAFESLRGVEVSHLHLFD-TEDPLDALLEADVIYVGGGN--TF--- 92 (212)
T ss_pred CCCeEEEECCCCCC----------HHHHH-HHHHHHHhhccCcEEEEEeccC-cccHHHHHhcCCEEEECCch--HH---
Confidence 45778877665432 23454 4788999999 99988776543 22334567899999999984 11
Q ss_pred chhHH-HH-HHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875 96 GYADA-GR-QILHLVDKINEEGVTFPVLGVCLGFELILQV 133 (308)
Q Consensus 96 ~~~~~-~~-~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~ 133 (308)
.+.+. .+ .+.+.+++++++| +|++|+|.|+|++...
T Consensus 93 ~~~~~l~~~~l~~~l~~~~~~g--~~i~G~SAGa~i~~~~ 130 (212)
T cd03146 93 NLLAQWREHGLDAILKAALERG--VVYIGWSAGSNCWFPS 130 (212)
T ss_pred HHHHHHHHcCHHHHHHHHHHCC--CEEEEECHhHHhhCCC
Confidence 12222 22 3456667777644 9999999999999974
No 122
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=98.23 E-value=1.1e-06 Score=87.46 Aligned_cols=48 Identities=25% Similarity=0.358 Sum_probs=39.7
Q ss_pred cceeeecCCCCcch----hhhHhhhcCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875 151 LNLKFLPGAKRSSL----FSQINEEGVTFPVLGVCLGFELILQVSNNDTDFR 198 (308)
Q Consensus 151 ~~l~~~pg~~~~~~----~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~ 198 (308)
..+.++|||+.|.. ...++....++|+||||+|||+|+.++||+|.+.
T Consensus 46 d~vIlsgGP~~p~~~~~~~~li~~~~~~~PvLGIClG~QlLa~a~Gg~V~~~ 97 (534)
T PRK14607 46 SHIVISPGPGRPEEAGISVEVIRHFSGKVPILGVCLGHQAIGYAFGGKIVHA 97 (534)
T ss_pred CEEEECCCCCChhhCCccHHHHHHhhcCCCEEEEcHHHHHHHHHcCCeEecC
Confidence 35999999998762 3455555678999999999999999999999775
No 123
>PRK05665 amidotransferase; Provisional
Probab=98.22 E-value=1.5e-06 Score=77.78 Aligned_cols=48 Identities=17% Similarity=0.149 Sum_probs=34.3
Q ss_pred cceeeecCCCCcc--------hhhhHhhh-cCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875 151 LNLKFLPGAKRSS--------LFSQINEE-GVTFPVLGVCLGFELILQVSNNDTDFR 198 (308)
Q Consensus 151 ~~l~~~pg~~~~~--------~~~~i~~~-~~~~PilGiClG~Qll~~~~G~~v~~~ 198 (308)
.++.+.-||.... +...|++. ..++|+||||||||+|++++||+|.+.
T Consensus 59 dgiiitGs~~~v~~~~pwi~~l~~~i~~~~~~~~PilGIC~GhQlla~AlGG~V~~~ 115 (240)
T PRK05665 59 DAYLVTGSKADSFGTDPWIQTLKTYLLKLYERGDKLLGVCFGHQLLALLLGGKAERA 115 (240)
T ss_pred CEEEECCCCCCccccchHHHHHHHHHHHHHhcCCCEEEEeHHHHHHHHHhCCEEEeC
Confidence 3466666655432 12233332 568999999999999999999999875
No 124
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=98.22 E-value=5e-06 Score=81.20 Aligned_cols=75 Identities=20% Similarity=0.296 Sum_probs=54.2
Q ss_pred HHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCch-hHHH--HHHHHHHHHHHHcCCCccEEEe
Q psy12875 47 ASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGY-ADAG--RQILHLVDKINEEGVTFPVLGV 123 (308)
Q Consensus 47 ~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~-~~~~--~~~~e~~~~~~~~g~~~PvlGI 123 (308)
....+.|++.|++++.+....+. .+.++|+|++|||... .+ .+.. +.+.+.++++.++| +||+||
T Consensus 261 ~e~~~~L~~~g~~~~~~~~~~~~-----~l~~~D~lilpGG~~~-----~~~~~l~~~~~~~~~i~~~~~~g--~~i~ai 328 (451)
T PRK01077 261 PENLELLRAAGAELVFFSPLADE-----ALPDCDGLYLGGGYPE-----LFAAELAANTSMRASIRAAAAAG--KPIYAE 328 (451)
T ss_pred HHHHHHHHHCCCEEEEeCCcCCC-----CCCCCCEEEeCCCchh-----hHHHHHhhCchhHHHHHHHHHcC--CCEEEE
Confidence 35568889999998887543222 3568999999999521 12 1121 24677788888855 899999
Q ss_pred chhhhHHHHH
Q psy12875 124 CLGFELILQV 133 (308)
Q Consensus 124 C~G~Qll~~~ 133 (308)
|.|+|+|...
T Consensus 329 CgG~~~L~~~ 338 (451)
T PRK01077 329 CGGLMYLGES 338 (451)
T ss_pred cHHHHHHHhh
Confidence 9999999988
No 125
>PRK09065 glutamine amidotransferase; Provisional
Probab=98.19 E-value=2e-06 Score=76.95 Aligned_cols=48 Identities=13% Similarity=0.341 Sum_probs=35.3
Q ss_pred cceeeecCCCCcc--------hhhhHhh-hcCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875 151 LNLKFLPGAKRSS--------LFSQINE-EGVTFPVLGVCLGFELILQVSNNDTDFR 198 (308)
Q Consensus 151 ~~l~~~pg~~~~~--------~~~~i~~-~~~~~PilGiClG~Qll~~~~G~~v~~~ 198 (308)
..+.++.||.... ....++. ...++|+||||+|||+|+.++||+|.+.
T Consensus 56 dgvvi~Gg~~~~~d~~~w~~~~~~~i~~~~~~~~PvlGIC~G~Qlla~alGg~V~~~ 112 (237)
T PRK09065 56 AGVIITGSWAMVTDRLDWSERTADWLRQAAAAGMPLLGICYGHQLLAHALGGEVGYN 112 (237)
T ss_pred CEEEEeCCCcccCCCchhHHHHHHHHHHHHHCCCCEEEEChhHHHHHHHcCCccccC
Confidence 3577777776532 1233443 2468999999999999999999999774
No 126
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=98.16 E-value=6.2e-06 Score=80.48 Aligned_cols=75 Identities=21% Similarity=0.384 Sum_probs=55.0
Q ss_pred HHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhH-H--HHHHHHHHHHHHHcCCCccEEEe
Q psy12875 47 ASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYAD-A--GRQILHLVDKINEEGVTFPVLGV 123 (308)
Q Consensus 47 ~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~-~--~~~~~e~~~~~~~~g~~~PvlGI 123 (308)
+.-.+.|++.|++++.+....+. .+.++|+|+||||..- .+.. . .+.+.+.++++.++| .||+|+
T Consensus 260 ~~~~~~L~~~g~~~~~~~~~~d~-----~l~~~d~l~ipGG~~~-----~~~~~l~~~~~~~~~i~~~~~~G--~pv~g~ 327 (449)
T TIGR00379 260 QDNLDALTHNAAELVPFSPLEDT-----ELPDVDAVYIGGGFPE-----LFAEELSQNQALRDSIKTFIHQG--LPIYGE 327 (449)
T ss_pred HHHHHHHHHCCCEEEEECCccCC-----CCCCCCEEEeCCcHHH-----HHHHHHHhhhHHHHHHHHHHHcC--CCEEEE
Confidence 45578899999999888653322 2558999999999621 1222 2 124667788888855 999999
Q ss_pred chhhhHHHHH
Q psy12875 124 CLGFELILQV 133 (308)
Q Consensus 124 C~G~Qll~~~ 133 (308)
|-|||+|...
T Consensus 328 CgG~~~L~~~ 337 (449)
T TIGR00379 328 CGGLMYLSQS 337 (449)
T ss_pred cHHHHHHHhh
Confidence 9999999988
No 127
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=98.16 E-value=2.2e-06 Score=73.26 Aligned_cols=48 Identities=21% Similarity=0.405 Sum_probs=37.0
Q ss_pred cceeeecCCCCcch----hhhHhhh-cCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875 151 LNLKFLPGAKRSSL----FSQINEE-GVTFPVLGVCLGFELILQVSNNDTDFR 198 (308)
Q Consensus 151 ~~l~~~pg~~~~~~----~~~i~~~-~~~~PilGiClG~Qll~~~~G~~v~~~ 198 (308)
..+.+++||+.+.. ...+++. ..++|+||||+|||+|+.++||++...
T Consensus 41 dgiil~GG~~~~~~~~~~~~~~~~~~~~~~PvlGIC~G~Q~l~~~~Gg~v~~~ 93 (178)
T cd01744 41 DGIFLSNGPGDPALLDEAIKTVRKLLGKKIPIFGICLGHQLLALALGAKTYKM 93 (178)
T ss_pred CEEEECCCCCChhHhHHHHHHHHHHHhCCCCEEEECHHHHHHHHHcCCceecC
Confidence 35888889887653 3344443 457999999999999999999998664
No 128
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=98.08 E-value=2.8e-06 Score=86.82 Aligned_cols=48 Identities=25% Similarity=0.411 Sum_probs=39.1
Q ss_pred cceeeecCCCCcch---hhhHhh-hcCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875 151 LNLKFLPGAKRSSL---FSQINE-EGVTFPVLGVCLGFELILQVSNNDTDFR 198 (308)
Q Consensus 151 ~~l~~~pg~~~~~~---~~~i~~-~~~~~PilGiClG~Qll~~~~G~~v~~~ 198 (308)
..++++|||+.+.. ...+++ ...++|+||||+|||+|+.++||+|.+.
T Consensus 561 DgLILsgGPGsp~d~~~~~~I~~~~~~~iPvLGICLG~QlLa~a~GG~V~~~ 612 (717)
T TIGR01815 561 DLVVLSPGPGRPADFDVAGTIDAALARGLPVFGVCLGLQGMVEAFGGALDVL 612 (717)
T ss_pred CEEEEcCCCCCchhcccHHHHHHHHHCCCCEEEECHHHHHHhhhhCCEEEEC
Confidence 46899999999863 334444 3568999999999999999999998774
No 129
>PF04204 HTS: Homoserine O-succinyltransferase ; InterPro: IPR005697 This family of enzymes, homoserine O-succinyltransferase, catalyses the first step in the biosynthesis of methionine: Succinyl-CoA + L-homoserine = CoA + O-succinyl-L-homoserine This enzyme is consequently essential for the survival of bacteria, plants and fungi. Since they are not found in humans, they make a promising new target for antimicrobial drug development. Homoserine O-succinyltransferase (HST) is a representative from this class and has recently had the key amino acids involved in substrate specificity and catalysis elucidated [].; GO: 0016746 transferase activity, transferring acyl groups, 0019281 L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine, 0005737 cytoplasm; PDB: 2H2W_A 2GHR_A 2VDJ_A.
Probab=98.08 E-value=1.4e-05 Score=73.07 Aligned_cols=140 Identities=20% Similarity=0.210 Sum_probs=72.8
Q ss_pred CCCCEEEEcCCCCCCCCC--CchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHHhcCCcccccccccccccccee
Q psy12875 77 TQINGVVIPGGGTGFDHP--NGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLK 154 (308)
Q Consensus 77 ~~~dGlilpGG~~~~~~~--~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~ 154 (308)
+.+||+|+||-+...-+- -+|-+....++++.++ +-++.+.||.|.|.-.....|=....
T Consensus 97 ~~~DglIITGAPvE~l~Fe~V~YW~El~~i~dwa~~-----~v~stl~iCWgAqAaLy~~yGI~K~~------------- 158 (298)
T PF04204_consen 97 RKFDGLIITGAPVEQLPFEEVDYWDELTEIFDWAKT-----HVTSTLFICWGAQAALYHFYGIPKYP------------- 158 (298)
T ss_dssp S-EEEEEE---TTTTS-GGGSTTHHHHHHHHHHHHH-----HEEEEEEETHHHHHHHHHHH----EE-------------
T ss_pred CCCCEEEEeCCCcCCCCcccCCcHHHHHHHHHHHHH-----cCCcchhhhHHHHHHHHHHcCCCccc-------------
Confidence 479999999987432210 0233334466666654 34899999999998554425543211
Q ss_pred eecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCcccceeeecccccCCCCCCcCccCCChhHHHhhc
Q psy12875 155 FLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFY 234 (308)
Q Consensus 155 ~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 234 (308)
...+++||= + +.+. ...++|++++++.+.+
T Consensus 159 ------------------l~~KlfGVf------------~-------------~~~~----~~~~pLl~Gfdd~f~~--- 188 (298)
T PF04204_consen 159 ------------------LPEKLFGVF------------E-------------HRVL----DPDHPLLRGFDDTFFA--- 188 (298)
T ss_dssp ------------------EEEEEEEEE------------E-------------EEES-----SS-GGGTT--SEEEE---
T ss_pred ------------------CCCcceece------------e-------------eecc----CCCChhhcCCCccccC---
Confidence 012344542 1 1101 2478999999876532
Q ss_pred cCCceeeccce--eeeeccccccCCCCCeEEEEEecCCCceEEEEEEecCCCEEEEeecCCccCc
Q psy12875 235 QKPLTHNNHIW--CITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNAY 297 (308)
Q Consensus 235 ~~~~v~~~H~~--~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~~~p~~GvQFHPE~~~~ 297 (308)
=||- .++.+.+ ...++++|+|.|++.+ +..+..++...+=+|.|||....
T Consensus 189 -------PhSR~t~i~~~~i---~~~~~L~vLa~s~~~G---~~l~~~~d~r~vfi~GH~EYd~~ 240 (298)
T PF04204_consen 189 -------PHSRYTEIDRDDI---KKAPGLEVLAESEEAG---VFLVASKDGRQVFITGHPEYDAD 240 (298)
T ss_dssp -------EEEEEEE--HHHH---CT-TTEEEEEEETTTE---EEEEEECCCTEEEE-S-TT--TT
T ss_pred -------CcccccCCCHHHH---hcCCCcEEEeccCCcc---eEEEEcCCCCEEEEeCCCccChh
Confidence 3332 2333332 1368999999998877 66777777777789999999854
No 130
>PRK00784 cobyric acid synthase; Provisional
Probab=98.08 E-value=5.5e-06 Score=81.70 Aligned_cols=72 Identities=22% Similarity=0.322 Sum_probs=51.4
Q ss_pred HHHHHHH-cCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHH--HHHHHHHHHHHcCCCccEEEech
Q psy12875 49 YVKNIEA-AGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGR--QILHLVDKINEEGVTFPVLGVCL 125 (308)
Q Consensus 49 ~~~~l~~-aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~--~~~e~~~~~~~~g~~~PvlGIC~ 125 (308)
-.+.|++ +|++++.+.... .+..+|||+||||..... -.++.+ .+.+.++++.++| +||+|||.
T Consensus 267 nl~~l~~~~g~~v~~~s~~~-------~l~~~d~lilpGg~~~~~----~~~~~~~~~l~~~i~~~~~~g--~pilg~C~ 333 (488)
T PRK00784 267 DFDPLRAEPGVDVRYVRPGE-------PLPDADLVILPGSKNTIA----DLAWLRESGWDEAIRAHARRG--GPVLGICG 333 (488)
T ss_pred ChHHHhhcCCCeEEEECCcc-------ccccCCEEEECCccchHH----HHHHHHHcCHHHHHHHHHHcC--CeEEEECH
Confidence 3577776 899888775321 356899999999973211 112222 3667788888755 99999999
Q ss_pred hhhHHHHH
Q psy12875 126 GFELILQV 133 (308)
Q Consensus 126 G~Qll~~~ 133 (308)
|||+|+..
T Consensus 334 G~~~L~~~ 341 (488)
T PRK00784 334 GYQMLGRR 341 (488)
T ss_pred HHHHHhhh
Confidence 99999988
No 131
>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade. This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.
Probab=98.07 E-value=3.5e-06 Score=86.74 Aligned_cols=48 Identities=27% Similarity=0.388 Sum_probs=37.2
Q ss_pred cceeeecCCCCcch---hhhHhhh-----cCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875 151 LNLKFLPGAKRSSL---FSQINEE-----GVTFPVLGVCLGFELILQVSNNDTDFR 198 (308)
Q Consensus 151 ~~l~~~pg~~~~~~---~~~i~~~-----~~~~PilGiClG~Qll~~~~G~~v~~~ 198 (308)
..+.++|||++|.. ...+.+. ..++|+||||+|||+|+.++||+|.+.
T Consensus 55 D~VVIspGPG~p~~~~~~~i~~~i~~~~~~~~iPvLGIClG~QlLa~a~GG~v~~~ 110 (742)
T TIGR01823 55 DAIVVGPGPGNPNNAQDMGIISELWELANLDEVPVLGICLGFQSLCLAQGADISRL 110 (742)
T ss_pred CEEEECCCCCCccchhhhHHHHHHHHhcccCCCcEEEEchhhHHHHhhcCCEEEEC
Confidence 36999999999852 2222221 136999999999999999999999775
No 132
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=98.07 E-value=5.6e-06 Score=71.26 Aligned_cols=47 Identities=17% Similarity=0.295 Sum_probs=34.2
Q ss_pred ceeeecCCCCcc---hhhhHhh-hcCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875 152 NLKFLPGAKRSS---LFSQINE-EGVTFPVLGVCLGFELILQVSNNDTDFR 198 (308)
Q Consensus 152 ~l~~~pg~~~~~---~~~~i~~-~~~~~PilGiClG~Qll~~~~G~~v~~~ 198 (308)
.+.+.+|+..+. ....++. ...++|+||||+|||+|+.++||++.+.
T Consensus 44 glii~Gg~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Qll~~~lgg~v~~~ 94 (188)
T TIGR00888 44 GIILSGGPSSVYAENAPRADEKIFELGVPVLGICYGMQLMAKQLGGEVGRA 94 (188)
T ss_pred EEEECCCCCCcCcCCchHHHHHHHhCCCCEEEECHHHHHHHHhcCceEecC
Confidence 466666665433 1234444 3568999999999999999999998764
No 133
>KOG1224|consensus
Probab=98.06 E-value=9.5e-06 Score=78.08 Aligned_cols=92 Identities=24% Similarity=0.417 Sum_probs=52.2
Q ss_pred CCCCccchHHHHHHHHHH-cCCeEEEEEcCC--ChhHHHHhc--CCCCEEEE-cCCCCCCCCCCchhHHHHHHHHHHHHH
Q psy12875 38 YPNYTSYIAASYVKNIEA-AGARVVPILIGQ--DREYYAEIL--TQINGVVI-PGGGTGFDHPNGYADAGRQILHLVDKI 111 (308)
Q Consensus 38 ~~~~~~~i~~~~~~~l~~-aG~~~~~i~~~~--~~~~~~~~l--~~~dGlil-pGG~~~~~~~~~~~~~~~~~~e~~~~~ 111 (308)
.+.+++|.. .++++|+. .|..++.+...+ ..+....+. -.+|+|++ ||.++..-+ .+... +.++..++
T Consensus 20 ID~YDSyTf-Niy~ll~~~~~vp~V~~vh~~~~~~d~~~~l~q~~~FDaIVVgPGPG~P~~a--~d~gI---~~rl~~~~ 93 (767)
T KOG1224|consen 20 IDNYDSYTF-NIYQLLSTINGVPPVVIVHDEWTWEDAYHYLYQDVAFDAIVVGPGPGSPMCA--ADIGI---CLRLLLEC 93 (767)
T ss_pred Eecccchhh-hHHHHHHHhcCCCcEEEEeccccCHHHHHHHhhccccceEEecCCCCCCCcH--HHHHH---HHHHHHhc
Confidence 345678865 55677765 454444443322 122222222 24899999 776643212 12111 22222332
Q ss_pred HHcCCCccEEEechhhhHHHHHhcCCccc
Q psy12875 112 NEEGVTFPVLGVCLGFELILQVSNNDTDF 140 (308)
Q Consensus 112 ~~~g~~~PvlGIC~G~Qll~~~~~gg~~~ 140 (308)
+++||||||+|||.|+.+ -|..+.
T Consensus 94 ----~~iPilGICLGfQal~l~-hGA~v~ 117 (767)
T KOG1224|consen 94 ----RDIPILGICLGFQALGLV-HGAHVV 117 (767)
T ss_pred ----CCCceeeeehhhHhHhhh-ccccee
Confidence 459999999999999988 887653
No 134
>KOG0026|consensus
Probab=98.05 E-value=2e-05 Score=65.14 Aligned_cols=88 Identities=24% Similarity=0.353 Sum_probs=55.5
Q ss_pred CCCccchHHHHHHHH-HHcCCeEEEEEcCCCh-hHHHHhcCCCCEEEE-cCCCCCCCCCCchhHHHHHHHHHHHHHHHcC
Q psy12875 39 PNYTSYIAASYVKNI-EAAGARVVPILIGQDR-EYYAEILTQINGVVI-PGGGTGFDHPNGYADAGRQILHLVDKINEEG 115 (308)
Q Consensus 39 ~~~~~~i~~~~~~~l-~~aG~~~~~i~~~~~~-~~~~~~l~~~dGlil-pGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g 115 (308)
+++++|. ....+.| -+.|+.+.+.+.++-. ++++ ..+.+++++ ||.+...+. .. -.+.++++-
T Consensus 25 DNYDSFT-~Nv~qYL~~e~g~~~~VyRNDeiTV~El~--~~NP~~LliSPGPG~P~Ds-----GI---s~~~i~~f~--- 90 (223)
T KOG0026|consen 25 DNYDSFT-YNLCQYLMGELGCHFEVYRNDELTVEELK--RKNPRGLLISPGPGTPQDS-----GI---SLQTVLELG--- 90 (223)
T ss_pred ecccchh-HHHHHHhhhccCccEEEEecCcccHHHHh--hcCCCeEEecCCCCCCccc-----cc---hHHHHHHhC---
Confidence 4556664 3555666 5678888887754321 2232 237889988 666543211 11 122233332
Q ss_pred CCccEEEechhhhHHHHHhcCCcccc
Q psy12875 116 VTFPVLGVCLGFELILQVSNNDTDFR 141 (308)
Q Consensus 116 ~~~PvlGIC~G~Qll~~~~~gg~~~~ 141 (308)
..+|+||||.|.|.|..+ +||++..
T Consensus 91 ~~iP~fGvCMGlQCi~e~-fGGkv~~ 115 (223)
T KOG0026|consen 91 PLVPLFGVCMGLQCIGEA-FGGKIVR 115 (223)
T ss_pred CCCceeeeehhhhhhhhh-hCcEEec
Confidence 469999999999999999 9998753
No 135
>PRK07567 glutamine amidotransferase; Provisional
Probab=98.02 E-value=5.2e-06 Score=74.47 Aligned_cols=26 Identities=27% Similarity=0.478 Sum_probs=24.3
Q ss_pred cCCCCeeeeehhHHHHHHHhCCcccc
Q psy12875 172 GVTFPVLGVCLGFELILQVSNNDTDF 197 (308)
Q Consensus 172 ~~~~PilGiClG~Qll~~~~G~~v~~ 197 (308)
..++|+||||+|||+|+.++||+|.+
T Consensus 91 ~~~~PvLGIC~G~Qlla~a~GG~V~~ 116 (242)
T PRK07567 91 ARDFPFLGACYGVGTLGHHQGGVVDR 116 (242)
T ss_pred hcCCCEEEEchhHHHHHHHcCCEEec
Confidence 56899999999999999999999976
No 136
>PRK13566 anthranilate synthase; Provisional
Probab=97.99 E-value=5.5e-06 Score=84.80 Aligned_cols=83 Identities=19% Similarity=0.199 Sum_probs=53.3
Q ss_pred CCccEEEechhhhH---HHHH--hcCCccc--ccccccc----ccccceeeecCCCCcch---hhhHhhh-cCCCCeeee
Q psy12875 116 VTFPVLGVCLGFEL---ILQV--SNNDTDF--RKSCKVQ----QVNLNLKFLPGAKRSSL---FSQINEE-GVTFPVLGV 180 (308)
Q Consensus 116 ~~~PvlGIC~G~Ql---l~~~--~~gg~~~--~~~~~~~----~~~~~l~~~pg~~~~~~---~~~i~~~-~~~~PilGi 180 (308)
.++-|+-|.+|.+. +... ..|.... +...+.+ .....+.++|||+.|.. ...++.. ..++|+|||
T Consensus 525 ~g~~IlvID~~dsf~~~l~~~Lr~~G~~v~vv~~~~~~~~~~~~~~DgVVLsgGpgsp~d~~~~~lI~~a~~~~iPILGI 604 (720)
T PRK13566 525 EGKRVLLVDHEDSFVHTLANYFRQTGAEVTTVRYGFAEEMLDRVNPDLVVLSPGPGRPSDFDCKATIDAALARNLPIFGV 604 (720)
T ss_pred CCCEEEEEECCCchHHHHHHHHHHCCCEEEEEECCCChhHhhhcCCCEEEECCCCCChhhCCcHHHHHHHHHCCCcEEEE
Confidence 45679999999543 3322 1232221 1110000 11235889999998763 3455543 568999999
Q ss_pred ehhHHHHHHHhCCccccc
Q psy12875 181 CLGFELILQVSNNDTDFR 198 (308)
Q Consensus 181 ClG~Qll~~~~G~~v~~~ 198 (308)
|+|||+|+.++||++.+.
T Consensus 605 ClG~QlLa~alGG~V~~~ 622 (720)
T PRK13566 605 CLGLQAIVEAFGGELGQL 622 (720)
T ss_pred ehhHHHHHHHcCCEEEEC
Confidence 999999999999999775
No 137
>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende
Probab=97.97 E-value=3.1e-05 Score=58.41 Aligned_cols=80 Identities=26% Similarity=0.412 Sum_probs=55.1
Q ss_pred HHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechh
Q psy12875 47 ASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLG 126 (308)
Q Consensus 47 ~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G 126 (308)
..+.+.++.++..+.+++.............++|++++|||...... ........++++++.++ ++|++|+|.|
T Consensus 15 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lii~g~~~~~~~----~~~~~~~~~~i~~~~~~--~~~i~~~c~g 88 (115)
T cd01653 15 ASPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPDD----LARDEALLALLREAAAA--GKPILGICLG 88 (115)
T ss_pred HHHHHHHHHCCCeEEEEcCCCCceeccCChhccCEEEECCCCCchhh----hccCHHHHHHHHHHHHc--CCEEEEECch
Confidence 46678999999999988866542111123568999999998732211 11124667777777774 4899999999
Q ss_pred hhHHHH
Q psy12875 127 FELILQ 132 (308)
Q Consensus 127 ~Qll~~ 132 (308)
+|++..
T Consensus 89 ~~~l~~ 94 (115)
T cd01653 89 AQLLVL 94 (115)
T ss_pred hHhHee
Confidence 999943
No 138
>KOG3179|consensus
Probab=97.91 E-value=6.5e-06 Score=70.22 Aligned_cols=29 Identities=21% Similarity=0.413 Sum_probs=25.8
Q ss_pred cCCCCeeeeehhHHHHHHHhCCcccccCC
Q psy12875 172 GVTFPVLGVCLGFELILQVSNNDTDFRKS 200 (308)
Q Consensus 172 ~~~~PilGiClG~Qll~~~~G~~v~~~~~ 200 (308)
.-++||+|||+|||+||++.|++|.+.+.
T Consensus 91 ~mkkkvlGICFGHQiiara~Gg~Vgra~K 119 (245)
T KOG3179|consen 91 FMKKKVLGICFGHQIIARAKGGKVGRAPK 119 (245)
T ss_pred hhccceEEEeccHHHHHHhhCCccccCCC
Confidence 34799999999999999999999988743
No 139
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=97.89 E-value=3.3e-05 Score=74.70 Aligned_cols=78 Identities=26% Similarity=0.364 Sum_probs=55.2
Q ss_pred cchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHH--HHHHHHHHHHcCCCccE
Q psy12875 43 SYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQ--ILHLVDKINEEGVTFPV 120 (308)
Q Consensus 43 ~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~--~~e~~~~~~~~g~~~Pv 120 (308)
+|..+.-.+.|+++ ++++.+..-.+. .+.++|+|++|||-.- .+.+..+. ..+.++++.++| .||
T Consensus 245 ~FyY~enl~~L~~~-aelv~fSPl~~~-----~lp~~D~l~lpGG~~e-----~~~~~L~~n~~~~~i~~~~~~G--~pi 311 (433)
T PRK13896 245 CFRYPATIERLRER-ADVVTFSPVAGD-----PLPDCDGVYLPGGYPE-----LHADALADSPALDELADRAADG--LPV 311 (433)
T ss_pred ceeCHHHHHHHHhc-CcEEEEcCCCCC-----CCCCCCEEEeCCCchh-----hHHHHHHhCCcHHHHHHHHHCC--CcE
Confidence 34445667899998 888877654332 2457999999999621 23333222 347778888855 999
Q ss_pred EEechhhhHHHHH
Q psy12875 121 LGVCLGFELILQV 133 (308)
Q Consensus 121 lGIC~G~Qll~~~ 133 (308)
+|+|-|+|+|...
T Consensus 312 ~aeCGG~q~L~~~ 324 (433)
T PRK13896 312 LGECGGLMALAES 324 (433)
T ss_pred EEEehHHHHhhcc
Confidence 9999999999987
No 140
>PLN02347 GMP synthetase
Probab=97.88 E-value=1.6e-05 Score=79.01 Aligned_cols=48 Identities=21% Similarity=0.312 Sum_probs=34.6
Q ss_pred cceeeecCCCCcch------hhhHhh-h-cCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875 151 LNLKFLPGAKRSSL------FSQINE-E-GVTFPVLGVCLGFELILQVSNNDTDFR 198 (308)
Q Consensus 151 ~~l~~~pg~~~~~~------~~~i~~-~-~~~~PilGiClG~Qll~~~~G~~v~~~ 198 (308)
.++.+++||..+.. ...+.+ . ..++|+||||||||+|+.++||+|.+.
T Consensus 55 dgIILsGGP~sv~~~~~p~~~~~i~~~~~~~~iPILGIClG~QlLa~alGG~V~~~ 110 (536)
T PLN02347 55 RVVILSGGPHSVHVEGAPTVPEGFFDYCRERGVPVLGICYGMQLIVQKLGGEVKPG 110 (536)
T ss_pred CEEEECCCCCcccccCCchhhHHHHHHHHhcCCcEEEECHHHHHHHHHcCCEEEec
Confidence 35788888865431 112222 1 358999999999999999999999764
No 141
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=97.88 E-value=5e-05 Score=66.93 Aligned_cols=84 Identities=17% Similarity=0.273 Sum_probs=56.3
Q ss_pred HHHHHHHcCCeEEEEEcCCC-------------h-----------------hHHHH-hcCCCCEEEEcCCCCCCCC-C--
Q psy12875 49 YVKNIEAAGARVVPILIGQD-------------R-----------------EYYAE-ILTQINGVVIPGGGTGFDH-P-- 94 (308)
Q Consensus 49 ~~~~l~~aG~~~~~i~~~~~-------------~-----------------~~~~~-~l~~~dGlilpGG~~~~~~-~-- 94 (308)
....|+++|.++..+..... . ..+++ ..+++|+|++|||...... .
T Consensus 25 P~~~L~~aG~~V~~aSp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~v~~~dyDalviPGG~g~~~~l~d~ 104 (217)
T PRK11780 25 TLLALDRAGAEAVCFAPDIPQLHVINHLTGEEMGETRNVLVESARIARGEIKDLAEADAEDFDALIVPGGFGAAKNLSNF 104 (217)
T ss_pred HHHHHHHCCCEEEEEeCCCCccccccCccccccccccceeeehhhhhccCCCchhHCChhhCCEEEECCCCchhhhhhhh
Confidence 46888999999887754220 0 11222 3557999999999522110 0
Q ss_pred ---CchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHHhc
Q psy12875 95 ---NGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQVSN 135 (308)
Q Consensus 95 ---~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~~~ 135 (308)
.++.+..+.+.++++++.+++ +||.+||.|.++|+.+ .
T Consensus 105 ~~~~~~lr~~~~v~~lv~~f~~~g--K~vaAIChgp~iL~~~-~ 145 (217)
T PRK11780 105 AVKGAECTVNPDVKALVRAFHQAG--KPIGFICIAPAMLPKI-L 145 (217)
T ss_pred cccchhcccCHHHHHHHHHHHHCC--CEEEEECHHHHHHHHH-h
Confidence 012233446888899999865 9999999999999887 5
No 142
>TIGR01001 metA homoserine O-succinyltransferase. The apparent equivalog from Bacillus subtilis is broken into two tandem reading frames.
Probab=97.84 E-value=0.00012 Score=66.63 Aligned_cols=142 Identities=17% Similarity=0.195 Sum_probs=84.5
Q ss_pred cCCCCEEEEcCCCCCCCCC--CchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHHhcCCccccccccccccccce
Q psy12875 76 LTQINGVVIPGGGTGFDHP--NGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNL 153 (308)
Q Consensus 76 l~~~dGlilpGG~~~~~~~--~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l 153 (308)
-+.+||+|+||-+...-+- -+|=+....++++.+. +-...|.||.|.|.-.....|=...
T Consensus 97 ~~~fDGlIITGAPvE~l~FeeV~YW~El~~I~dwsk~-----~v~Stl~iCWaAqAaLy~~yGI~K~------------- 158 (300)
T TIGR01001 97 DRKFDGLIITGAPVELVPFEDVAYWEELTEIMEWSKH-----NVTSTMFICWAAQAGLKYFYGIPKY------------- 158 (300)
T ss_pred cCCCCEEEEcCCCcCCCCcccCCcHHHHHHHHHHHHH-----cCcchHHHHHHHHHHHHHHcCCCcc-------------
Confidence 3579999999987422110 0233334466666654 4478999999999866552442211
Q ss_pred eeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCcccceeeecccccCCCCCCcCccCCChhHHHhh
Q psy12875 154 KFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKF 233 (308)
Q Consensus 154 ~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 233 (308)
....+++||= . +.. ...++|++|+++.+.+
T Consensus 159 ------------------~l~~KlfGVf------------~-------------h~~-----~~~~pL~rGfdd~f~~-- 188 (300)
T TIGR01001 159 ------------------TLPEKLSGVY------------K-------------HDI-----APDSLLLRGFDDFFLA-- 188 (300)
T ss_pred ------------------ccCCceEEee------------c-------------Ccc-----CCCCccccCCCCcccc--
Confidence 1123445542 1 000 1367899999876643
Q ss_pred ccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEecCCCEEEEeecCCccCc
Q psy12875 234 YQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNAY 297 (308)
Q Consensus 234 ~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~~~p~~GvQFHPE~~~~ 297 (308)
-.+.|. .++...+. ..++++|+|.|++.+ +..+..++...+=++.|||....
T Consensus 189 -----PhSR~t-~i~~~~i~---~~~~L~vla~s~e~G---~~l~~s~d~r~vfi~GH~EYd~~ 240 (300)
T TIGR01001 189 -----PHSRYA-DFDAEDID---KVTDLEILAESDEAG---VYLAANKDERNIFVTGHPEYDAY 240 (300)
T ss_pred -----CCCCCC-CCCHHHHh---cCCCCeEEecCCCcc---eEEEEcCCCCEEEEcCCCccChh
Confidence 122333 24433321 346899999998777 55666666555559999999854
No 143
>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []. Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process
Probab=97.84 E-value=1.2e-05 Score=67.31 Aligned_cols=52 Identities=21% Similarity=0.444 Sum_probs=38.9
Q ss_pred hcCCCCEEEEcCCCCCCCCCCchhH-H--HHHHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875 75 ILTQINGVVIPGGGTGFDHPNGYAD-A--GRQILHLVDKINEEGVTFPVLGVCLGFELILQV 133 (308)
Q Consensus 75 ~l~~~dGlilpGG~~~~~~~~~~~~-~--~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~ 133 (308)
.+.++|+|+||||-.- .+.. + .+.+.+.++++.++| .||+|+|-|||+|...
T Consensus 4 ~~~~~D~i~lpGg~pe-----~~~~~l~~~~~~~~~I~~~~~~G--~pi~aeCGG~~~Lg~~ 58 (158)
T PF07685_consen 4 LPPDADGIYLPGGYPE-----LFALELSRNRGLKEAIREAAEAG--GPIYAECGGYQYLGES 58 (158)
T ss_pred CCCCCCEEEECCCcHH-----HHHHHHHHHhCHHHHHHHHHHcC--CcEEEEchHHHHHHHH
Confidence 5778999999999521 1211 1 124567788888855 9999999999999988
No 144
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=97.83 E-value=1.4e-05 Score=68.26 Aligned_cols=27 Identities=30% Similarity=0.645 Sum_probs=24.3
Q ss_pred cCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875 172 GVTFPVLGVCLGFELILQVSNNDTDFR 198 (308)
Q Consensus 172 ~~~~PilGiClG~Qll~~~~G~~v~~~ 198 (308)
..++|+||||+|||+|+.++||++.+.
T Consensus 68 ~~~~PilGIC~G~Qll~~~~gg~v~~~ 94 (181)
T cd01742 68 ELGVPVLGICYGMQLIAKALGGKVERG 94 (181)
T ss_pred hcCCCEEEEcHHHHHHHHhcCCeEEeC
Confidence 358999999999999999999998764
No 145
>KOG0370|consensus
Probab=97.83 E-value=1.8e-05 Score=80.54 Aligned_cols=82 Identities=18% Similarity=0.285 Sum_probs=53.9
Q ss_pred CccEEEechhh---hHHHHHhcCCcc--ccccccccc-cccceeeecCCCCcchhh----hHhhh-cCCCCeeeeehhHH
Q psy12875 117 TFPVLGVCLGF---ELILQVSNNDTD--FRKSCKVQQ-VNLNLKFLPGAKRSSLFS----QINEE-GVTFPVLGVCLGFE 185 (308)
Q Consensus 117 ~~PvlGIC~G~---Qll~~~~~gg~~--~~~~~~~~~-~~~~l~~~pg~~~~~~~~----~i~~~-~~~~PilGiClG~Q 185 (308)
..-|+.+=-|+ |+-.....|..+ +.-..+... ..+++.+++||++|...+ .+++. ..++|++|||+|||
T Consensus 172 ~~~I~aiDcG~K~N~IRcL~~RGa~vtVvPw~~~i~~~~yDGlflSNGPGdPe~~~~~v~~vr~lL~~~~PvfGIClGHQ 251 (1435)
T KOG0370|consen 172 SLRILAIDCGLKYNQIRCLVKRGAEVTVVPWDYPIAKEEYDGLFLSNGPGDPELCPLLVQNVRELLESNVPVFGICLGHQ 251 (1435)
T ss_pred ccEEEEcccCchHHHHHHHHHhCceEEEecCCccccccccceEEEeCCCCCchhhHHHHHHHHHHHhCCCCeEEEehhhH
Confidence 45677777777 444444344433 111111111 235799999999998533 33342 33599999999999
Q ss_pred HHHHHhCCccccc
Q psy12875 186 LILQVSNNDTDFR 198 (308)
Q Consensus 186 ll~~~~G~~v~~~ 198 (308)
+++.+.|++..+.
T Consensus 252 llA~AaGakT~Km 264 (1435)
T KOG0370|consen 252 LLALAAGAKTYKM 264 (1435)
T ss_pred HHHHhhCCceEEe
Confidence 9999999998775
No 146
>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin
Probab=97.81 E-value=8.3e-05 Score=53.50 Aligned_cols=77 Identities=27% Similarity=0.406 Sum_probs=52.4
Q ss_pred HHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhh
Q psy12875 48 SYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGF 127 (308)
Q Consensus 48 ~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~ 127 (308)
.+.+.+++.+..+.+++.............++|++++|||...... ........+++.++.++ +.|++|+|.|+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lii~g~~~~~~~----~~~~~~~~~~~~~~~~~--~~~i~~~~~g~ 89 (92)
T cd03128 16 SPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPDD----LAWDEALLALLREAAAA--GKPVLGICLGA 89 (92)
T ss_pred cHHHHHHhCCCEEEEEeCCCCcccccCCcccCCEEEECCCCcchhh----hccCHHHHHHHHHHHHc--CCEEEEEeccc
Confidence 5578889999988888866543211124668999999999742211 11123566777776664 48999999999
Q ss_pred hHH
Q psy12875 128 ELI 130 (308)
Q Consensus 128 Qll 130 (308)
|++
T Consensus 90 ~~~ 92 (92)
T cd03128 90 QLL 92 (92)
T ss_pred ccC
Confidence 864
No 147
>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional
Probab=97.78 E-value=1.7e-05 Score=71.58 Aligned_cols=34 Identities=15% Similarity=0.411 Sum_probs=28.2
Q ss_pred hhhHhh-hcCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875 165 FSQINE-EGVTFPVLGVCLGFELILQVSNNDTDFR 198 (308)
Q Consensus 165 ~~~i~~-~~~~~PilGiClG~Qll~~~~G~~v~~~ 198 (308)
...++. ...++|+||||+|||+|+.++||++...
T Consensus 97 ~~li~~a~~~~~PILGICrG~Qllnva~GGtl~~~ 131 (254)
T PRK11366 97 MALINAALERRIPIFAICRGLQELVVATGGSLHRK 131 (254)
T ss_pred HHHHHHHHHCCCCEEEECHhHHHHHHHhCCeEeec
Confidence 345554 4678999999999999999999999763
No 148
>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th
Probab=97.70 E-value=3.2e-05 Score=69.04 Aligned_cols=48 Identities=19% Similarity=0.246 Sum_probs=35.8
Q ss_pred ceeeecCCCCcch---hhhHhh-hcCCCCeeeeehhHHHHHHHhCCcccccC
Q psy12875 152 NLKFLPGAKRSSL---FSQINE-EGVTFPVLGVCLGFELILQVSNNDTDFRK 199 (308)
Q Consensus 152 ~l~~~pg~~~~~~---~~~i~~-~~~~~PilGiClG~Qll~~~~G~~v~~~~ 199 (308)
++.+.+|++.+.. ...++. ...++|+||||+|||+|+.++|+++.+.+
T Consensus 58 givl~GG~~~~~~~~~~~~i~~~~~~~~PvlGIClG~Q~l~~~~g~~~~~~~ 109 (235)
T cd01746 58 GILVPGGFGIRGVEGKILAIKYARENNIPFLGICLGMQLAVIEFARNVLGLP 109 (235)
T ss_pred EEEECCCCCCcchhhHHHHHHHHHHCCceEEEEEhHHHHHHHHHHHHhcCCc
Confidence 5677777766553 223333 25689999999999999999999987653
No 149
>PRK07053 glutamine amidotransferase; Provisional
Probab=97.67 E-value=4.7e-05 Score=67.94 Aligned_cols=47 Identities=23% Similarity=0.322 Sum_probs=33.7
Q ss_pred ceeeecCCCCcc----------hhhhHhh-hcCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875 152 NLKFLPGAKRSS----------LFSQINE-EGVTFPVLGVCLGFELILQVSNNDTDFR 198 (308)
Q Consensus 152 ~l~~~pg~~~~~----------~~~~i~~-~~~~~PilGiClG~Qll~~~~G~~v~~~ 198 (308)
.+.+..||.... ....+++ ...++|+||||+|||+|+.++||+|.+.
T Consensus 50 ~lii~Ggp~~~~d~~~~p~~~~~~~~i~~~~~~~~PvlGIC~G~Qlla~alGg~V~~~ 107 (234)
T PRK07053 50 LLVVLGGPIGVYDDELYPFLAPEIALLRQRLAAGLPTLGICLGAQLIARALGARVYPG 107 (234)
T ss_pred EEEECCCCCCCCCCCcCCcHHHHHHHHHHHHHCCCCEEEECccHHHHHHHcCCcEecC
Confidence 466666665432 1233443 2568999999999999999999999763
No 150
>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.
Probab=97.65 E-value=0.00017 Score=63.27 Aligned_cols=86 Identities=17% Similarity=0.321 Sum_probs=55.9
Q ss_pred HHHHHHHHcCCeEEEEEcCCC----------h--------------------hHHHH-hcCCCCEEEEcCCCCCCCCCCc
Q psy12875 48 SYVKNIEAAGARVVPILIGQD----------R--------------------EYYAE-ILTQINGVVIPGGGTGFDHPNG 96 (308)
Q Consensus 48 ~~~~~l~~aG~~~~~i~~~~~----------~--------------------~~~~~-~l~~~dGlilpGG~~~~~~~~~ 96 (308)
...+.|+++|.++..+..... . ..+++ .++++|+|++|||......-.+
T Consensus 21 ~p~~~L~raG~~V~~aS~~gg~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ev~~~dyDalviPGG~~~~~~l~D 100 (213)
T cd03133 21 LTLLALDRAGAEVQCFAPDIEQMHVVNHLTGEAEGESRNVLVESARIARGNIKDLAKLKAADFDALIFPGGFGAAKNLSD 100 (213)
T ss_pred HHHHHHHHCCCEEEEEeCCCCccCccccccccccccccceeeehhhhhhcCCCchHHCCHhHCCEEEECCCCchhhhhhh
Confidence 346888999999888765210 0 11222 2457999999999521110000
Q ss_pred hh------HHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHHhcC
Q psy12875 97 YA------DAGRQILHLVDKINEEGVTFPVLGVCLGFELILQVSNN 136 (308)
Q Consensus 97 ~~------~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~~~g 136 (308)
|. +..+.+.++++++.+++ +||.+||.|.++|+.+ .+
T Consensus 101 ~~~~~~~~~~~~~l~~lv~~f~~~g--K~VaAIChgp~~L~~~-~~ 143 (213)
T cd03133 101 FAVKGADCTVNPEVERLVREFHQAG--KPIGAICIAPALAAKI-LG 143 (213)
T ss_pred hcccccccccCHHHHHHHHHHHHCC--CeEEEECHHHHHHHHH-hc
Confidence 11 11246788889999865 9999999999999887 53
No 151
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=97.58 E-value=6.3e-05 Score=65.26 Aligned_cols=40 Identities=38% Similarity=0.640 Sum_probs=27.9
Q ss_pred eeeecCCCCcch-hhhHh------hh-cCCCCeeeeehhHHHHHHHhCC
Q psy12875 153 LKFLPGAKRSSL-FSQIN------EE-GVTFPVLGVCLGFELILQVSNN 193 (308)
Q Consensus 153 l~~~pg~~~~~~-~~~i~------~~-~~~~PilGiClG~Qll~~~~G~ 193 (308)
+. .||++.+.. ...++ .. ..++|+||||+|||+|+.++++
T Consensus 42 iI-lPG~G~~~~~~~~l~~~~l~~~i~~~~~PilGIClG~Qll~~~~~~ 89 (196)
T PRK13170 42 LF-LPGVGTAQAAMDQLRERELIDLIKACTQPVLGICLGMQLLGERSEE 89 (196)
T ss_pred EE-ECCCCchHHHHHHHHHcChHHHHHHcCCCEEEECHHHHHHhhhccc
Confidence 44 499988662 11111 11 2479999999999999999853
No 152
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=97.49 E-value=0.00061 Score=60.66 Aligned_cols=98 Identities=13% Similarity=0.142 Sum_probs=67.0
Q ss_pred CCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCc
Q psy12875 17 DTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNG 96 (308)
Q Consensus 17 ~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~ 96 (308)
.+|.|...+.-+.. ..++.|+ .++.+++++.|+++..+.... +..+.+.++|+|+++||... .
T Consensus 30 ~~~~v~fIPtAs~~--------~~~~~y~-~~~~~af~~lG~~v~~l~~~~---d~~~~l~~ad~I~v~GGnt~-----~ 92 (233)
T PRK05282 30 GRRKAVFIPYAGVT--------QSWDDYT-AKVAEALAPLGIEVTGIHRVA---DPVAAIENAEAIFVGGGNTF-----Q 92 (233)
T ss_pred CCCeEEEECCCCCC--------CCHHHHH-HHHHHHHHHCCCEEEEeccch---hhHHHHhcCCEEEECCccHH-----H
Confidence 35777777664421 1234676 468899999999988776432 23346789999999999631 1
Q ss_pred hhHHHH--HHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875 97 YADAGR--QILHLVDKINEEGVTFPVLGVCLGFELILQV 133 (308)
Q Consensus 97 ~~~~~~--~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~ 133 (308)
+.+..+ .+.+.+++++++| +|++|+|.|.-+++..
T Consensus 93 l~~~l~~~gl~~~l~~~~~~G--~~~~G~SAGAii~~~~ 129 (233)
T PRK05282 93 LLKQLYERGLLAPIREAVKNG--TPYIGWSAGANVAGPT 129 (233)
T ss_pred HHHHHHHCCcHHHHHHHHHCC--CEEEEECHHHHhhhcc
Confidence 222222 4667788888855 9999999999777654
No 153
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=97.47 E-value=0.0001 Score=72.49 Aligned_cols=52 Identities=25% Similarity=0.409 Sum_probs=36.9
Q ss_pred cCCCCEEEEcCCCCCCCCCCchhHHHH--HHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875 76 LTQINGVVIPGGGTGFDHPNGYADAGR--QILHLVDKINEEGVTFPVLGVCLGFELILQV 133 (308)
Q Consensus 76 l~~~dGlilpGG~~~~~~~~~~~~~~~--~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~ 133 (308)
+.++|+|++|||..... .....+ .+.+.++++.++| .||+|||-|||+|...
T Consensus 282 l~~~d~lilpGg~~~~~----~~~~l~~~~~~~~i~~~~~~G--~pvlgiCgG~q~Lg~~ 335 (475)
T TIGR00313 282 LTGCDAVIIPGSKSTIA----DLYALKQSGFAEEILDFAKEG--GIVIGICGGYQMLGKE 335 (475)
T ss_pred cccCCEEEECCcchHHH----HHHHHHhcChHHHHHHHHHcC--CcEEEEcHHHHHhhhh
Confidence 56899999999962110 111112 3566677777754 9999999999999987
No 154
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=97.47 E-value=0.00028 Score=62.82 Aligned_cols=52 Identities=15% Similarity=0.289 Sum_probs=38.7
Q ss_pred cCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875 76 LTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQV 133 (308)
Q Consensus 76 l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~ 133 (308)
.++||+|++|||..... ++ ...+.+.++++++.+++ +||.+||+|.++|+.+
T Consensus 92 ~~dYDav~iPGG~g~~~---dl-~~~~~l~~ll~~f~~~g--K~iaAIChgp~~L~~a 143 (231)
T cd03147 92 PDDYGIFFVAGGHGTLF---DF-PHATNLQKIAQQIYANG--GVVAAVCHGPAILANL 143 (231)
T ss_pred HhhCcEEEECCCCchhh---hc-ccCHHHHHHHHHHHHcC--CEEEEEChHHHHHHhh
Confidence 45799999999953211 12 12346788888888855 9999999999988875
No 155
>PRK06490 glutamine amidotransferase; Provisional
Probab=97.47 E-value=0.00013 Score=65.29 Aligned_cols=49 Identities=16% Similarity=0.245 Sum_probs=37.0
Q ss_pred cceeeecCCCCcc--------hhhhHhh-hcCCCCeeeeehhHHHHHHHhCCcccccC
Q psy12875 151 LNLKFLPGAKRSS--------LFSQINE-EGVTFPVLGVCLGFELILQVSNNDTDFRK 199 (308)
Q Consensus 151 ~~l~~~pg~~~~~--------~~~~i~~-~~~~~PilGiClG~Qll~~~~G~~v~~~~ 199 (308)
..+.+.+||..+. ....|++ ...++|+||||+|||+|+.++||+|.+.+
T Consensus 54 dgvii~Ggp~~~~d~~~wi~~~~~~i~~~~~~~~PvLGIC~G~Qlla~alGG~V~~~~ 111 (239)
T PRK06490 54 AGAVIFGGPMSANDPDDFIRREIDWISVPLKENKPFLGICLGAQMLARHLGARVAPHP 111 (239)
T ss_pred CEEEEECCCCCCCCCchHHHHHHHHHHHHHHCCCCEEEECHhHHHHHHHcCCEeecCC
Confidence 3577888887643 1234443 35689999999999999999999998753
No 156
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional
Probab=97.46 E-value=0.00014 Score=63.84 Aligned_cols=42 Identities=29% Similarity=0.594 Sum_probs=30.2
Q ss_pred eeeecCCCCcc----------hhhhHhh-hcCCCCeeeeehhHHHHHHHhCCc
Q psy12875 153 LKFLPGAKRSS----------LFSQINE-EGVTFPVLGVCLGFELILQVSNND 194 (308)
Q Consensus 153 l~~~pg~~~~~----------~~~~i~~-~~~~~PilGiClG~Qll~~~~G~~ 194 (308)
..+.||++.+. +...+++ ...++|+||||+|||+|++.+++.
T Consensus 42 ~iIlPG~g~~~~~~~~l~~~gl~~~i~~~~~~~~pvlGIClG~Qll~~~~~~~ 94 (210)
T CHL00188 42 ALVLPGVGSFDLAMKKLEKKGLITPIKKWIAEGNPFIGICLGLHLLFETSEEG 94 (210)
T ss_pred EEEECCCCchHHHHHHHHHCCHHHHHHHHHHcCCCEEEECHHHHHHhhccccC
Confidence 45679988854 1223333 356899999999999999986654
No 157
>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.
Probab=97.42 E-value=0.00052 Score=61.14 Aligned_cols=51 Identities=18% Similarity=0.251 Sum_probs=38.0
Q ss_pred CCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875 77 TQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQV 133 (308)
Q Consensus 77 ~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~ 133 (308)
++||+|++|||..... .....+.+.++++++++++ +||.+||+|.+.|..+
T Consensus 95 ~dYDav~iPGG~g~~~----dl~~~~~l~~ll~~f~~~g--K~VaAICHGp~~L~~a 145 (232)
T cd03148 95 SEYAAVFIPGGHGALI----GIPESQDVAAALQWAIKND--RFVITLCHGPAAFLAA 145 (232)
T ss_pred hhceEEEECCCCCChh----hcccCHHHHHHHHHHHHcC--CEEEEECcHHHHHHhc
Confidence 5799999999953221 1222346788889999865 9999999999977755
No 158
>PRK04155 chaperone protein HchA; Provisional
Probab=97.40 E-value=0.00061 Score=62.57 Aligned_cols=78 Identities=14% Similarity=0.213 Sum_probs=53.7
Q ss_pred HHHHHHcCCeEEEEEcCCCh-----------------------------hHHHHh-------cCCCCEEEEcCCCCCCCC
Q psy12875 50 VKNIEAAGARVVPILIGQDR-----------------------------EYYAEI-------LTQINGVVIPGGGTGFDH 93 (308)
Q Consensus 50 ~~~l~~aG~~~~~i~~~~~~-----------------------------~~~~~~-------l~~~dGlilpGG~~~~~~ 93 (308)
...|+++|+++.++...... ..++.. .++||+|++|||.....
T Consensus 83 ~~~L~~AG~eVdiAS~~G~~~~~d~~s~~~~d~~v~~~~~~~~~~l~~~~~l~~v~~~~~~~~~dYDaV~iPGG~g~~~- 161 (287)
T PRK04155 83 MYHLHKAGFEFDVATLSGNPVKFEYWAMPHEDEAVMGFYEKYKSKFKQPKKLADVVANLLAPDSDYAAVFIPGGHGALI- 161 (287)
T ss_pred HHHHHHCCCEEEEEecCCCccccccccccccchhHHHHHHHhhhhccCceeHHHhhhhhcCCcccccEEEECCCCchHH-
Confidence 58889999999988753211 001211 46899999999952111
Q ss_pred CCchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875 94 PNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQV 133 (308)
Q Consensus 94 ~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~ 133 (308)
.....+.+.++++.+.+++ +||.+||+|.++|..+
T Consensus 162 ---dL~~~~~l~~ll~~~~~~~--K~VaAICHGPa~Ll~a 196 (287)
T PRK04155 162 ---GLPESEDVAAALQWALDND--RFIITLCHGPAALLAA 196 (287)
T ss_pred ---HHhhCHHHHHHHHHHHHcC--CEEEEEChHHHHHHHc
Confidence 1223346788888888855 9999999999877765
No 159
>KOG1907|consensus
Probab=97.39 E-value=0.0028 Score=64.83 Aligned_cols=99 Identities=19% Similarity=0.238 Sum_probs=60.1
Q ss_pred CCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChhHHH--HhcCCCCEEEEcCCCCCCCCC
Q psy12875 17 DTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYYA--EILTQINGVVIPGGGTGFDHP 94 (308)
Q Consensus 17 ~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~--~~l~~~dGlilpGG~~~~~~~ 94 (308)
++|.++|+-....+ + +.....++.++|++++.+...+ .+. ..|+++-||+++||-+..+.-
T Consensus 1057 ~~PkVAilREeGvN----------g----~rEMa~af~~AgF~~~DVtmtD---lL~G~~~ld~frGlaf~GGFSYaDvL 1119 (1320)
T KOG1907|consen 1057 TAPKVAILREEGVN----------G----DREMAAAFYAAGFETVDVTMTD---LLAGRHHLDDFRGLAFCGGFSYADVL 1119 (1320)
T ss_pred CCCceEEeeccccc----------c----HHHHHHHHHHcCCceeeeeeeh---hhcCceeHhHhcceeeecCcchHhhh
Confidence 48999998765443 1 2344568889999988776532 222 257889999999997532221
Q ss_pred CchhHHHH------HHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875 95 NGYADAGR------QILHLVDKINEEGVTFPVLGVCLGFELILQV 133 (308)
Q Consensus 95 ~~~~~~~~------~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~ 133 (308)
..-..|.. .+..-..++.+. .+.--||||.|+|+|+..
T Consensus 1120 gSakGWAasil~ne~v~~QF~~F~~R-~DtFslGiCNGCQlms~L 1163 (1320)
T KOG1907|consen 1120 GSAKGWAASILFNESVRSQFEAFFNR-QDTFSLGICNGCQLMSRL 1163 (1320)
T ss_pred ccccchhhheeeChhHHHHHHHHhcC-CCceeeecccHhHHHHHh
Confidence 00001111 222222222222 346789999999999976
No 160
>PRK00074 guaA GMP synthase; Reviewed
Probab=97.36 E-value=0.00014 Score=72.16 Aligned_cols=27 Identities=26% Similarity=0.608 Sum_probs=24.5
Q ss_pred cCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875 172 GVTFPVLGVCLGFELILQVSNNDTDFR 198 (308)
Q Consensus 172 ~~~~PilGiClG~Qll~~~~G~~v~~~ 198 (308)
..++|+||||+|||+|+.++||+|.+.
T Consensus 73 ~~~~PvLGIC~G~QlLa~~lGG~V~~~ 99 (511)
T PRK00074 73 ELGVPVLGICYGMQLMAHQLGGKVERA 99 (511)
T ss_pred hCCCCEEEECHHHHHHHHHhCCeEEec
Confidence 468999999999999999999998764
No 161
>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=97.34 E-value=0.00017 Score=62.83 Aligned_cols=38 Identities=32% Similarity=0.598 Sum_probs=27.9
Q ss_pred ceeeecCCCCcch----------hhhHhh--hcCCCCeeeeehhHHHHHHH
Q psy12875 152 NLKFLPGAKRSSL----------FSQINE--EGVTFPVLGVCLGFELILQV 190 (308)
Q Consensus 152 ~l~~~pg~~~~~~----------~~~i~~--~~~~~PilGiClG~Qll~~~ 190 (308)
.+.+ ||++.+.. ...+++ ...++|+||||+|||+|+.+
T Consensus 40 ~lil-PG~g~~~~~~~~l~~~~~~~~l~~~~~~~~~pvlGiC~G~Q~l~~~ 89 (201)
T PRK13152 40 KLLL-PGVGSFKEAMKNLKELGFIEALKEQVLVQKKPILGICLGMQLFLER 89 (201)
T ss_pred EEEE-CCCCchHHHHHHHHHcCcHHHHHHHHHhCCCcEEEECHhHHHHhhc
Confidence 3555 99998642 233333 25689999999999999997
No 162
>COG2071 Predicted glutamine amidotransferases [General function prediction only]
Probab=97.30 E-value=0.00023 Score=62.84 Aligned_cols=34 Identities=21% Similarity=0.351 Sum_probs=29.5
Q ss_pred hhhhHhh-hcCCCCeeeeehhHHHHHHHhCCcccc
Q psy12875 164 LFSQINE-EGVTFPVLGVCLGFELILQVSNNDTDF 197 (308)
Q Consensus 164 ~~~~i~~-~~~~~PilGiClG~Qll~~~~G~~v~~ 197 (308)
.+..|+. .++++||||||-|+|+|..+|||++..
T Consensus 96 E~aLi~~ALe~~iPILgICRG~QllNVa~GGtL~q 130 (243)
T COG2071 96 ELALIRAALERGIPILGICRGLQLLNVALGGTLYQ 130 (243)
T ss_pred HHHHHHHHHHcCCCEEEEccchHHHHHHhcCeeeh
Confidence 4667775 578999999999999999999999765
No 163
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=97.29 E-value=0.00024 Score=69.85 Aligned_cols=49 Identities=20% Similarity=0.256 Sum_probs=38.8
Q ss_pred cceeeecCCCCcch---hhhHhhh-cCCCCeeeeehhHHHHHHHhCCcccccC
Q psy12875 151 LNLKFLPGAKRSSL---FSQINEE-GVTFPVLGVCLGFELILQVSNNDTDFRK 199 (308)
Q Consensus 151 ~~l~~~pg~~~~~~---~~~i~~~-~~~~PilGiClG~Qll~~~~G~~v~~~~ 199 (308)
.++.+.+|++.+.. +..++.. ..++|+||||+|||+++.++|+++...+
T Consensus 345 dGIiLpGG~G~~~~~g~i~ai~~a~e~~iP~LGIClG~Qll~i~~grnv~gl~ 397 (525)
T TIGR00337 345 DGILVPGGFGERGVEGKILAIKYARENNIPFLGICLGMQLAVIEFARNVLGLK 397 (525)
T ss_pred CEEEeCCCCCChhhcChHHHHHHHHHcCCCEEEEcHHHHHHHHHHHHHhcCCC
Confidence 56888899987553 3345544 4789999999999999999999887754
No 164
>KOG1622|consensus
Probab=97.27 E-value=0.00022 Score=67.65 Aligned_cols=46 Identities=22% Similarity=0.345 Sum_probs=33.6
Q ss_pred cceeeecCCCCcc------hhhhHhhhcCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875 151 LNLKFLPGAKRSS------LFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFR 198 (308)
Q Consensus 151 ~~l~~~pg~~~~~------~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~ 198 (308)
.+++++.||.... ..+.+ +...+|+||||||||+|+..+|+.|.+.
T Consensus 61 rgiIiSGGP~SVya~dAP~~dp~i--f~~~vpvLGICYGmQ~i~~~~Gg~V~~~ 112 (552)
T KOG1622|consen 61 RGIIISGGPNSVYAEDAPSFDPAI--FELGVPVLGICYGMQLINKLNGGTVVKG 112 (552)
T ss_pred eEEEEeCCCCccccCcCCCCChhH--hccCCcceeehhHHHHHHHHhCCccccc
Confidence 4577777776532 11122 2347999999999999999999999774
No 165
>PRK00758 GMP synthase subunit A; Validated
Probab=97.27 E-value=0.00023 Score=61.02 Aligned_cols=45 Identities=22% Similarity=0.420 Sum_probs=32.2
Q ss_pred ceeeecCCCCcc---hhhhHhhhcCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875 152 NLKFLPGAKRSS---LFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFR 198 (308)
Q Consensus 152 ~l~~~pg~~~~~---~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~ 198 (308)
.+.+.+||..+. ....++ ..++|+||||+|||+|+.++||+|.+.
T Consensus 44 givi~Gg~~~~~~~~~~~~l~--~~~~PilGIC~G~Q~L~~a~Gg~v~~~ 91 (184)
T PRK00758 44 GLILSGGPDIERAGNCPEYLK--ELDVPILGICLGHQLIAKAFGGEVGRG 91 (184)
T ss_pred EEEECCCCChhhccccHHHHH--hCCCCEEEEeHHHHHHHHhcCcEEecC
Confidence 477777773211 111222 357999999999999999999998764
No 166
>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=97.24 E-value=0.00028 Score=60.91 Aligned_cols=38 Identities=24% Similarity=0.489 Sum_probs=28.0
Q ss_pred eeeecCCCCcc-h---------hhhHhhhcCCCCeeeeehhHHHHHHHh
Q psy12875 153 LKFLPGAKRSS-L---------FSQINEEGVTFPVLGVCLGFELILQVS 191 (308)
Q Consensus 153 l~~~pg~~~~~-~---------~~~i~~~~~~~PilGiClG~Qll~~~~ 191 (308)
..+.||++.+. . .+.|++ ..++|+||||+|||+|+...
T Consensus 40 ~lIlPG~g~~~~~~~~L~~~gl~~~i~~-~~g~PvlGIClGmQlL~~~~ 87 (192)
T PRK13142 40 TIILPGVGHFKDAMSEIKRLNLNAILAK-NTDKKMIGICLGMQLMYEHS 87 (192)
T ss_pred EEEECCCCCHHHHHHHHHHCCcHHHHHH-hCCCeEEEECHHHHHHhhhc
Confidence 34789998744 1 223333 45799999999999999976
No 167
>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=97.23 E-value=0.00037 Score=60.08 Aligned_cols=29 Identities=21% Similarity=0.462 Sum_probs=23.6
Q ss_pred hhHhhh-cCCCCeeeeehhHHHHHHHhCCc
Q psy12875 166 SQINEE-GVTFPVLGVCLGFELILQVSNND 194 (308)
Q Consensus 166 ~~i~~~-~~~~PilGiClG~Qll~~~~G~~ 194 (308)
..++.. ..++|+||||+|||+|+.++||+
T Consensus 91 ~~~~~~~~~~~PilgiC~G~Q~l~~~~Gg~ 120 (189)
T cd01745 91 ALLRAALERGKPILGICRGMQLLNVALGGT 120 (189)
T ss_pred HHHHHHHHCCCCEEEEcchHHHHHHHhCCe
Confidence 344443 56899999999999999999876
No 168
>PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=97.21 E-value=0.00042 Score=60.81 Aligned_cols=40 Identities=30% Similarity=0.644 Sum_probs=29.4
Q ss_pred eeeecCCCCcc----------hhhhHhh-hcCCCCeeeeehhHHHHHHHhC
Q psy12875 153 LKFLPGAKRSS----------LFSQINE-EGVTFPVLGVCLGFELILQVSN 192 (308)
Q Consensus 153 l~~~pg~~~~~----------~~~~i~~-~~~~~PilGiClG~Qll~~~~G 192 (308)
..+.||++.+. +...+++ ...++|+||||+|||+|+.+++
T Consensus 40 ~iIlPG~g~~~~~~~~l~~~gl~~~i~~~~~~~~pilGiC~G~Q~l~~~~~ 90 (210)
T PRK14004 40 ALILPGDGHFDKAMENLNSTGLRSTIDKHVESGKPLFGICIGFQILFESSE 90 (210)
T ss_pred EEEECCCCchHHHHHHHHHcCcHHHHHHHHHcCCCEEEECHhHHHHHHhcc
Confidence 55689998643 1223333 3578999999999999999876
No 169
>cd03144 GATase1_ScBLP_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Biotin-apoprotein ligase modifies proteins by covalently attaching biotin. ScBLP is known to biotinylate acety-CoA carboxylase and pyruvate carboxylase. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, the Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in a typical GATase1 domain is conserved.
Probab=97.21 E-value=0.00029 Score=55.62 Aligned_cols=48 Identities=21% Similarity=0.275 Sum_probs=31.4
Q ss_pred CCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHH
Q psy12875 77 TQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELI 130 (308)
Q Consensus 77 ~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll 130 (308)
.++|.||+|||. . .+ .+......-.+.++++.+++ .|+||||+|.=+-
T Consensus 43 ~~ad~lVlPGGa-~-~~--~~~~L~~~g~~~i~~~v~~g--~p~LGIClGAy~a 90 (114)
T cd03144 43 SKTALLVVPGGA-D-LP--YCRALNGKGNRRIRNFVRNG--GNYLGICAGAYLA 90 (114)
T ss_pred hCCCEEEECCCC-h-HH--HHHHHHhhCcHHHHHHHHCC--CcEEEEecCccce
Confidence 479999999964 2 11 12222222266678877744 9999999997554
No 170
>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.
Probab=97.14 E-value=0.00027 Score=62.37 Aligned_cols=26 Identities=27% Similarity=0.482 Sum_probs=21.9
Q ss_pred cCCCCeeeeehhHHHHHHHhCCcccc
Q psy12875 172 GVTFPVLGVCLGFELILQVSNNDTDF 197 (308)
Q Consensus 172 ~~~~PilGiClG~Qll~~~~G~~v~~ 197 (308)
+.++|+||||.|||+|..++||++..
T Consensus 104 ~~~~PilGICrG~Q~lnv~~GGtl~q 129 (217)
T PF07722_consen 104 GRGKPILGICRGMQLLNVAFGGTLYQ 129 (217)
T ss_dssp CTT--EEEETHHHHHHHHHCCSSEES
T ss_pred hcCCCEEEEcHHHHHHHHHhCCCcee
Confidence 67999999999999999999999755
No 171
>PRK05380 pyrG CTP synthetase; Validated
Probab=97.12 E-value=0.0005 Score=67.63 Aligned_cols=46 Identities=20% Similarity=0.271 Sum_probs=35.7
Q ss_pred cceeeecCCCCcc---hhhhHhhh-cCCCCeeeeehhHHHHHHHhCCccc
Q psy12875 151 LNLKFLPGAKRSS---LFSQINEE-GVTFPVLGVCLGFELILQVSNNDTD 196 (308)
Q Consensus 151 ~~l~~~pg~~~~~---~~~~i~~~-~~~~PilGiClG~Qll~~~~G~~v~ 196 (308)
.++.+.+|++.+. ....++.. ..++|+||||+|||+|+.++|+++.
T Consensus 345 DGIIlpGGfG~~~~~g~i~~i~~a~e~~iPiLGIClGmQll~va~Ggnv~ 394 (533)
T PRK05380 345 DGILVPGGFGERGIEGKILAIRYARENNIPFLGICLGMQLAVIEFARNVL 394 (533)
T ss_pred CEEEecCCCCccccccHHHHHHHHHHCCCcEEEEchHHHHHHHHhccccc
Confidence 4678888877654 24444443 5689999999999999999999984
No 172
>TIGR01382 PfpI intracellular protease, PfpI family. The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.
Probab=97.05 E-value=0.002 Score=53.83 Aligned_cols=79 Identities=24% Similarity=0.407 Sum_probs=51.8
Q ss_pred HHHHHHHHcCCeEEEEEcCCC------------hhHHHH-hcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHc
Q psy12875 48 SYVKNIEAAGARVVPILIGQD------------REYYAE-ILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEE 114 (308)
Q Consensus 48 ~~~~~l~~aG~~~~~i~~~~~------------~~~~~~-~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~ 114 (308)
...+.++++|.++..+..... +..++. ...++|+|++|||.. + ........+.++++++.++
T Consensus 17 ~~~~~l~~ag~~v~~vs~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~vvv~Gg~~---~--~~~~~~~~l~~~l~~~~~~ 91 (166)
T TIGR01382 17 YPLDRLREAGHEVDTVSKEAGTTVGKHGYSVTVDATIDEVNPEEYDALVIPGGRA---P--EYLRLNNKAVRLVREFVEK 91 (166)
T ss_pred HHHHHHHHCCCEEEEEecCCCceeccCCceeeccCChhhCCHHHCcEEEECCCCC---H--HHhccCHHHHHHHHHHHHc
Confidence 446778888888776643211 001222 123689999999852 1 1111224678888888885
Q ss_pred CCCccEEEechhhhHHHHH
Q psy12875 115 GVTFPVLGVCLGFELILQV 133 (308)
Q Consensus 115 g~~~PvlGIC~G~Qll~~~ 133 (308)
+ +|+.+||.|.++|+.+
T Consensus 92 ~--~~i~~ic~G~~~La~a 108 (166)
T TIGR01382 92 G--KPVAAICHGPQLLISA 108 (166)
T ss_pred C--CEEEEEChHHHHHHhc
Confidence 4 9999999999999976
No 173
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=97.04 E-value=0.0054 Score=53.63 Aligned_cols=99 Identities=17% Similarity=0.221 Sum_probs=67.9
Q ss_pred CCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCC--ChhHHHHhcCCCCEEEEcCCCCCCCCC
Q psy12875 17 DTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQ--DREYYAEILTQINGVVIPGGGTGFDHP 94 (308)
Q Consensus 17 ~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~--~~~~~~~~l~~~dGlilpGG~~~~~~~ 94 (308)
..|.|.+.+.-+.. ...|. ..|.+++++.|+++..++... +..+..+.+.++|+|+++||.. .
T Consensus 28 ~~~~i~~iptA~~~----------~~~~~-~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l~~ad~I~~~GG~~--~-- 92 (210)
T cd03129 28 AGARVLFIPTASGD----------RDEYG-EEYRAAFERLGVEVVHLLLIDTANDPDVVARLLEADGIFVGGGNQ--L-- 92 (210)
T ss_pred CCCeEEEEeCCCCC----------hHHHH-HHHHHHHHHcCCceEEEeccCCCCCHHHHHHHhhCCEEEEcCCcH--H--
Confidence 36888888765432 12343 478899999999988777543 2345556789999999999952 1
Q ss_pred CchhHHHH--HHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875 95 NGYADAGR--QILHLVDKINEEGVTFPVLGVCLGFELILQV 133 (308)
Q Consensus 95 ~~~~~~~~--~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~ 133 (308)
.+.+..+ ...+.+++.+++| .|+.|+|.|..++...
T Consensus 93 -~~~~~l~~t~~~~~i~~~~~~G--~v~~G~SAGA~~~~~~ 130 (210)
T cd03129 93 -RLLSVLRETPLLDAILKRVARG--VVIGGTSAGAAVMGET 130 (210)
T ss_pred -HHHHHHHhCChHHHHHHHHHcC--CeEEEcCHHHHHhhhc
Confidence 1223222 2566666666644 9999999999998864
No 174
>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=96.95 E-value=0.00046 Score=59.98 Aligned_cols=48 Identities=21% Similarity=0.286 Sum_probs=33.5
Q ss_pred cceeeecCCCCcc--------hhhhHhhh-cCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875 151 LNLKFLPGAKRSS--------LFSQINEE-GVTFPVLGVCLGFELILQVSNNDTDFR 198 (308)
Q Consensus 151 ~~l~~~pg~~~~~--------~~~~i~~~-~~~~PilGiClG~Qll~~~~G~~v~~~ 198 (308)
..++++-||.... ..+.|.+. ...+|+||||||||+|+.++||+|.+.
T Consensus 47 ~giIlsGgp~sv~~~~~w~~~~~~~i~~~~~p~~pvLGIC~G~Ql~A~~lGg~V~~~ 103 (198)
T COG0518 47 DGIIISGGPMSVYDEDPWLPREKDLIKDAGVPGKPVLGICLGHQLLAKALGGKVERG 103 (198)
T ss_pred CEEEEcCCCCCCccccccchhHHHHHHHhCCCCCCEEEEChhHHHHHHHhCCEEecc
Confidence 4577777774322 12233333 335679999999999999999999774
No 175
>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.
Probab=96.92 E-value=0.0037 Score=52.17 Aligned_cols=79 Identities=24% Similarity=0.311 Sum_probs=52.9
Q ss_pred HHHHHHHHcCCeEEEEEcC-CCh-----h--------HHHH-hcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHH
Q psy12875 48 SYVKNIEAAGARVVPILIG-QDR-----E--------YYAE-ILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKIN 112 (308)
Q Consensus 48 ~~~~~l~~aG~~~~~i~~~-~~~-----~--------~~~~-~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~ 112 (308)
...+.|+++|.++..+... ... . .++. ....+|+|++|||. ... .....+.+.++++++.
T Consensus 17 ~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~~i~~d~~~~~~~~~~~D~lvvpGG~-~~~----~~~~~~~~~~~l~~~~ 91 (165)
T cd03134 17 YPLYRLREAGAEVVVAGPEAGGEIQGKHGYDTVTVDLTIADVDADDYDALVIPGGT-NPD----KLRRDPDAVAFVRAFA 91 (165)
T ss_pred HHHHHHHHCCCEEEEEccCCCcccccCcCceeecCCCChHHCCHHHCCEEEECCCC-Chh----hhccCHHHHHHHHHHH
Confidence 3456788889888877544 210 0 1222 12368999999996 211 1112246788888888
Q ss_pred HcCCCccEEEechhhhHHHHH
Q psy12875 113 EEGVTFPVLGVCLGFELILQV 133 (308)
Q Consensus 113 ~~g~~~PvlGIC~G~Qll~~~ 133 (308)
+++ +||.+||.|.++|+.+
T Consensus 92 ~~~--~~i~~ic~G~~~La~a 110 (165)
T cd03134 92 EAG--KPVAAICHGPWVLISA 110 (165)
T ss_pred HcC--CeEEEEchHHHHHHhc
Confidence 854 9999999999999876
No 176
>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]
Probab=96.87 E-value=0.0012 Score=56.63 Aligned_cols=79 Identities=20% Similarity=0.305 Sum_probs=53.8
Q ss_pred HHHHHHHcCCeEEEEEcCCC--------------hhHHHHh--cCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHH
Q psy12875 49 YVKNIEAAGARVVPILIGQD--------------REYYAEI--LTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKIN 112 (308)
Q Consensus 49 ~~~~l~~aG~~~~~i~~~~~--------------~~~~~~~--l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~ 112 (308)
-.+.|+++|..+..+..... ....-.. .+++|+|++|||.. .+ .+......+.++++++.
T Consensus 21 p~~~l~~ag~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ydal~ipGG~~--~~--~~~~~~~~~~~~v~~~~ 96 (188)
T COG0693 21 PYDVLRRAGFEVDVASPEGKGKSVTSKRGGLVVADDKAFDDADAADYDALVIPGGDH--GP--EYLRPDPDLLAFVRDFY 96 (188)
T ss_pred HHHHHHHCCCeEEEEecCCCcceeecccCcceEecccccccCCHhHCCEEEECCCcc--ch--hhccCcHHHHHHHHHHH
Confidence 36788999987776654431 0001111 24899999999931 12 12222257889999999
Q ss_pred HcCCCccEEEechhhhHHHHH
Q psy12875 113 EEGVTFPVLGVCLGFELILQV 133 (308)
Q Consensus 113 ~~g~~~PvlGIC~G~Qll~~~ 133 (308)
+++ +||.+||.|-++|+.+
T Consensus 97 ~~~--k~vaaIC~g~~~L~~a 115 (188)
T COG0693 97 ANG--KPVAAICHGPAVLAAA 115 (188)
T ss_pred HcC--CEEEEEChhHHHHhcc
Confidence 955 9999999999999976
No 177
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=96.85 E-value=0.0012 Score=57.33 Aligned_cols=40 Identities=35% Similarity=0.616 Sum_probs=28.5
Q ss_pred eeeecCCCCcc----------hhhhHhh-hcCCCCeeeeehhHHHHHHHhC
Q psy12875 153 LKFLPGAKRSS----------LFSQINE-EGVTFPVLGVCLGFELILQVSN 192 (308)
Q Consensus 153 l~~~pg~~~~~----------~~~~i~~-~~~~~PilGiClG~Qll~~~~G 192 (308)
..+.||++.+. ....+++ ...++|+||||+|||+|+.+..
T Consensus 40 ~lilpG~g~~~~~~~~l~~~~~~~~i~~~~~~~~PvlGiC~G~Qll~~~~~ 90 (199)
T PRK13181 40 KVILPGVGAFGQAMRSLRESGLDEALKEHVEKKQPVLGICLGMQLLFESSE 90 (199)
T ss_pred EEEECCCCCHHHHHHHHHHCChHHHHHHHHHCCCCEEEECHhHHHhhhhcc
Confidence 44568987642 1233443 2568999999999999999865
No 178
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=96.81 E-value=0.00094 Score=58.03 Aligned_cols=29 Identities=31% Similarity=0.678 Sum_probs=23.5
Q ss_pred hhHhhh-cCCCCeeeeehhHHHHHHHhCCc
Q psy12875 166 SQINEE-GVTFPVLGVCLGFELILQVSNND 194 (308)
Q Consensus 166 ~~i~~~-~~~~PilGiClG~Qll~~~~G~~ 194 (308)
+.+++. ..++|+||||+|||+|+.++|+.
T Consensus 68 ~~i~~~~~~~~pilGIC~G~Qll~~~~gg~ 97 (200)
T PRK13527 68 DEIKEKIEEGLPILGTCAGLILLAKEVGDD 97 (200)
T ss_pred HHHHHHHHCCCeEEEECHHHHHHHhhhcCC
Confidence 344443 46899999999999999999984
No 179
>PRK11574 oxidative-stress-resistance chaperone; Provisional
Probab=96.80 E-value=0.014 Score=50.34 Aligned_cols=98 Identities=15% Similarity=0.210 Sum_probs=59.6
Q ss_pred CCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCC---------------hhHHHH-hcCCCC
Q psy12875 17 DTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQD---------------REYYAE-ILTQIN 80 (308)
Q Consensus 17 ~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~---------------~~~~~~-~l~~~d 80 (308)
|+|.|.|+..+.-. ...++ ..++.|+++|.++.......+ +..+++ ..+++|
T Consensus 1 ~~~~~~il~~~g~~----------~~e~~--~p~~~l~~ag~~v~~~s~~~~~~~~v~ss~G~~v~~d~~l~~~~~~~~D 68 (196)
T PRK11574 1 MSASALVCLAPGSE----------ETEAV--TTIDLLVRGGIKVTTASVASDGNLEITCSRGVKLLADAPLVEVADGDFD 68 (196)
T ss_pred CCceEEEEeCCCcc----------hhhHh--HHHHHHHHCCCeEEEEEccCCCCceEEcCCCCEEeCCCCHHHCCCCCCC
Confidence 46778888765432 11222 446788888877665543210 012222 124699
Q ss_pred EEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHH
Q psy12875 81 GVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQ 132 (308)
Q Consensus 81 GlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~ 132 (308)
.|++|||..... .....+.+.++++++.+++ ++|.+||.|..+|..
T Consensus 69 ~l~ipGG~~~~~----~~~~~~~l~~~L~~~~~~g--~~v~aic~G~~~ll~ 114 (196)
T PRK11574 69 VIVLPGGIKGAE----CFRDSPLLVETVRQFHRSG--RIVAAICAAPATVLV 114 (196)
T ss_pred EEEECCCCchhh----hhhhCHHHHHHHHHHHHCC--CEEEEECHhHHHHHH
Confidence 999999842111 1112235888898888855 999999999986543
No 180
>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity. Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....
Probab=96.79 E-value=0.0013 Score=54.08 Aligned_cols=52 Identities=21% Similarity=0.532 Sum_probs=37.0
Q ss_pred cCCCCEEEEcCCCCCCCCCCchhHH-HHHHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875 76 LTQINGVVIPGGGTGFDHPNGYADA-GRQILHLVDKINEEGVTFPVLGVCLGFELILQV 133 (308)
Q Consensus 76 l~~~dGlilpGG~~~~~~~~~~~~~-~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~ 133 (308)
.+.+|+|++|||.... .+.+. .+.+.++++++.+++ +||.+||.|..+|+.+
T Consensus 35 ~~~yDalilpGG~~~~----~~l~~~~~~l~~~~~~~~~~~--k~iaaIC~g~~~L~~~ 87 (147)
T PF01965_consen 35 PSDYDALILPGGHGGA----DDLRTDSKDLLELLKEFYEAG--KPIAAICHGPAVLAAA 87 (147)
T ss_dssp GGGESEEEEE-BTHHH----HHHTTCHHHHHHHHHHHHHTT---EEEEETTCHHHHHHT
T ss_pred hhhCCEEEECCCCchh----hhHhhHHHHHHHHHHHHHHcC--CeEEecCCCcchhhcc
Confidence 4579999999995211 12221 257888999999854 9999999999888866
No 181
>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=96.78 E-value=0.0019 Score=54.90 Aligned_cols=49 Identities=27% Similarity=0.552 Sum_probs=36.9
Q ss_pred CCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875 78 QINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQV 133 (308)
Q Consensus 78 ~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~ 133 (308)
.+|+|++|||.. . .+......+.++++++.+++ +||.|||.|.++|+.+
T Consensus 76 ~~D~liv~GG~~-~----~~~~~~~~~~~~l~~~~~~~--k~i~~ic~G~~~La~a 124 (180)
T cd03169 76 DYDALVIPGGRA-P----EYLRLDEKVLAIVRHFAEAN--KPVAAICHGPQILAAA 124 (180)
T ss_pred HCCEEEEcCCCC-h----hhhccCHHHHHHHHHHHHcC--CEEEEECcHHHHHHHc
Confidence 689999999952 1 11111246778888888854 9999999999999976
No 182
>PLN02327 CTP synthase
Probab=96.74 E-value=0.0011 Score=65.34 Aligned_cols=48 Identities=15% Similarity=0.164 Sum_probs=34.6
Q ss_pred cceeeecCCCCcch---hhhHhhh-cCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875 151 LNLKFLPGAKRSSL---FSQINEE-GVTFPVLGVCLGFELILQVSNNDTDFR 198 (308)
Q Consensus 151 ~~l~~~pg~~~~~~---~~~i~~~-~~~~PilGiClG~Qll~~~~G~~v~~~ 198 (308)
.++.+.+|++.+.. ...++.. ..++|+||||+|||++..++++++--.
T Consensus 364 DGIvvpGGfG~~~~~G~i~ai~~are~~iP~LGIClGmQl~viefaRnvlG~ 415 (557)
T PLN02327 364 DGILVPGGFGDRGVEGKILAAKYARENKVPYLGICLGMQIAVIEFARSVLGL 415 (557)
T ss_pred CEEEeCCCCCCcccccHHHHHHHHHHcCCCEEEEcHHHHHHHHHHHHhhcCC
Confidence 35677777766542 3334433 468999999999999999999887553
No 183
>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different
Probab=96.69 E-value=0.0042 Score=54.87 Aligned_cols=53 Identities=25% Similarity=0.403 Sum_probs=39.1
Q ss_pred cCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHHh
Q psy12875 76 LTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQVS 134 (308)
Q Consensus 76 l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~~ 134 (308)
++++|+|++|||...... ....+.+.++++++.+++ ++|.+||.|-.+|+.+.
T Consensus 88 ~~~~dal~ipGG~~~~~~----l~~~~~l~~~l~~~~~~~--k~iaaIC~g~~~La~ag 140 (221)
T cd03141 88 PSDYDAIFIPGGHGPMFD----LPDNPDLQDLLREFYENG--KVVAAVCHGPAALLNVK 140 (221)
T ss_pred HhHceEEEECCCcccccc----cccCHHHHHHHHHHHHcC--CEEEEEcchHHHHHhcc
Confidence 347899999998521111 112346888898888854 89999999999999773
No 184
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=96.66 E-value=0.0014 Score=56.49 Aligned_cols=28 Identities=25% Similarity=0.481 Sum_probs=23.3
Q ss_pred hHhhh-cCCCCeeeeehhHHHHHHHhCCc
Q psy12875 167 QINEE-GVTFPVLGVCLGFELILQVSNND 194 (308)
Q Consensus 167 ~i~~~-~~~~PilGiClG~Qll~~~~G~~ 194 (308)
.+++. ..++|++|||+|+|+|+.++|+.
T Consensus 64 ~i~~~~~~g~PilGIC~G~QlL~~~~gg~ 92 (189)
T PRK13525 64 PLREFIASGLPVFGTCAGMILLAKEIEGY 92 (189)
T ss_pred HHHHHHHCCCeEEEECHHHHHHHhhcccC
Confidence 44443 56899999999999999999986
No 185
>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=96.65 E-value=0.0013 Score=60.12 Aligned_cols=24 Identities=46% Similarity=0.920 Sum_probs=21.3
Q ss_pred CCCeeeeehhHHHHHHHhCCcccc
Q psy12875 174 TFPVLGVCLGFELILQVSNNDTDF 197 (308)
Q Consensus 174 ~~PilGiClG~Qll~~~~G~~v~~ 197 (308)
.+|++|+|+|+|+|+.++|+++..
T Consensus 92 ~~Pv~GiClG~QlL~~~~gg~~~~ 115 (273)
T cd01747 92 YFPVWGTCLGFELLTYLTSGETLL 115 (273)
T ss_pred CCcEEEEcHHHHHHHHHhCCCccc
Confidence 489999999999999999987543
No 186
>PRK08250 glutamine amidotransferase; Provisional
Probab=96.64 E-value=0.0019 Score=57.63 Aligned_cols=32 Identities=31% Similarity=0.469 Sum_probs=27.1
Q ss_pred hHhhh-cCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875 167 QINEE-GVTFPVLGVCLGFELILQVSNNDTDFR 198 (308)
Q Consensus 167 ~i~~~-~~~~PilGiClG~Qll~~~~G~~v~~~ 198 (308)
.|++. ..++|+||||+|||+|+.++||+|.+.
T Consensus 76 ~i~~~~~~~~PvlGIC~G~Qlla~alGg~V~~~ 108 (235)
T PRK08250 76 LINQAIKAGKAVIGVCLGAQLIGEALGAKYEHS 108 (235)
T ss_pred HHHHHHHcCCCEEEEChhHHHHHHHhCceeccC
Confidence 34443 568999999999999999999999775
No 187
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=96.58 E-value=0.0058 Score=49.80 Aligned_cols=80 Identities=25% Similarity=0.309 Sum_probs=53.6
Q ss_pred HHHHHHHHcCCeEEEEEcCCCh------------hHHHH-hcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHc
Q psy12875 48 SYVKNIEAAGARVVPILIGQDR------------EYYAE-ILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEE 114 (308)
Q Consensus 48 ~~~~~l~~aG~~~~~i~~~~~~------------~~~~~-~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~ 114 (308)
...+.++.+|.++..+...... ..++. ....+|+|++|||..... .....+.+.++++++.++
T Consensus 19 ~~~~~~~~a~~~v~vvs~~~~~v~s~~g~~i~~~~~l~~~~~~~~D~liVpGg~~~~~----~~~~~~~l~~~l~~~~~~ 94 (142)
T cd03132 19 ALKAALKAAGANVKVVAPTLGGVVDSDGKTLEVDQTYAGAPSVLFDAVVVPGGAEAAF----ALAPSGRALHFVTEAFKH 94 (142)
T ss_pred HHHHHHHHCCCEEEEEecCcCceecCCCcEEecceeecCCChhhcCEEEECCCccCHH----HHccChHHHHHHHHHHhc
Confidence 5578888999998877643221 01111 122589999999852110 112234688888888885
Q ss_pred CCCccEEEechhhhHHHHH
Q psy12875 115 GVTFPVLGVCLGFELILQV 133 (308)
Q Consensus 115 g~~~PvlGIC~G~Qll~~~ 133 (308)
+ +||.+||.|-.+|+.+
T Consensus 95 ~--~~I~aic~G~~~La~a 111 (142)
T cd03132 95 G--KPIGAVGEGSDLLEAA 111 (142)
T ss_pred C--CeEEEcCchHHHHHHc
Confidence 4 9999999999999976
No 188
>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.
Probab=96.56 E-value=0.0018 Score=55.45 Aligned_cols=29 Identities=24% Similarity=0.481 Sum_probs=23.6
Q ss_pred hhHhhh-cCCCCeeeeehhHHHHHHHhCCc
Q psy12875 166 SQINEE-GVTFPVLGVCLGFELILQVSNND 194 (308)
Q Consensus 166 ~~i~~~-~~~~PilGiClG~Qll~~~~G~~ 194 (308)
..+++. ...+|++|||+|||+|+.++++.
T Consensus 60 ~~i~~~~~~g~PvlGiC~G~qlL~~~~~~~ 89 (183)
T cd01749 60 DPLREFIRAGKPVFGTCAGLILLAKEVEDQ 89 (183)
T ss_pred HHHHHHHHcCCeEEEECHHHHHHHHHhccc
Confidence 344543 56899999999999999999876
No 189
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=96.46 E-value=0.0097 Score=57.01 Aligned_cols=79 Identities=18% Similarity=0.286 Sum_probs=57.1
Q ss_pred chHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHH---HHHHHHHHHHHHcCCCccE
Q psy12875 44 YIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAG---RQILHLVDKINEEGVTFPV 120 (308)
Q Consensus 44 ~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~---~~~~e~~~~~~~~g~~~Pv 120 (308)
|-.+...+.|+++|+++++...-.+.+ ...++|+|+|+||- |+ .|.+.. +...+.++++.++| +||
T Consensus 258 FyY~~nl~~Lr~~GAelv~FSPL~D~~----lP~~~D~vYlgGGY----PE-lfA~~L~~n~~~~~~i~~~~~~G--~pi 326 (451)
T COG1797 258 FYYPENLELLREAGAELVFFSPLADEE----LPPDVDAVYLGGGY----PE-LFAEELSANESMRRAIKAFAAAG--KPI 326 (451)
T ss_pred cccHHHHHHHHHCCCEEEEeCCcCCCC----CCCCCCEEEeCCCC----hH-HHHHHHhhCHHHHHHHHHHHHcC--Cce
Confidence 334566899999999999887655543 33369999999993 32 232221 24566778888855 999
Q ss_pred EEechhhhHHHHH
Q psy12875 121 LGVCLGFELILQV 133 (308)
Q Consensus 121 lGIC~G~Qll~~~ 133 (308)
+|=|-|+--|...
T Consensus 327 yaECGGlMYL~~~ 339 (451)
T COG1797 327 YAECGGLMYLGES 339 (451)
T ss_pred EEecccceeehhh
Confidence 9999999888876
No 190
>cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=96.44 E-value=0.0095 Score=50.74 Aligned_cols=52 Identities=23% Similarity=0.385 Sum_probs=39.1
Q ss_pred hcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875 75 ILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQV 133 (308)
Q Consensus 75 ~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~ 133 (308)
...++|.|++|||... . .....+.+.++++++.+++ ++|.+||.|.++|+.+
T Consensus 61 ~~~~~D~liipGg~~~-~----~~~~~~~l~~~l~~~~~~~--~~i~aic~g~~~La~a 112 (187)
T cd03137 61 ALAAADTVIVPGGPDV-D----GRPPPPALLAALRRAAARG--ARVASVCTGAFVLAEA 112 (187)
T ss_pred ccCCCCEEEECCCccc-c----cccCCHHHHHHHHHHHhcC--CEEEEECHHHHHHHHc
Confidence 3567999999998531 1 1122356888888888754 8999999999999977
No 191
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=96.40 E-value=0.0026 Score=55.10 Aligned_cols=38 Identities=34% Similarity=0.692 Sum_probs=26.8
Q ss_pred eeecCCCCcc----------hhhhHhhh-cCCCCeeeeehhHHHHHHHh
Q psy12875 154 KFLPGAKRSS----------LFSQINEE-GVTFPVLGVCLGFELILQVS 191 (308)
Q Consensus 154 ~~~pg~~~~~----------~~~~i~~~-~~~~PilGiClG~Qll~~~~ 191 (308)
.+.||++.+. ....+++. ..++|+||||+|||+|+.++
T Consensus 40 iiipG~~~~~~~~~~~~~~~~~~~i~~~~~~~~pilGiC~G~q~l~~~~ 88 (198)
T cd01748 40 LILPGVGAFGDAMANLRERGLIEALKEAIASGKPFLGICLGMQLLFESS 88 (198)
T ss_pred EEECCCCcHHHHHHHHHHcChHHHHHHHHHCCCcEEEECHHHHHhcccc
Confidence 3448876543 23344443 46899999999999999984
No 192
>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]
Probab=96.40 E-value=0.0063 Score=59.14 Aligned_cols=52 Identities=17% Similarity=0.305 Sum_probs=34.7
Q ss_pred cCCCCEEEEcCCCCCCCCCCchhHHHH--HHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875 76 LTQINGVVIPGGGTGFDHPNGYADAGR--QILHLVDKINEEGVTFPVLGVCLGFELILQV 133 (308)
Q Consensus 76 l~~~dGlilpGG~~~~~~~~~~~~~~~--~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~ 133 (308)
+.++|.+||||.-+... ..++.| .+-+.+.+..++ +.||+|||-|||+|...
T Consensus 288 l~~~dlvIlPGsk~t~~----DL~~lr~~g~d~~i~~~~~~--~~~viGICGG~QmLG~~ 341 (486)
T COG1492 288 LRDADLVILPGSKNTIA----DLKILREGGMDEKILEYARK--GGDVIGICGGYQMLGRR 341 (486)
T ss_pred CCCCCEEEeCCCcccHH----HHHHHHHcCHHHHHHHHHhC--CCCEEEEcchHHhhhhh
Confidence 56789999999864221 122222 333445555553 48999999999999977
No 193
>PRK06186 hypothetical protein; Validated
Probab=96.38 E-value=0.0033 Score=55.71 Aligned_cols=45 Identities=22% Similarity=0.361 Sum_probs=31.4
Q ss_pred ceeeecCCCCcc---hhhhHhhh-cCCCCeeeeehhHHHHHHHhCCccc
Q psy12875 152 NLKFLPGAKRSS---LFSQINEE-GVTFPVLGVCLGFELILQVSNNDTD 196 (308)
Q Consensus 152 ~l~~~pg~~~~~---~~~~i~~~-~~~~PilGiClG~Qll~~~~G~~v~ 196 (308)
++.+-||-+... -+..++.. ..++|+||||+|||++...++.++.
T Consensus 56 gilvpgGfg~rg~~Gki~ai~~Are~~iP~LGIClGmQ~avIe~arnv~ 104 (229)
T PRK06186 56 GIWCVPGSPYRNDDGALTAIRFARENGIPFLGTCGGFQHALLEYARNVL 104 (229)
T ss_pred eeEeCCCCCcccHhHHHHHHHHHHHcCCCeEeechhhHHHHHHHHhhhc
Confidence 455666666544 34455553 5799999999999987777766653
No 194
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=96.33 E-value=0.0028 Score=54.58 Aligned_cols=38 Identities=32% Similarity=0.596 Sum_probs=25.0
Q ss_pred eeeecCCCCcc-hhh---------hHhh-hcCCCCeeeeehhHHHHHHH
Q psy12875 153 LKFLPGAKRSS-LFS---------QINE-EGVTFPVLGVCLGFELILQV 190 (308)
Q Consensus 153 l~~~pg~~~~~-~~~---------~i~~-~~~~~PilGiClG~Qll~~~ 190 (308)
-.+.||-+.=. .++ .+++ ...++|+||||+|||||...
T Consensus 42 ~liLPGVGaf~~am~~L~~~gl~~~i~~~~~~~kP~LGIClGMQlLfe~ 90 (204)
T COG0118 42 KLILPGVGAFGAAMANLRERGLIEAIKEAVESGKPFLGICLGMQLLFER 90 (204)
T ss_pred EEEecCCCCHHHHHHHHHhcchHHHHHHHHhcCCCEEEEeHhHHhhhhc
Confidence 44568887622 222 3332 13468999999999999984
No 195
>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit. This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.
Probab=96.29 E-value=0.0039 Score=53.99 Aligned_cols=20 Identities=45% Similarity=0.953 Sum_probs=18.3
Q ss_pred cCCCCeeeeehhHHHHHHHh
Q psy12875 172 GVTFPVLGVCLGFELILQVS 191 (308)
Q Consensus 172 ~~~~PilGiClG~Qll~~~~ 191 (308)
..++|+||||+|||+|+.++
T Consensus 69 ~~~~pvlGiC~G~Qll~~~~ 88 (196)
T TIGR01855 69 RLGKPVLGICLGMQLLFERS 88 (196)
T ss_pred hCCCCEEEECHHHHHhhhcc
Confidence 56899999999999999985
No 196
>COG1897 MetA Homoserine trans-succinylase [Amino acid transport and metabolism]
Probab=96.25 E-value=0.016 Score=51.53 Aligned_cols=67 Identities=21% Similarity=0.229 Sum_probs=42.2
Q ss_pred CCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEecCCCEEEEeecCCccC
Q psy12875 217 KRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNA 296 (308)
Q Consensus 217 ~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~~~p~~GvQFHPE~~~ 296 (308)
..+.++.|+.+.+.+ -.+.|.+ +....+. --+++++++.|+..+ +..+..++.+-.=+-.|||...
T Consensus 175 p~~~l~rGfdd~f~~-------PhSR~t~-~~~e~i~---~~~~LeIL~es~e~G---~~l~a~k~~r~ifv~gH~EYD~ 240 (307)
T COG1897 175 PHSLLTRGFDDSFLA-------PHSRYTD-VPKEDIL---AVPDLEILAESKEAG---VYLLASKDGRNIFVTGHPEYDA 240 (307)
T ss_pred ccchhhccCCccccC-------ccccccc-CCHHHHh---hCCCceeeecccccc---eEEEecCCCCeEEEeCCcchhh
Confidence 467889998887643 1222332 3332221 235699999998777 5566666655555778999985
Q ss_pred c
Q psy12875 297 Y 297 (308)
Q Consensus 297 ~ 297 (308)
+
T Consensus 241 ~ 241 (307)
T COG1897 241 T 241 (307)
T ss_pred h
Confidence 4
No 197
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=96.24 E-value=0.0052 Score=52.59 Aligned_cols=48 Identities=27% Similarity=0.442 Sum_probs=34.6
Q ss_pred ceeeecCCCCc-c--------hhhhHhhh-cCCCCeeeeehhHHHHHHHhCCcccccC
Q psy12875 152 NLKFLPGAKRS-S--------LFSQINEE-GVTFPVLGVCLGFELILQVSNNDTDFRK 199 (308)
Q Consensus 152 ~l~~~pg~~~~-~--------~~~~i~~~-~~~~PilGiClG~Qll~~~~G~~v~~~~ 199 (308)
.+.+..|+..+ . ....++.. ..++|++|||+|||+|+.++||++.+.+
T Consensus 49 gvil~Gg~~~~~~~~~~~~~~~~~~i~~~~~~~~pilgiC~G~q~l~~~lGG~v~~~~ 106 (188)
T cd01741 49 GLVILGGPMSVDEDDYPWLKKLKELIRQALAAGKPVLGICLGHQLLARALGGKVGRNP 106 (188)
T ss_pred EEEECCCCccCCccCChHHHHHHHHHHHHHHCCCCEEEECccHHHHHHHhCCEEecCC
Confidence 46666666654 1 12233332 5679999999999999999999998753
No 198
>COG3442 Predicted glutamine amidotransferase [General function prediction only]
Probab=96.23 E-value=0.0098 Score=51.76 Aligned_cols=72 Identities=21% Similarity=0.323 Sum_probs=46.5
Q ss_pred HHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHH--HHH---HHHHHHHHHHcCCCccEEEec
Q psy12875 50 VKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADA--GRQ---ILHLVDKINEEGVTFPVLGVC 124 (308)
Q Consensus 50 ~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~--~~~---~~e~~~~~~~~g~~~PvlGIC 124 (308)
....+..|..+.+.+++..+. ++ .+.+|-+++-||. +|.+. .++ ..+-++++++. ++|+++||
T Consensus 27 r~ra~~rgi~v~i~~vsl~d~-~~--~~~~Dl~~~GGgq-------D~eQ~i~t~d~~~k~~~l~~~i~~--g~p~laiC 94 (250)
T COG3442 27 RQRAEKRGIKVEIVEVSLTDT-FP--DDSYDLYFLGGGQ-------DYEQEIATRDLLTKKEGLKDAIEN--GKPVLAIC 94 (250)
T ss_pred hHHHHhcCCceEEEEeecCCC-CC--cccccEEEecCch-------HHHHHHHhhhhccccHHHHHHHhc--CCcEEEEc
Confidence 345566787777666654332 11 2467877666664 35443 233 23446778884 49999999
Q ss_pred hhhhHHHHH
Q psy12875 125 LGFELILQV 133 (308)
Q Consensus 125 ~G~Qll~~~ 133 (308)
-|+|+|...
T Consensus 95 gg~QlLG~y 103 (250)
T COG3442 95 GGYQLLGQY 103 (250)
T ss_pred cchhhccce
Confidence 999999987
No 199
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=95.87 E-value=0.064 Score=48.32 Aligned_cols=99 Identities=16% Similarity=0.246 Sum_probs=65.6
Q ss_pred CCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCe-EEEEEcCC----ChhHHHHhcCCCCEEEEcCCCCCC
Q psy12875 17 DTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGAR-VVPILIGQ----DREYYAEILTQINGVVIPGGGTGF 91 (308)
Q Consensus 17 ~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~-~~~i~~~~----~~~~~~~~l~~~dGlilpGG~~~~ 91 (308)
..|.|.+.+.-+.. ...| .+.|.+++++.|+. +.++.+.. ++.+..+.+.++|+|++.||...
T Consensus 27 ~~~rI~~iptAS~~----------~~~~-~~~~~~~~~~lG~~~v~~l~i~~r~~a~~~~~~~~l~~ad~I~~~GGnq~- 94 (250)
T TIGR02069 27 EDAIIVIITSASEE----------PREV-GERYITIFSRLGVKEVKILDVREREDASDENAIALLSNATGIFFTGGDQL- 94 (250)
T ss_pred CCceEEEEeCCCCC----------hHHH-HHHHHHHHHHcCCceeEEEecCChHHccCHHHHHHHhhCCEEEEeCCCHH-
Confidence 35889988764432 1234 35788999999984 56666532 12234456889999999999520
Q ss_pred CCCCchhHHHH--HHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875 92 DHPNGYADAGR--QILHLVDKINEEGVTFPVLGVCLGFELILQV 133 (308)
Q Consensus 92 ~~~~~~~~~~~--~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~ 133 (308)
.+.+..+ .+.+.+++++++| .|+.|+-.|.-+|...
T Consensus 95 ----~l~~~l~~t~l~~~l~~~~~~G--~vi~G~SAGA~i~~~~ 132 (250)
T TIGR02069 95 ----RITSLLGDTPLLDRLRKRVHEG--IILGGTSAGAAVMSDT 132 (250)
T ss_pred ----HHHHHHcCCcHHHHHHHHHHcC--CeEEEccHHHHhcccc
Confidence 1222212 4566778888855 9999999999877643
No 200
>cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=95.86 E-value=0.011 Score=49.81 Aligned_cols=49 Identities=20% Similarity=0.443 Sum_probs=37.7
Q ss_pred CCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875 77 TQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQV 133 (308)
Q Consensus 77 ~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~ 133 (308)
.++|.|++|||.. .. +. ..+.+.++++++.+++ ++|.+||.|.++|+.+
T Consensus 59 ~~~D~l~I~Gg~~-~~----~~-~~~~l~~~l~~~~~~~--~~i~aic~G~~~La~a 107 (170)
T cd03140 59 EDYDLLILPGGDS-WD----NP-EAPDLAGLVRQALKQG--KPVAAICGATLALARA 107 (170)
T ss_pred hHccEEEEcCCcc-cc----cC-CcHHHHHHHHHHHHcC--CEEEEEChHHHHHHHC
Confidence 4789999999962 11 11 2346788888888854 8999999999999987
No 201
>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.
Probab=95.85 E-value=0.007 Score=51.96 Aligned_cols=100 Identities=17% Similarity=0.165 Sum_probs=60.3
Q ss_pred hHhhh-cCCCCeeeeehhHHHHHHHhCC-----------cccccCCcccceeeecccccCCCCCCcCccCCC-hhHHHhh
Q psy12875 167 QINEE-GVTFPVLGVCLGFELILQVSNN-----------DTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQVP-SKYIKKF 233 (308)
Q Consensus 167 ~i~~~-~~~~PilGiClG~Qll~~~~G~-----------~v~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~ 233 (308)
.|++. ..++|++|||+|||+|++.+.. ++.+...|. .+... ......++.. .++.
T Consensus 62 ~i~~~~~~g~pilGIC~G~qlL~~~~~~~~~~~lg~~~~~v~~~~~g~--~~~s~-------~~~l~~~~~~~~~~~--- 129 (184)
T TIGR03800 62 PLRNFILSGLPVFGTCAGLIMLAKEIIGQKEGYLGLLDMTVERNAYGR--QVDSF-------EAEVDIKGVGDDPIT--- 129 (184)
T ss_pred HHHHHHHcCCcEEEECHHHHHHHhhhccCCCCccCcEEEEEEeeccCC--ccccE-------EEEeecccCCCCcce---
Confidence 44443 5689999999999999999732 332221111 00000 0000011111 0121
Q ss_pred ccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEecCCCEEEEeecCCccC
Q psy12875 234 YQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNA 296 (308)
Q Consensus 234 ~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~~~p~~GvQFHPE~~~ 296 (308)
..+.|...|.. +|++++++|+++++ +.|++.+ ++||+|||||++.
T Consensus 130 -----~~~~h~~~v~~-------lp~~~~vla~~~~~----~~a~~~~--~~~gvQfHPE~~~ 174 (184)
T TIGR03800 130 -----GVFIRAPKIVS-------VGNGVEILAKVGNR----IVAVRQG--NILVSSFHPELTD 174 (184)
T ss_pred -----EEEEcCCCccc-------CCCCeEEEEEeCCe----eEEEEeC--CEEEEEeCCccCC
Confidence 24678877763 89999999997664 4477655 5999999999873
No 202
>PRK11249 katE hydroperoxidase II; Provisional
Probab=95.72 E-value=0.034 Score=57.29 Aligned_cols=99 Identities=12% Similarity=0.109 Sum_probs=63.4
Q ss_pred CCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCCh-----h---HHHHhc-----CCCCEEE
Q psy12875 17 DTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDR-----E---YYAEIL-----TQINGVV 83 (308)
Q Consensus 17 ~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~-----~---~~~~~l-----~~~dGli 83 (308)
..-.|||+...... ...+ ..+.++|+++|+.+.++...... . ..+..+ ..+|+|+
T Consensus 596 ~gRKIaILVaDG~d----------~~ev--~~~~daL~~AGa~V~VVSp~~G~V~~s~G~~I~aD~t~~~~~Sv~FDAVv 663 (752)
T PRK11249 596 KGRKVAILLNDGVD----------AADL--LAILKALKAKGVHAKLLYPRMGEVTADDGTVLPIAATFAGAPSLTFDAVI 663 (752)
T ss_pred cccEEEEEecCCCC----------HHHH--HHHHHHHHHCCCEEEEEECCCCeEECCCCCEEecceeeccCCccCCCEEE
Confidence 44568887765332 1112 35678999999988887542210 0 011112 2589999
Q ss_pred EcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875 84 IPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQV 133 (308)
Q Consensus 84 lpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~ 133 (308)
+|||..... .......+.++++++++++ ++|.+||.|.++|+.+
T Consensus 664 VPGG~~~~~----~L~~d~~al~fL~eaykHg--K~IAAiCaG~~LLaaA 707 (752)
T PRK11249 664 VPGGKANIA----DLADNGDARYYLLEAYKHL--KPIALAGDARKLKAAL 707 (752)
T ss_pred ECCCchhHH----HHhhCHHHHHHHHHHHHcC--CEEEEeCccHHHHHhc
Confidence 999852111 1112236889999999855 9999999999999976
No 203
>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=95.69 E-value=0.0071 Score=52.65 Aligned_cols=26 Identities=38% Similarity=0.800 Sum_probs=20.7
Q ss_pred hhHhhh-cCCCCeeeeehhHHHHHHHh
Q psy12875 166 SQINEE-GVTFPVLGVCLGFELILQVS 191 (308)
Q Consensus 166 ~~i~~~-~~~~PilGiClG~Qll~~~~ 191 (308)
..+++. ..++|+||||+|||+|+...
T Consensus 63 ~~i~~~~~~~~pvlGIC~G~Qll~~~~ 89 (205)
T PRK13141 63 EVIKEAVASGKPLLGICLGMQLLFESS 89 (205)
T ss_pred HHHHHHHHCCCcEEEECHHHHHhhhcc
Confidence 344443 46899999999999999975
No 204
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=95.67 E-value=0.019 Score=47.71 Aligned_cols=77 Identities=13% Similarity=0.210 Sum_probs=52.9
Q ss_pred HHHHHHHHHcCCeEEEEEcCCC-hhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHH--HHHHHHHHHHHcCCCccEEEe
Q psy12875 47 ASYVKNIEAAGARVVPILIGQD-REYYAEILTQINGVVIPGGGTGFDHPNGYADAGR--QILHLVDKINEEGVTFPVLGV 123 (308)
Q Consensus 47 ~~~~~~l~~aG~~~~~i~~~~~-~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~--~~~e~~~~~~~~g~~~PvlGI 123 (308)
+.+.+++++.|+++..+..... .++..+.+.++|+|++.||.. . .+.+..+ .+.+.+++++++| .++.|+
T Consensus 3 ~~~~~~f~~~g~~v~~l~~~~~~~~~~~~~i~~ad~I~~~GG~~--~---~l~~~l~~t~l~~~i~~~~~~G--~vi~G~ 75 (154)
T PF03575_consen 3 EKFRKAFRKLGFEVDQLDLSDRNDADILEAIREADAIFLGGGDT--F---RLLRQLKETGLDEAIREAYRKG--GVIIGT 75 (154)
T ss_dssp HHHHHHHHHCT-EEEECCCTSCGHHHHHHHHHHSSEEEE--S-H--H---HHHHHHHHTTHHHHHHHHHHTT--SEEEEE
T ss_pred HHHHHHHHHCCCEEEEEeccCCChHHHHHHHHhCCEEEECCCCH--H---HHHHHHHhCCHHHHHHHHHHCC--CEEEEE
Confidence 4678999999999888876653 335556778999999999941 1 1223222 4677788888865 999999
Q ss_pred chhhhHH
Q psy12875 124 CLGFELI 130 (308)
Q Consensus 124 C~G~Qll 130 (308)
-.|.-++
T Consensus 76 SAGA~i~ 82 (154)
T PF03575_consen 76 SAGAMIL 82 (154)
T ss_dssp THHHHCT
T ss_pred ChHHhhc
Confidence 9998554
No 205
>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly
Probab=95.67 E-value=0.019 Score=47.58 Aligned_cols=80 Identities=19% Similarity=0.370 Sum_probs=52.0
Q ss_pred HHHHHHHHcCCeEEEEEcCCCh-------------hHHHH-hcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHH
Q psy12875 48 SYVKNIEAAGARVVPILIGQDR-------------EYYAE-ILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINE 113 (308)
Q Consensus 48 ~~~~~l~~aG~~~~~i~~~~~~-------------~~~~~-~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~ 113 (308)
...+.++.+|.++..+...... ..+++ ...++|.|++|||.... ......+.+.++++++.+
T Consensus 16 ~~~~~~~~a~~~v~~vs~~~~~~~~~~~g~~v~~~~~~~~~~~~~~D~liipGg~~~~----~~~~~~~~l~~~l~~~~~ 91 (163)
T cd03135 16 TPVDVLRRAGIEVTTASLEKKLAVGSSHGIKVKADKTLSDVNLDDYDAIVIPGGLPGA----QNLADNEKLIKLLKEFNA 91 (163)
T ss_pred HHHHHHHHCCCEEEEEEcCCCceEeccCCCEEEecCCHhHcCCCCCCEEEECCCCchH----HHHHhCHHHHHHHHHHHH
Confidence 4467777788777665432110 01222 23679999999985111 011123467888888888
Q ss_pred cCCCccEEEechhhhHHHHH
Q psy12875 114 EGVTFPVLGVCLGFELILQV 133 (308)
Q Consensus 114 ~g~~~PvlGIC~G~Qll~~~ 133 (308)
++ ++|.+||.|..+|+.+
T Consensus 92 ~~--~~i~~ic~g~~~La~a 109 (163)
T cd03135 92 KG--KLIAAICAAPAVLAKA 109 (163)
T ss_pred cC--CEEEEEchhHHHHHHc
Confidence 54 8999999999999976
No 206
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=95.52 E-value=0.0074 Score=52.86 Aligned_cols=19 Identities=32% Similarity=0.866 Sum_probs=17.5
Q ss_pred cCCCCeeeeehhHHHHHHH
Q psy12875 172 GVTFPVLGVCLGFELILQV 190 (308)
Q Consensus 172 ~~~~PilGiClG~Qll~~~ 190 (308)
..++|+||||+|||+|+.+
T Consensus 75 ~~~~PvlGiC~G~q~l~~~ 93 (209)
T PRK13146 75 AAGRPFLGICVGMQLLFER 93 (209)
T ss_pred hCCCcEEEECHHHHHHhhc
Confidence 3689999999999999997
No 207
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=95.46 E-value=0.012 Score=51.18 Aligned_cols=20 Identities=40% Similarity=0.868 Sum_probs=18.0
Q ss_pred cCCCCeeeeehhHHHHHHHh
Q psy12875 172 GVTFPVLGVCLGFELILQVS 191 (308)
Q Consensus 172 ~~~~PilGiClG~Qll~~~~ 191 (308)
..++|+||||+|||+|+.++
T Consensus 69 ~~~~PilgIC~G~q~l~~~~ 88 (200)
T PRK13143 69 RSGKPFLGICLGMQLLFESS 88 (200)
T ss_pred HcCCCEEEECHHHHHHhhhh
Confidence 56799999999999999875
No 208
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=95.46 E-value=0.015 Score=58.08 Aligned_cols=39 Identities=28% Similarity=0.564 Sum_probs=27.0
Q ss_pred eeeecCCCCcc----------hhhhHhhh-cCCCCeeeeehhHHHHHHHh
Q psy12875 153 LKFLPGAKRSS----------LFSQINEE-GVTFPVLGVCLGFELILQVS 191 (308)
Q Consensus 153 l~~~pg~~~~~----------~~~~i~~~-~~~~PilGiClG~Qll~~~~ 191 (308)
..+.||.+.+. +...+++. ...+|+||||+|||+|+.++
T Consensus 47 ~lIlpG~gs~~~~m~~L~~~gl~~~i~~~i~~g~PvLGIC~G~QlLa~~~ 96 (538)
T PLN02617 47 RLIFPGVGAFGSAMDVLNNRGMAEALREYIQNDRPFLGICLGLQLLFESS 96 (538)
T ss_pred EEEECCCCCHHHHHHHHHHcCHHHHHHHHHHcCCCEEEECHHHHHHhhhh
Confidence 44558876643 12234432 46899999999999999975
No 209
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=95.42 E-value=0.095 Score=46.13 Aligned_cols=98 Identities=18% Similarity=0.257 Sum_probs=65.6
Q ss_pred CCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCe-EEEEEcCC----ChhHHHHhcCCCCEEEEcCCCCCCC
Q psy12875 18 TPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGAR-VVPILIGQ----DREYYAEILTQINGVVIPGGGTGFD 92 (308)
Q Consensus 18 ~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~-~~~i~~~~----~~~~~~~~l~~~dGlilpGG~~~~~ 92 (308)
.|.|.++...... .+.+ .+.|.+++++.|+. +..+.... ++.++.+.+.++|+|++.||.. .
T Consensus 29 ~~~i~~iptA~~~----------~~~~-~~~~~~~~~~lG~~~v~~~~~~~~~~a~~~~~~~~l~~ad~I~~~GG~~--~ 95 (217)
T cd03145 29 GARIVVIPAASEE----------PAEV-GEEYRDVFERLGAREVEVLVIDSREAANDPEVVARLRDADGIFFTGGDQ--L 95 (217)
T ss_pred CCcEEEEeCCCcC----------hhHH-HHHHHHHHHHcCCceeEEeccCChHHcCCHHHHHHHHhCCEEEEeCCcH--H
Confidence 5888888776542 1234 35788899999985 44444431 2334555788999999999952 1
Q ss_pred CCCchhHHHH--HHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875 93 HPNGYADAGR--QILHLVDKINEEGVTFPVLGVCLGFELILQV 133 (308)
Q Consensus 93 ~~~~~~~~~~--~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~ 133 (308)
.+.+..+ .+.+.+++++++| .|+.|+-.|.-++...
T Consensus 96 ---~~~~~l~~t~l~~~l~~~~~~G--~v~~G~SAGA~i~~~~ 133 (217)
T cd03145 96 ---RITSALGGTPLLDALRKVYRGG--VVIGGTSAGAAVMSDT 133 (217)
T ss_pred ---HHHHHHcCChHHHHHHHHHHcC--CEEEEccHHHHhhhhc
Confidence 1333222 4667778888855 9999999999887754
No 210
>cd03138 GATase1_AraC_2 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=95.42 E-value=0.032 Score=47.85 Aligned_cols=54 Identities=19% Similarity=0.325 Sum_probs=38.9
Q ss_pred cCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875 76 LTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQV 133 (308)
Q Consensus 76 l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~ 133 (308)
..++|.|++|||...... ........+.++++++.+++ ++|.+||.|..+|+.+
T Consensus 67 ~~~~D~liIpgg~~~~~~--~~~~~~~~l~~~l~~~~~~~--~~i~aic~G~~~La~a 120 (195)
T cd03138 67 VPAPDLVIVPGLGGDPDE--LLLADNPALIAWLRRQHANG--ATVAAACTGVFLLAEA 120 (195)
T ss_pred cCCCCEEEECCCcCCchh--hhhhccHHHHHHHHHHHHcC--CEEEEecHHHHHHHHc
Confidence 467999999998532110 01222346888888888854 8999999999999976
No 211
>cd03139 GATase1_PfpI_2 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=95.41 E-value=0.039 Score=46.67 Aligned_cols=78 Identities=17% Similarity=0.196 Sum_probs=50.4
Q ss_pred HHHHHHHHcC-----CeEEEEEcCCCh------------hHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHH
Q psy12875 48 SYVKNIEAAG-----ARVVPILIGQDR------------EYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDK 110 (308)
Q Consensus 48 ~~~~~l~~aG-----~~~~~i~~~~~~------------~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~ 110 (308)
...+.++.+| +++..+...... ..+. ....+|+|++|||.. .. .....+.+.+++++
T Consensus 16 ~~~d~~~~a~~~~~~~~v~~vs~~~~~v~~~~g~~i~~d~~~~-~~~~~D~lvipgg~~-~~----~~~~~~~~~~~l~~ 89 (183)
T cd03139 16 GPYEVFGRAPRLAAPFEVFLVSETGGPVSSRSGLTVLPDTSFA-DPPDLDVLLVPGGGG-TR----ALVNDPALLDFIRR 89 (183)
T ss_pred eHHHHHHHhhccCCCEEEEEEECCCCceEeCCCCEEcCCcccc-cCCCCCEEEECCCcc-hh----hhccCHHHHHHHHH
Confidence 3456777776 677666432210 0111 234799999999852 11 11223468888888
Q ss_pred HHHcCCCccEEEechhhhHHHHH
Q psy12875 111 INEEGVTFPVLGVCLGFELILQV 133 (308)
Q Consensus 111 ~~~~g~~~PvlGIC~G~Qll~~~ 133 (308)
+.+++ ++|.++|.|..+|+.+
T Consensus 90 ~~~~~--k~i~aic~g~~~La~a 110 (183)
T cd03139 90 QAARA--KYVTSVCTGALLLAAA 110 (183)
T ss_pred hcccC--CEEEEEchHHHHHHhc
Confidence 88854 8999999999888876
No 212
>PRK05368 homoserine O-succinyltransferase; Provisional
Probab=95.29 E-value=0.012 Score=54.37 Aligned_cols=22 Identities=14% Similarity=0.005 Sum_probs=20.6
Q ss_pred CCCCeeeeehhHHHHHHHhCCc
Q psy12875 173 VTFPVLGVCLGFELILQVSNND 194 (308)
Q Consensus 173 ~~~PilGiClG~Qll~~~~G~~ 194 (308)
..+|+||||+|||++++++||.
T Consensus 134 ~~~s~LgICwGaQa~a~algGi 155 (302)
T PRK05368 134 HVTSTLFICWAAQAALYHLYGI 155 (302)
T ss_pred cCCCEEEEcHHHHHHHHHcCCC
Confidence 4799999999999999999996
No 213
>TIGR01383 not_thiJ DJ-1 family protein. This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus.
Probab=95.13 E-value=0.03 Score=47.24 Aligned_cols=52 Identities=23% Similarity=0.503 Sum_probs=38.3
Q ss_pred cCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875 76 LTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQV 133 (308)
Q Consensus 76 l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~ 133 (308)
...+|.|++|||... . ......+.+.++++++.+++ ++|.+||.|-.+|+.+
T Consensus 61 ~~~~D~l~v~Gg~~~--~--~~~~~~~~l~~~l~~~~~~~--~~i~~ic~G~~~La~a 112 (179)
T TIGR01383 61 LEEFDAIVLPGGMPG--A--ENLRNSKLLLNILKKQESKG--KLVAAICAAPAVLLAA 112 (179)
T ss_pred cccCCEEEECCCchH--H--HHHhhCHHHHHHHHHHHHCC--CEEEEEChhHHHHHhc
Confidence 457999999998411 0 01112346888888888854 9999999999999976
No 214
>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex
Probab=94.91 E-value=0.021 Score=51.30 Aligned_cols=20 Identities=25% Similarity=0.517 Sum_probs=17.8
Q ss_pred cCCCCeeeeehhHHHHHHHh
Q psy12875 172 GVTFPVLGVCLGFELILQVS 191 (308)
Q Consensus 172 ~~~~PilGiClG~Qll~~~~ 191 (308)
..++|+||||+|+|+|+...
T Consensus 70 ~~g~PvLGiC~GmqlLa~~~ 89 (248)
T PLN02832 70 KSGKPVWGTCAGLIFLAERA 89 (248)
T ss_pred HcCCCEEEEChhHHHHHHHh
Confidence 46889999999999999975
No 215
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I. In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.
Probab=94.67 E-value=0.03 Score=49.68 Aligned_cols=127 Identities=13% Similarity=0.195 Sum_probs=75.0
Q ss_pred hhHhhh-cCCCCeeeeehhHHHHHHH--hCCcccccCCcccceeeecccccCCCCCCcCccCCChhHHHhhccCCceeec
Q psy12875 166 SQINEE-GVTFPVLGVCLGFELILQV--SNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNN 242 (308)
Q Consensus 166 ~~i~~~-~~~~PilGiClG~Qll~~~--~G~~v~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~ 242 (308)
.++++. ...+|++|||.|+|+|+.+ +++.+.+...++....-.++... ..+++++++++......+ + +.+.
T Consensus 69 ~~l~~~~~~g~pvlgIC~G~QlLa~~GlL~G~l~~n~~~~~~~~~~~~~v~--~~~~~~~~~~~~g~~~~~---p-i~H~ 142 (227)
T TIGR01737 69 QEVREFAEKGVPVLGICNGFQILVEAGLLPGALLPNDSLRFICRWVYLRVE--NADTIFTKNYKKGEVIRI---P-IAHG 142 (227)
T ss_pred HHHHHHHHcCCEEEEECHHHHHHHHcCCCCCceeecCCCceEEEeEEEEEC--CCCChhhccCCCCCEEEE---E-eEcC
Confidence 344443 5689999999999999995 88887765443321111111111 235677777764211100 1 1222
Q ss_pred -cceeeeeccccccCCCCCeEEEEEe------------cCCCceEEEEEEecCCCEEEEeecCCccCcccC
Q psy12875 243 -HIWCITRQDMIKYGLTETWNILTLS------------KYKSWEFVSTVEHKEYPIVGIQFHPEKNAYEWT 300 (308)
Q Consensus 243 -H~~~v~~~~~~~~~l~~~~~via~s------------~~~~~~~v~ai~~~~~p~~GvQFHPE~~~~~~~ 300 (308)
|++.++++.+. .|.+..+++.+- +++....|+++.+++.+++|+|||||+...+|.
T Consensus 143 eG~y~~~~~~l~--~l~~~~~i~~~y~d~~g~~~~~~npngs~~~i~~i~~~~~~~~g~~~HpE~~~~~~~ 211 (227)
T TIGR01737 143 EGRYYADDETLA--RLESNDQVVFRYCDEDGDVAEEANPNGSVGNIAGIVNERGNVLGMMPHPERASEKLL 211 (227)
T ss_pred CcCeEcCHHHHH--HHHHCCcEEEEEECCCCCCCCCCCCCCCHHHHcccCCCCCCEEEEecCchhhccccc
Confidence 35555443321 255555555443 223334699999999999999999999965543
No 216
>KOG2764|consensus
Probab=94.34 E-value=0.19 Score=44.30 Aligned_cols=72 Identities=13% Similarity=0.246 Sum_probs=47.4
Q ss_pred HHHHHHcCCeEEEEEcCCC--------------hhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcC
Q psy12875 50 VKNIEAAGARVVPILIGQD--------------REYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEG 115 (308)
Q Consensus 50 ~~~l~~aG~~~~~i~~~~~--------------~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g 115 (308)
.+.|++.|..+.....+.. ....+..-+.||.|++|||.- .. .+......+.+.++++.+.
T Consensus 25 ~dVLrr~Gi~Vt~ag~~~~~~vkcs~~v~~~~d~~l~D~~~~~yDviilPGG~~--g~--e~L~~~~~v~~lvK~q~~~- 99 (247)
T KOG2764|consen 25 IDVLRRGGIDVTVAGPNKKEGVKCSRGVHILPDNALFDVVDSKYDVIILPGGLP--GA--ETLSECEKVVDLVKEQAES- 99 (247)
T ss_pred HHHHHhcCceEEEecCCCCcccccccceEecccccchhhccccccEEEecCCch--hh--hhhhhcHHHHHHHHHHHhc-
Confidence 5788899988887654322 111122236899999999941 11 2333344566777887774
Q ss_pred CCccEEEechhh
Q psy12875 116 VTFPVLGVCLGF 127 (308)
Q Consensus 116 ~~~PvlGIC~G~ 127 (308)
+++|.+||.|-
T Consensus 100 -gkLIaaICaap 110 (247)
T KOG2764|consen 100 -GKLIAAICAAP 110 (247)
T ss_pred -CCeEEEeecch
Confidence 49999999997
No 217
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=94.04 E-value=0.047 Score=53.01 Aligned_cols=47 Identities=19% Similarity=0.276 Sum_probs=31.6
Q ss_pred ceeeecCCCCcch---hhhHhhh-cCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875 152 NLKFLPGAKRSSL---FSQINEE-GVTFPVLGVCLGFELILQVSNNDTDFR 198 (308)
Q Consensus 152 ~l~~~pg~~~~~~---~~~i~~~-~~~~PilGiClG~Qll~~~~G~~v~~~ 198 (308)
++.+-+|-+.... +..++.. ..++|.||||||||+....+..+|--.
T Consensus 346 gIlVPGGFG~RG~eGkI~Ai~yAREn~iP~lGIClGmQ~aviE~ARnv~Gl 396 (533)
T COG0504 346 GILVPGGFGYRGVEGKIAAIRYARENNIPFLGICLGMQLAVIEFARNVLGL 396 (533)
T ss_pred EEEeCCCCCcCchHHHHHHHHHHHhcCCCEEEEchhHHHHHHHHHHHhcCC
Confidence 4445455554432 4455543 569999999999999998777665443
No 218
>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.
Probab=93.89 E-value=0.044 Score=47.37 Aligned_cols=21 Identities=29% Similarity=0.566 Sum_probs=18.8
Q ss_pred cCCCCeeeeehhHHHHHHHhC
Q psy12875 172 GVTFPVLGVCLGFELILQVSN 192 (308)
Q Consensus 172 ~~~~PilGiClG~Qll~~~~G 192 (308)
...+|++|||.|+|+|++.+.
T Consensus 70 ~~g~pvlgiC~G~qlL~~~~~ 90 (194)
T cd01750 70 RAGGPVLGICGGYQMLGKYIV 90 (194)
T ss_pred HCCCcEEEECHHHHHhhhhcc
Confidence 568999999999999999874
No 219
>cd03136 GATase1_AraC_ArgR_like AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn betwee
Probab=93.84 E-value=0.1 Score=44.35 Aligned_cols=50 Identities=14% Similarity=0.201 Sum_probs=37.8
Q ss_pred cCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875 76 LTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQV 133 (308)
Q Consensus 76 l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~ 133 (308)
..++|.|++|||.. . .....+.+.++++++.+++ +.|.++|-|..+|+.+
T Consensus 62 ~~~~D~liipgg~~-~-----~~~~~~~~~~~l~~~~~~~--~~i~aic~g~~~La~a 111 (185)
T cd03136 62 APPLDYLFVVGGLG-A-----RRAVTPALLAWLRRAARRG--VALGGIDTGAFLLARA 111 (185)
T ss_pred cCCCCEEEEeCCCC-c-----cccCCHHHHHHHHHHHhcC--CEEEEEcHHHHHHHHc
Confidence 45789999999842 1 1122346888888888754 8999999999999976
No 220
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=93.61 E-value=0.05 Score=49.31 Aligned_cols=32 Identities=19% Similarity=0.371 Sum_probs=25.8
Q ss_pred cCCCceEEEEEEecCCCEEEEeecCCccCccc
Q psy12875 268 KYKSWEFVSTVEHKEYPIVGIQFHPEKNAYEW 299 (308)
Q Consensus 268 ~~~~~~~v~ai~~~~~p~~GvQFHPE~~~~~~ 299 (308)
+++...-|++|-..+.+++|+.-|||+....|
T Consensus 201 PNGs~~~IAGi~~~~G~vlglMpHPEr~~~~~ 232 (261)
T PRK01175 201 PNGSIYNIAGITNEKGNVIGLMPHPERAFYGY 232 (261)
T ss_pred CCCChhhcceeECCCCCEEEEcCCHHHhhchh
Confidence 33443348899999999999999999998876
No 221
>PF13278 DUF4066: Putative amidotransferase; PDB: 3BHN_A 3MGK_B 3NOV_A 3NON_B 3NOO_B 3NOQ_A 3NOR_A 3GRA_A 3EWN_A 3ER6_C ....
Probab=93.11 E-value=0.18 Score=42.06 Aligned_cols=51 Identities=20% Similarity=0.392 Sum_probs=37.0
Q ss_pred cCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875 76 LTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQV 133 (308)
Q Consensus 76 l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~ 133 (308)
...+|.|++|||.. . ........+.+++++..+++ .+|.++|-|..+|+.+
T Consensus 59 ~~~~D~lvvpg~~~---~--~~~~~~~~l~~~l~~~~~~~--~~i~aic~G~~~La~a 109 (166)
T PF13278_consen 59 APDFDILVVPGGPG---F--DAAAKDPALLDWLRQQHAQG--TYIAAICTGALLLAEA 109 (166)
T ss_dssp CSCCSEEEEE-STT---H--HHHTT-HHHHHHHHHHHCCT--SEEEEETTHHHHHHHT
T ss_pred cccCCEEEeCCCCC---c--hhcccCHHHHHHhhhhhccc--eEEeeeehHHHHHhhh
Confidence 56799999999963 0 11222346778888777744 9999999999999987
No 222
>PRK13526 glutamine amidotransferase subunit PdxT; Provisional
Probab=92.86 E-value=0.083 Score=45.09 Aligned_cols=99 Identities=18% Similarity=0.189 Sum_probs=55.3
Q ss_pred hhHhhhcCCCCeeeeehhHHHHHHH---hC---CcccccCCcccceeeecccccCCCCCCcCccCCChhHHHhhccCCce
Q psy12875 166 SQINEEGVTFPVLGVCLGFELILQV---SN---NDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLT 239 (308)
Q Consensus 166 ~~i~~~~~~~PilGiClG~Qll~~~---~G---~~v~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v 239 (308)
+.+++...++|++|||.|+|+|+.. +| ++|.+...|+...--. ...-+.+.
T Consensus 64 ~~Ik~~~~~kpilGICaG~qlL~~~s~~Lg~idg~V~Rn~~Grq~~sf~---------~~~~~~~~-------------- 120 (179)
T PRK13526 64 DKLYNFCSSKPVFGTCAGSIILSKGEGYLNLLDLEVQRNAYGRQVDSFV---------ADISFNDK-------------- 120 (179)
T ss_pred HHHHHHHcCCcEEEEcHHHHHHHccCCCCCCccEEEEEcCCCCccceee---------eecCcCCc--------------
Confidence 3444433467999999999999983 33 4444443332110000 00000111
Q ss_pred eeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEecCCCEEEEeecCCccC
Q psy12875 240 HNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNA 296 (308)
Q Consensus 240 ~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~~~p~~GvQFHPE~~~ 296 (308)
.+|---|+.+.+. ...++.+++|+-++ . +.+++..+ ++++-||||-+.
T Consensus 121 -~~~~vFiRAP~i~--~~~~~v~vla~~~~-~---~v~v~q~~--~l~~~FHPElt~ 168 (179)
T PRK13526 121 -NITGVFIRAPKFI--VVGNQVDILSKYQN-S---PVLLRQAN--ILVSSFHPELTQ 168 (179)
T ss_pred -eEEEEEEcCceEe--EcCCCcEEEEEECC-E---EEEEEECC--EEEEEeCCccCC
Confidence 1232223333222 16789999998643 2 55777664 999999999864
No 223
>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.
Probab=92.83 E-value=0.089 Score=45.59 Aligned_cols=20 Identities=15% Similarity=0.200 Sum_probs=17.8
Q ss_pred cCCCCeeeeehhHHHHHHHh
Q psy12875 172 GVTFPVLGVCLGFELILQVS 191 (308)
Q Consensus 172 ~~~~PilGiClG~Qll~~~~ 191 (308)
...+|++|||.|+|+|++.+
T Consensus 73 ~~g~pilgICgG~qlL~~~~ 92 (198)
T cd03130 73 ESGGPIYAECGGLMYLGESL 92 (198)
T ss_pred HcCCCEEEEcccHHHHHHHh
Confidence 45789999999999999975
No 224
>PRK09393 ftrA transcriptional activator FtrA; Provisional
Probab=92.58 E-value=0.33 Score=45.16 Aligned_cols=51 Identities=20% Similarity=0.351 Sum_probs=38.4
Q ss_pred cCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHHh
Q psy12875 76 LTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQVS 134 (308)
Q Consensus 76 l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~~ 134 (308)
...+|.|++|||.. ... .....+.++++++.+++ ++|.+||-|..+|+.+.
T Consensus 73 ~~~~D~livpGg~~-~~~-----~~~~~l~~~l~~~~~~~--~~i~aic~g~~~La~aG 123 (322)
T PRK09393 73 LDRADTIVIPGWRG-PDA-----PVPEPLLEALRAAHARG--ARLCSICSGVFVLAAAG 123 (322)
T ss_pred cCCCCEEEECCCCc-ccc-----cCCHHHHHHHHHHHHcC--CEEEEEcHHHHHHHhcc
Confidence 56789999999852 211 11346888888888754 89999999999999763
No 225
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=92.48 E-value=0.37 Score=42.09 Aligned_cols=80 Identities=15% Similarity=0.264 Sum_probs=57.5
Q ss_pred ccchHHHHHHHHHHcCCeEEEEEcCCC-hhHHHHhcCCCCEEEEcCCCCCCCCCCchhHH-HHHHHHHHHHHHHcCCCcc
Q psy12875 42 TSYIAASYVKNIEAAGARVVPILIGQD-REYYAEILTQINGVVIPGGGTGFDHPNGYADA-GRQILHLVDKINEEGVTFP 119 (308)
Q Consensus 42 ~~~i~~~~~~~l~~aG~~~~~i~~~~~-~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~-~~~~~e~~~~~~~~g~~~P 119 (308)
+.|+. ...++|+..|..+.-++...+ .+.++..+.+.|.|++.||.. .+ ....+ +..+.+.+++.+++| +|
T Consensus 48 ~~Yv~-k~~~~l~~lg~~v~~L~l~~~~~~~Ie~~l~~~d~IyVgGGNT-F~---LL~~lke~gld~iIr~~vk~G--~~ 120 (224)
T COG3340 48 DFYVE-KVRNALAKLGLEVSELHLSKPPLAAIENKLMKADIIYVGGGNT-FN---LLQELKETGLDDIIRERVKAG--TP 120 (224)
T ss_pred HHHHH-HHHHHHHHcCCeeeeeeccCCCHHHHHHhhhhccEEEECCchH-HH---HHHHHHHhCcHHHHHHHHHcC--Cc
Confidence 44664 567899999999998887644 456677788899999999952 10 01112 235778889999966 99
Q ss_pred EEEechhhh
Q psy12875 120 VLGVCLGFE 128 (308)
Q Consensus 120 vlGIC~G~Q 128 (308)
..|+-.|.-
T Consensus 121 YiG~SAGA~ 129 (224)
T COG3340 121 YIGWSAGAN 129 (224)
T ss_pred eEEeccCce
Confidence 999988863
No 226
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=91.53 E-value=0.1 Score=51.41 Aligned_cols=18 Identities=22% Similarity=0.624 Sum_probs=16.8
Q ss_pred CCCeeeeehhHHHHHHHh
Q psy12875 174 TFPVLGVCLGFELILQVS 191 (308)
Q Consensus 174 ~~PilGiClG~Qll~~~~ 191 (308)
.+|+||||.|+|+|++..
T Consensus 65 g~pvlGICgG~QmLg~~~ 82 (476)
T PRK06278 65 DGYIIGICSGFQILSEKI 82 (476)
T ss_pred CCeEEEEcHHHHhccccc
Confidence 799999999999999875
No 227
>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase. Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site
Probab=90.82 E-value=0.17 Score=45.18 Aligned_cols=123 Identities=17% Similarity=0.203 Sum_probs=65.9
Q ss_pred hhHhhh-cCCCCeeeeehhHHHHHHH--hCCcccccCCcccceee----ecccccCCCCCCcCccCC-C-hhHHHhhccC
Q psy12875 166 SQINEE-GVTFPVLGVCLGFELILQV--SNNDTDFRKSCKVQQVN----LNLKFLPGAKRSSLFSQV-P-SKYIKKFYQK 236 (308)
Q Consensus 166 ~~i~~~-~~~~PilGiClG~Qll~~~--~G~~v~~~~~g~~~~~~----~~~~~~~~~~~~~l~~~~-~-~~~~~~~~~~ 236 (308)
..++++ ..++|++|||.|+|+|+.+ +++++...+..+..... .++... ..++.++..+ + ..+..
T Consensus 73 ~~l~~~~~~g~pvlGIC~G~QlL~~~gll~g~~~~~~~~~~~~~~~~~~v~~~v~--~~~si~t~~~~~g~~l~~----- 145 (238)
T cd01740 73 EEVKEFAERGGLVLGICNGFQILVELGLLPGALIRNKGLKFICRWQNRFVTLRVE--NNDSPFTKGYMEGEVLRI----- 145 (238)
T ss_pred HHHHHHHhCCCeEEEECcHHHHHHHcCCCccccccCCCCceeccccCceEEEEEc--CCCCceecCCCCCCEEEE-----
Confidence 445543 5689999999999999997 88877654433221110 111111 2345555542 1 22221
Q ss_pred Cceeeccce---eeeeccccccCCCCCeEEEE-------------EecCCCceEEEEEEecCCCEEEEeecCCccCcccC
Q psy12875 237 PLTHNNHIW---CITRQDMIKYGLTETWNILT-------------LSKYKSWEFVSTVEHKEYPIVGIQFHPEKNAYEWT 300 (308)
Q Consensus 237 ~~v~~~H~~---~v~~~~~~~~~l~~~~~via-------------~s~~~~~~~v~ai~~~~~p~~GvQFHPE~~~~~~~ 300 (308)
+..|.+ ..+++.+.. +-+.-+++- .++++...-|++|-.++.+++|+..|||+....|-
T Consensus 146 ---~vaHgeG~~~~~~~~~~~--l~~~~~i~~y~~~~~~~~~~yp~NPnGs~~~iAgi~~~~GrvlglMphPer~~~~~q 220 (238)
T cd01740 146 ---PVAHGEGRFYADDETLAE--LEENGQIAQYVDDDGNVTERYPANPNGSLDGIAGICNEDGRVLGMMPHPERAVEPWQ 220 (238)
T ss_pred ---EeECCceeeEcCHHHHHH--HHHCCCEEEEEcCCCCccccCCCCCCCChhcceEEEcCCCCEEEEcCChHHcccccc
Confidence 333432 111111100 101001110 12344433488999999999999999999988753
No 228
>KOG2387|consensus
Probab=90.34 E-value=0.13 Score=49.40 Aligned_cols=25 Identities=28% Similarity=0.554 Sum_probs=20.8
Q ss_pred cCCCCeeeeehhHHHHHHHhCCccc
Q psy12875 172 GVTFPVLGVCLGFELILQVSNNDTD 196 (308)
Q Consensus 172 ~~~~PilGiClG~Qll~~~~G~~v~ 196 (308)
..++|.||||||||+-...|..++-
T Consensus 390 en~iP~LGiCLGmQ~AvIEfaRnvL 414 (585)
T KOG2387|consen 390 ENKIPFLGICLGMQLAVIEFARNVL 414 (585)
T ss_pred hcCCCeEeeehhhhHHHHHHHHHhh
Confidence 5689999999999998887765553
No 229
>PF09825 BPL_N: Biotin-protein ligase, N terminal; InterPro: IPR019197 The function of this structural domain is unknown. It is found to the N terminus of the biotin protein ligase catalytic domain []. Biotin protein ligase carries out the post-translational modification of specific proteins by the attachment of biotin. It acts on various carboxylases such as acetyl-CoA-carboxylase, pyruvate carboxylase, propionyl CoA carboxylase, and 3-methylcrotonyl CoA carboxylase.
Probab=89.46 E-value=0.94 Score=43.07 Aligned_cols=48 Identities=23% Similarity=0.368 Sum_probs=33.7
Q ss_pred hcCCCCEEEEcCCCCCCCCCCchhHHHH-HHHHHHHHHHHcCCCccEEEechhhhH
Q psy12875 75 ILTQINGVVIPGGGTGFDHPNGYADAGR-QILHLVDKINEEGVTFPVLGVCLGFEL 129 (308)
Q Consensus 75 ~l~~~dGlilpGG~~~~~~~~~~~~~~~-~~~e~~~~~~~~g~~~PvlGIC~G~Ql 129 (308)
...+++.+|+|||. |. .|.+... .-.+.+|+++++| --.||||.|.-.
T Consensus 46 w~~~~~LlV~PGG~-d~----~y~~~l~~~g~~~Ir~fV~~G--G~YlGiCAGaY~ 94 (367)
T PF09825_consen 46 WQSKCALLVMPGGA-DL----PYCRSLNGEGNRRIRQFVENG--GGYLGICAGAYY 94 (367)
T ss_pred cccCCcEEEECCCc-ch----HHHHhhChHHHHHHHHHHHcC--CcEEEECcchhh
Confidence 34678999999986 33 2444322 3366788888865 679999999743
No 230
>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=87.97 E-value=0.39 Score=42.27 Aligned_cols=36 Identities=14% Similarity=0.228 Sum_probs=28.5
Q ss_pred ecCCCceEEEEEEecCCCEEEEeecCCccCcccCCC
Q psy12875 267 SKYKSWEFVSTVEHKEYPIVGIQFHPEKNAYEWTES 302 (308)
Q Consensus 267 s~~~~~~~v~ai~~~~~p~~GvQFHPE~~~~~~~~~ 302 (308)
++++...-|++|-..+.+++|+.=||||....|-.+
T Consensus 181 NPNGS~~~IaGI~n~~G~V~gmMPHPERa~~~~~g~ 216 (231)
T COG0047 181 NPNGSVNGIAGITNEDGNVLGMMPHPERASESLLGG 216 (231)
T ss_pred CCCCChhhceeEEcCCCCEEEecCCchhhhhcccCC
Confidence 344444458899999999999999999998877653
No 231
>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []. Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process
Probab=87.47 E-value=0.57 Score=38.98 Aligned_cols=27 Identities=19% Similarity=0.313 Sum_probs=21.3
Q ss_pred hhHhhh-cCCCCeeeeehhHHHHHHHhC
Q psy12875 166 SQINEE-GVTFPVLGVCLGFELILQVSN 192 (308)
Q Consensus 166 ~~i~~~-~~~~PilGiClG~Qll~~~~G 192 (308)
+.|++. ....||+|+|-|+|+|++.+-
T Consensus 33 ~~I~~~~~~G~pi~aeCGG~~~Lg~~i~ 60 (158)
T PF07685_consen 33 EAIREAAEAGGPIYAECGGYQYLGESII 60 (158)
T ss_pred HHHHHHHHcCCcEEEEchHHHHHHHHHh
Confidence 344443 567999999999999999764
No 232
>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]
Probab=86.63 E-value=0.76 Score=45.01 Aligned_cols=40 Identities=25% Similarity=0.399 Sum_probs=27.0
Q ss_pred ceeeecCCCCcc-hhhh---------Hh-hhcCCCCeeeeehhHHHHHHHh
Q psy12875 152 NLKFLPGAKRSS-LFSQ---------IN-EEGVTFPVLGVCLGFELILQVS 191 (308)
Q Consensus 152 ~l~~~pg~~~~~-~~~~---------i~-~~~~~~PilGiClG~Qll~~~~ 191 (308)
.+.+.||..+.. ...+ +. ......|++|||-|+|+|...+
T Consensus 292 dlvIlPGsk~t~~DL~~lr~~g~d~~i~~~~~~~~~viGICGG~QmLG~~i 342 (486)
T COG1492 292 DLVILPGSKNTIADLKILREGGMDEKILEYARKGGDVIGICGGYQMLGRRL 342 (486)
T ss_pred CEEEeCCCcccHHHHHHHHHcCHHHHHHHHHhCCCCEEEEcchHHhhhhhh
Confidence 467777776643 1112 22 2245889999999999999854
No 233
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=83.97 E-value=0.82 Score=45.14 Aligned_cols=20 Identities=20% Similarity=0.388 Sum_probs=17.7
Q ss_pred cCCCCeeeeehhHHHHHHHh
Q psy12875 172 GVTFPVLGVCLGFELILQVS 191 (308)
Q Consensus 172 ~~~~PilGiClG~Qll~~~~ 191 (308)
....|++|||.|+|+|++.+
T Consensus 317 ~~G~pvlgiCgG~q~Lg~~i 336 (475)
T TIGR00313 317 KEGGIVIGICGGYQMLGKEL 336 (475)
T ss_pred HcCCcEEEEcHHHHHhhhhh
Confidence 45789999999999999965
No 234
>PRK00784 cobyric acid synthase; Provisional
Probab=83.84 E-value=0.85 Score=45.16 Aligned_cols=20 Identities=30% Similarity=0.581 Sum_probs=18.1
Q ss_pred cCCCCeeeeehhHHHHHHHh
Q psy12875 172 GVTFPVLGVCLGFELILQVS 191 (308)
Q Consensus 172 ~~~~PilGiClG~Qll~~~~ 191 (308)
....|++|+|.|+|+|++.+
T Consensus 323 ~~g~pilg~C~G~~~L~~~~ 342 (488)
T PRK00784 323 RRGGPVLGICGGYQMLGRRI 342 (488)
T ss_pred HcCCeEEEECHHHHHHhhhc
Confidence 45789999999999999976
No 235
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=83.62 E-value=17 Score=30.32 Aligned_cols=68 Identities=22% Similarity=0.227 Sum_probs=40.2
Q ss_pred CCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcC-CChhHHHH----h--cCCCCEEEEcCCCC
Q psy12875 17 DTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIG-QDREYYAE----I--LTQINGVVIPGGGT 89 (308)
Q Consensus 17 ~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~-~~~~~~~~----~--l~~~dGlilpGG~~ 89 (308)
.+|.+||++..... ...+ ++ -...+..+|++.|+++.....- ++.+.+.+ . .+.+|-||.+||.
T Consensus 3 ~~~rv~vit~~d~~----~~~~---d~-n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVIttGGt- 73 (163)
T TIGR02667 3 IPLRIAILTVSDTR----TEED---DT-SGQYLVERLTEAGHRLADRAIVKDDIYQIRAQVSAWIADPDVQVILITGGT- 73 (163)
T ss_pred CccEEEEEEEeCcC----CccC---CC-cHHHHHHHHHHCCCeEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCc-
Confidence 46899998765432 1111 11 1224567789999988765443 34343332 2 2468999999886
Q ss_pred CCCC
Q psy12875 90 GFDH 93 (308)
Q Consensus 90 ~~~~ 93 (308)
...+
T Consensus 74 g~g~ 77 (163)
T TIGR02667 74 GFTG 77 (163)
T ss_pred CCCC
Confidence 4444
No 236
>COG0303 MoeA Molybdopterin biosynthesis enzyme [Coenzyme metabolism]
Probab=82.64 E-value=11 Score=36.34 Aligned_cols=79 Identities=19% Similarity=0.210 Sum_probs=46.2
Q ss_pred hhcccCCCCEEEEeccccCCCCcccccCCCC-ccchHHHHHHHHHHcCCeEEEEEcCCC-hhHH----HHhcCCCCEEEE
Q psy12875 11 STVTSTDTPVIGILAQEYTHIPSYVKAYPNY-TSYIAASYVKNIEAAGARVVPILIGQD-REYY----AEILTQINGVVI 84 (308)
Q Consensus 11 ~~~~~~~~P~IGI~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~l~~aG~~~~~i~~~~~-~~~~----~~~l~~~dGlil 84 (308)
..|.-.+||.|||.+.-..-..-..+..++. .+.-...+...++++|++++....-.| .+.+ .+.++.+|-||.
T Consensus 169 ~~V~V~rkprV~IisTGdELv~~~~~l~~gqI~dsN~~~l~a~l~~~G~e~~~~giv~Dd~~~l~~~i~~a~~~~DviIt 248 (404)
T COG0303 169 AEVKVYRKPRVAIISTGDELVEPGQPLEPGQIYDSNSYMLAALLERAGGEVVDLGIVPDDPEALREAIEKALSEADVIIT 248 (404)
T ss_pred ceEEEecCCEEEEEecCccccCCCCCCCCCeEEecCHHHHHHHHHHcCCceeeccccCCCHHHHHHHHHHhhhcCCEEEE
Confidence 4556667899999977653311001111110 011112345788999998887665444 3333 334567999999
Q ss_pred cCCCC
Q psy12875 85 PGGGT 89 (308)
Q Consensus 85 pGG~~ 89 (308)
+||.+
T Consensus 249 sGG~S 253 (404)
T COG0303 249 SGGVS 253 (404)
T ss_pred eCCcc
Confidence 99974
No 237
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=82.30 E-value=5.6 Score=36.97 Aligned_cols=83 Identities=22% Similarity=0.188 Sum_probs=48.7
Q ss_pred EEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChh----------------H-HHHhcCCCCEE
Q psy12875 20 VIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDRE----------------Y-YAEILTQINGV 82 (308)
Q Consensus 20 ~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~----------------~-~~~~l~~~dGl 82 (308)
.|||...+... ...-+...+.++|++.|.++.......... . .....+.+|.+
T Consensus 7 ~I~iv~~~~~~----------~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v 76 (306)
T PRK03372 7 RVLLVAHTGRD----------EATEAARRVAKQLGDAGIGVRVLDAEAVDLGATHPAPDDFRAMEVVDADPDAADGCELV 76 (306)
T ss_pred EEEEEecCCCH----------HHHHHHHHHHHHHHHCCCEEEEeechhhhhcccccccccccccccccchhhcccCCCEE
Confidence 48988775432 111245677889999998877654221100 0 01123458999
Q ss_pred EEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhh
Q psy12875 83 VIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGF 127 (308)
Q Consensus 83 ilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~ 127 (308)
+.-||. - -++..++.+.. .++||+||-.|.
T Consensus 77 i~lGGD--G-----------T~L~aar~~~~--~~~PilGIN~G~ 106 (306)
T PRK03372 77 LVLGGD--G-----------TILRAAELARA--ADVPVLGVNLGH 106 (306)
T ss_pred EEEcCC--H-----------HHHHHHHHhcc--CCCcEEEEecCC
Confidence 999983 1 23344444444 459999999875
No 238
>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=81.37 E-value=1.1 Score=39.39 Aligned_cols=128 Identities=15% Similarity=0.237 Sum_probs=75.0
Q ss_pred hhhHhhh-cCCCCeeeeehhHHHHHHH--hCCcccccCCcccceeeecccccCCCCCCcCccCCChhHHHhhccCCceee
Q psy12875 165 FSQINEE-GVTFPVLGVCLGFELILQV--SNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHN 241 (308)
Q Consensus 165 ~~~i~~~-~~~~PilGiClG~Qll~~~--~G~~v~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~ 241 (308)
..++++. ...+|++|||.|+|+|+.+ +++++.+...++...-.+.+... ..++++++.+...... .-++..+
T Consensus 69 ~~~l~~~~~~g~~ilgIC~G~qlLa~~GLL~g~l~~n~~~~~~~~~v~v~i~--~~~~~~~~~~~~g~~~---~~~~aH~ 143 (219)
T PRK03619 69 MKAVKEFAEKGKPVLGICNGFQILTEAGLLPGALTRNASLKFICRDVHLRVE--NNDTPFTSGYEKGEVI---RIPIAHG 143 (219)
T ss_pred HHHHHHHHHCCCEEEEECHHHHHHHHcCCCCCeEEEcCCCcEEEEEEEEEEC--CCCChhhcCCCCCCEE---EEEEEcC
Confidence 3445543 5689999999999999997 88888766544431111122221 2467788776322110 0012234
Q ss_pred ccceeeeeccccccCCCCCeEEEEEe---cCCCceEEEEEEecCCCEEEEeecCCccCcc
Q psy12875 242 NHIWCITRQDMIKYGLTETWNILTLS---KYKSWEFVSTVEHKEYPIVGIQFHPEKNAYE 298 (308)
Q Consensus 242 ~H~~~v~~~~~~~~~l~~~~~via~s---~~~~~~~v~ai~~~~~p~~GvQFHPE~~~~~ 298 (308)
-|+|.++.+.+... ...++.++..+ +++....|+++...+..++|+|||||+....
T Consensus 144 ~~r~~~~~~~~~~l-~~~~~~~~~~~~~npngs~~~ia~i~~~~~~~~g~~~HPE~~~~~ 202 (219)
T PRK03619 144 EGNYYADEETLKRL-EGNGQVVFRYCDENPNGSVNDIAGIVNEKGNVLGMMPHPERAVEP 202 (219)
T ss_pred cccEEECHHHHHHH-HhCCcEEEEEcCCCCCCCHHHhcccCCCCCCEEEEeCCCCccccC
Confidence 46666654332211 24555544444 5554434777777666799999999999765
No 239
>PRK01215 competence damage-inducible protein A; Provisional
Probab=77.76 E-value=10 Score=34.49 Aligned_cols=66 Identities=20% Similarity=0.097 Sum_probs=39.3
Q ss_pred CCCCEEEEeccccCCCCcccccCCCC-ccchHHHHHHHHHHcCCeEEEEEc-CCChhHH----HHhcCCCCEEEEcCCC
Q psy12875 16 TDTPVIGILAQEYTHIPSYVKAYPNY-TSYIAASYVKNIEAAGARVVPILI-GQDREYY----AEILTQINGVVIPGGG 88 (308)
Q Consensus 16 ~~~P~IGI~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~l~~aG~~~~~i~~-~~~~~~~----~~~l~~~dGlilpGG~ 88 (308)
+++|.++|.+.-..- ..+. .+--...+.+.|++.|.++..... .++.+.+ ...++.+|-||++||-
T Consensus 1 ~~~~~v~Ii~~GdEl-------l~G~i~dtn~~~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~a~~~~DlVIttGG~ 72 (264)
T PRK01215 1 MDKWFAWIITIGNEL-------LIGRTVNTNASWIARRLTYLGYTVRRITVVMDDIEEIVSAFREAIDRADVVVSTGGL 72 (264)
T ss_pred CCCCEEEEEEEChhc-------cCCeEEEhhHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 468999998775432 1111 111122345778999998865543 3343333 3345678999999885
No 240
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=76.02 E-value=14 Score=29.97 Aligned_cols=43 Identities=23% Similarity=0.241 Sum_probs=29.4
Q ss_pred HHHHHHHHHcCCeEEEEEcC-CChhHHH----HhcCCCCEEEEcCCCC
Q psy12875 47 ASYVKNIEAAGARVVPILIG-QDREYYA----EILTQINGVVIPGGGT 89 (308)
Q Consensus 47 ~~~~~~l~~aG~~~~~i~~~-~~~~~~~----~~l~~~dGlilpGG~~ 89 (308)
..+..+|++.|+++.....- ++.+.+. +.++++|-||.+||.+
T Consensus 30 ~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~DliIttGG~g 77 (144)
T TIGR00177 30 PLLAALLEEAGFNVSRLGIVPDDPEEIREILRKAVDEADVVLTTGGTG 77 (144)
T ss_pred HHHHHHHHHCCCeEEEEeecCCCHHHHHHHHHHHHhCCCEEEECCCCC
Confidence 35567889999988866543 3333333 3446799999999863
No 241
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=75.83 E-value=11 Score=34.86 Aligned_cols=68 Identities=21% Similarity=0.222 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHcCCeEEEEEcCCCh-----------h---HHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHH
Q psy12875 45 IAASYVKNIEAAGARVVPILIGQDR-----------E---YYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDK 110 (308)
Q Consensus 45 i~~~~~~~l~~aG~~~~~i~~~~~~-----------~---~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~ 110 (308)
+...+.+||++.|..+......... . ......+.+|-++.-||. - -++..++.
T Consensus 17 ~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~lGGD--G-----------T~L~aa~~ 83 (292)
T PRK01911 17 YIQELFDELEERGAEVLIEEKFLDFLKQDLKFHPSYDTFSDNEELDGSADMVISIGGD--G-----------TFLRTATY 83 (292)
T ss_pred HHHHHHHHHHHCCCEEEEecchhhhhccccccccccccccchhhcccCCCEEEEECCc--H-----------HHHHHHHH
Confidence 4567788999999888765421110 0 011223468999999983 1 23334444
Q ss_pred HHHcCCCccEEEechhh
Q psy12875 111 INEEGVTFPVLGVCLGF 127 (308)
Q Consensus 111 ~~~~g~~~PvlGIC~G~ 127 (308)
+.. .++||+||-.|-
T Consensus 84 ~~~--~~~PilGIN~G~ 98 (292)
T PRK01911 84 VGN--SNIPILGINTGR 98 (292)
T ss_pred hcC--CCCCEEEEecCC
Confidence 443 359999999985
No 242
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=73.70 E-value=3 Score=40.86 Aligned_cols=20 Identities=25% Similarity=0.458 Sum_probs=17.9
Q ss_pred cCCCCeeeeehhHHHHHHHh
Q psy12875 172 GVTFPVLGVCLGFELILQVS 191 (308)
Q Consensus 172 ~~~~PilGiClG~Qll~~~~ 191 (308)
....|++|+|-|+|+|++.+
T Consensus 319 ~~G~pv~g~CgG~~~L~~~i 338 (449)
T TIGR00379 319 HQGLPIYGECGGLMYLSQSL 338 (449)
T ss_pred HcCCCEEEEcHHHHHHHhhh
Confidence 45789999999999999976
No 243
>PRK14690 molybdopterin biosynthesis protein MoeA; Provisional
Probab=73.53 E-value=22 Score=34.61 Aligned_cols=79 Identities=14% Similarity=0.101 Sum_probs=43.3
Q ss_pred hhcccCCCCEEEEeccccCCCCcccccCCCC-ccchHHHHHHHHHHcCCeEEEEEc-CCChhHHHH----hcCCCCEEEE
Q psy12875 11 STVTSTDTPVIGILAQEYTHIPSYVKAYPNY-TSYIAASYVKNIEAAGARVVPILI-GQDREYYAE----ILTQINGVVI 84 (308)
Q Consensus 11 ~~~~~~~~P~IGI~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~l~~aG~~~~~i~~-~~~~~~~~~----~l~~~dGlil 84 (308)
..|.-..+|.|||++.-..-.........+. .+.-...+..+|++.|+++..... .++.+.+.+ .++++|-||.
T Consensus 186 ~~V~V~~~prV~IisTGdEl~~~g~~~~~g~i~dsN~~~L~a~l~~~G~~v~~~~~v~Dd~~~i~~~l~~a~~~~DlIIt 265 (419)
T PRK14690 186 TRVSVRRPLRVAVLSTGDELVEPGALAEVGQIYDANRPMLLALARRWGHAPVDLGRVGDDRAALAARLDRAAAEADVILT 265 (419)
T ss_pred CeeEeecCCEEEEEEccccccCCCCCCCCCeEEeCHHHHHHHHHHHCCCEEEEEeeeCCCHHHHHHHHHHhCccCCEEEE
Confidence 3455556899999976533210000001111 111122455678999998875544 344443433 3467899999
Q ss_pred cCCCC
Q psy12875 85 PGGGT 89 (308)
Q Consensus 85 pGG~~ 89 (308)
+||.+
T Consensus 266 TGG~S 270 (419)
T PRK14690 266 SGGAS 270 (419)
T ss_pred cCCcc
Confidence 98863
No 244
>cd03522 MoeA_like MoeA_like. This domain is similar to a domain found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. There this domain is presumed to bind molybdopterin. The exact function of this subgroup is unknown.
Probab=71.79 E-value=29 Score=32.37 Aligned_cols=75 Identities=16% Similarity=0.210 Sum_probs=44.9
Q ss_pred hhcccCCCCEEEEeccccCCCCcccccCCC-CccchHHHHHHHHHHcCCeEEEEEc-CCChhHHHH----hcCC-CCEEE
Q psy12875 11 STVTSTDTPVIGILAQEYTHIPSYVKAYPN-YTSYIAASYVKNIEAAGARVVPILI-GQDREYYAE----ILTQ-INGVV 83 (308)
Q Consensus 11 ~~~~~~~~P~IGI~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~l~~aG~~~~~i~~-~~~~~~~~~----~l~~-~dGli 83 (308)
..|....+|.++|++.-... ..+. .++. ...+..+|++.|+++..... .++.+.+.+ .+++ +|-||
T Consensus 152 ~~V~v~r~~rv~II~TG~Ev------~~G~i~D~~-~~~l~~~L~~~G~~v~~~~iv~Dd~~~I~~ai~~~~~~g~DlII 224 (312)
T cd03522 152 LRVAPFRPLRVGLIVTGSEV------YGGRIEDKF-GPVLRARLAALGVELVEQVIVPHDEAAIAAAIAEALEAGAELLI 224 (312)
T ss_pred cEEEecCCCEEEEEEcCCcC------CCCcEEEhH-HHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhcCCCCEEE
Confidence 45555678999999875421 0111 1222 23456788999998876544 334443333 3444 89999
Q ss_pred EcCCCCCCCC
Q psy12875 84 IPGGGTGFDH 93 (308)
Q Consensus 84 lpGG~~~~~~ 93 (308)
++||. ..++
T Consensus 225 tTGGt-svg~ 233 (312)
T cd03522 225 LTGGA-SVDP 233 (312)
T ss_pred EeCCc-ccCC
Confidence 99886 4555
No 245
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=71.69 E-value=15 Score=33.78 Aligned_cols=84 Identities=18% Similarity=0.160 Sum_probs=49.0
Q ss_pred CEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCCh--------hHHHHhcCCCCEEEEcCCCCC
Q psy12875 19 PVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDR--------EYYAEILTQINGVVIPGGGTG 90 (308)
Q Consensus 19 P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~--------~~~~~~l~~~dGlilpGG~~~ 90 (308)
..|||...+... ...-+...+.+||++.|..+......... .......+++|.++.-||.
T Consensus 6 ~~i~iv~~~~~~----------~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~lGGD-- 73 (292)
T PRK03378 6 KCIGIVGHPRHP----------TALTTHEMLYHWLTSKGYEVIVEQQIAHELQLKNVKTGTLAEIGQQADLAIVVGGD-- 73 (292)
T ss_pred CEEEEEEeCCCH----------HHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcCCCCCEEEEECCc--
Confidence 358888775432 11224567788999999887754321100 0112223468999999983
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhh
Q psy12875 91 FDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGF 127 (308)
Q Consensus 91 ~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~ 127 (308)
- -++..++.+.. ..+||+||-.|-
T Consensus 74 G-----------T~L~aa~~~~~--~~~Pilgin~G~ 97 (292)
T PRK03378 74 G-----------NMLGAARVLAR--YDIKVIGINRGN 97 (292)
T ss_pred H-----------HHHHHHHHhcC--CCCeEEEEECCC
Confidence 1 23333444433 349999999987
No 246
>PRK10680 molybdopterin biosynthesis protein MoeA; Provisional
Probab=71.65 E-value=23 Score=34.30 Aligned_cols=81 Identities=12% Similarity=0.033 Sum_probs=43.5
Q ss_pred hcccCCCCEEEEeccccCCCCcccccCCCC-ccchHHHHHHHHHHcCCeEEEEEc-CCChhHHHH----hcCCCCEEEEc
Q psy12875 12 TVTSTDTPVIGILAQEYTHIPSYVKAYPNY-TSYIAASYVKNIEAAGARVVPILI-GQDREYYAE----ILTQINGVVIP 85 (308)
Q Consensus 12 ~~~~~~~P~IGI~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~l~~aG~~~~~i~~-~~~~~~~~~----~l~~~dGlilp 85 (308)
.|.-..+|.|||++.-+.-........++. ...-...+..+|++.|+++..... .++.+.+.+ ..+.+|-||.+
T Consensus 171 ~V~V~~~prV~iistGdEl~~~~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~a~~~~DlvItt 250 (411)
T PRK10680 171 EVPVVRKVRVALFSTGDELQLPGQPLGDGQIYDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEADSQADVVISS 250 (411)
T ss_pred eEEecCCCEEEEEccCCeEeCCCCCCCCCEEEEhHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHhccCCCEEEEc
Confidence 344457899999876432100000011111 111111345678999998876544 344444433 24578999999
Q ss_pred CCCCCCCC
Q psy12875 86 GGGTGFDH 93 (308)
Q Consensus 86 GG~~~~~~ 93 (308)
||.+ ..+
T Consensus 251 GG~S-~G~ 257 (411)
T PRK10680 251 GGVS-VGE 257 (411)
T ss_pred CCCC-CCC
Confidence 9863 443
No 247
>cd03144 GATase1_ScBLP_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Biotin-apoprotein ligase modifies proteins by covalently attaching biotin. ScBLP is known to biotinylate acety-CoA carboxylase and pyruvate carboxylase. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, the Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in a typical GATase1 domain is conserved.
Probab=70.66 E-value=2.4 Score=33.41 Aligned_cols=16 Identities=31% Similarity=0.362 Sum_probs=13.6
Q ss_pred cCCCCeeeeehhHHHH
Q psy12875 172 GVTFPVLGVCLGFELI 187 (308)
Q Consensus 172 ~~~~PilGiClG~Qll 187 (308)
....|+||||+|.-+-
T Consensus 75 ~~g~p~LGIClGAy~a 90 (114)
T cd03144 75 RNGGNYLGICAGAYLA 90 (114)
T ss_pred HCCCcEEEEecCccce
Confidence 4679999999998766
No 248
>KOG0623|consensus
Probab=70.53 E-value=2.8 Score=39.17 Aligned_cols=19 Identities=21% Similarity=0.691 Sum_probs=15.8
Q ss_pred hcCCCCeeeeehhHHHHHH
Q psy12875 171 EGVTFPVLGVCLGFELILQ 189 (308)
Q Consensus 171 ~~~~~PilGiClG~Qll~~ 189 (308)
....+|+||||.|.|+|-.
T Consensus 71 iesgkPfmgicvGlQaLF~ 89 (541)
T KOG0623|consen 71 IESGKPFMGICVGLQALFD 89 (541)
T ss_pred HhcCCCeEeehhhHHHHhc
Confidence 3678999999999998743
No 249
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=70.31 E-value=23 Score=32.70 Aligned_cols=83 Identities=20% Similarity=0.249 Sum_probs=47.9
Q ss_pred EEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCC---h--------h--HHHHhcCCCCEEEEcC
Q psy12875 20 VIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQD---R--------E--YYAEILTQINGVVIPG 86 (308)
Q Consensus 20 ~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~---~--------~--~~~~~l~~~dGlilpG 86 (308)
.|||...+... ...-+...+.+||++.|..+........ . . ......+.+|-++.-|
T Consensus 7 ~i~ii~~~~~~----------~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~lG 76 (296)
T PRK04539 7 NIGIVTRPNTP----------DIQDTAHTLITFLKQHGFTVYLDEVGIKEGCIYTQDTVGCHIVNKTELGQYCDLVAVLG 76 (296)
T ss_pred EEEEEecCCCH----------HHHHHHHHHHHHHHHCCCEEEEecccccccchhccccccccccchhhcCcCCCEEEEEC
Confidence 38887775432 1112345778899999988876432111 0 0 0111223589999999
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhh
Q psy12875 87 GGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGF 127 (308)
Q Consensus 87 G~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~ 127 (308)
|. - -++..++.+.. ..+||+||-.|.
T Consensus 77 GD--G-----------T~L~aa~~~~~--~~~PilGIN~G~ 102 (296)
T PRK04539 77 GD--G-----------TFLSVAREIAP--RAVPIIGINQGH 102 (296)
T ss_pred Cc--H-----------HHHHHHHHhcc--cCCCEEEEecCC
Confidence 83 1 12333444333 359999999985
No 250
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=70.27 E-value=18 Score=33.55 Aligned_cols=83 Identities=18% Similarity=0.197 Sum_probs=47.8
Q ss_pred EEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCCh-----------------hHHHHhcCCCCEE
Q psy12875 20 VIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDR-----------------EYYAEILTQINGV 82 (308)
Q Consensus 20 ~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~-----------------~~~~~~l~~~dGl 82 (308)
.|||...+... ...-+...+.++|++.|..+......... .......+++|-+
T Consensus 3 ~igiv~n~~~~----------~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlv 72 (305)
T PRK02649 3 KAGIIYNDGKP----------LAVRTAEELQDKLEAAGWEVVRASSSGGILGYANPDQPVCHTGIDQLVPPGFDSSMKFA 72 (305)
T ss_pred EEEEEEcCCCH----------HHHHHHHHHHHHHHHCCCEEEEecchhhhcCccccccccccccccccChhhcccCcCEE
Confidence 47777665321 11224567788999999888754321100 0011223468999
Q ss_pred EEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhh
Q psy12875 83 VIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGF 127 (308)
Q Consensus 83 ilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~ 127 (308)
+.-||. - -++..++.+.. ..+||+||-.|-
T Consensus 73 i~iGGD--G-----------TlL~aar~~~~--~~iPilGIN~G~ 102 (305)
T PRK02649 73 IVLGGD--G-----------TVLSAARQLAP--CGIPLLTINTGH 102 (305)
T ss_pred EEEeCc--H-----------HHHHHHHHhcC--CCCcEEEEeCCC
Confidence 999983 1 23344444443 359999999874
No 251
>PRK14497 putative molybdopterin biosynthesis protein MoeA/unknown domain fusion protein; Provisional
Probab=69.48 E-value=31 Score=34.79 Aligned_cols=78 Identities=17% Similarity=0.302 Sum_probs=43.1
Q ss_pred hhcccCCCCEEEEeccccCCCCcccccCCCCccc-hHH-HHHHHHHHcCCeEEEEEc-CCChhHHHH----hcCCCCEEE
Q psy12875 11 STVTSTDTPVIGILAQEYTHIPSYVKAYPNYTSY-IAA-SYVKNIEAAGARVVPILI-GQDREYYAE----ILTQINGVV 83 (308)
Q Consensus 11 ~~~~~~~~P~IGI~~~~~~~~~~~~~~~~~~~~~-i~~-~~~~~l~~aG~~~~~i~~-~~~~~~~~~----~l~~~dGli 83 (308)
..|.--.||.|+|.+.-..-..-.....++ .-| .+. .+..++++.|+++..... .++.+.+.+ .++++|-||
T Consensus 172 ~~V~V~~rprV~IisTGdELv~pg~~l~~G-~I~dsNs~~L~a~l~~~G~~v~~~~iv~Dd~e~i~~~l~~al~~~DlVI 250 (546)
T PRK14497 172 SSVKVYEKPKIYLIATGDELVEPGNSLSPG-KIYESNLHYLYSKLKSEGYKIVGLSLLSDDKESIKNEIKRAISVADVLI 250 (546)
T ss_pred CEEeeccCCEEEEEEcCCcccCCCCCCCCC-cEEEhHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHhhhcCCEEE
Confidence 344445789999997653210000001111 111 122 344568899998776644 344444433 446799999
Q ss_pred EcCCCC
Q psy12875 84 IPGGGT 89 (308)
Q Consensus 84 lpGG~~ 89 (308)
++||.+
T Consensus 251 ttGGtS 256 (546)
T PRK14497 251 LTGGTS 256 (546)
T ss_pred EcCCcc
Confidence 999874
No 252
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=68.78 E-value=11 Score=27.65 Aligned_cols=37 Identities=22% Similarity=0.347 Sum_probs=28.3
Q ss_pred HHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCC
Q psy12875 48 SYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGF 91 (308)
Q Consensus 48 ~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~ 91 (308)
.+.++|++.|.+++.+.-.. .+..+|+++++|...++
T Consensus 12 ~v~~~L~~~GyeVv~l~~~~-------~~~~~daiVvtG~~~n~ 48 (80)
T PF03698_consen 12 NVKEALREKGYEVVDLENEQ-------DLQNVDAIVVTGQDTNM 48 (80)
T ss_pred HHHHHHHHCCCEEEecCCcc-------ccCCcCEEEEECCCccc
Confidence 45789999999998775221 46799999999986543
No 253
>COG4242 CphB Cyanophycinase and related exopeptidases [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=67.85 E-value=19 Score=32.42 Aligned_cols=97 Identities=15% Similarity=0.230 Sum_probs=59.1
Q ss_pred CCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCe-EEE--EEcCC--ChhHHHHhcCCCCEEEEcCCCCCCC
Q psy12875 18 TPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGAR-VVP--ILIGQ--DREYYAEILTQINGVVIPGGGTGFD 92 (308)
Q Consensus 18 ~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~-~~~--i~~~~--~~~~~~~~l~~~dGlilpGG~~~~~ 92 (308)
+..|.|.+.-+.. ...+...|.+..+..|++ +.+ +...+ +.+.....+++++||+|+||...
T Consensus 52 ~A~i~I~paas~e-----------p~~iG~~y~rife~~gv~~v~ildir~R~~a~~s~~~~~v~~a~gIfftGGDQ~-- 118 (293)
T COG4242 52 KAYIVIIPAASRE-----------PRAIGGNYIRIFEMMGVEEVQILDIRNREDASSSDIVAKVENATGIFFTGGDQL-- 118 (293)
T ss_pred ceEEEEEecCccC-----------hhhhccchhhHHHHhccceeEEEeeecccccchHHHHHHHHhCceEEEecCcce--
Confidence 4467776665443 122344556788888854 333 33222 22234446789999999999421
Q ss_pred CCCchhHHHH--HHHHHHHHHHHcCCCccEEEechhhhHHHH
Q psy12875 93 HPNGYADAGR--QILHLVDKINEEGVTFPVLGVCLGFELILQ 132 (308)
Q Consensus 93 ~~~~~~~~~~--~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~ 132 (308)
.+....+ .+.+.+++.+..| .-|-|+..|.-+|..
T Consensus 119 ---ri~~~lkdTpl~~~ir~r~r~G--~avgGTSAGAavM~~ 155 (293)
T COG4242 119 ---RIIGSLKDTPLMAAIRQRVRRG--IAVGGTSAGAAVMSD 155 (293)
T ss_pred ---eeeeeccCCHHHHHHHHHHhcC--ceecccccchhhcCC
Confidence 1222222 4667777777754 899999999887764
No 254
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=67.71 E-value=4.8 Score=39.42 Aligned_cols=26 Identities=15% Similarity=0.281 Sum_probs=20.7
Q ss_pred hhHhhh-cCCCCeeeeehhHHHHHHHh
Q psy12875 166 SQINEE-GVTFPVLGVCLGFELILQVS 191 (308)
Q Consensus 166 ~~i~~~-~~~~PilGiClG~Qll~~~~ 191 (308)
..+++. ...+|++|||-|+|+|++.+
T Consensus 313 ~~i~~~~~~g~~i~aiCgG~~~L~~~i 339 (451)
T PRK01077 313 ASIRAAAAAGKPIYAECGGLMYLGESL 339 (451)
T ss_pred HHHHHHHHcCCCEEEEcHHHHHHHhhh
Confidence 344443 56789999999999999976
No 255
>PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A.
Probab=67.45 E-value=4.2 Score=36.87 Aligned_cols=28 Identities=18% Similarity=0.366 Sum_probs=23.9
Q ss_pred EEEEEEecCCCEEEEeecCCccCcccCC
Q psy12875 274 FVSTVEHKEYPIVGIQFHPEKNAYEWTE 301 (308)
Q Consensus 274 ~v~ai~~~~~p~~GvQFHPE~~~~~~~~ 301 (308)
-|++|-..+..++|+..|||+....|--
T Consensus 208 ~IAGics~~GrvlglMpHPEr~~~~~~~ 235 (259)
T PF13507_consen 208 NIAGICSPDGRVLGLMPHPERAFEPWQW 235 (259)
T ss_dssp GEEEEE-TTSSEEEESSBCCGTTCCCCS
T ss_pred ceeEEEcCCCCEEEEcCChHHhCchhhc
Confidence 3889999999999999999999888754
No 256
>cd00887 MoeA MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.
Probab=67.24 E-value=30 Score=33.24 Aligned_cols=79 Identities=20% Similarity=0.200 Sum_probs=43.4
Q ss_pred hhcccCCCCEEEEeccccCCCCcccccCCCC-ccchHHHHHHHHHHcCCeEEEEEcC-CChhHH----HHhcCCCCEEEE
Q psy12875 11 STVTSTDTPVIGILAQEYTHIPSYVKAYPNY-TSYIAASYVKNIEAAGARVVPILIG-QDREYY----AEILTQINGVVI 84 (308)
Q Consensus 11 ~~~~~~~~P~IGI~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~l~~aG~~~~~i~~~-~~~~~~----~~~l~~~dGlil 84 (308)
..+.-..+|.|+|++.-..-.........+. .+.-...+..+|++.|+++.....- ++.+.+ .+.++.+|-||.
T Consensus 161 ~~v~V~~~~rv~ii~tGdEl~~~g~~~~~g~i~dsn~~~l~~~l~~~G~~~~~~~~v~Dd~~~i~~~l~~a~~~~Dliit 240 (394)
T cd00887 161 AEVPVYRRPRVAIISTGDELVEPGEPLAPGQIYDSNSYMLAALLRELGAEVVDLGIVPDDPEALREALEEALEEADVVIT 240 (394)
T ss_pred CEEEEecCCEEEEEeCCCcccCCCCCCCCCEEEEChHHHHHHHHHHCCCEEEEeceeCCCHHHHHHHHHHHhhCCCEEEE
Confidence 3344447899999977533210000001111 1112224556788999988766543 333333 334556899999
Q ss_pred cCCCC
Q psy12875 85 PGGGT 89 (308)
Q Consensus 85 pGG~~ 89 (308)
+||.+
T Consensus 241 tGG~s 245 (394)
T cd00887 241 SGGVS 245 (394)
T ss_pred eCCCC
Confidence 99863
No 257
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=66.32 E-value=4 Score=39.79 Aligned_cols=20 Identities=30% Similarity=0.516 Sum_probs=18.0
Q ss_pred cCCCCeeeeehhHHHHHHHh
Q psy12875 172 GVTFPVLGVCLGFELILQVS 191 (308)
Q Consensus 172 ~~~~PilGiClG~Qll~~~~ 191 (308)
....|++|+|-|+|+|++.+
T Consensus 306 ~~G~pi~aeCGG~q~L~~~i 325 (433)
T PRK13896 306 ADGLPVLGECGGLMALAESL 325 (433)
T ss_pred HCCCcEEEEehHHHHhhccc
Confidence 56789999999999999976
No 258
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=65.82 E-value=31 Score=27.53 Aligned_cols=42 Identities=19% Similarity=0.228 Sum_probs=28.4
Q ss_pred HHHHHHHHHcCCeEEEEEc-CCChhHH----HHhcCCCCEEEEcCCC
Q psy12875 47 ASYVKNIEAAGARVVPILI-GQDREYY----AEILTQINGVVIPGGG 88 (308)
Q Consensus 47 ~~~~~~l~~aG~~~~~i~~-~~~~~~~----~~~l~~~dGlilpGG~ 88 (308)
..+..++++.|.++..... .++.+.+ .+.++++|-|+.+||-
T Consensus 22 ~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~i~~~~~~~DlvittGG~ 68 (133)
T cd00758 22 PALEALLEDLGCEVIYAGVVPDDADSIRAALIEASREADLVLTTGGT 68 (133)
T ss_pred HHHHHHHHHCCCEEEEeeecCCCHHHHHHHHHHHHhcCCEEEECCCC
Confidence 3456788999998876643 3444433 3345678999999886
No 259
>COG4090 Uncharacterized protein conserved in archaea [Function unknown]
Probab=64.68 E-value=11 Score=30.46 Aligned_cols=54 Identities=19% Similarity=0.196 Sum_probs=33.0
Q ss_pred hcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHHhcCCcc
Q psy12875 75 ILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQVSNNDTD 139 (308)
Q Consensus 75 ~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~~~gg~~ 139 (308)
.+.++|.+++-||-+ -| .++....++.|++. ....+|+.|+|+ |-|... .|...
T Consensus 82 ~~n~aDvvVLlGGLa--MP--~~gv~~d~~kel~e----e~~~kkliGvCf--m~mF~r-agW~e 135 (154)
T COG4090 82 ELNSADVVVLLGGLA--MP--KIGVTPDDAKELLE----ELGNKKLIGVCF--MNMFER-AGWDE 135 (154)
T ss_pred ccccccEEEEEcccc--cC--cCCCCHHHHHHHHH----hcCCCceEEeeH--HHHHHH-cCcch
Confidence 366799999999953 23 24433334444443 224579999996 555555 56543
No 260
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=64.04 E-value=58 Score=29.24 Aligned_cols=74 Identities=23% Similarity=0.198 Sum_probs=45.5
Q ss_pred hhhhcccCCCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCC
Q psy12875 9 YISTVTSTDTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGG 88 (308)
Q Consensus 9 ~~~~~~~~~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~ 88 (308)
-|..++...+|.||+++-.... +..+........ ...+...|++. ..+..+....+ ...+++|.||+.|..
T Consensus 137 aI~~v~~~~~~~V~~l~ghge~-~~~~~~~~~~~~--~~~l~~~L~~~-y~V~~~~l~~~-----~IP~~~d~Lvi~~P~ 207 (271)
T PF09822_consen 137 AIRRVTSDEKPKVYFLTGHGER-GGGSMPNSQSTS--YSSLKSLLEKN-YDVEELNLANE-----EIPDDADVLVIAGPK 207 (271)
T ss_pred HHHHHhcccCceEEEEcccccc-ccccccccCcch--HHHHHHHHHhc-CceeecCCccc-----ccCCCCCEEEEECCC
Confidence 3466777789999999865543 000001111122 24667888888 88887765411 135789999999986
Q ss_pred CCC
Q psy12875 89 TGF 91 (308)
Q Consensus 89 ~~~ 91 (308)
.++
T Consensus 208 ~~l 210 (271)
T PF09822_consen 208 TDL 210 (271)
T ss_pred CCC
Confidence 433
No 261
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=63.71 E-value=38 Score=34.56 Aligned_cols=82 Identities=13% Similarity=0.121 Sum_probs=44.8
Q ss_pred hhcccCCCCEEEEeccccCCCCcccccCCCC-ccchHHHHHHHHHHcCCeEEEEEc-CCChhHHH----HhcCCCCEEEE
Q psy12875 11 STVTSTDTPVIGILAQEYTHIPSYVKAYPNY-TSYIAASYVKNIEAAGARVVPILI-GQDREYYA----EILTQINGVVI 84 (308)
Q Consensus 11 ~~~~~~~~P~IGI~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~l~~aG~~~~~i~~-~~~~~~~~----~~l~~~dGlil 84 (308)
..|.-..+|.|||++.-+.-........++. .+.-...+..+|++.|+++..... .++.+.+. +.++.+|-||.
T Consensus 360 ~~V~V~~~prV~IistGdEl~~~g~~~~~g~i~dsn~~~L~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~a~~~~DlIIt 439 (597)
T PRK14491 360 AEVPVFRRPKVAVFSTGDEVQAPGETLKPNCIYDSNRFTIKAMAKKLGCEVIDLGIIEDSEAALEATLEQAAAQADVVIS 439 (597)
T ss_pred CeEEeccCCEEEEEecCCeeccCCCcCCCCcEEeCCHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHhhhcCCEEEE
Confidence 4445556899999976543200000011110 111122456788999998876543 34444333 34467899999
Q ss_pred cCCCCCCCC
Q psy12875 85 PGGGTGFDH 93 (308)
Q Consensus 85 pGG~~~~~~ 93 (308)
+||. ...+
T Consensus 440 tGG~-s~G~ 447 (597)
T PRK14491 440 SGGV-SVGD 447 (597)
T ss_pred cCCc-cCCC
Confidence 9986 3444
No 262
>PRK14498 putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein; Provisional
Probab=63.68 E-value=35 Score=34.92 Aligned_cols=82 Identities=20% Similarity=0.228 Sum_probs=45.6
Q ss_pred hhcccCCCCEEEEeccccCCCCcccccCCCC-ccchHHHHHHHHHHcCCeEEEEEc-CCChhHHH----HhcCCCCEEEE
Q psy12875 11 STVTSTDTPVIGILAQEYTHIPSYVKAYPNY-TSYIAASYVKNIEAAGARVVPILI-GQDREYYA----EILTQINGVVI 84 (308)
Q Consensus 11 ~~~~~~~~P~IGI~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~l~~aG~~~~~i~~-~~~~~~~~----~~l~~~dGlil 84 (308)
..|.-..+|.|+|.+.-..-........++. .+.-...+..+|++.|+++..... .++.+.+. +.++.+|-||.
T Consensus 179 ~~v~v~~~prv~vi~tG~El~~~~~~~~~g~i~dsn~~~l~~~l~~~g~~~~~~~~v~Dd~~~i~~~l~~~~~~~D~iIt 258 (633)
T PRK14498 179 AEVPVYKKPRVGIISTGDELVEPGEPLKPGKIYDVNSYTLAAAVEEAGGEPVRYGIVPDDEEELEAALRKALKECDLVLL 258 (633)
T ss_pred CEEEEecCcEEEEEecCccccCCCCCCCCCEEEEChHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCEEEE
Confidence 4455557899999866532100000011111 111223456788999998876543 34444333 33457999999
Q ss_pred cCCCCCCCC
Q psy12875 85 PGGGTGFDH 93 (308)
Q Consensus 85 pGG~~~~~~ 93 (308)
+||. ...+
T Consensus 259 tGG~-s~g~ 266 (633)
T PRK14498 259 SGGT-SAGA 266 (633)
T ss_pred CCCC-cCCC
Confidence 9986 3444
No 263
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=62.61 E-value=16 Score=30.86 Aligned_cols=74 Identities=16% Similarity=0.166 Sum_probs=40.0
Q ss_pred cchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEE
Q psy12875 43 SYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLG 122 (308)
Q Consensus 43 ~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlG 122 (308)
..+.+.+.+.|+. |..+..++...... ..+.++|.||+-++- .++.....+.+++......-.++|++-
T Consensus 15 ~~iA~~Ia~~l~~-g~~v~~~~~~~~~~---~~l~~yD~vIlGspi-------~~G~~~~~~~~fl~~~~~~l~~K~v~~ 83 (177)
T PRK11104 15 RKIASYIASELKE-GIQCDVVNLHRIEE---PDLSDYDRVVIGASI-------RYGHFHSALYKFVKKHATQLNQMPSAF 83 (177)
T ss_pred HHHHHHHHHHhCC-CCeEEEEEhhhcCc---cCHHHCCEEEEECcc-------ccCCcCHHHHHHHHHHHHHhCCCeEEE
Confidence 3455666667766 77777776543211 146789998775542 122223334444433222113478888
Q ss_pred echhh
Q psy12875 123 VCLGF 127 (308)
Q Consensus 123 IC~G~ 127 (308)
.|-|+
T Consensus 84 F~v~l 88 (177)
T PRK11104 84 FSVNL 88 (177)
T ss_pred EEech
Confidence 88774
No 264
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=61.57 E-value=91 Score=28.80 Aligned_cols=65 Identities=17% Similarity=0.156 Sum_probs=40.8
Q ss_pred ccCCCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChhHH----HHhc-CCCCEEEEcCC
Q psy12875 14 TSTDTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYY----AEIL-TQINGVVIPGG 87 (308)
Q Consensus 14 ~~~~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~----~~~l-~~~dGlilpGG 87 (308)
....++.||+....... + +.+-+...+.+.+++.|..+.......+.+.. +..+ .++||||+.+.
T Consensus 21 ~~~~~~~Ig~i~~~~~~-~--------f~~~~~~gi~~~a~~~g~~l~i~~~~~~~~~~~~~i~~l~~~~vDGiIi~~~ 90 (330)
T PRK10355 21 AHAKEVKIGMAIDDLRL-E--------RWQKDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPY 90 (330)
T ss_pred ccCCCceEEEEecCCCc-h--------HHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 45568999999854332 1 11224457788888899998877654333222 2222 38999999754
No 265
>COG3155 ElbB Uncharacterized protein involved in an early stage of isoprenoid biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=61.00 E-value=16 Score=30.64 Aligned_cols=61 Identities=13% Similarity=0.316 Sum_probs=42.0
Q ss_pred cCCCCEEEEcCCCCCCCCCCchhH------HHHHHHHHHHHHHHcCCCccEEEechhhhHHHHHhcCCcc
Q psy12875 76 LTQINGVVIPGGGTGFDHPNGYAD------AGRQILHLVDKINEEGVTFPVLGVCLGFELILQVSNNDTD 139 (308)
Q Consensus 76 l~~~dGlilpGG~~~~~~~~~~~~------~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~~~gg~~ 139 (308)
.+.+|++++|||.-....-++|.- ...++..+++.+.+.| +|+-=||-..-++... +|-..
T Consensus 83 ~e~~DALivPGGFGAAKNLsdFA~kGaeC~v~pDv~al~~a~~~ag--KP~G~iCIaP~m~pki-~g~~~ 149 (217)
T COG3155 83 AEELDALIVPGGFGAAKNLSDFASKGAECSVDPDLKALAQAMHQAG--KPLGFMCIAPAMLPKI-FGFPL 149 (217)
T ss_pred HHhcceeeccCccchhhhhHHHhccCccceeCHHHHHHHHHHHHhC--CCceEEEecHHHHHHH-cCCce
Confidence 356899999999521111012211 1247888888888866 9999999999999988 77544
No 266
>PRK03094 hypothetical protein; Provisional
Probab=60.68 E-value=20 Score=26.32 Aligned_cols=36 Identities=17% Similarity=0.205 Sum_probs=27.3
Q ss_pred HHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCC
Q psy12875 48 SYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTG 90 (308)
Q Consensus 48 ~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~ 90 (308)
.+.++|++.|.+++.+.... ..+.+|+++++|-..+
T Consensus 12 ~i~~~L~~~GYeVv~l~~~~-------~~~~~Da~VitG~d~n 47 (80)
T PRK03094 12 DVQQALKQKGYEVVQLRSEQ-------DAQGCDCCVVTGQDSN 47 (80)
T ss_pred HHHHHHHHCCCEEEecCccc-------ccCCcCEEEEeCCCcc
Confidence 45789999999999775221 2578999999997543
No 267
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=60.23 E-value=56 Score=26.70 Aligned_cols=45 Identities=24% Similarity=0.351 Sum_probs=29.3
Q ss_pred HHHHHHHHcCCeEEEEEc-CCChhHHHH----hcC--CCCEEEEcCCCCCCCC
Q psy12875 48 SYVKNIEAAGARVVPILI-GQDREYYAE----ILT--QINGVVIPGGGTGFDH 93 (308)
Q Consensus 48 ~~~~~l~~aG~~~~~i~~-~~~~~~~~~----~l~--~~dGlilpGG~~~~~~ 93 (308)
.+..+|++.|+++..... .++.+.+.+ .++ .+|-|+.+||.+ ..+
T Consensus 24 ~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~~~DlVittGG~s-~g~ 75 (152)
T cd00886 24 ALVELLEEAGHEVVAYEIVPDDKDEIREALIEWADEDGVDLILTTGGTG-LAP 75 (152)
T ss_pred HHHHHHHHcCCeeeeEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcC-CCC
Confidence 456789999998776554 344444433 344 689999998863 443
No 268
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=60.04 E-value=33 Score=31.30 Aligned_cols=65 Identities=15% Similarity=0.218 Sum_probs=38.2
Q ss_pred HHHHHHHHHcCCeEEEEEcCCCh--------hHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCc
Q psy12875 47 ASYVKNIEAAGARVVPILIGQDR--------EYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTF 118 (308)
Q Consensus 47 ~~~~~~l~~aG~~~~~i~~~~~~--------~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~ 118 (308)
..+.+||++.|..+......... .......+.+|.++.-||. - -++..++.+.. ..+
T Consensus 3 ~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~iGGD--G-----------T~L~aa~~~~~--~~~ 67 (272)
T PRK02231 3 KNLFHWLKERGYQVLVEKEIAEQLNLPENHLASLEEIGQRAQLAIVIGGD--G-----------NMLGRARVLAK--YDI 67 (272)
T ss_pred HHHHHHHHHCCCEEEEecchhhhcCccccccCChHHhCcCCCEEEEECCc--H-----------HHHHHHHHhcc--CCC
Confidence 35677888889887754421110 0012233468999999983 1 23333444433 359
Q ss_pred cEEEechh
Q psy12875 119 PVLGVCLG 126 (308)
Q Consensus 119 PvlGIC~G 126 (308)
||+||-.|
T Consensus 68 PilgIn~G 75 (272)
T PRK02231 68 PLIGINRG 75 (272)
T ss_pred cEEEEeCC
Confidence 99999987
No 269
>COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]
Probab=58.43 E-value=29 Score=32.53 Aligned_cols=49 Identities=16% Similarity=0.224 Sum_probs=35.0
Q ss_pred CCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875 78 QINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQV 133 (308)
Q Consensus 78 ~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~ 133 (308)
.+|-+++.||...- .....+.+.++++++.+.| .++-|||-|--+|+.+
T Consensus 76 ~~~~v~v~~g~~~~-----~~~~~~~l~~~Lr~~~~~G--~~l~gictGaf~LA~a 124 (328)
T COG4977 76 PIDILPVCGGLGPE-----RPVNAPALLAWLRRAARRG--ARLGGLCTGAFVLAEA 124 (328)
T ss_pred cceEEEEecCCCcc-----cccchHHHHHHHHHHHhcC--CeEEEehHhHHHHHHh
Confidence 46777776664211 1112256889999988855 9999999999999987
No 270
>PF09075 STb_secrete: Heat-stable enterotoxin B, secretory; InterPro: IPR015160 Members of this family assume a helical secondary structure, with two alpha helices forming a disulphide cross-linked alpha-helical hairpin. The disulphide bonds are crucial for the toxic activity of the protein, and are required for maintenance of the tertiary structure, and subsequent interaction with the particulate form of guanylate cyclase, increasing cyclic GMP levels within the host intestinal epithelial cells []. ; PDB: 1EHS_A.
Probab=58.21 E-value=2.9 Score=26.15 Aligned_cols=16 Identities=19% Similarity=0.677 Sum_probs=10.6
Q ss_pred eeeeehhHHHHHHHhC
Q psy12875 177 VLGVCLGFELILQVSN 192 (308)
Q Consensus 177 ilGiClG~Qll~~~~G 192 (308)
..|.|+|.|+|-.+-|
T Consensus 32 tagacfgaqimvaakg 47 (48)
T PF09075_consen 32 TAGACFGAQIMVAAKG 47 (48)
T ss_dssp S--TTTTTHHHHTTT-
T ss_pred ccccccchhhhhhccc
Confidence 3588999999976644
No 271
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=58.01 E-value=1e+02 Score=26.80 Aligned_cols=43 Identities=14% Similarity=0.117 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHcCCeEEEEEcCCChhH----HHH-hcCCCCEEEEcCC
Q psy12875 45 IAASYVKNIEAAGARVVPILIGQDREY----YAE-ILTQINGVVIPGG 87 (308)
Q Consensus 45 i~~~~~~~l~~aG~~~~~i~~~~~~~~----~~~-~l~~~dGlilpGG 87 (308)
+...+.+.+++.|..++......+.+. ++. .-.++||+|+.+.
T Consensus 17 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 64 (273)
T cd06292 17 FAEAIEAALAQYGYTVLLCNTYRGGVSEADYVEDLLARGVRGVVFISS 64 (273)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEeCC
Confidence 456778888899999877665433321 122 1247999999664
No 272
>COG4285 Uncharacterized conserved protein [Function unknown]
Probab=57.56 E-value=16 Score=32.12 Aligned_cols=73 Identities=22% Similarity=0.362 Sum_probs=41.2
Q ss_pred cCCCCEEEEcCCCCCCCCCCchhHHHHHH-HHHHHHHHHcCCCccEEEechhhhHHHHHhcCCcccc--cccccc-cccc
Q psy12875 76 LTQINGVVIPGGGTGFDHPNGYADAGRQI-LHLVDKINEEGVTFPVLGVCLGFELILQVSNNDTDFR--KSCKVQ-QVNL 151 (308)
Q Consensus 76 l~~~dGlilpGG~~~~~~~~~~~~~~~~~-~e~~~~~~~~g~~~PvlGIC~G~Qll~~~~~gg~~~~--~~~~~~-~~~~ 151 (308)
.+.-..+++|||. |+ .|-+....+ ...+....++| =-.||||.|- ++|+..+. ...+.+ ..++
T Consensus 47 ~~~T~lLV~pGGa-Dl----pY~~~l~g~g~a~i~~yvk~G--G~fLGiCAG~------YFg~~~veF~~p~~~~vvgkR 113 (253)
T COG4285 47 EETTLLLVFPGGA-DL----PYVQVLQGLGTARIKNYVKEG--GNFLGICAGG------YFGSAYVEFAEPTGIEVVGKR 113 (253)
T ss_pred hhceEEEEecCCC-Cc----hHHHHhcchhhhhHHHHHhcC--CeEEEEeccc------cccceEEEEecCCCceeeecc
Confidence 3455779999996 43 255544433 34455566644 6799999985 26665431 111111 1134
Q ss_pred ceeeecCCCC
Q psy12875 152 NLKFLPGAKR 161 (308)
Q Consensus 152 ~l~~~pg~~~ 161 (308)
.|.+.||..+
T Consensus 114 dL~fFpGT~~ 123 (253)
T COG4285 114 DLGFFPGTAR 123 (253)
T ss_pred cccccCCccC
Confidence 5777777665
No 273
>COG3442 Predicted glutamine amidotransferase [General function prediction only]
Probab=57.42 E-value=5.6 Score=34.99 Aligned_cols=21 Identities=33% Similarity=0.494 Sum_probs=18.3
Q ss_pred hcCCCCeeeeehhHHHHHHHh
Q psy12875 171 EGVTFPVLGVCLGFELILQVS 191 (308)
Q Consensus 171 ~~~~~PilGiClG~Qll~~~~ 191 (308)
....+|++.||-|+|+|.+.+
T Consensus 84 i~~g~p~laiCgg~QlLG~yY 104 (250)
T COG3442 84 IENGKPVLAICGGYQLLGQYY 104 (250)
T ss_pred HhcCCcEEEEccchhhcccee
Confidence 466899999999999999954
No 274
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=56.24 E-value=44 Score=28.07 Aligned_cols=74 Identities=20% Similarity=0.181 Sum_probs=49.3
Q ss_pred chHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEe
Q psy12875 44 YIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGV 123 (308)
Q Consensus 44 ~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGI 123 (308)
-|.+.+...|++.|.++.+.+...-.+ -.++++|++|+--+ + .|+...+.+.++++...+.=..+|..-+
T Consensus 16 kIA~~iA~~L~e~g~qvdi~dl~~~~~---~~l~~ydavVIgAs---I----~~~h~~~~~~~Fv~k~~e~L~~kP~A~f 85 (175)
T COG4635 16 KIAEYIASHLRESGIQVDIQDLHAVEE---PALEDYDAVVIGAS---I----RYGHFHEAVQSFVKKHAEALSTKPSAFF 85 (175)
T ss_pred HHHHHHHHHhhhcCCeeeeeehhhhhc---cChhhCceEEEecc---h----hhhhhHHHHHHHHHHHHHHHhcCCceEE
Confidence 466677889999999999887543211 15789999998543 2 3666666666666433322134899988
Q ss_pred chhh
Q psy12875 124 CLGF 127 (308)
Q Consensus 124 C~G~ 127 (308)
|.+.
T Consensus 86 ~vnl 89 (175)
T COG4635 86 SVNL 89 (175)
T ss_pred Eeeh
Confidence 8765
No 275
>PLN02929 NADH kinase
Probab=55.98 E-value=34 Score=31.73 Aligned_cols=61 Identities=18% Similarity=0.182 Sum_probs=39.5
Q ss_pred HHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechh
Q psy12875 47 ASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLG 126 (308)
Q Consensus 47 ~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G 126 (308)
....++|++.|.++..+.- .++...+..+|.+|.-||. - . ++..++.+ . ..+||+||-.|
T Consensus 37 ~~~~~~L~~~gi~~~~v~r----~~~~~~~~~~Dlvi~lGGD--G----T-------~L~aa~~~-~--~~iPvlGIN~G 96 (301)
T PLN02929 37 NFCKDILQQKSVDWECVLR----NELSQPIRDVDLVVAVGGD--G----T-------LLQASHFL-D--DSIPVLGVNSD 96 (301)
T ss_pred HHHHHHHHHcCCEEEEeec----cccccccCCCCEEEEECCc--H----H-------HHHHHHHc-C--CCCcEEEEECC
Confidence 4567889999998855431 1122346788999999993 1 1 23333333 3 45999999998
Q ss_pred h
Q psy12875 127 F 127 (308)
Q Consensus 127 ~ 127 (308)
.
T Consensus 97 p 97 (301)
T PLN02929 97 P 97 (301)
T ss_pred C
Confidence 3
No 276
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=55.66 E-value=51 Score=30.30 Aligned_cols=83 Identities=17% Similarity=0.129 Sum_probs=47.4
Q ss_pred EEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCCh--------hHHHHhcCCCCEEEEcCCCCCC
Q psy12875 20 VIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDR--------EYYAEILTQINGVVIPGGGTGF 91 (308)
Q Consensus 20 ~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~--------~~~~~~l~~~dGlilpGG~~~~ 91 (308)
.|||....... ...-+...+.++|++.|..+......... ...+...+.+|.+|.-||. -
T Consensus 7 ~v~iv~~~~~~----------~~~e~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~GGD--G 74 (291)
T PRK02155 7 TVALIGRYQTP----------GIAEPLESLAAFLAKRGFEVVFEADTARNIGLTGYPALTPEEIGARADLAVVLGGD--G 74 (291)
T ss_pred EEEEEecCCCH----------HHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccChhHhccCCCEEEEECCc--H
Confidence 48887665432 11123456788999999886654311100 0012223468999999883 1
Q ss_pred CCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhh
Q psy12875 92 DHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGF 127 (308)
Q Consensus 92 ~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~ 127 (308)
-+++.++.... .++|+|||-.|.
T Consensus 75 -----------t~l~~~~~~~~--~~~pilGIn~G~ 97 (291)
T PRK02155 75 -----------TMLGIGRQLAP--YGVPLIGINHGR 97 (291)
T ss_pred -----------HHHHHHHHhcC--CCCCEEEEcCCC
Confidence 23344444433 358999999886
No 277
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=55.25 E-value=26 Score=28.36 Aligned_cols=39 Identities=18% Similarity=0.115 Sum_probs=25.3
Q ss_pred CCCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEc
Q psy12875 16 TDTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILI 65 (308)
Q Consensus 16 ~~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~ 65 (308)
..||+|||.+--... .+.-|. .-.+||+++|++.+..-.
T Consensus 89 ~~k~vIgvVTK~DLa----------ed~dI~-~~~~~L~eaGa~~IF~~s 127 (148)
T COG4917 89 GVKKVIGVVTKADLA----------EDADIS-LVKRWLREAGAEPIFETS 127 (148)
T ss_pred cccceEEEEeccccc----------chHhHH-HHHHHHHHcCCcceEEEe
Confidence 357899998875432 123343 346899999988775543
No 278
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=54.41 E-value=42 Score=30.88 Aligned_cols=82 Identities=16% Similarity=0.129 Sum_probs=48.2
Q ss_pred EEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCCh-----hHHHHhcCCCCEEEEcCCCCCCCCC
Q psy12875 20 VIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDR-----EYYAEILTQINGVVIPGGGTGFDHP 94 (308)
Q Consensus 20 ~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~-----~~~~~~l~~~dGlilpGG~~~~~~~ 94 (308)
.|||...+... ..-+...+.++|++.|..+...+..... .......+++|-++.-||. -
T Consensus 12 ~i~ii~~~~~~-----------~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~iGGD--G--- 75 (287)
T PRK14077 12 KIGLVTRPNVS-----------LDKEILKLQKILSIYKVEILLEKESAEILDLPGYGLDELFKISDFLISLGGD--G--- 75 (287)
T ss_pred EEEEEeCCcHH-----------HHHHHHHHHHHHHHCCCEEEEecchhhhhcccccchhhcccCCCEEEEECCC--H---
Confidence 58888775421 1223456788898889887765421110 0011223468999999983 1
Q ss_pred CchhHHHHHHHHHHHHHHHcCCCccEEEechhh
Q psy12875 95 NGYADAGRQILHLVDKINEEGVTFPVLGVCLGF 127 (308)
Q Consensus 95 ~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~ 127 (308)
-++..++.+.. ..+||+||-.|.
T Consensus 76 --------T~L~aa~~~~~--~~~PilGIN~G~ 98 (287)
T PRK14077 76 --------TLISLCRKAAE--YDKFVLGIHAGH 98 (287)
T ss_pred --------HHHHHHHHhcC--CCCcEEEEeCCC
Confidence 23344444443 359999999886
No 279
>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP.
Probab=54.38 E-value=10 Score=41.85 Aligned_cols=33 Identities=15% Similarity=0.009 Sum_probs=25.2
Q ss_pred cCCCceEEEEEEecCCCEEEEeecCCccCcccC
Q psy12875 268 KYKSWEFVSTVEHKEYPIVGIQFHPEKNAYEWT 300 (308)
Q Consensus 268 ~~~~~~~v~ai~~~~~p~~GvQFHPE~~~~~~~ 300 (308)
+++...-|++|-..+.+++|..=||||....+-
T Consensus 1188 PNGS~~~IaGi~s~dGrvlg~MpHpER~~~~~~ 1220 (1239)
T TIGR01857 1188 PNGSSLAIEGITSPDGRIFGKMGHSERYGDGLF 1220 (1239)
T ss_pred CCCChhhhhEeECCCCCEEEECCCcccccCccc
Confidence 344433488999999999999999999876543
No 280
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=53.51 E-value=93 Score=25.53 Aligned_cols=78 Identities=9% Similarity=0.038 Sum_probs=48.8
Q ss_pred CCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChhHHHHh--cCCCCEEEEcCCCCCCCCC
Q psy12875 17 DTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEI--LTQINGVVIPGGGTGFDHP 94 (308)
Q Consensus 17 ~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~--l~~~dGlilpGG~~~~~~~ 94 (308)
.||.|-|...-.+ +++.=. .-..++|+.+|++++......++++.-.. -++.|.|.+++=. -
T Consensus 11 ~rprvlvak~GlD----------gHd~ga-kvia~~l~d~GfeVi~~g~~~tp~e~v~aA~~~dv~vIgvSsl~----g- 74 (143)
T COG2185 11 ARPRVLVAKLGLD----------GHDRGA-KVIARALADAGFEVINLGLFQTPEEAVRAAVEEDVDVIGVSSLD----G- 74 (143)
T ss_pred CCceEEEeccCcc----------ccccch-HHHHHHHHhCCceEEecCCcCCHHHHHHHHHhcCCCEEEEEecc----c-
Confidence 6788877655421 222111 12357899999999988888777765442 3578999997632 1
Q ss_pred CchhHHHHHHHHHHHHH
Q psy12875 95 NGYADAGRQILHLVDKI 111 (308)
Q Consensus 95 ~~~~~~~~~~~e~~~~~ 111 (308)
.+......+.|.++++
T Consensus 75 -~h~~l~~~lve~lre~ 90 (143)
T COG2185 75 -GHLTLVPGLVEALREA 90 (143)
T ss_pred -hHHHHHHHHHHHHHHh
Confidence 2555555666666553
No 281
>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit.
Probab=53.25 E-value=12 Score=41.55 Aligned_cols=28 Identities=14% Similarity=0.248 Sum_probs=23.9
Q ss_pred EEEEEEecCCCEEEEeecCCccCcccCC
Q psy12875 274 FVSTVEHKEYPIVGIQFHPEKNAYEWTE 301 (308)
Q Consensus 274 ~v~ai~~~~~p~~GvQFHPE~~~~~~~~ 301 (308)
-|++|-..+.+++|...|||+....|--
T Consensus 1259 ~IaGi~s~dGrvl~~MpHPEr~~~~~q~ 1286 (1310)
T TIGR01735 1259 GIAGITSCDGRVTIMMPHPERVFRAWQN 1286 (1310)
T ss_pred cceEeECCCCCEEEEcCCHHHhhhHhhC
Confidence 3889999999999999999999776654
No 282
>KOG1559|consensus
Probab=51.76 E-value=6.7 Score=35.06 Aligned_cols=20 Identities=55% Similarity=1.162 Sum_probs=17.6
Q ss_pred cCCCCeeeeehhHHHHHHHh
Q psy12875 172 GVTFPVLGVCLGFELILQVS 191 (308)
Q Consensus 172 ~~~~PilGiClG~Qll~~~~ 191 (308)
+.++|+.|+|||+.+|...-
T Consensus 145 GehFPvyg~CLGFE~lsmiI 164 (340)
T KOG1559|consen 145 GEHFPVYGICLGFELLSMII 164 (340)
T ss_pred ccccchhhhhhhHHHHHHHH
Confidence 45899999999999999864
No 283
>TIGR03521 GldG gliding-associated putative ABC transporter substrate-binding component GldG. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldG is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldG abolish the gliding phenotype. GldG, along with GldA and GldF are believed to compose an ABC transporter and are observed as an operon. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=51.65 E-value=75 Score=32.02 Aligned_cols=86 Identities=15% Similarity=0.158 Sum_probs=50.9
Q ss_pred hhhhcccCCCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCC---ChhHHHHhcCCCCEEEEc
Q psy12875 9 YISTVTSTDTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQ---DREYYAEILTQINGVVIP 85 (308)
Q Consensus 9 ~~~~~~~~~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~---~~~~~~~~l~~~dGlilp 85 (308)
.|..|+...+|+||+++..... + . .. ...+.+.|+ .+..+..+.... ......+.|+++|.+++.
T Consensus 174 aI~~v~~~~~~~V~~l~ghGE~----~---~--~~--~~~l~~~L~-~~y~v~~l~l~~~~~~~~~ip~~l~d~d~LvI~ 241 (552)
T TIGR03521 174 AISKLINPREKRIAVLKGNGEL----A---D--LQ--IADLVSTLK-EYYFIAPFTLDSVAANPAKTLADLKKFDLIVIA 241 (552)
T ss_pred HHHHHhCccCceEEEEeCCCCC----C---h--HH--HHHHHHHHH-hcCceeeecchhcccCcccccccccCcCEEEEe
Confidence 3566777789999999875432 0 0 00 135566777 677777666532 111233345689999999
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHHHHHHcC
Q psy12875 86 GGGTGFDHPNGYADAGRQILHLVDKINEEG 115 (308)
Q Consensus 86 GG~~~~~~~~~~~~~~~~~~e~~~~~~~~g 115 (308)
|...++.+ .....+.+++.+|
T Consensus 242 ~P~~~ls~---------~e~~~Ldqfl~~G 262 (552)
T TIGR03521 242 KPTEAFSE---------REKYILDQYIMNG 262 (552)
T ss_pred CCCccCCH---------HHHHHHHHHHHcC
Confidence 87543322 3344455666655
No 284
>PRK09417 mogA molybdenum cofactor biosynthesis protein MogA; Provisional
Probab=50.93 E-value=1.6e+02 Score=25.32 Aligned_cols=70 Identities=19% Similarity=0.216 Sum_probs=36.6
Q ss_pred CCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCe---EEEEEcCCChhHH----HHhcC--CCCEEEEcCC
Q psy12875 17 DTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGAR---VVPILIGQDREYY----AEILT--QINGVVIPGG 87 (308)
Q Consensus 17 ~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~---~~~i~~~~~~~~~----~~~l~--~~dGlilpGG 87 (308)
.++.++|++..+.. ..+...+--...+..+|++.|.. +......++.+.+ .+.++ .+|-||.+||
T Consensus 2 ~~~~~aIItvSd~~------~~G~i~D~ng~~L~~~L~~~G~~g~~v~~~iVpDd~~~I~~aL~~a~~~~~~DlIITTGG 75 (193)
T PRK09417 2 DTLKIGLVSISDRA------SSGVYEDKGIPALEEWLASALTSPFEIETRLIPDEQDLIEQTLIELVDEMGCDLVLTTGG 75 (193)
T ss_pred CCcEEEEEEEcCcC------CCCceeechHHHHHHHHHHcCCCCceEEEEECCCCHHHHHHHHHHHhhcCCCCEEEECCC
Confidence 45778888764432 01111111122456778888643 3222334444433 33343 6899999988
Q ss_pred CCCCCC
Q psy12875 88 GTGFDH 93 (308)
Q Consensus 88 ~~~~~~ 93 (308)
. .+.+
T Consensus 76 t-g~g~ 80 (193)
T PRK09417 76 T-GPAR 80 (193)
T ss_pred C-CCCC
Confidence 6 4555
No 285
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=50.79 E-value=45 Score=28.04 Aligned_cols=41 Identities=17% Similarity=0.239 Sum_probs=27.5
Q ss_pred HHHHHHHHcCCeEEEEEcC-CChhH----HHHhcCCCCEEEEcCCC
Q psy12875 48 SYVKNIEAAGARVVPILIG-QDREY----YAEILTQINGVVIPGGG 88 (308)
Q Consensus 48 ~~~~~l~~aG~~~~~i~~~-~~~~~----~~~~l~~~dGlilpGG~ 88 (308)
.+.++|++.|.++..+..- ++.+. +...++.+|-||.+||-
T Consensus 23 ~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~dlVIttGG~ 68 (170)
T cd00885 23 FLAKELAELGIEVYRVTVVGDDEDRIAEALRRASERADLVITTGGL 68 (170)
T ss_pred HHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhCCCEEEECCCC
Confidence 4567889999988755433 33333 33345678999999885
No 286
>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional
Probab=50.54 E-value=13 Score=41.41 Aligned_cols=28 Identities=11% Similarity=0.064 Sum_probs=24.3
Q ss_pred EEEEEEecCCCEEEEeecCCccCcccCC
Q psy12875 274 FVSTVEHKEYPIVGIQFHPEKNAYEWTE 301 (308)
Q Consensus 274 ~v~ai~~~~~p~~GvQFHPE~~~~~~~~ 301 (308)
-|++|-..+.+++|...|||+....|--
T Consensus 1238 ~IaGi~s~dGrvlglMpHPEr~~~~~q~ 1265 (1290)
T PRK05297 1238 GITGLTTADGRVTIMMPHPERVFRTVQN 1265 (1290)
T ss_pred cceEeECCCCCEEEEcCChHHhcchhhc
Confidence 4889999999999999999999887754
No 287
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=50.54 E-value=64 Score=29.75 Aligned_cols=83 Identities=16% Similarity=0.126 Sum_probs=48.0
Q ss_pred EEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCCh------h--HHHHhcCCCCEEEEcCCCCCC
Q psy12875 20 VIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDR------E--YYAEILTQINGVVIPGGGTGF 91 (308)
Q Consensus 20 ~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~------~--~~~~~l~~~dGlilpGG~~~~ 91 (308)
.|||...+... ....+.+.+.++|++.|.++......... . ......+.+|-++.-||. -
T Consensus 6 ~v~iv~~~~k~----------~a~e~~~~i~~~L~~~giev~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~GGD--G 73 (295)
T PRK01231 6 NIGLIGRLGSS----------SVVETLRRLKDFLLDRGLEVILDEETAEVLPGHGLQTVSRKLLGEVCDLVIVVGGD--G 73 (295)
T ss_pred EEEEEecCCCH----------HHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcccCCCEEEEEeCc--H
Confidence 58887665432 12234567788999999887765421100 0 011122358888888883 1
Q ss_pred CCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhh
Q psy12875 92 DHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGF 127 (308)
Q Consensus 92 ~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~ 127 (308)
-+++.++.+.. .++||+||-.|.
T Consensus 74 -----------t~l~~~~~~~~--~~~Pvlgin~G~ 96 (295)
T PRK01231 74 -----------SLLGAARALAR--HNVPVLGINRGR 96 (295)
T ss_pred -----------HHHHHHHHhcC--CCCCEEEEeCCc
Confidence 22333343333 459999999875
No 288
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=50.30 E-value=45 Score=26.51 Aligned_cols=42 Identities=24% Similarity=0.348 Sum_probs=27.3
Q ss_pred HHHHHHHHcCCeEEEEEc-CCChhHH----HHhcCCCCEEEEcCCCC
Q psy12875 48 SYVKNIEAAGARVVPILI-GQDREYY----AEILTQINGVVIPGGGT 89 (308)
Q Consensus 48 ~~~~~l~~aG~~~~~i~~-~~~~~~~----~~~l~~~dGlilpGG~~ 89 (308)
.+.++|++.|+++..... .++.+.+ .+.++.+|-|+.+||.+
T Consensus 22 ~l~~~l~~~G~~~~~~~~v~Dd~~~I~~~l~~~~~~~dliittGG~g 68 (135)
T smart00852 22 ALAELLTELGIEVTRYVIVPDDKEAIKEALREALERADLVITTGGTG 68 (135)
T ss_pred HHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHHhCCCEEEEcCCCC
Confidence 456789999988754433 2343333 33446789999998863
No 289
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=50.29 E-value=1.1e+02 Score=28.08 Aligned_cols=105 Identities=16% Similarity=0.202 Sum_probs=60.6
Q ss_pred CCCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChhHHHHh----cCCCCEEEEcCCCCCC
Q psy12875 16 TDTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEI----LTQINGVVIPGGGTGF 91 (308)
Q Consensus 16 ~~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~----l~~~dGlilpGG~~~~ 91 (308)
..||+|+|+.--.+.. +. +.+....-+....++-++..|..+.+-....+++.+... +...-|++-++-..+.
T Consensus 159 ~~rq~vAVlVGg~nk~--f~-~~~d~a~q~~~~l~k~l~~~g~~~lisfSRRTp~~~~s~l~~~l~s~~~i~w~~~d~g~ 235 (329)
T COG3660 159 LPRQRVAVLVGGNNKA--FV-FQEDKAHQFASLLVKILENQGGSFLISFSRRTPDTVKSILKNNLNSSPGIVWNNEDTGY 235 (329)
T ss_pred CCCceEEEEecCCCCC--Cc-cCHHHHHHHHHHHHHHHHhCCceEEEEeecCCcHHHHHHHHhccccCceeEeCCCCCCC
Confidence 3478899886654431 11 111111234567889999999887766555666655543 4557888888863333
Q ss_pred CCCCchhHHH------HHHHHHHHHHHHcCCCccEEEech
Q psy12875 92 DHPNGYADAG------RQILHLVDKINEEGVTFPVLGVCL 125 (308)
Q Consensus 92 ~~~~~~~~~~------~~~~e~~~~~~~~g~~~PvlGIC~ 125 (308)
+|.-+|..+. .|-+....++...| +||+..|.
T Consensus 236 NPY~~~La~Adyii~TaDSinM~sEAasTg--kPv~~~~~ 273 (329)
T COG3660 236 NPYIDMLAAADYIISTADSINMCSEAASTG--KPVFILEP 273 (329)
T ss_pred CchHHHHhhcceEEEecchhhhhHHHhccC--CCeEEEec
Confidence 4421222222 24445556666644 88887775
No 290
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=50.09 E-value=8 Score=33.70 Aligned_cols=19 Identities=11% Similarity=0.024 Sum_probs=16.8
Q ss_pred cCCCCeeeeehhHHHHHHH
Q psy12875 172 GVTFPVLGVCLGFELILQV 190 (308)
Q Consensus 172 ~~~~PilGiClG~Qll~~~ 190 (308)
.++.|++|+|.|+|++...
T Consensus 112 ~~g~~i~G~SAGa~i~~~~ 130 (212)
T cd03146 112 ERGVVYIGWSAGSNCWFPS 130 (212)
T ss_pred HCCCEEEEECHhHHhhCCC
Confidence 4679999999999999984
No 291
>COG0521 MoaB Molybdopterin biosynthesis enzymes [Coenzyme metabolism]
Probab=49.83 E-value=1.2e+02 Score=25.62 Aligned_cols=67 Identities=19% Similarity=0.330 Sum_probs=36.4
Q ss_pred EEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEE-cCCChhHHH----HhcCC-CCEEEEcCCCCCCCC
Q psy12875 20 VIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPIL-IGQDREYYA----EILTQ-INGVVIPGGGTGFDH 93 (308)
Q Consensus 20 ~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~-~~~~~~~~~----~~l~~-~dGlilpGG~~~~~~ 93 (308)
.++|++-.+.+. . ..+.+--...+.++|+++|.++.... ..++.+.+. ...+. +|.|+.+||- -+.+
T Consensus 9 ~~~VvTVSd~r~---~---~~~~D~sG~~l~~~L~~ag~~~~~~~iV~D~~~~I~~~l~~~~~~~~DvvlttGGT-G~t~ 81 (169)
T COG0521 9 RIAVVTVSDRRS---T---GEYEDKSGPLLVELLEEAGHNVAAYTIVPDDKEQIRATLIALIDEDVDVVLTTGGT-GITP 81 (169)
T ss_pred eEEEEEEecccc---c---CCccccchhHHHHHHHHcCCccceEEEeCCCHHHHHHHHHHHhcCCCCEEEEcCCc-cCCC
Confidence 377777655430 0 11101123456889999998773222 233333332 22333 8999999986 4444
No 292
>PRK06852 aldolase; Validated
Probab=49.69 E-value=95 Score=28.86 Aligned_cols=57 Identities=21% Similarity=0.264 Sum_probs=39.0
Q ss_pred HHHHHHcCCeEEEEEcC-----CChhHHHHhcCCC--CEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHH-cC
Q psy12875 50 VKNIEAAGARVVPILIG-----QDREYYAEILTQI--NGVVIPGGGTGFDHPNGYADAGRQILHLVDKINE-EG 115 (308)
Q Consensus 50 ~~~l~~aG~~~~~i~~~-----~~~~~~~~~l~~~--dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~-~g 115 (308)
.+.-.+.|+.++-+.|. .+.+.+++..+.+ -.|++.||+. .+ .+++++.++++++ .|
T Consensus 194 aRiaaELGADIVKv~y~~~~~~g~~e~f~~vv~~~g~vpVviaGG~k-~~--------~~e~L~~v~~ai~~aG 258 (304)
T PRK06852 194 AGVAACLGADFVKVNYPKKEGANPAELFKEAVLAAGRTKVVCAGGSS-TD--------PEEFLKQLYEQIHISG 258 (304)
T ss_pred HHHHHHHcCCEEEecCCCcCCCCCHHHHHHHHHhCCCCcEEEeCCCC-CC--------HHHHHHHHHHHHHHcC
Confidence 34556789999999987 4556676665555 4689999973 11 2467777777766 55
No 293
>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional
Probab=48.85 E-value=14 Score=41.11 Aligned_cols=28 Identities=14% Similarity=0.208 Sum_probs=24.2
Q ss_pred EEEEEEecCCCEEEEeecCCccCcccCC
Q psy12875 274 FVSTVEHKEYPIVGIQFHPEKNAYEWTE 301 (308)
Q Consensus 274 ~v~ai~~~~~p~~GvQFHPE~~~~~~~~ 301 (308)
-|++|-..+.+++|...|||+....|--
T Consensus 1251 ~IAGi~s~dGRvlgmMpHPER~~~~~q~ 1278 (1307)
T PLN03206 1251 GIAALCSPDGRHLAMMPHPERCFLMWQF 1278 (1307)
T ss_pred hceeeECCCCCEEEEcCCHHHhhhhhhC
Confidence 4889999999999999999999777643
No 294
>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=48.34 E-value=15 Score=30.88 Aligned_cols=26 Identities=15% Similarity=0.378 Sum_probs=20.6
Q ss_pred hhhHhhh-cCCCCeeeeehhHHHHHHH
Q psy12875 165 FSQINEE-GVTFPVLGVCLGFELILQV 190 (308)
Q Consensus 165 ~~~i~~~-~~~~PilGiClG~Qll~~~ 190 (308)
...+++. ...+|+.|||.|.++|+.+
T Consensus 98 ~~~l~~~~~~~k~i~~ic~G~~~La~a 124 (180)
T cd03169 98 LAIVRHFAEANKPVAAICHGPQILAAA 124 (180)
T ss_pred HHHHHHHHHcCCEEEEECcHHHHHHHc
Confidence 3455543 5688999999999999986
No 295
>PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length. It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A.
Probab=47.01 E-value=41 Score=25.47 Aligned_cols=55 Identities=18% Similarity=0.263 Sum_probs=28.3
Q ss_pred CeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhh
Q psy12875 58 ARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGF 127 (308)
Q Consensus 58 ~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~ 127 (308)
...++.+-+..+.........+.+||++||.. + .+.+.+.+++ .++||+.+=...
T Consensus 41 ~~lvIt~gdR~di~~~a~~~~i~~iIltg~~~---~-------~~~v~~la~~-----~~i~vi~t~~dt 95 (105)
T PF07085_consen 41 GDLVITPGDREDIQLAAIEAGIACIILTGGLE---P-------SEEVLELAKE-----LGIPVISTPYDT 95 (105)
T ss_dssp TEEEEEETT-HHHHHHHCCTTECEEEEETT--------------HHHHHHHHH-----HT-EEEE-SS-H
T ss_pred CeEEEEeCCcHHHHHHHHHhCCCEEEEeCCCC---C-------CHHHHHHHHH-----CCCEEEEECCCH
Confidence 44555554443333344566789999999851 1 2355555544 248998765443
No 296
>PLN02699 Bifunctional molybdopterin adenylyltransferase/molybdopterin molybdenumtransferase
Probab=46.43 E-value=2.9e+02 Score=28.59 Aligned_cols=37 Identities=27% Similarity=0.485 Sum_probs=22.1
Q ss_pred CCeEEEEEc-CCChhHHHH----h--cCCCCEEEEcCCCCCCCCC
Q psy12875 57 GARVVPILI-GQDREYYAE----I--LTQINGVVIPGGGTGFDHP 94 (308)
Q Consensus 57 G~~~~~i~~-~~~~~~~~~----~--l~~~dGlilpGG~~~~~~~ 94 (308)
|+++..... .++.+.+.+ . .+.+|-||.+||. .+.+.
T Consensus 496 G~~v~~~~iv~Dd~~~I~~~l~~~~~~~~~DlVItTGGt-s~g~~ 539 (659)
T PLN02699 496 GAKVVATAVVPDDVEKIKDVLQKWSDIDRMDLILTLGGT-GFTPR 539 (659)
T ss_pred CcEEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCc-cCCCC
Confidence 888765543 344443333 2 2468999999886 45553
No 297
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=46.00 E-value=2.2e+02 Score=25.37 Aligned_cols=61 Identities=10% Similarity=0.156 Sum_probs=35.5
Q ss_pred CCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChhHH----HHh-cCCCCEEEEcCC
Q psy12875 18 TPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYY----AEI-LTQINGVVIPGG 87 (308)
Q Consensus 18 ~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~----~~~-l~~~dGlilpGG 87 (308)
+-.||+....... + +..-+-..+.+.+++.|..++......+.+.. +.. -.++||+++.+.
T Consensus 26 ~~~I~vi~~~~~~-~--------f~~~~~~~i~~~~~~~G~~~~~~~~~~d~~~~~~~~~~l~~~~~dgiii~~~ 91 (295)
T PRK10653 26 KDTIALVVSTLNN-P--------FFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPT 91 (295)
T ss_pred CCeEEEEecCCCC-h--------HHHHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 5789988642211 1 11234456778888899988776443333221 222 247999998653
No 298
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=45.78 E-value=1.8e+02 Score=25.16 Aligned_cols=43 Identities=21% Similarity=0.277 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHcCCeEEEEEcCCChhHHHH-----hcCCCCEEEEcCC
Q psy12875 45 IAASYVKNIEAAGARVVPILIGQDREYYAE-----ILTQINGVVIPGG 87 (308)
Q Consensus 45 i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~-----~l~~~dGlilpGG 87 (308)
+...+.+++++.|..+.......+.+...+ .-.++|||++.+.
T Consensus 17 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 64 (264)
T cd06274 17 IAKRLEALARERGYQLLIACSDDDPETERETVETLIARQVDALIVAGS 64 (264)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 445667788889999887766544332211 2347999999765
No 299
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=44.91 E-value=1.6e+02 Score=25.22 Aligned_cols=27 Identities=19% Similarity=0.299 Sum_probs=18.8
Q ss_pred ccchHHHHHHHHHHcCCeEEEEEcCCC
Q psy12875 42 TSYIAASYVKNIEAAGARVVPILIGQD 68 (308)
Q Consensus 42 ~~~i~~~~~~~l~~aG~~~~~i~~~~~ 68 (308)
|..+.....++|++.+..+..+.....
T Consensus 4 D~~i~~~~~~~l~~~~~~~~~~~~~~~ 30 (286)
T PF04230_consen 4 DDLILEALLKLLKKHGPDAEIIIFSPD 30 (286)
T ss_pred HHHHHHHHHHHHHhcCCceEEEEeCCC
Confidence 556777888999988866655554443
No 300
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=44.85 E-value=42 Score=26.98 Aligned_cols=80 Identities=16% Similarity=0.191 Sum_probs=45.9
Q ss_pred cchHHHHHHHHHHcCCeEEEEEcCCC---------------hh---HHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHH
Q psy12875 43 SYIAASYVKNIEAAGARVVPILIGQD---------------RE---YYAEILTQINGVVIPGGGTGFDHPNGYADAGRQI 104 (308)
Q Consensus 43 ~~i~~~~~~~l~~aG~~~~~i~~~~~---------------~~---~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~ 104 (308)
..+.+.+.+.+++.|+++..+.+.+. .+ ++.+.+.++|++|+--.- ... .+....+.+
T Consensus 17 ~~l~~~~~~~l~~~g~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~aD~iI~~sP~---y~~-~~s~~lK~~ 92 (152)
T PF03358_consen 17 RKLAEAVAEQLEEAGAEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKEADGIIFASPV---YNG-SVSGQLKNF 92 (152)
T ss_dssp HHHHHHHHHHHHHTTEEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHHSSEEEEEEEE---BTT-BE-HHHHHH
T ss_pred HHHHHHHHHHHHHcCCEEEEEeccccchhhcccccccccCCcHHHHHHHhceecCCeEEEeecE---EcC-cCChhhhHH
Confidence 34666777888888999998877652 11 223456789999984332 110 233445556
Q ss_pred HHHHHH-HHHcCCCccEEEechh
Q psy12875 105 LHLVDK-INEEGVTFPVLGVCLG 126 (308)
Q Consensus 105 ~e~~~~-~~~~g~~~PvlGIC~G 126 (308)
++++.. ....-.++|+..++-|
T Consensus 93 lD~~~~~~~~~~~~K~~~~i~~~ 115 (152)
T PF03358_consen 93 LDRLSCWFRRALRGKPVAIIAVG 115 (152)
T ss_dssp HHTHHHTHTTTTTTSEEEEEEEE
T ss_pred HHHhccccccccCCCEEEEEEEe
Confidence 665531 0011134888887654
No 301
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=44.48 E-value=87 Score=31.73 Aligned_cols=68 Identities=15% Similarity=0.257 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHcCCeEEEEEcCCCh-h----H-H--HHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCC
Q psy12875 45 IAASYVKNIEAAGARVVPILIGQDR-E----Y-Y--AEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGV 116 (308)
Q Consensus 45 i~~~~~~~l~~aG~~~~~i~~~~~~-~----~-~--~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~ 116 (308)
+...+.++|++.|.++......... . . . ...+.++|.+|.-||. - -++..++.+.. .
T Consensus 307 ~~~~i~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~lGGD--G-----------T~L~aa~~~~~--~ 371 (569)
T PRK14076 307 LALKIIKYLDSKGIPYELESFLYNKLKNRLNEECNLIDDIEEISHIISIGGD--G-----------TVLRASKLVNG--E 371 (569)
T ss_pred HHHHHHHHHHHCCCEEEEechhhhhhcccccccccccccccCCCEEEEECCc--H-----------HHHHHHHHhcC--C
Confidence 4556788898889877654321100 0 0 0 0123467999999983 1 13333444433 3
Q ss_pred CccEEEechhh
Q psy12875 117 TFPVLGVCLGF 127 (308)
Q Consensus 117 ~~PvlGIC~G~ 127 (308)
.+||+||-.|-
T Consensus 372 ~~PilGin~G~ 382 (569)
T PRK14076 372 EIPIICINMGT 382 (569)
T ss_pred CCCEEEEcCCC
Confidence 59999999875
No 302
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=44.35 E-value=1.8e+02 Score=25.02 Aligned_cols=44 Identities=7% Similarity=0.142 Sum_probs=28.6
Q ss_pred chHHHHHHHHHHcCCeEEEEEcCCChhH----HHHh-cCCCCEEEEcCC
Q psy12875 44 YIAASYVKNIEAAGARVVPILIGQDREY----YAEI-LTQINGVVIPGG 87 (308)
Q Consensus 44 ~i~~~~~~~l~~aG~~~~~i~~~~~~~~----~~~~-l~~~dGlilpGG 87 (308)
.+...+.+.+++.|..+.......+.+. ++.. -.++||+++.+.
T Consensus 16 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~~dgii~~~~ 64 (259)
T cd01542 16 RTVKGILAALYENGYQMLLMNTNFSIEKEIEALELLARQKVDGIILLAT 64 (259)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 3455677888889999887765433332 2222 257999999764
No 303
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=43.87 E-value=82 Score=31.40 Aligned_cols=68 Identities=16% Similarity=0.159 Sum_probs=37.6
Q ss_pred hHHHHHHHHH-HcCCeEEEEEcCCCh-----------------hHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHH
Q psy12875 45 IAASYVKNIE-AAGARVVPILIGQDR-----------------EYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILH 106 (308)
Q Consensus 45 i~~~~~~~l~-~aG~~~~~i~~~~~~-----------------~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e 106 (308)
+...+.+||+ ..|..+...+..... ........++|.+|.-||. - .+ +.
T Consensus 211 l~~~I~~~L~~~~gi~V~ve~~~a~~l~~~~~~~~~~~~~~~~~~~~~l~~~~DlVIsiGGD--G----Tl-------L~ 277 (508)
T PLN02935 211 LCAEMVRWLREQKGLNIYVEPRVKKELLSESSYFNFVQTWEDEKEILLLHTKVDLVITLGGD--G----TV-------LW 277 (508)
T ss_pred HHHHHHHHHHhcCCCEEEEechhhhhhccccccccccccccccchhhhcccCCCEEEEECCc--H----HH-------HH
Confidence 4456778888 477776654321100 0011122468999999983 1 22 33
Q ss_pred HHHHHHHcCCCccEEEechhh
Q psy12875 107 LVDKINEEGVTFPVLGVCLGF 127 (308)
Q Consensus 107 ~~~~~~~~g~~~PvlGIC~G~ 127 (308)
.++.+.. ..+||+||-.|-
T Consensus 278 Aar~~~~--~~iPILGIN~G~ 296 (508)
T PLN02935 278 AASMFKG--PVPPVVPFSMGS 296 (508)
T ss_pred HHHHhcc--CCCcEEEEeCCC
Confidence 3333333 348999999873
No 304
>TIGR01382 PfpI intracellular protease, PfpI family. The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.
Probab=42.68 E-value=21 Score=29.25 Aligned_cols=27 Identities=22% Similarity=0.380 Sum_probs=21.1
Q ss_pred hhhhHhhh-cCCCCeeeeehhHHHHHHH
Q psy12875 164 LFSQINEE-GVTFPVLGVCLGFELILQV 190 (308)
Q Consensus 164 ~~~~i~~~-~~~~PilGiClG~Qll~~~ 190 (308)
....+++. ...+|+.+||-|.++|+.+
T Consensus 81 l~~~l~~~~~~~~~i~~ic~G~~~La~a 108 (166)
T TIGR01382 81 AVRLVREFVEKGKPVAAICHGPQLLISA 108 (166)
T ss_pred HHHHHHHHHHcCCEEEEEChHHHHHHhc
Confidence 34455554 5678999999999999985
No 305
>cd03131 GATase1_HTS Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). HTS, the first enzyme in methionine biosynthesis in Escherichia coli, transfers a succinyl group from succinyl-CoA to homoserine forming succinyl homoserine. It has been suggested that the succinyl group of succinyl-CoA is initially transferred to an enzyme nucleophile before subsequent transfer to homoserine. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with GATase1 domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. It has been proposed that this cys is in the active site of the molecule. However, as succinyl has been found bound to a conserved lysine residue, this conserved cys may play a role in dimer formation. HTS acti
Probab=42.65 E-value=8.3 Score=32.77 Aligned_cols=78 Identities=10% Similarity=-0.007 Sum_probs=49.0
Q ss_pred cCCCCeeeeehhHHHHHHHhCCcc-cccCCcccceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeec
Q psy12875 172 GVTFPVLGVCLGFELILQVSNNDT-DFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQ 250 (308)
Q Consensus 172 ~~~~PilGiClG~Qll~~~~G~~v-~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~ 250 (308)
....|+||+|.|+|+...+++|.. ...+.+......++. ...++|++++++.+.+ -+.|...|+..
T Consensus 96 ~~v~stl~iCWgaqaal~~~yGi~k~~~~~K~~Gvf~~~~-----~~~hpL~~g~~d~F~~--------PhSR~~~v~~~ 162 (175)
T cd03131 96 THVTSTLFSCWAAMAALYYFYGIKKHQLPEKIFGVFPHTI-----LEPHPLLRGLDDGFDV--------PHSRYAEVDRE 162 (175)
T ss_pred HhCcchHHHHHHHHHHHHHHcCcccccCCCceEEEEEeee-----cCCCccccCCCCceee--------cCcccccCCHH
Confidence 346899999999999999999875 444333222222221 1267899999987754 45555556543
Q ss_pred cccccCCCCCeEEEE
Q psy12875 251 DMIKYGLTETWNILT 265 (308)
Q Consensus 251 ~~~~~~l~~~~~via 265 (308)
.+. ..++++|++
T Consensus 163 ~~~---~~~~l~il~ 174 (175)
T cd03131 163 DIE---EAAGLTILA 174 (175)
T ss_pred HHh---hCCCCEEcc
Confidence 321 245666654
No 306
>PF02514 CobN-Mg_chel: CobN/Magnesium Chelatase; InterPro: IPR003672 This family contains a domain common to the cobN protein and to magnesium protoporphyrin chelatase. CobN may play a role in cobalt insertion reactions and is implicated in the conversion of precorrin-2 to cobyrinic acid in cobalamin biosynthesis []. Magnesium protoporphyrin chelatase is involved in chlorophyll biosynthesis as the third subunit of light-independent protochlorophyllide reductase in bacteria and plants [].; GO: 0009058 biosynthetic process
Probab=42.17 E-value=1.2e+02 Score=33.30 Aligned_cols=65 Identities=17% Similarity=0.388 Sum_probs=42.5
Q ss_pred CCCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCC---ChhHHHHhcC-----CCCEEEEcCC
Q psy12875 16 TDTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQ---DREYYAEILT-----QINGVVIPGG 87 (308)
Q Consensus 16 ~~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~---~~~~~~~~l~-----~~dGlilpGG 87 (308)
..+|+|||+...... ..+...++ ..+.+.|++.|+.++++.... ....++..+. .+|+||-.-+
T Consensus 69 ~~~P~VgIlfyrs~~-------~~g~~~~v-daLI~~LE~~G~nvipvf~~~~~~~~~~i~~~f~~~g~~~vDaIIn~~~ 140 (1098)
T PF02514_consen 69 PNRPTVGILFYRSYW-------LSGNTAVV-DALIRALEERGLNVIPVFCSSGPDSQEAIEDYFMDDGKPRVDAIINLTG 140 (1098)
T ss_pred CCCCEEEEEeehhhh-------hcCCcHHH-HHHHHHHHHCCCeEEEEEecCccchHHHHHHHHhhcCCCCceEEEEcCc
Confidence 368999999875542 11222344 478899999999999988543 2233445443 4899887554
Q ss_pred C
Q psy12875 88 G 88 (308)
Q Consensus 88 ~ 88 (308)
.
T Consensus 141 f 141 (1098)
T PF02514_consen 141 F 141 (1098)
T ss_pred c
Confidence 3
No 307
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=42.03 E-value=2e+02 Score=24.50 Aligned_cols=90 Identities=16% Similarity=0.161 Sum_probs=50.8
Q ss_pred EEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCC------------Chh--HHHHhcCCCCEEEEc
Q psy12875 20 VIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQ------------DRE--YYAEILTQINGVVIP 85 (308)
Q Consensus 20 ~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~------------~~~--~~~~~l~~~dGlilp 85 (308)
+++|..++... ....-+.+.+.+.+++.|.++..+.+.. +++ .+.+.+.++|+|||-
T Consensus 3 Il~I~GSpr~~---------S~t~~l~~~~~~~l~~~g~ev~~idL~~l~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi~ 73 (191)
T PRK10569 3 VITLAGSPRFP---------SRSSALLEYAREWLNGLGVEVYHWNLQNFAPEDLLYARFDSPALKTFTEQLAQADGLIVA 73 (191)
T ss_pred EEEEEcCCCCC---------ChHHHHHHHHHHHHHhCCCEEEEEEccCCChHHHHhccCCCHHHHHHHHHHHHCCEEEEE
Confidence 67777776543 1123355666778888898887664421 011 223456789999984
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHHH-HHHcCCCccEEEech
Q psy12875 86 GGGTGFDHPNGYADAGRQILHLVDK-INEEGVTFPVLGVCL 125 (308)
Q Consensus 86 GG~~~~~~~~~~~~~~~~~~e~~~~-~~~~g~~~PvlGIC~ 125 (308)
-.-. +- .+....+.+++++.. .+ .++|++-++-
T Consensus 74 tP~Y--~~--s~pg~LKn~iD~l~~~~l---~~K~v~iiat 107 (191)
T PRK10569 74 TPVY--KA--SFSGALKTLLDLLPERAL---EHKVVLPLAT 107 (191)
T ss_pred CCcc--CC--CCCHHHHHHHHhCChhhh---CCCEEEEEEe
Confidence 3321 11 255556667776532 22 2477775554
No 308
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=41.36 E-value=90 Score=28.49 Aligned_cols=67 Identities=18% Similarity=0.233 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHcCCeEEEEEcCCChh------HHHHh-cCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCC
Q psy12875 45 IAASYVKNIEAAGARVVPILIGQDRE------YYAEI-LTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVT 117 (308)
Q Consensus 45 i~~~~~~~l~~aG~~~~~i~~~~~~~------~~~~~-l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~ 117 (308)
+.+.+.++|++.|.++.......... ..... .+++|.++.-||. - -+++.++ ... .+
T Consensus 17 ~~~~I~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~iGGD--G-----------TlL~a~~-~~~--~~ 80 (277)
T PRK03708 17 LAYRVYDFLKVSGYEVVVDSETYEHLPEFSEEDVLPLEEMDVDFIIAIGGD--G-----------TILRIEH-KTK--KD 80 (277)
T ss_pred HHHHHHHHHHHCCCEEEEecchhhhcCcccccccccccccCCCEEEEEeCc--H-----------HHHHHHH-hcC--CC
Confidence 45677889999998887654211100 00011 1368999999983 1 2333344 333 35
Q ss_pred ccEEEechhh
Q psy12875 118 FPVLGVCLGF 127 (308)
Q Consensus 118 ~PvlGIC~G~ 127 (308)
+||+||-.|.
T Consensus 81 ~pi~gIn~G~ 90 (277)
T PRK03708 81 IPILGINMGT 90 (277)
T ss_pred CeEEEEeCCC
Confidence 9999999886
No 309
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=40.98 E-value=1.5e+02 Score=25.86 Aligned_cols=43 Identities=12% Similarity=0.115 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHcCCeEEEEEcCCChhH----HHH-hcCCCCEEEEcCC
Q psy12875 45 IAASYVKNIEAAGARVVPILIGQDREY----YAE-ILTQINGVVIPGG 87 (308)
Q Consensus 45 i~~~~~~~l~~aG~~~~~i~~~~~~~~----~~~-~l~~~dGlilpGG 87 (308)
+-..+.+.+++.|..+.......+.+. ++. .-.++|||++.+.
T Consensus 17 ~~~~i~~~~~~~g~~v~~~~~~~~~~~~~~~i~~~~~~~~Dgiii~~~ 64 (282)
T cd06318 17 LTEAAKAHAKALGYELISTDAQGDLTKQIADVEDLLTRGVNVLIINPV 64 (282)
T ss_pred HHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 455677888889998876654333321 222 2347999999653
No 310
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=40.27 E-value=1.7e+02 Score=22.35 Aligned_cols=66 Identities=9% Similarity=0.090 Sum_probs=40.9
Q ss_pred ccchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEE
Q psy12875 42 TSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVL 121 (308)
Q Consensus 42 ~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~Pvl 121 (308)
.+.+.....+.+++.|..+.+.-.. ..+++...+++| +++.|.. .++.++.+++..+. .++||-
T Consensus 13 Ss~la~km~~~a~~~gi~~~i~a~~--~~e~~~~~~~~D-vill~PQ------------v~~~~~~i~~~~~~-~~ipv~ 76 (99)
T cd05565 13 SGLLANALNKGAKERGVPLEAAAGA--YGSHYDMIPDYD-LVILAPQ------------MASYYDELKKDTDR-LGIKLV 76 (99)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEee--HHHHHHhccCCC-EEEEcCh------------HHHHHHHHHHHhhh-cCCCEE
Confidence 4567788889999999877655443 234566778899 4555543 23444555544432 348886
Q ss_pred Ee
Q psy12875 122 GV 123 (308)
Q Consensus 122 GI 123 (308)
-|
T Consensus 77 ~I 78 (99)
T cd05565 77 TT 78 (99)
T ss_pred Ee
Confidence 44
No 311
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=39.96 E-value=1.8e+02 Score=25.79 Aligned_cols=43 Identities=16% Similarity=0.159 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHcCCeEEEEEcCCChhH----HHH-hcCCCCEEEEcCC
Q psy12875 45 IAASYVKNIEAAGARVVPILIGQDREY----YAE-ILTQINGVVIPGG 87 (308)
Q Consensus 45 i~~~~~~~l~~aG~~~~~i~~~~~~~~----~~~-~l~~~dGlilpGG 87 (308)
+...+.+.+++.|..+.......+.+. ++. .-.++|||++.+.
T Consensus 17 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~ 64 (288)
T cd01538 17 DRPNFEAALKELGAEVIVQNANGDPAKQISQIENMIAKGVDVLVIAPV 64 (288)
T ss_pred HHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 445677888889999887765444332 122 2247999999754
No 312
>cd03142 GATase1_ThuA Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). This group includes proteins similar to SmThuA which plays a role in a major pathway for trehalose catabolism. SmThuA is induced by trehalose but not by related structurally similar disaccharides like sucrose or maltose. Proteins in this group lack the catalytic triad of typical GATase1 domains: a His replaces the reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. S. meliloti Rm1021 thuA mutants are impaired in competitive colonization of Medicago sativa roots but are more competitive than the wild-type Rml021 in infecting alfalfa roots and forming nitrogen-fixing nodules.
Probab=39.71 E-value=1.3e+02 Score=26.31 Aligned_cols=75 Identities=11% Similarity=0.124 Sum_probs=44.7
Q ss_pred ccchHHHHHHHHHHcCCeEEEEEcCCChhHH-HHhcCCCCEEEEc--CCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCc
Q psy12875 42 TSYIAASYVKNIEAAGARVVPILIGQDREYY-AEILTQINGVVIP--GGGTGFDHPNGYADAGRQILHLVDKINEEGVTF 118 (308)
Q Consensus 42 ~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~-~~~l~~~dGlilp--GG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~ 118 (308)
..-|...+...|++.|+++....+.+....+ ++.|+++|.||+- .+...+++ ...+.+.++++.| .
T Consensus 21 ~~~~~~~~~~~L~~~gf~V~~~~~~d~~~~~~~~~L~~~D~lV~~~~~~~~~l~~---------eq~~~l~~~V~~G--g 89 (215)
T cd03142 21 PDGMHGTIAAALAEYGFDVQTATLDEPEHGLTEEVLAETDVLLWWGHIAHDEVKD---------EIVERVHRRVLDG--M 89 (215)
T ss_pred cchHHHHHHHHHHhcCcEEEEEeccCccccCCHhHHhcCCEEEEeCCCCcCcCCH---------HHHHHHHHHHHcC--C
Confidence 3557888899999999998866544322112 3358899999982 22112222 3344455566654 4
Q ss_pred cEEEechhh
Q psy12875 119 PVLGVCLGF 127 (308)
Q Consensus 119 PvlGIC~G~ 127 (308)
=++|+=.|+
T Consensus 90 Glv~lHsg~ 98 (215)
T cd03142 90 GLIVLHSGH 98 (215)
T ss_pred CEEEECCCc
Confidence 466655554
No 313
>PRK03604 moaC bifunctional molybdenum cofactor biosynthesis protein MoaC/MogA; Provisional
Probab=39.50 E-value=2.3e+02 Score=26.46 Aligned_cols=46 Identities=22% Similarity=0.232 Sum_probs=29.8
Q ss_pred HHHHHHHHHcCCeEEEEEcC-CChhHHHH----h-cCCCCEEEEcCCCCCCCC
Q psy12875 47 ASYVKNIEAAGARVVPILIG-QDREYYAE----I-LTQINGVVIPGGGTGFDH 93 (308)
Q Consensus 47 ~~~~~~l~~aG~~~~~i~~~-~~~~~~~~----~-l~~~dGlilpGG~~~~~~ 93 (308)
..+..+|++.|+++.....- ++.+.+.+ . .+.+|-||.+||. ...+
T Consensus 178 ~~L~~~L~~~G~~v~~~~iVpDD~~~I~~al~~a~~~~~DlIITTGGt-g~g~ 229 (312)
T PRK03604 178 KLIVEGLEEAGFEVSHYTIIPDEPAEIAAAVAAWIAEGYALIITTGGT-GLGP 229 (312)
T ss_pred HHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHhhhCCCCEEEECCCC-CCCC
Confidence 35668899999988766543 34343333 2 2468989889886 4544
No 314
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=39.40 E-value=2.1e+02 Score=24.83 Aligned_cols=43 Identities=19% Similarity=0.236 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHcCCeEEEEEcCCChhH----HHHh-cCCCCEEEEcCC
Q psy12875 45 IAASYVKNIEAAGARVVPILIGQDREY----YAEI-LTQINGVVIPGG 87 (308)
Q Consensus 45 i~~~~~~~l~~aG~~~~~i~~~~~~~~----~~~~-l~~~dGlilpGG 87 (308)
+-..+.+++++.|..+.......+.+. ++.. -.++|||++..+
T Consensus 17 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~vdgii~~~~ 64 (273)
T cd06305 17 YLAGTKAEAEALGGDLRVYDAGGDDAKQADQIDQAIAQKVDAIIIQHG 64 (273)
T ss_pred HHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 445667888889998887654333321 1221 237999999654
No 315
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=39.38 E-value=2.4e+02 Score=24.48 Aligned_cols=43 Identities=16% Similarity=0.398 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHcCCeEEEEEcCCC-hhHHHHhc--CCCCEEEEcCC
Q psy12875 45 IAASYVKNIEAAGARVVPILIGQD-REYYAEIL--TQINGVVIPGG 87 (308)
Q Consensus 45 i~~~~~~~l~~aG~~~~~i~~~~~-~~~~~~~l--~~~dGlilpGG 87 (308)
+-+...+.+++.|..+.+.....+ ...+.+.+ .++||||+.+.
T Consensus 28 ~~~gi~~~~~~~g~~~~v~~~~~~~~~~~~~~l~~~~~dgiii~~~ 73 (275)
T cd06295 28 LLGGIADALAERGYDLLLSFVSSPDRDWLARYLASGRADGVILIGQ 73 (275)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCchhHHHHHHHHHhCCCCEEEEeCC
Confidence 334566778888998887765433 22333333 47999999754
No 316
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=39.11 E-value=1.6e+02 Score=21.88 Aligned_cols=76 Identities=13% Similarity=0.216 Sum_probs=46.3
Q ss_pred HHHHHHHHHHcCCeEEEE--EcCCChh--HHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEE
Q psy12875 46 AASYVKNIEAAGARVVPI--LIGQDRE--YYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVL 121 (308)
Q Consensus 46 ~~~~~~~l~~aG~~~~~i--~~~~~~~--~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~Pvl 121 (308)
...|.+.+++.|++.... .-..... .++..+.+.|.||++=+- ++. .....+++..++ .++|+.
T Consensus 12 ~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~--vsH---------~~~~~vk~~akk-~~ip~~ 79 (97)
T PF10087_consen 12 ERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDY--VSH---------NAMWKVKKAAKK-YGIPII 79 (97)
T ss_pred HHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCC--cCh---------HHHHHHHHHHHH-cCCcEE
Confidence 357889999999998877 1111122 377788899999997553 222 233444433332 458988
Q ss_pred Eec-hhhhHHHHH
Q psy12875 122 GVC-LGFELILQV 133 (308)
Q Consensus 122 GIC-~G~Qll~~~ 133 (308)
-.= .|...|..+
T Consensus 80 ~~~~~~~~~l~~~ 92 (97)
T PF10087_consen 80 YSRSRGVSSLERA 92 (97)
T ss_pred EECCCCHHHHHHH
Confidence 654 465554433
No 317
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=38.46 E-value=2.2e+02 Score=24.55 Aligned_cols=43 Identities=16% Similarity=0.270 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHcCCeEEEEEcCCChhH----HHHhc-CCCCEEEEcCC
Q psy12875 45 IAASYVKNIEAAGARVVPILIGQDREY----YAEIL-TQINGVVIPGG 87 (308)
Q Consensus 45 i~~~~~~~l~~aG~~~~~i~~~~~~~~----~~~~l-~~~dGlilpGG 87 (308)
+...+.+++++.|..+..+....+.+. ++... .++||||+.+.
T Consensus 17 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 64 (265)
T cd06299 17 LATAIQDAASAAGYSTIIGNSDENPETENRYLDNLLSQRVDGIIVVPH 64 (265)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 445667888889998887765444321 22222 37999999765
No 318
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=38.11 E-value=2.3e+02 Score=24.39 Aligned_cols=43 Identities=16% Similarity=0.333 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHcCCeEEEEEcCCChhH----HHHhcC-CCCEEEEcCC
Q psy12875 45 IAASYVKNIEAAGARVVPILIGQDREY----YAEILT-QINGVVIPGG 87 (308)
Q Consensus 45 i~~~~~~~l~~aG~~~~~i~~~~~~~~----~~~~l~-~~dGlilpGG 87 (308)
+...+.+.+++.|..++......+.+. +....+ ++||+++.+.
T Consensus 17 ~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~ 64 (268)
T cd06273 17 VIQAFQETLAAHGYTLLVASSGYDLDREYAQARKLLERGVDGLALIGL 64 (268)
T ss_pred HHHHHHHHHHHCCCEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 345667888889988887543333321 222223 6899999764
No 319
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=37.76 E-value=2.2e+02 Score=24.58 Aligned_cols=43 Identities=12% Similarity=0.230 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHcCCeEEEEEcCCChhH----HHH-hcCCCCEEEEcCC
Q psy12875 45 IAASYVKNIEAAGARVVPILIGQDREY----YAE-ILTQINGVVIPGG 87 (308)
Q Consensus 45 i~~~~~~~l~~aG~~~~~i~~~~~~~~----~~~-~l~~~dGlilpGG 87 (308)
+...+.+.+++.|..+.+.....+.+. ++. .-.++||+++.+.
T Consensus 17 ~~~~i~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~vdgiii~~~ 64 (267)
T cd06322 17 LANAMKEEAKKQKVNLIVSIANQDLNKQLSDVEDFITKKVDAIVLSPV 64 (267)
T ss_pred HHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 456677888888988876654333221 122 2347999999654
No 320
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=37.39 E-value=2.7e+02 Score=24.11 Aligned_cols=43 Identities=19% Similarity=0.266 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHcCCeEEEEEcCCChhH----HHHhc-CCCCEEEEcCC
Q psy12875 45 IAASYVKNIEAAGARVVPILIGQDREY----YAEIL-TQINGVVIPGG 87 (308)
Q Consensus 45 i~~~~~~~l~~aG~~~~~i~~~~~~~~----~~~~l-~~~dGlilpGG 87 (308)
+...+.+.+++.|..+.......+.+. ++... .++||+++.++
T Consensus 17 ~~~~i~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~ 64 (269)
T cd06281 17 LFSGAEDRLRAAGYSLLIANSLNDPERELEILRSFEQRRMDGIIIAPG 64 (269)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEecC
Confidence 445677888889999876654433321 22222 47999999765
No 321
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=37.25 E-value=2.5e+02 Score=23.78 Aligned_cols=44 Identities=14% Similarity=0.215 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHcCCeEEEEEcCCChhH----HHHh-cCCCCEEEEcCCC
Q psy12875 45 IAASYVKNIEAAGARVVPILIGQDREY----YAEI-LTQINGVVIPGGG 88 (308)
Q Consensus 45 i~~~~~~~l~~aG~~~~~i~~~~~~~~----~~~~-l~~~dGlilpGG~ 88 (308)
+.....+++++.|..+.......+.+. ++.. -.++||+++.+..
T Consensus 17 ~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iii~~~~ 65 (264)
T cd06267 17 LLRGIEEAAREAGYSVLLCNSDEDPEKEREALELLLSRRVDGIILAPSR 65 (264)
T ss_pred HHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCcCEEEEecCC
Confidence 445667777778888887766544321 2222 2479999997663
No 322
>PF12724 Flavodoxin_5: Flavodoxin domain
Probab=37.14 E-value=44 Score=26.92 Aligned_cols=73 Identities=12% Similarity=0.025 Sum_probs=34.8
Q ss_pred chHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEe
Q psy12875 44 YIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGV 123 (308)
Q Consensus 44 ~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGI 123 (308)
.+.+.+.+.|...+..+....... ....+..+|.||+-++-. +.+....+.+++++..+.-.++|+..+
T Consensus 13 ~~A~~ia~~l~~~~~~v~~~~~~~----~~~~~~~yD~vi~gspiy-------~g~~~~~~~~fi~~~~~~l~~k~v~~f 81 (143)
T PF12724_consen 13 KIAEWIAEKLGEEGELVDLEKVEE----DEPDLSDYDAVIFGSPIY-------AGRIPGEMREFIKKNKDNLKNKKVALF 81 (143)
T ss_pred HHHHHHHHHHhhhccEEEHHhhhh----cccccccCCEEEEEEEEE-------CCcCCHHHHHHHHHHHHHHcCCcEEEE
Confidence 345555666665544333222111 112578999999866531 222233344444332211124677665
Q ss_pred chhh
Q psy12875 124 CLGF 127 (308)
Q Consensus 124 C~G~ 127 (308)
+-|+
T Consensus 82 ~~~~ 85 (143)
T PF12724_consen 82 SVGG 85 (143)
T ss_pred EEeC
Confidence 5544
No 323
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=36.87 E-value=55 Score=29.84 Aligned_cols=38 Identities=18% Similarity=0.411 Sum_probs=23.9
Q ss_pred hcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhh
Q psy12875 75 ILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGF 127 (308)
Q Consensus 75 ~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~ 127 (308)
..+++|.++.-||. - -++..++.+.. ..+||+||-.|-
T Consensus 73 ~~~~~D~ii~lGGD--G-----------T~L~~~~~~~~--~~~Pilgin~G~ 110 (285)
T PF01513_consen 73 LEEGVDLIIVLGGD--G-----------TFLRAARLFGD--YDIPILGINTGT 110 (285)
T ss_dssp HCCCSSEEEEEESH--H-----------HHHHHHHHCTT--ST-EEEEEESSS
T ss_pred cccCCCEEEEECCC--H-----------HHHHHHHHhcc--CCCcEEeecCCC
Confidence 35789999999992 1 12333333333 359999999874
No 324
>PRK08227 autoinducer 2 aldolase; Validated
Probab=36.67 E-value=1.5e+02 Score=26.95 Aligned_cols=55 Identities=22% Similarity=0.348 Sum_probs=37.1
Q ss_pred HHHHHHcCCeEEEEEcCCChhHHHHhcCCC-CEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcC
Q psy12875 50 VKNIEAAGARVVPILIGQDREYYAEILTQI-NGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEG 115 (308)
Q Consensus 50 ~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~-dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g 115 (308)
.+.-.+.|+.++-++|.. +.+++..+.+ --|++.||+. . + .+++++.++++.+.|
T Consensus 164 aRiaaELGADiVK~~y~~--~~f~~vv~a~~vPVviaGG~k-~-~-------~~~~L~~v~~ai~aG 219 (264)
T PRK08227 164 TRIAAEMGAQIIKTYYVE--EGFERITAGCPVPIVIAGGKK-L-P-------ERDALEMCYQAIDEG 219 (264)
T ss_pred HHHHHHHcCCEEecCCCH--HHHHHHHHcCCCcEEEeCCCC-C-C-------HHHHHHHHHHHHHcC
Confidence 344457899999998864 4455544443 5788899973 1 1 246788888888766
No 325
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=36.54 E-value=2.7e+02 Score=25.89 Aligned_cols=67 Identities=7% Similarity=-0.029 Sum_probs=39.5
Q ss_pred hhcccCCCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEE-EcCCChh----HHHHh-cCCCCEEEE
Q psy12875 11 STVTSTDTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPI-LIGQDRE----YYAEI-LTQINGVVI 84 (308)
Q Consensus 11 ~~~~~~~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i-~~~~~~~----~~~~~-l~~~dGlil 84 (308)
++++......|++....... |. ...+.....++.++.|..+... +...+.+ .++.. -.++|||++
T Consensus 16 ~~~~~~~~~~i~~v~k~~~~-pf--------~~~~~~Gi~~aa~~~G~~v~~~~~~~~d~~~q~~~i~~li~~~vdgIiv 86 (336)
T PRK15408 16 ISMTVQAAERIAFIPKLVGV-GF--------FTSGGNGAKEAGKELGVDVTYDGPTEPSVSGQVQLINNFVNQGYNAIIV 86 (336)
T ss_pred hcccccCCcEEEEEECCCCC-HH--------HHHHHHHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 56666677889988754432 11 1224456678888899888752 2222221 12232 357999999
Q ss_pred cC
Q psy12875 85 PG 86 (308)
Q Consensus 85 pG 86 (308)
..
T Consensus 87 ~~ 88 (336)
T PRK15408 87 SA 88 (336)
T ss_pred ec
Confidence 63
No 326
>PRK00911 dihydroxy-acid dehydratase; Provisional
Probab=35.90 E-value=3e+02 Score=27.86 Aligned_cols=153 Identities=17% Similarity=0.158 Sum_probs=79.8
Q ss_pred cCCCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCC-----------------hh----HHH
Q psy12875 15 STDTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQD-----------------RE----YYA 73 (308)
Q Consensus 15 ~~~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~-----------------~~----~~~ 73 (308)
-.+||+|||...++.-.| ...+-.-+.+...+-++++|+.+..++...- .+ .++
T Consensus 28 dl~kP~IgI~ns~se~~P-----ch~hl~~la~~Vk~gi~~aGg~p~ef~ti~~~Dgi~~g~~GM~ysL~sReliA~~iE 102 (552)
T PRK00911 28 DFDKPFIGIANSWNEITP-----CNIHLNELADAVKEGVRAAGGVPFEFNTIGVSDGIAMGHEGMKYSLVSREVIADSIE 102 (552)
T ss_pred HhcCCEEEEecccccccc-----chhhHHHHHHHHHHHHHHcCCEeEEeCCCccccccccCcccceehhhhHHHHHHHHH
Confidence 346999999988765411 1112233566777888899988876643221 11 111
Q ss_pred H--hcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHHhcCCcc-ccccccccccc
Q psy12875 74 E--ILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQVSNNDTD-FRKSCKVQQVN 150 (308)
Q Consensus 74 ~--~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~~~gg~~-~~~~~~~~~~~ 150 (308)
. ....+||+|+-+|- |.... --++..++ -++|-.-+.-|.++-... .|-.+ +.+..+..
T Consensus 103 ~~~~a~~~Dg~V~l~~C-DK~~P-------g~lMaaar------lniPsi~v~gGpm~~G~~-~g~~~~~~~~~e~~--- 164 (552)
T PRK00911 103 TVVNAHWFDGLVAIPGC-DKNMP-------GMLMAAAR------LNVPSIFVYGGPILPGRL-KGKDLTLVSVFEAV--- 164 (552)
T ss_pred HHhhCCCcceEEEeccC-CCCcH-------HHHHHHHh------cCCCEEEEeCCCcCCCCC-CCccccHHHHHHHH---
Confidence 1 12468999998885 32221 12333222 248988888888765543 22211 00100000
Q ss_pred cceeeecCCCCcchhhhHhhh-cCCCCeeeeehh------HHHHHHHhCCcc
Q psy12875 151 LNLKFLPGAKRSSLFSQINEE-GVTFPVLGVCLG------FELILQVSNNDT 195 (308)
Q Consensus 151 ~~l~~~pg~~~~~~~~~i~~~-~~~~PilGiClG------~Qll~~~~G~~v 195 (308)
-.+.-|..+. +++.+. ..-.|--|.|-| +|.+++++|-.+
T Consensus 165 --g~~~~G~i~~---ee~~~~e~~a~ps~GsC~~mgTANTM~~l~EaLGm~L 211 (552)
T PRK00911 165 --GAYAAGKISE---EELKEIERNACPGAGSCGGMFTANTMACLIEALGMSL 211 (552)
T ss_pred --HHHHcCCCCH---HHHHHHHHhcCCCCCcccccchHHHHHHHHHHHhCCC
Confidence 0111122221 122222 234566677776 589999988654
No 327
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=35.87 E-value=2.4e+02 Score=24.28 Aligned_cols=43 Identities=12% Similarity=0.178 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHcCCeEEEEEcCCChh----HHHHh--cCCCCEEEEcCC
Q psy12875 45 IAASYVKNIEAAGARVVPILIGQDRE----YYAEI--LTQINGVVIPGG 87 (308)
Q Consensus 45 i~~~~~~~l~~aG~~~~~i~~~~~~~----~~~~~--l~~~dGlilpGG 87 (308)
+...+.+++++.|..+.....+.+.+ .+.+. -.++|||++...
T Consensus 17 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~ 65 (270)
T cd01545 17 IQLGALDACRDTGYQLVIEPCDSGSPDLAERVRALLQRSRVDGVILTPP 65 (270)
T ss_pred HHHHHHHHHHhCCCeEEEEeCCCCchHHHHHHHHHHHHCCCCEEEEeCC
Confidence 44566788888999988776654322 12222 246999999754
No 328
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=35.45 E-value=1.3e+02 Score=25.88 Aligned_cols=59 Identities=22% Similarity=0.308 Sum_probs=37.2
Q ss_pred EEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCC-----------------------hhHHHHhc
Q psy12875 20 VIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQD-----------------------REYYAEIL 76 (308)
Q Consensus 20 ~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~-----------------------~~~~~~~l 76 (308)
+++|+..+... +...-+.+...+.+++.|+++..+.+... .+++.+.+
T Consensus 3 i~~I~gs~r~~---------G~t~~l~~~~~~g~~~~G~E~~~i~v~~~~i~~c~~c~~c~~~~~c~~~dD~~~~i~~~l 73 (207)
T COG0655 3 ILGINGSPRSN---------GNTAKLAEAVLEGAEEAGAEVEIIRLPEKNIKPCTGCFACWKKKPCVIKDDDMNEIYEKL 73 (207)
T ss_pred eeEEEecCCCC---------CcHHHHHHHHHHHHHHcCCEEEEEEecCCCcccchHHHhhhccCCCCCCcccHHHHHHHH
Confidence 55666665421 22344566778888999999988866532 12233346
Q ss_pred CCCCEEEEcCC
Q psy12875 77 TQINGVVIPGG 87 (308)
Q Consensus 77 ~~~dGlilpGG 87 (308)
.++|||||...
T Consensus 74 ~~aD~iI~gsP 84 (207)
T COG0655 74 LEADGIIFGSP 84 (207)
T ss_pred HHCCEEEEeCC
Confidence 67899998554
No 329
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=35.19 E-value=2.9e+02 Score=24.57 Aligned_cols=70 Identities=9% Similarity=0.162 Sum_probs=41.5
Q ss_pred cchHHHHHHHHHHcCCeEEEEE-cCC---------ChhHHHH-----hcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHH
Q psy12875 43 SYIAASYVKNIEAAGARVVPIL-IGQ---------DREYYAE-----ILTQINGVVIPGGGTGFDHPNGYADAGRQILHL 107 (308)
Q Consensus 43 ~~i~~~~~~~l~~aG~~~~~i~-~~~---------~~~~~~~-----~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~ 107 (308)
..+++...++++++|.+++-+. ... +++.+.+ ...++|+|++++.. +.. -++++.
T Consensus 131 ~~v~~~~~~~l~~~G~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~~~~~aDAifisCTn--Lrt--------~~vi~~ 200 (239)
T TIGR02990 131 PETSRPMAQYFAVRGFEIVNFTCLGLTDDREMARISPDCIVEAALAAFDPDADALFLSCTA--LRA--------ATCAQR 200 (239)
T ss_pred HHHHHHHHHHHHhCCcEEeeeeccCCCCCceeeecCHHHHHHHHHHhcCCCCCEEEEeCCC--chh--------HHHHHH
Confidence 4578888999999999987652 211 2222222 13468999999764 211 134444
Q ss_pred HHHHHHcCCCccEEEechh
Q psy12875 108 VDKINEEGVTFPVLGVCLG 126 (308)
Q Consensus 108 ~~~~~~~g~~~PvlGIC~G 126 (308)
+.+. -++||+-.-.-
T Consensus 201 lE~~----lGkPVlsSNqa 215 (239)
T TIGR02990 201 IEQA----IGKPVVTSNQA 215 (239)
T ss_pred HHHH----HCCCEEEHHHH
Confidence 4332 24999976543
No 330
>PLN02699 Bifunctional molybdopterin adenylyltransferase/molybdopterin molybdenumtransferase
Probab=35.06 E-value=1.5e+02 Score=30.66 Aligned_cols=79 Identities=16% Similarity=0.167 Sum_probs=43.0
Q ss_pred hhcccCCCCEEEEeccccCC-CCcccccCCCC-ccchHHHHHHHHHHcCCeEEEEEcC-CChhHHHH----hcC-CCCEE
Q psy12875 11 STVTSTDTPVIGILAQEYTH-IPSYVKAYPNY-TSYIAASYVKNIEAAGARVVPILIG-QDREYYAE----ILT-QINGV 82 (308)
Q Consensus 11 ~~~~~~~~P~IGI~~~~~~~-~~~~~~~~~~~-~~~i~~~~~~~l~~aG~~~~~i~~~-~~~~~~~~----~l~-~~dGl 82 (308)
..|.-..||.|+|++.-..- .+.-.....+. .+.-...+..++++.|+++..+..- ++.+.+.+ .++ ++|-|
T Consensus 174 ~~V~V~~kprV~visTGdELv~~g~~~~~~g~i~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~Dlv 253 (659)
T PLN02699 174 TMVKVYPRPTVAILSTGDELVEPTTGTLGRGQIRDSNRAMLLAAAIQQQCKVVDLGIARDDEEELERILDEAISSGVDIL 253 (659)
T ss_pred CeEEeecCCeEEEEeCCcccccCCCCCCCCCcEEeChHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHhhcCCCCEE
Confidence 34454578999998664322 00000000111 1111224567889999998766543 44444433 333 68999
Q ss_pred EEcCCCC
Q psy12875 83 VIPGGGT 89 (308)
Q Consensus 83 ilpGG~~ 89 (308)
|.+||.+
T Consensus 254 ItTGGts 260 (659)
T PLN02699 254 LTSGGVS 260 (659)
T ss_pred EECCCCC
Confidence 9999864
No 331
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=35.05 E-value=2.4e+02 Score=24.17 Aligned_cols=43 Identities=19% Similarity=0.237 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHcCCeEEEEEcCCChhH----HHHh-cCCCCEEEEcCC
Q psy12875 45 IAASYVKNIEAAGARVVPILIGQDREY----YAEI-LTQINGVVIPGG 87 (308)
Q Consensus 45 i~~~~~~~l~~aG~~~~~i~~~~~~~~----~~~~-l~~~dGlilpGG 87 (308)
+...+.+.+++.|..+.......+.+. ++.. -.++|||++.+.
T Consensus 17 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~ 64 (268)
T cd01575 17 VLQGISDVLEAAGYQLLLGNTGYSPEREEELLRTLLSRRPAGLILTGL 64 (268)
T ss_pred HHHHHHHHHHHcCCEEEEecCCCCchhHHHHHHHHHHcCCCEEEEeCC
Confidence 345667888889998887665433221 2222 247999999764
No 332
>PRK13017 dihydroxy-acid dehydratase; Provisional
Probab=34.95 E-value=3.1e+02 Score=28.02 Aligned_cols=152 Identities=18% Similarity=0.201 Sum_probs=79.6
Q ss_pred CCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCC------------ChhH----HHHh--cCC
Q psy12875 17 DTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQ------------DREY----YAEI--LTQ 78 (308)
Q Consensus 17 ~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~------------~~~~----~~~~--l~~ 78 (308)
.||+|||-..++.-.| ...+..-+.+...+-++++|+.+..++... +.+. ++.. -..
T Consensus 46 ~KP~IgI~ns~se~~P-----ch~hl~~la~~vk~gI~~aGG~p~ef~ti~v~d~~~~~~~l~sRelIAd~iE~~~~a~~ 120 (596)
T PRK13017 46 GKPIIGIAQTGSDLSP-----CNRHHLELAERVKEGIRDAGGIPMEFPVHPIQETGKRPTAALDRNLAYLGLVEILYGYP 120 (596)
T ss_pred CCCEEEEEecccCCcC-----chhhHHHHHHHHHHHHHHcCCeeEecccccccccCCCcccccCHHHHHHHHHHHHhcCC
Confidence 6999999988765421 111233355677788889998887665322 1111 1111 246
Q ss_pred CCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHHhcCCcccccccc-ccccccceeeec
Q psy12875 79 INGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCK-VQQVNLNLKFLP 157 (308)
Q Consensus 79 ~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~~~gg~~~~~~~~-~~~~~~~l~~~p 157 (308)
+||+|+-+|- |.... -.++..++ -++|-+-++-|-++-... .|..+-+..+ .+. .-.+.-
T Consensus 121 ~Dg~V~i~gC-DK~~P-------G~lMaaar------lniP~i~v~GG~m~~G~~--~g~~~~~~~~~~e~---~g~~~~ 181 (596)
T PRK13017 121 LDGVVLTTGC-DKTTP-------ACLMAAAT------VDLPAIVLSGGPMLDGWH--EGERVGSGTVIWKA---RELLAA 181 (596)
T ss_pred cceEEEeccC-CCccH-------HHHHHHHh------cCCCEEEEeCCCcCCCCC--CCcCcccchhHHHH---HHHHHc
Confidence 8999999886 33221 12333222 348999888887765532 2221100000 000 001111
Q ss_pred CCCCcchhhhHhhh-cCCCCeeeeehh------HHHHHHHhCCcc
Q psy12875 158 GAKRSSLFSQINEE-GVTFPVLGVCLG------FELILQVSNNDT 195 (308)
Q Consensus 158 g~~~~~~~~~i~~~-~~~~PilGiClG------~Qll~~~~G~~v 195 (308)
|.... +++.+. ..-.|--|.|-| ||.+++++|-.+
T Consensus 182 G~i~~---eel~~~e~~acp~~GsC~gmgTANTM~~l~EaLGm~L 223 (596)
T PRK13017 182 GEIDY---EEFMELVASSAPSVGHCNTMGTASTMNALAEALGMSL 223 (596)
T ss_pred CCCCH---HHHHHHHHhcCCCCCccccccHHHHHHHHHHHHhCCC
Confidence 21111 122222 335677788877 589999988654
No 333
>TIGR00045 glycerate kinase. The only characterized member of this family so far is the glycerate kinase GlxK (EC 2.7.1.31) of E. coli. This enzyme acts after glyoxylate carboligase and 2-hydroxy-3-oxopropionate reductase (tartronate semialdehyde reductase) in the conversion of glyoxylate to 3-phosphoglycerate (the D-glycerate pathway) as a part of allantoin degradation.
Probab=33.94 E-value=77 Score=30.38 Aligned_cols=50 Identities=16% Similarity=0.270 Sum_probs=28.4
Q ss_pred HHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhh
Q psy12875 71 YYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGF 127 (308)
Q Consensus 71 ~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~ 127 (308)
.+++.+++.| +||+|=+ .++..+.+++..-.+.+. +.+ .++|+..||--.
T Consensus 276 ~l~~~l~~AD-lVITGEG-~~D~Qtl~GK~p~~Va~~---A~~--~~vPviai~G~v 325 (375)
T TIGR00045 276 DLEQKIKDAD-LVITGEG-RLDRQSLMGKAPVGVAKR---AKK--YGVPVIAIAGSL 325 (375)
T ss_pred CHHHHhcCCC-EEEECCC-cccccccCCchHHHHHHH---HHH--hCCeEEEEeccc
Confidence 3556788889 5667744 233322344443333333 333 349999999754
No 334
>PF01174 SNO: SNO glutamine amidotransferase family; InterPro: IPR002161 Members of this family are involved in the pyridoxine biosynthetic pathway [, ]. The regulation of cellular growth and proliferation in response to environmental cues is critical for development and the maintenance of viability in all organisms. In unicellular organisms, such as the budding yeast Saccharomyces cerevisiae (Baker's yeast), growth and proliferation are regulated by nutrient availability. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes PdxT, the glutaminase subunit of the PLP synthase. It is involved in the hydrolysis of glutamine to glutamate and ammonia, channeling an ammonia molecule to PdxS. ; PDB: 2ISS_D 4ADS_J 2ABW_B 2YWD_A 2NV0_A 2NV2_N 1R9G_A 1Q7R_A 2YWJ_A.
Probab=33.62 E-value=20 Score=30.80 Aligned_cols=33 Identities=24% Similarity=0.318 Sum_probs=23.2
Q ss_pred CCeEEEEEecCCCceEEEEEEecCCCEEEEeecCCccCc
Q psy12875 259 ETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNAY 297 (308)
Q Consensus 259 ~~~~via~s~~~~~~~v~ai~~~~~p~~GvQFHPE~~~~ 297 (308)
++.+++++.++ . +-+++.. +++++-||||-+..
T Consensus 142 ~~v~vla~~~g-~---iVav~qg--n~latsFHPELT~D 174 (188)
T PF01174_consen 142 EGVEVLAELDG-K---IVAVRQG--NILATSFHPELTDD 174 (188)
T ss_dssp TTEEEEEEETT-E---EEEEEET--TEEEESS-GGGSST
T ss_pred ccccccccccc-c---eEEEEec--CEEEEEeCCcccCc
Confidence 67888887543 2 4566655 49999999998764
No 335
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=32.97 E-value=64 Score=25.94 Aligned_cols=42 Identities=19% Similarity=0.244 Sum_probs=28.3
Q ss_pred HHHHHHHHcCCeEEEEE-cCCChhHHH----HhcCCCCEEEEcCCCC
Q psy12875 48 SYVKNIEAAGARVVPIL-IGQDREYYA----EILTQINGVVIPGGGT 89 (308)
Q Consensus 48 ~~~~~l~~aG~~~~~i~-~~~~~~~~~----~~l~~~dGlilpGG~~ 89 (308)
.+.++|++.|+++.... ..++.+.+. ..+++.|-||.+||-.
T Consensus 21 ~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~D~VittGG~g 67 (144)
T PF00994_consen 21 FLAALLEELGIEVIRYGIVPDDPDAIKEALRRALDRADLVITTGGTG 67 (144)
T ss_dssp HHHHHHHHTTEEEEEEEEEESSHHHHHHHHHHHHHTTSEEEEESSSS
T ss_pred HHHHHHHHcCCeeeEEEEECCCHHHHHHHHHhhhccCCEEEEcCCcC
Confidence 45678899999886443 334444443 3446789999999863
No 336
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=32.42 E-value=3.2e+02 Score=23.76 Aligned_cols=43 Identities=5% Similarity=0.009 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHcCCeEEEEEcCCChh---HHHHhc--CCCCEEEEcCC
Q psy12875 45 IAASYVKNIEAAGARVVPILIGQDRE---YYAEIL--TQINGVVIPGG 87 (308)
Q Consensus 45 i~~~~~~~l~~aG~~~~~i~~~~~~~---~~~~~l--~~~dGlilpGG 87 (308)
+-..+.+++++.|..+.......+.+ .+...+ .++|||++.+.
T Consensus 17 ~~~~i~~~~~~~gy~~~~~~~~~~~~~~~~~~~~l~~~~vdgvi~~~~ 64 (269)
T cd06297 17 LLEGIEGALLEQRYDLALFPLLSLARLKRYLESTTLAYLTDGLLLASY 64 (269)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCcHHHHHHHHHHHHhcCCCEEEEecC
Confidence 44567788888899988876543322 122212 36999999754
No 337
>PRK09932 glycerate kinase II; Provisional
Probab=31.48 E-value=83 Score=30.21 Aligned_cols=50 Identities=18% Similarity=0.278 Sum_probs=28.3
Q ss_pred HHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhh
Q psy12875 71 YYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGF 127 (308)
Q Consensus 71 ~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~ 127 (308)
.+++.++++| +||+|=+ .++..+.+++..-.+.+ .+.+ .++|+..||--.
T Consensus 277 ~l~~~l~~AD-lVITGEG-~~D~Qt~~GK~p~~Va~---~A~~--~~~Pvi~i~G~~ 326 (381)
T PRK09932 277 NLEQAVQGAA-LVITGEG-RIDSQTAGGKAPLGVAS---VAKQ--FNVPVIGIAGVL 326 (381)
T ss_pred ChHHHhccCC-EEEECCC-cccccccCCccHHHHHH---HHHH--cCCCEEEEeccc
Confidence 3456778889 5667754 23332234443333333 3333 349999999754
No 338
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=31.38 E-value=3.2e+02 Score=23.47 Aligned_cols=43 Identities=16% Similarity=0.267 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHcCCeEEEEEcCCChhH----HHHh-cCCCCEEEEcCC
Q psy12875 45 IAASYVKNIEAAGARVVPILIGQDREY----YAEI-LTQINGVVIPGG 87 (308)
Q Consensus 45 i~~~~~~~l~~aG~~~~~i~~~~~~~~----~~~~-l~~~dGlilpGG 87 (308)
+.....+++++.|..+.......+.+. ++.. -.++||+++.+.
T Consensus 17 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 64 (268)
T cd06298 17 LARGIDDIATMYKYNIILSNSDNDKEKELKVLNNLLAKQVDGIIFMGG 64 (268)
T ss_pred HHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHHHhcCCEEEEeCC
Confidence 445667888888999887765433321 2222 247999999764
No 339
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=31.16 E-value=2.4e+02 Score=24.27 Aligned_cols=68 Identities=16% Similarity=0.230 Sum_probs=40.3
Q ss_pred hHHHHHHHHHHcCCeEEEE-EcCCChhH----HHH-hcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCc
Q psy12875 45 IAASYVKNIEAAGARVVPI-LIGQDREY----YAE-ILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTF 118 (308)
Q Consensus 45 i~~~~~~~l~~aG~~~~~i-~~~~~~~~----~~~-~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~ 118 (308)
+.....++.++.|..+..+ +...+.+. ++. .-.++||||+..... .. ..+.++++.++ ++
T Consensus 16 ~~~g~~~~a~~~g~~~~~~~~~~~d~~~q~~~i~~~i~~~~d~Iiv~~~~~--~~----------~~~~l~~~~~~--gI 81 (257)
T PF13407_consen 16 VIKGAKAAAKELGYEVEIVFDAQNDPEEQIEQIEQAISQGVDGIIVSPVDP--DS----------LAPFLEKAKAA--GI 81 (257)
T ss_dssp HHHHHHHHHHHHTCEEEEEEESTTTHHHHHHHHHHHHHTTESEEEEESSST--TT----------THHHHHHHHHT--TS
T ss_pred HHHHHHHHHHHcCCEEEEeCCCCCCHHHHHHHHHHHHHhcCCEEEecCCCH--HH----------HHHHHHHHhhc--Cc
Confidence 4566778888899999886 54444332 222 235799999864421 11 12233444454 48
Q ss_pred cEEEechh
Q psy12875 119 PVLGVCLG 126 (308)
Q Consensus 119 PvlGIC~G 126 (308)
||..+=..
T Consensus 82 pvv~~d~~ 89 (257)
T PF13407_consen 82 PVVTVDSD 89 (257)
T ss_dssp EEEEESST
T ss_pred eEEEEecc
Confidence 99886555
No 340
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=30.86 E-value=3.7e+02 Score=24.88 Aligned_cols=61 Identities=20% Similarity=0.360 Sum_probs=39.4
Q ss_pred CCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChhHH----HHh-cCCCCEEEEcC
Q psy12875 17 DTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYY----AEI-LTQINGVVIPG 86 (308)
Q Consensus 17 ~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~----~~~-l~~~dGlilpG 86 (308)
..-+||+....... + ...-+-..+.+.+++.|..+.......+.+.. +.. -.++||||+.|
T Consensus 57 ~s~~Ig~i~p~~~~--------~-~~~~i~~gi~~~~~~~gy~~~l~~~~~~~~~e~~~~~~l~~~~vdGiIi~~ 122 (333)
T COG1609 57 RTKTIGLVVPDITN--------P-FFAEILKGIEEAAREAGYSLLLANTDDDPEKEREYLETLLQKRVDGLILLG 122 (333)
T ss_pred CCCEEEEEeCCCCC--------c-hHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEec
Confidence 34688988773322 1 11234567778888999999988776644422 222 24799999988
No 341
>PLN02727 NAD kinase
Probab=30.59 E-value=1.2e+02 Score=32.51 Aligned_cols=68 Identities=19% Similarity=0.120 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHc-CCeEEEEEcCCCh---------------hHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHH
Q psy12875 45 IAASYVKNIEAA-GARVVPILIGQDR---------------EYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLV 108 (308)
Q Consensus 45 i~~~~~~~l~~a-G~~~~~i~~~~~~---------------~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~ 108 (308)
....+.+||.+. |.++.+-+...+. .......+.+|.+|.-||. - . ++..+
T Consensus 694 ~~~eL~~~L~~~~gi~V~VE~~~a~~l~~~~~~~~~~~~~~~~~~el~~~~DLVIvLGGD--G----T-------lLrAa 760 (986)
T PLN02727 694 EAKEVASFLYHQEKMNVLVEPDVHDIFARIPGFGFVQTFYSQDTSDLHERVDFVACLGGD--G----V-------ILHAS 760 (986)
T ss_pred HHHHHHHHHHhCCCeEEEEecchHHHhhccccccccceecccchhhcccCCCEEEEECCc--H----H-------HHHHH
Confidence 345678888876 8776643221110 0011223468999999983 1 1 23333
Q ss_pred HHHHHcCCCccEEEechhh
Q psy12875 109 DKINEEGVTFPVLGVCLGF 127 (308)
Q Consensus 109 ~~~~~~g~~~PvlGIC~G~ 127 (308)
+.+.. ..+||+||-.|.
T Consensus 761 r~~~~--~~iPILGINlGr 777 (986)
T PLN02727 761 NLFRG--AVPPVVSFNLGS 777 (986)
T ss_pred HHhcC--CCCCEEEEeCCC
Confidence 43333 348999999985
No 342
>PRK13016 dihydroxy-acid dehydratase; Provisional
Probab=30.38 E-value=3.9e+02 Score=27.25 Aligned_cols=151 Identities=16% Similarity=0.094 Sum_probs=79.8
Q ss_pred CCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCC------------hh----HHHH--hcCC
Q psy12875 17 DTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQD------------RE----YYAE--ILTQ 78 (308)
Q Consensus 17 ~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~------------~~----~~~~--~l~~ 78 (308)
.||+|||...++.-.| ...+-.-+.+...+-++++|+.+..++.... .+ .++. .-..
T Consensus 41 ~KP~IgI~ns~se~~P-----ch~hL~~la~~Vk~gv~~aGG~P~ef~ti~v~Dgi~~g~sl~~RelIAdsiE~~~~a~~ 115 (577)
T PRK13016 41 GKPVIAILNTWSDANP-----CHGHFRERVEDVKRGVLQAGGFPLELPALSLSENFVKPTTMLYRNLLAMETEELIRSHP 115 (577)
T ss_pred cCCEEEEEecccCCcC-----chhhHHHHHHHHHHHHHHcCCeeEecccccCcccccCCcccccHHHHHHHHHHHHhcCC
Confidence 6999999988765421 1112233566777888899988876643221 11 1111 1246
Q ss_pred CCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHHhcCCcc--ccccccccccccceeee
Q psy12875 79 INGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQVSNNDTD--FRKSCKVQQVNLNLKFL 156 (308)
Q Consensus 79 ~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~~~gg~~--~~~~~~~~~~~~~l~~~ 156 (308)
+||+|+-+|- |... .-.++..++ -++|-+-++-|.++-... .|-.+ ..+..+.. -.+.
T Consensus 116 ~Dg~V~l~~C-DK~~-------Pg~lMaaar------lniPsI~v~GG~m~~G~~-~g~~~~~~~~~~e~~-----g~~~ 175 (577)
T PRK13016 116 VDGAVLMGGC-DKTT-------PGLVMGAIS------MGLPMIYLPAGPMLRGNY-RGKVLGSGSDAWKYW-----DERR 175 (577)
T ss_pred ccceEEeccC-CCCc-------HHHHHHHHh------cCCCEEEEecCCCCCCcc-CCceechhHHHHHHH-----HHHH
Confidence 8999998885 3222 112333222 248888888887665432 22111 00100000 0011
Q ss_pred cCCCCcchhhhHhhh-cCCCCeeeeehh------HHHHHHHhCCcc
Q psy12875 157 PGAKRSSLFSQINEE-GVTFPVLGVCLG------FELILQVSNNDT 195 (308)
Q Consensus 157 pg~~~~~~~~~i~~~-~~~~PilGiClG------~Qll~~~~G~~v 195 (308)
-|... .+.+.+. ..-.|--|.|-| ||.+++++|-..
T Consensus 176 ~G~i~---~eel~~~e~~a~p~~GsC~gmgTANTM~~~~EaLGm~L 218 (577)
T PRK13016 176 AGNIT---QAEWLEIEGGIARSYGTCMTMGTASTMTAIAEALGLTL 218 (577)
T ss_pred cCCCC---HHHHHHHHhccCCCCCcccccCHHHHHHHHHHHHhcCC
Confidence 11111 1222222 345788888888 799999998654
No 343
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=30.35 E-value=3.3e+02 Score=23.92 Aligned_cols=43 Identities=16% Similarity=0.276 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHcCCeEEEEEcCCChhHHHH-hcCCCCEEEEcCC
Q psy12875 45 IAASYVKNIEAAGARVVPILIGQDREYYAE-ILTQINGVVIPGG 87 (308)
Q Consensus 45 i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~-~l~~~dGlilpGG 87 (308)
+-..+.+.+++.|..+.........+.... .-.++||+++.+.
T Consensus 22 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~dgiii~~~ 65 (283)
T cd06279 22 FLAGVAEVLDAAGVNLLLLPASSEDSDSALVVSALVDGFIVYGV 65 (283)
T ss_pred HHHHHHHHHHHCCCEEEEecCccHHHHHHHHHhcCCCEEEEeCC
Confidence 344566788888999887764432222222 2357999999754
No 344
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=30.15 E-value=2.8e+02 Score=27.43 Aligned_cols=72 Identities=14% Similarity=0.228 Sum_probs=41.7
Q ss_pred cchHHHHHHHHHHcCCeEEE-EEcCCChhHHHHhcC-CCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccE
Q psy12875 43 SYIAASYVKNIEAAGARVVP-ILIGQDREYYAEILT-QINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPV 120 (308)
Q Consensus 43 ~~i~~~~~~~l~~aG~~~~~-i~~~~~~~~~~~~l~-~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~Pv 120 (308)
+...++-.++-..+|+.+.- +.++.+..++++... +.|-|++.||- | ++.. ..+++.++...+.+-+.||
T Consensus 83 ~~TaeAAk~AAlgAGA~V~~~~a~~l~~~~l~~I~~~~PDIILLaGGt-D------GG~~-e~~l~NA~~La~~~~~~pI 154 (463)
T TIGR01319 83 EITAEAAKRAAHGAGAKIANVYAYDLNNKDIEAIEESNLDIILFAGGT-D------GGEE-ECGIHNAKMLAEHGLDCAI 154 (463)
T ss_pred hhhHHHHHHHHhcCCcEEEEEEeecCCHHHHHHHhhcCCCEEEEeCCc-C------CCch-HHHHHHHHHHHhcCCCCcE
Confidence 34444445566678998875 556666666666433 78999999995 2 3321 2334434333343345787
Q ss_pred EE
Q psy12875 121 LG 122 (308)
Q Consensus 121 lG 122 (308)
.=
T Consensus 155 Iy 156 (463)
T TIGR01319 155 IV 156 (463)
T ss_pred EE
Confidence 63
No 345
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=30.07 E-value=3.5e+02 Score=23.10 Aligned_cols=43 Identities=14% Similarity=0.222 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHcCCeEEEEEcCCChhH----HHHh-cCCCCEEEEcCC
Q psy12875 45 IAASYVKNIEAAGARVVPILIGQDREY----YAEI-LTQINGVVIPGG 87 (308)
Q Consensus 45 i~~~~~~~l~~aG~~~~~i~~~~~~~~----~~~~-l~~~dGlilpGG 87 (308)
+-..+.+.+++.|..+.......+... ++.. -.++|||++..+
T Consensus 17 ~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~ 64 (266)
T cd06282 17 CVQGIQEEARAAGYSLLLATTDYDAEREADAVETLLRQRVDGLILTVA 64 (266)
T ss_pred HHHHHHHHHHHCCCEEEEeeCCCCHHHHHHHHHHHHhcCCCEEEEecC
Confidence 345667788888999887765433321 1222 247999999544
No 346
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=30.04 E-value=3.1e+02 Score=23.15 Aligned_cols=43 Identities=19% Similarity=0.315 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHcCCeEEEEEcCCChhH----HHHhc-CCCCEEEEcCC
Q psy12875 45 IAASYVKNIEAAGARVVPILIGQDREY----YAEIL-TQINGVVIPGG 87 (308)
Q Consensus 45 i~~~~~~~l~~aG~~~~~i~~~~~~~~----~~~~l-~~~dGlilpGG 87 (308)
+...+.++++..|......+...+.+. +...+ .++||+|+.+.
T Consensus 17 ~~~g~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~ 64 (264)
T cd01537 17 VLKGIEEAAKAAGYQVLLANSQNDAEKQLSALENLIARGVDGIIIAPS 64 (264)
T ss_pred HHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 445667788888988887766544322 22222 37999999765
No 347
>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.
Probab=29.94 E-value=45 Score=27.21 Aligned_cols=26 Identities=15% Similarity=0.286 Sum_probs=20.6
Q ss_pred hhhHhhh-cCCCCeeeeehhHHHHHHH
Q psy12875 165 FSQINEE-GVTFPVLGVCLGFELILQV 190 (308)
Q Consensus 165 ~~~i~~~-~~~~PilGiClG~Qll~~~ 190 (308)
..++++. ...+++.|||-|.++|+++
T Consensus 84 ~~~l~~~~~~~~~i~~ic~G~~~La~a 110 (165)
T cd03134 84 VAFVRAFAEAGKPVAAICHGPWVLISA 110 (165)
T ss_pred HHHHHHHHHcCCeEEEEchHHHHHHhc
Confidence 4456554 5689999999999999985
No 348
>PF08532 Glyco_hydro_42M: Beta-galactosidase trimerisation domain; InterPro: IPR013738 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is non catalytic domain B of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. This domain is related to glutamine amidotransferase enzymes, but the catalytic residues are replaced by non functional amino acids. This domain is involved in trimerisation. ; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process; PDB: 1KWK_A 1KWG_A.
Probab=29.32 E-value=1.3e+02 Score=25.94 Aligned_cols=52 Identities=13% Similarity=0.157 Sum_probs=28.1
Q ss_pred HHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcC
Q psy12875 47 ASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEG 115 (308)
Q Consensus 47 ~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g 115 (308)
..+.++|++.|..+.+++... .++++.-|++|.-.. ++ ....+.++++.++|
T Consensus 33 ~~~y~al~~~gi~vDvv~~~~-------dL~~Ykllv~P~~~~-l~---------~~~~~~L~~yV~~G 84 (207)
T PF08532_consen 33 RGWYRALRELGIPVDVVSPDD-------DLSGYKLLVLPSLYI-LS---------PEFAERLRAYVENG 84 (207)
T ss_dssp HHHHHHHHTTT--EEEE-TTS---------TT-SEEEES--SC------------HHH---HHHHHT-S
T ss_pred HHHHHHHHHcCCceEEecCcC-------CcccCcEEEEeeEEE-EC---------hHHHHHHHHHHHCC
Confidence 467789999999999998543 378899999998641 21 24455666666654
No 349
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=29.23 E-value=3.6e+02 Score=22.94 Aligned_cols=44 Identities=9% Similarity=0.178 Sum_probs=28.3
Q ss_pred chHHHHHHHHHHcCCeEEEEEcCCChhH----HHHh-cCCCCEEEEcCC
Q psy12875 44 YIAASYVKNIEAAGARVVPILIGQDREY----YAEI-LTQINGVVIPGG 87 (308)
Q Consensus 44 ~i~~~~~~~l~~aG~~~~~i~~~~~~~~----~~~~-l~~~dGlilpGG 87 (308)
.+.+.+.+++++.|..+.......+.+. +... -.++||+|+.+.
T Consensus 16 ~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgvi~~~~ 64 (267)
T cd01536 16 AMNKGAEAAAKELGVELIVLDAQNDVSKQIQQIEDLIAQGVDGIIISPV 64 (267)
T ss_pred HHHHHHHHHHHhcCceEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 3556667788888988887765543321 2222 237999998654
No 350
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=29.23 E-value=3.8e+02 Score=23.20 Aligned_cols=43 Identities=16% Similarity=0.232 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHcCCeEEEEEcCCChh----HHHHh-cCCCCEEEEcCC
Q psy12875 45 IAASYVKNIEAAGARVVPILIGQDRE----YYAEI-LTQINGVVIPGG 87 (308)
Q Consensus 45 i~~~~~~~l~~aG~~~~~i~~~~~~~----~~~~~-l~~~dGlilpGG 87 (308)
+-....+.+++.|..+.......+.+ .++.. -.++||+|+.+.
T Consensus 17 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~ 64 (273)
T cd01541 17 IIRGIESVLSEKGYSLLLASTNNDPERERKCLENMLSQGIDGLIIEPT 64 (273)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecc
Confidence 44566778888899887765443332 12222 247999999654
No 351
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=29.22 E-value=1.3e+02 Score=25.93 Aligned_cols=69 Identities=17% Similarity=0.136 Sum_probs=37.2
Q ss_pred HHHHHHHHH-HcCCeEEEEEcCCChhHH-HHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEe
Q psy12875 46 AASYVKNIE-AAGARVVPILIGQDREYY-AEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGV 123 (308)
Q Consensus 46 ~~~~~~~l~-~aG~~~~~i~~~~~~~~~-~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGI 123 (308)
...+.+.++ ..|.++... .+.+.+ +..|+++|.||+.....+. . .....+.+++++++| .+++|+
T Consensus 21 ~~~l~~ll~~~~~~~v~~~---~~~~~~~~~~L~~~Dvvv~~~~~~~~-----l---~~~~~~al~~~v~~G--gglv~l 87 (217)
T PF06283_consen 21 KKALAQLLEESEGFEVTVT---EDPDDLTPENLKGYDVVVFYNTGGDE-----L---TDEQRAALRDYVENG--GGLVGL 87 (217)
T ss_dssp HHHHHHHHHHTTCEEEEEC---CSGGCTSHHCHCT-SEEEEE-SSCCG-----S----HHHHHHHHHHHHTT---EEEEE
T ss_pred HHHHHHHhccCCCEEEEEE---eCcccCChhHhcCCCEEEEECCCCCc-----C---CHHHHHHHHHHHHcC--CCEEEE
Confidence 345566676 456666533 222222 3368999999995543111 1 123445556667755 899999
Q ss_pred chhh
Q psy12875 124 CLGF 127 (308)
Q Consensus 124 C~G~ 127 (308)
..+.
T Consensus 88 H~~~ 91 (217)
T PF06283_consen 88 HGAA 91 (217)
T ss_dssp GGGG
T ss_pred cccc
Confidence 8544
No 352
>PRK12493 magnesium chelatase subunit H; Provisional
Probab=29.21 E-value=2.1e+02 Score=32.21 Aligned_cols=41 Identities=29% Similarity=0.549 Sum_probs=29.2
Q ss_pred CCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcC
Q psy12875 18 TPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIG 66 (308)
Q Consensus 18 ~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~ 66 (308)
+|+|||+...+.. ..+...+++ .+.+.|++.|..|+++...
T Consensus 253 ~p~Vgil~~r~~~-------~~~d~~~~d-alI~~LE~~G~~vipvf~~ 293 (1310)
T PRK12493 253 APTVGLLLQRTHL-------LTGNDAHYV-ALIQELEARGARVIPAYAG 293 (1310)
T ss_pred CCEEEEEEchhhh-------hcCCcHHHH-HHHHHHHHCCCeEEEEEec
Confidence 7999999876542 122334554 7789999999999988654
No 353
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=29.06 E-value=3.7e+02 Score=23.99 Aligned_cols=43 Identities=5% Similarity=0.128 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHcCCeEEEE-EcCCChhH----HHHh-cCCCCEEEEcCC
Q psy12875 45 IAASYVKNIEAAGARVVPI-LIGQDREY----YAEI-LTQINGVVIPGG 87 (308)
Q Consensus 45 i~~~~~~~l~~aG~~~~~i-~~~~~~~~----~~~~-l~~~dGlilpGG 87 (308)
+-..+.+.+++.|..+..+ +...+.+. ++.. -.++||||+.+.
T Consensus 17 i~~gi~~~a~~~g~~v~~~~~~~~d~~~~~~~i~~~~~~~~DgiIi~~~ 65 (298)
T cd06302 17 MEEGAKEAAKELGVDAIYVGPTTADAAGQVQIIEDLIAQGVDAIAVVPN 65 (298)
T ss_pred HHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHHhcCCCEEEEecC
Confidence 4556677788889888765 33333321 2222 247999999754
No 354
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=28.67 E-value=2.7e+02 Score=22.21 Aligned_cols=55 Identities=16% Similarity=0.022 Sum_probs=35.0
Q ss_pred HHHHHHcCCeEEEEEcCCChhHHHH--hcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHH
Q psy12875 50 VKNIEAAGARVVPILIGQDREYYAE--ILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDK 110 (308)
Q Consensus 50 ~~~l~~aG~~~~~i~~~~~~~~~~~--~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~ 110 (308)
..+|+.+|++++......+.++.-+ .-.++|.+.+++-. . .+....+.+.+.+++
T Consensus 23 ~~~l~~~GfeVi~lg~~~s~e~~v~aa~e~~adii~iSsl~----~--~~~~~~~~~~~~L~~ 79 (132)
T TIGR00640 23 ATAYADLGFDVDVGPLFQTPEEIARQAVEADVHVVGVSSLA----G--GHLTLVPALRKELDK 79 (132)
T ss_pred HHHHHhCCcEEEECCCCCCHHHHHHHHHHcCCCEEEEcCch----h--hhHHHHHHHHHHHHh
Confidence 4678899999998887766665432 23478888887642 1 244444455555544
No 355
>PRK12448 dihydroxy-acid dehydratase; Provisional
Probab=28.37 E-value=1.9e+02 Score=29.63 Aligned_cols=45 Identities=18% Similarity=0.200 Sum_probs=29.0
Q ss_pred cCCCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEE
Q psy12875 15 STDTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPIL 64 (308)
Q Consensus 15 ~~~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~ 64 (308)
-..||+|||...++.-.| ...+-.-+.+...+-++++|+.+..++
T Consensus 30 d~~kP~IgI~ns~~e~~p-----ch~hl~~la~~vk~gi~~aGG~p~ef~ 74 (615)
T PRK12448 30 DFGKPIIAVVNSFTQFVP-----GHVHLKDLGQLVAREIEAAGGVAKEFN 74 (615)
T ss_pred HhCCCEEEEEeccccCcC-----chhhHHHHHHHHHHHHHHcCCeeeEec
Confidence 346999999988765311 111222345667788889998877664
No 356
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=28.33 E-value=3e+02 Score=23.55 Aligned_cols=42 Identities=12% Similarity=0.181 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHcCCeEEEEEcCCChhHH----HH-hcCCCCEEEEcC
Q psy12875 45 IAASYVKNIEAAGARVVPILIGQDREYY----AE-ILTQINGVVIPG 86 (308)
Q Consensus 45 i~~~~~~~l~~aG~~~~~i~~~~~~~~~----~~-~l~~~dGlilpG 86 (308)
+-..+.+.+++.|..++......+.+.. +. .-.++||+++.+
T Consensus 17 ~~~~i~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~dgii~~~ 63 (268)
T cd06323 17 LKDGAQKEAKELGYELTVLDAQNDAAKQLNDIEDLITRGVDAIIINP 63 (268)
T ss_pred HHHHHHHHHHHcCceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEcC
Confidence 4456677888889888766544333221 22 124799999853
No 357
>PRK10342 glycerate kinase I; Provisional
Probab=28.28 E-value=1e+02 Score=29.59 Aligned_cols=49 Identities=18% Similarity=0.306 Sum_probs=28.4
Q ss_pred HHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhh
Q psy12875 72 YAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGF 127 (308)
Q Consensus 72 ~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~ 127 (308)
+++.++++| +||+|=+ .++..+.+++..-.+.+.+ .+ .++|+..||--.
T Consensus 278 l~~~l~~AD-LVITGEG-~~D~QTl~GK~p~gVa~~A---~~--~~vPviai~G~~ 326 (381)
T PRK10342 278 LEEHIHDCT-LVITGEG-RIDSQSIHGKVPIGVANVA---KK--YHKPVIGIAGSL 326 (381)
T ss_pred HHHHhccCC-EEEECCC-cCcccccCCccHHHHHHHH---HH--hCCCEEEEeccc
Confidence 456678888 6677744 2332223555443444433 33 349999999754
No 358
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=28.27 E-value=3.8e+02 Score=22.91 Aligned_cols=43 Identities=19% Similarity=0.251 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHcCCeEEEEEcCCChhH----HHHhc-CCCCEEEEcCC
Q psy12875 45 IAASYVKNIEAAGARVVPILIGQDREY----YAEIL-TQINGVVIPGG 87 (308)
Q Consensus 45 i~~~~~~~l~~aG~~~~~i~~~~~~~~----~~~~l-~~~dGlilpGG 87 (308)
+...+.+++++.|..+.......+.+. ++... .++|||++.+.
T Consensus 17 ~~~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~dgiii~~~ 64 (267)
T cd06283 17 VLKGIEDVCRAHGYQVLVCNSDNDPEKEKEYLESLLAYQVDGLIVNPT 64 (267)
T ss_pred HHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCcCEEEEeCC
Confidence 445667788888988876654433322 12222 37999999765
No 359
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=28.02 E-value=3.5e+02 Score=23.35 Aligned_cols=43 Identities=12% Similarity=0.167 Sum_probs=24.4
Q ss_pred hHHHHHHHHHH--cCCeEEEEEcCCChhH----HHH-hcCCCCEEEEcCC
Q psy12875 45 IAASYVKNIEA--AGARVVPILIGQDREY----YAE-ILTQINGVVIPGG 87 (308)
Q Consensus 45 i~~~~~~~l~~--aG~~~~~i~~~~~~~~----~~~-~l~~~dGlilpGG 87 (308)
+-..+.+++++ .|..+.......+.+. ++. .-.++||||+.+.
T Consensus 17 ~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~dgiIi~~~ 66 (271)
T cd06321 17 LAKGAEAAAKKLNPGVKVTVVSADYDLNKQVSQIDNFIAAKVDLILLNAV 66 (271)
T ss_pred HHHHHHHHHHHhCCCeEEEEccCCCCHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 44566778888 5666555443333321 122 2347999999653
No 360
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=27.95 E-value=3.2e+02 Score=23.55 Aligned_cols=43 Identities=14% Similarity=0.268 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHcCCeEEEEEcCCChhH----HHH-hcCCCCEEEEcCC
Q psy12875 45 IAASYVKNIEAAGARVVPILIGQDREY----YAE-ILTQINGVVIPGG 87 (308)
Q Consensus 45 i~~~~~~~l~~aG~~~~~i~~~~~~~~----~~~-~l~~~dGlilpGG 87 (308)
+-....+.+++.|..+.......+.+. ++. .-.++||+++.+.
T Consensus 18 ~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~ 65 (275)
T cd06317 18 YNKAFQAAAEEDGVEVIVLDANGDVARQAAQVEDLIAQKVDGIILWPT 65 (275)
T ss_pred HHHHHHHHHHhcCCEEEEEcCCcCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 445667778888988876654333321 122 1247999999654
No 361
>cd03143 A4_beta-galactosidase_middle_domain A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to beta-galactosidase from Thermus thermophilus. Beta-Galactosidase hydrolyzes the beta-1,4-D-galactosidic linkage of lactose, as well as those of related chromogens, o-nitrophenyl-beta-D-galactopyranoside (ONP-Gal) and 5-bromo-4-chloro-3-indolyl-beta-D-galactoside (X-gal). This A4 beta-galactosidase middle domain lacks the catalytic triad of typical GATase1 domains. The reactive Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in typical GATase1 domains is not conserved in this group.
Probab=27.81 E-value=2.4e+02 Score=22.65 Aligned_cols=53 Identities=17% Similarity=0.120 Sum_probs=36.9
Q ss_pred HHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcC
Q psy12875 46 AASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEG 115 (308)
Q Consensus 46 ~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g 115 (308)
...+.+++.+.|..+.+++... .+.+++-||+|.-.. +. +...+.++++.++|
T Consensus 28 ~~~~~~~l~~~gi~~d~v~~~~-------~l~~y~~vi~P~~~~-~~---------~~~~~~l~~~v~~G 80 (154)
T cd03143 28 ALALYRALRELGIPVDVVPPDA-------DLSGYKLVVLPDLYL-LS---------DATAAALRAYVENG 80 (154)
T ss_pred HHHHHHHHHHCCCCEEEECCCC-------CcccCCEEEECchhc-CC---------HHHHHHHHHHHHCC
Confidence 4567899999999988887322 367899999998742 11 24556667777765
No 362
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=27.71 E-value=1.4e+02 Score=27.03 Aligned_cols=56 Identities=18% Similarity=0.194 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEec
Q psy12875 45 IAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVC 124 (308)
Q Consensus 45 i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC 124 (308)
+...+.++|++.|.++. .+++|.++.-||. - -++..++.+......+|++||-
T Consensus 16 ~~~~l~~~l~~~g~~~~--------------~~~~Dlvi~iGGD--G-----------T~L~a~~~~~~~~~~iPilGIN 68 (265)
T PRK04885 16 VASKLKKYLKDFGFILD--------------EKNPDIVISVGGD--G-----------TLLSAFHRYENQLDKVRFVGVH 68 (265)
T ss_pred HHHHHHHHHHHcCCccC--------------CcCCCEEEEECCc--H-----------HHHHHHHHhcccCCCCeEEEEe
Confidence 45567788888887621 1367999999983 1 2233334333210248999999
Q ss_pred hhh
Q psy12875 125 LGF 127 (308)
Q Consensus 125 ~G~ 127 (308)
.|.
T Consensus 69 ~G~ 71 (265)
T PRK04885 69 TGH 71 (265)
T ss_pred CCC
Confidence 885
No 363
>PRK06131 dihydroxy-acid dehydratase; Validated
Probab=27.43 E-value=1.5e+02 Score=30.01 Aligned_cols=43 Identities=21% Similarity=0.210 Sum_probs=28.6
Q ss_pred CCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEc
Q psy12875 18 TPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILI 65 (308)
Q Consensus 18 ~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~ 65 (308)
||+|||...++.-.| ...+..-+.+...+-++++|+.+..++.
T Consensus 38 kP~IgI~ns~se~~P-----ch~hl~~l~~~vk~gi~~aGg~p~ef~t 80 (571)
T PRK06131 38 RPIIGICNTWSDLNP-----CNAHFRQLAERVKRGVLEAGGFPVEFPV 80 (571)
T ss_pred CCEEEEecccccCcC-----chhhHHHHHHHHHHHHHHcCCEEEecCc
Confidence 999999988765411 1112233556777888899988876643
No 364
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=27.17 E-value=1.7e+02 Score=27.05 Aligned_cols=66 Identities=23% Similarity=0.332 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHcCCeEEEEEcCCChh---HH-HHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccE
Q psy12875 45 IAASYVKNIEAAGARVVPILIGQDRE---YY-AEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPV 120 (308)
Q Consensus 45 i~~~~~~~l~~aG~~~~~i~~~~~~~---~~-~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~Pv 120 (308)
+...+.++|++.|.++.......... .. ......+|.++.-||. - -+.+.++.... .++|+
T Consensus 20 ~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~d~vi~~GGD--G-----------T~l~~~~~~~~--~~~pv 84 (305)
T PRK02645 20 AAERCAKQLEARGCKVLMGPSGPKDNPYPVFLASASELIDLAIVLGGD--G-----------TVLAAARHLAP--HDIPI 84 (305)
T ss_pred HHHHHHHHHHHCCCEEEEecCchhhccccchhhccccCcCEEEEECCc--H-----------HHHHHHHHhcc--CCCCE
Confidence 34566788999998877654321110 01 1122358999988883 1 23334444333 35999
Q ss_pred EEech
Q psy12875 121 LGVCL 125 (308)
Q Consensus 121 lGIC~ 125 (308)
+||-.
T Consensus 85 ~gin~ 89 (305)
T PRK02645 85 LSVNV 89 (305)
T ss_pred EEEec
Confidence 99987
No 365
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=27.10 E-value=3e+02 Score=23.92 Aligned_cols=43 Identities=12% Similarity=0.033 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHcCCeEEEEEcCCChhH----HHHh-cCCCCEEEEcCC
Q psy12875 45 IAASYVKNIEAAGARVVPILIGQDREY----YAEI-LTQINGVVIPGG 87 (308)
Q Consensus 45 i~~~~~~~l~~aG~~~~~i~~~~~~~~----~~~~-l~~~dGlilpGG 87 (308)
+-....+++++.|..+.......+.+. +... -.++||||+.+.
T Consensus 17 ~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 64 (273)
T cd06309 17 ETKSIKDAAEKRGFDLKFADAQQKQENQISAIRSFIAQGVDVIILAPV 64 (273)
T ss_pred HHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 445677888889999887765433322 2222 247999999654
No 366
>PRK09271 flavodoxin; Provisional
Probab=26.87 E-value=3.5e+02 Score=22.04 Aligned_cols=44 Identities=14% Similarity=0.017 Sum_probs=27.2
Q ss_pred cchHHHHHHHHHHcCCeEEEEEcCCCh-hHHHHhcCCCCEEEEcC
Q psy12875 43 SYIAASYVKNIEAAGARVVPILIGQDR-EYYAEILTQINGVVIPG 86 (308)
Q Consensus 43 ~~i~~~~~~~l~~aG~~~~~i~~~~~~-~~~~~~l~~~dGlilpG 86 (308)
..+.+.+.+.++..|.++......... ......+.++|+|+|.-
T Consensus 15 e~~A~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~vilgt 59 (160)
T PRK09271 15 REVAREIEERCEEAGHEVDWVETDVQTLAEYPLDPEDYDLYLLGT 59 (160)
T ss_pred HHHHHHHHHHHHhCCCeeEEEecccccccccccCcccCCEEEEEC
Confidence 456777888898889887655443221 11122345789998843
No 367
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=26.74 E-value=4e+02 Score=22.96 Aligned_cols=43 Identities=12% Similarity=0.057 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHcCCeEEEEEcC--CChhH----HHH-hcCCCCEEEEcCC
Q psy12875 45 IAASYVKNIEAAGARVVPILIG--QDREY----YAE-ILTQINGVVIPGG 87 (308)
Q Consensus 45 i~~~~~~~l~~aG~~~~~i~~~--~~~~~----~~~-~l~~~dGlilpGG 87 (308)
+...+.+++++.|..+...... .+.+. ++. .-.++||+|+.+.
T Consensus 17 ~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgvii~~~ 66 (273)
T cd06310 17 VKAGAEAAAKELGVKVTFQGPASETDVAGQVNLLENAIARGPDAILLAPT 66 (273)
T ss_pred HHHHHHHHHHHcCCEEEEecCccCCCHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 4556678888899988876532 22221 222 2247999999654
No 368
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=26.54 E-value=4.1e+02 Score=23.23 Aligned_cols=42 Identities=24% Similarity=0.106 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHcCCeEEEEEcCCChhH----HHHh-cCCCCEEEEcCC
Q psy12875 45 IAASYVKNIEAAGARVVPILIGQDREY----YAEI-LTQINGVVIPGG 87 (308)
Q Consensus 45 i~~~~~~~l~~aG~~~~~i~~~~~~~~----~~~~-l~~~dGlilpGG 87 (308)
+-+.+.+.+++.|..+...... +.+. +... -.++||||+.+.
T Consensus 17 ~~~gi~~~~~~~g~~~~~~~~~-~~~~~~~~i~~~~~~~~dgiii~~~ 63 (289)
T cd01540 17 EWKFAKKAAKEKGFTVVKIDVP-DGEKVLSAIDNLGAQGAKGFVICVP 63 (289)
T ss_pred HHHHHHHHHHHcCCEEEEccCC-CHHHHHHHHHHHHHcCCCEEEEccC
Confidence 4456678888899888766443 3221 1222 246999999764
No 369
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=26.47 E-value=1.2e+02 Score=28.76 Aligned_cols=56 Identities=18% Similarity=0.338 Sum_probs=35.7
Q ss_pred HHHHHcCCeEEEEEcCCChhHHHHh-------------------------cCCC----CEEEEcCCCCCCCCCCchhHHH
Q psy12875 51 KNIEAAGARVVPILIGQDREYYAEI-------------------------LTQI----NGVVIPGGGTGFDHPNGYADAG 101 (308)
Q Consensus 51 ~~l~~aG~~~~~i~~~~~~~~~~~~-------------------------l~~~----dGlilpGG~~~~~~~~~~~~~~ 101 (308)
+.-.+.|+.++-+.+..+.+.+++. .+.+ -.|++.||+. .+ .
T Consensus 224 RiaaELGADIVKv~yp~~~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~V~ac~ag~vpVviAGG~k-~~--------~ 294 (348)
T PRK09250 224 HLAATIGADIIKQKLPTNNGGYKAINFGKTDDRVYSKLTSDHPIDLVRYQVANCYMGRRGLINSGGAS-KG--------E 294 (348)
T ss_pred HHHHHHcCCEEEecCCCChhhHHHhhcccccccccccccccchHHHHHHHHHhhccCCceEEEeCCCC-CC--------H
Confidence 3334679999999887654444333 4443 5789999973 11 2
Q ss_pred HHHHHHHHHH---HHcC
Q psy12875 102 RQILHLVDKI---NEEG 115 (308)
Q Consensus 102 ~~~~e~~~~~---~~~g 115 (308)
+++++.++++ .+.|
T Consensus 295 ~e~L~~v~~a~~~i~aG 311 (348)
T PRK09250 295 DDLLDAVRTAVINKRAG 311 (348)
T ss_pred HHHHHHHHHHHHhhhcC
Confidence 4567777777 6554
No 370
>PF10758 DUF2586: Protein of unknown function (DUF2586); InterPro: IPR019694 This entry is represented by Bacteriophage HP1, Orf23. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family of proteins has currently has no known function but is thought to be a tail sheath protein.
Probab=26.38 E-value=4.6e+02 Score=25.02 Aligned_cols=106 Identities=13% Similarity=0.076 Sum_probs=57.2
Q ss_pred hHhhhhcccCCCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCe--EEEEEcCCChhHHH-----HhcCCC
Q psy12875 7 LTYISTVTSTDTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGAR--VVPILIGQDREYYA-----EILTQI 79 (308)
Q Consensus 7 ~~~~~~~~~~~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~--~~~i~~~~~~~~~~-----~~l~~~ 79 (308)
++||+.-..+...++-|.++..-+ ...+..++-+.+....+...+|-. ....|...+.+..+ .....+
T Consensus 24 ~Lfig~~~~~~g~~~~~~~~sdld-----~~lg~~ds~lk~~v~aa~~n~gqnw~a~~~~~~~~~~~~~Av~~a~~~~s~ 98 (363)
T PF10758_consen 24 FLFIGRGAKNVGKLLPVNTQSDLD-----AVLGAADSALKTNVKAAQLNAGQNWTAYVAPLASNADWQDAVDKANEVISF 98 (363)
T ss_pred EEEEEecCCcccceEEecCCCcHH-----HHhCCcchHHHHHHHHHHHcCCCCeEEEEEecCCCchHHHHHHHhhccCCe
Confidence 445544445566788888775543 344445676766666666677632 23344444433222 134468
Q ss_pred CEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEech
Q psy12875 80 NGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCL 125 (308)
Q Consensus 80 dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~ 125 (308)
.+|++.|..++. .. ...+-+...+...+ -++|+|.+|.
T Consensus 99 E~Vvi~~~~t~~------a~-~~a~qa~~~eL~~~-~~R~v~fi~~ 136 (363)
T PF10758_consen 99 EFVVIVGPVTDK------AE-WAAAQALAAELLNK-YGRPVFFILA 136 (363)
T ss_pred EEEEEeCCcCCH------HH-HHHHHHHHHHHHHH-hCCeEEEEEe
Confidence 999999875321 11 11222333344442 2489998875
No 371
>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]
Probab=26.17 E-value=55 Score=28.14 Aligned_cols=35 Identities=20% Similarity=0.317 Sum_probs=25.1
Q ss_pred CCCCeEEEEEecCCCceEEEEEEecCCCEEEEeecCCccCc
Q psy12875 257 LTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNAY 297 (308)
Q Consensus 257 l~~~~~via~s~~~~~~~v~ai~~~~~p~~GvQFHPE~~~~ 297 (308)
..++.+++|+-++ . +.|++.+ +++++-||||....
T Consensus 145 vg~~V~vLa~l~~-~---iVav~qg--n~LatsFHPELT~D 179 (194)
T COG0311 145 VGDGVEVLATLDG-R---IVAVKQG--NILATSFHPELTDD 179 (194)
T ss_pred hcCcceEeeeeCC-E---EEEEEeC--CEEEEecCccccCC
Confidence 4457899998544 2 4466655 59999999998743
No 372
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=25.95 E-value=3.3e+02 Score=23.54 Aligned_cols=43 Identities=5% Similarity=0.064 Sum_probs=26.4
Q ss_pred hHHHHHHHHHH-cCCeEEEEEcCCChhH----HHHh-cCCCCEEEEcCC
Q psy12875 45 IAASYVKNIEA-AGARVVPILIGQDREY----YAEI-LTQINGVVIPGG 87 (308)
Q Consensus 45 i~~~~~~~l~~-aG~~~~~i~~~~~~~~----~~~~-l~~~dGlilpGG 87 (308)
+...+.+++++ .|..++......+.+. ++.. -.++||+++.+.
T Consensus 17 ~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 65 (272)
T cd06301 17 LRNAMKEHAKVLGGVELQFEDAKNDVATQLSQVENFIAQGVDAIIVVPV 65 (272)
T ss_pred HHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 45567778888 7888776544333221 2222 237999999654
No 373
>PLN03069 magnesiumprotoporphyrin-IX chelatase subunit H; Provisional
Probab=25.83 E-value=2.9e+02 Score=30.94 Aligned_cols=42 Identities=36% Similarity=0.566 Sum_probs=29.4
Q ss_pred CCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcC
Q psy12875 17 DTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIG 66 (308)
Q Consensus 17 ~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~ 66 (308)
.+|+|||+...... ..+...+++ ...+.|++.|..|+++...
T Consensus 265 ~~p~Vgil~~r~~~-------~~~~~~~id-alI~~LE~~G~~vipvf~~ 306 (1220)
T PLN03069 265 DAPVVGLVLQRSHI-------VTGDDGHYV-AVVMELEARGAKVVPIFAG 306 (1220)
T ss_pred CCCEEEEEechhhh-------hcCCcHHHH-HHHHHHHHCCCeEEEEEec
Confidence 47999999875542 122234444 6789999999999988653
No 374
>PRK00549 competence damage-inducible protein A; Provisional
Probab=25.81 E-value=3e+02 Score=26.62 Aligned_cols=41 Identities=15% Similarity=0.186 Sum_probs=27.3
Q ss_pred HHHHHHHHcCCeEEEEEc-CCChhHH----HHhcCCCCEEEEcCCC
Q psy12875 48 SYVKNIEAAGARVVPILI-GQDREYY----AEILTQINGVVIPGGG 88 (308)
Q Consensus 48 ~~~~~l~~aG~~~~~i~~-~~~~~~~----~~~l~~~dGlilpGG~ 88 (308)
.+.+.|++.|..+..... .++.+.+ ....+.+|-||++||-
T Consensus 24 ~L~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~a~~~~DlVItTGGl 69 (414)
T PRK00549 24 FLSEKLAELGIDVYHQTVVGDNPERLLSALEIAEERSDLIITTGGL 69 (414)
T ss_pred HHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHhccCCCEEEECCCC
Confidence 445778999998775443 3344433 3345678999999885
No 375
>PRK06851 hypothetical protein; Provisional
Probab=25.77 E-value=2.2e+02 Score=27.20 Aligned_cols=52 Identities=21% Similarity=0.123 Sum_probs=36.1
Q ss_pred CCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCC
Q psy12875 18 TPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGG 87 (308)
Q Consensus 18 ~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG 87 (308)
+-++.|+..|... .+-+-..+.+.+.+.|..+...+...++ +++|+|+||.=
T Consensus 214 ~~~~~i~G~pG~G-----------Kstl~~~i~~~a~~~G~~v~~~hC~~dP-------dslD~viIPel 265 (367)
T PRK06851 214 KNRYFLKGRPGTG-----------KSTMLKKIAKAAEERGFDVEVYHCGFDP-------DSLDMVIIPEL 265 (367)
T ss_pred ceEEEEeCCCCCc-----------HHHHHHHHHHHHHhCCCeEEEEeCCCCC-------CCcceEEeccC
Confidence 4556666655432 3555667778888889999988876654 46888888873
No 376
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=25.67 E-value=4.9e+02 Score=23.34 Aligned_cols=61 Identities=11% Similarity=0.221 Sum_probs=35.1
Q ss_pred CCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChhH----HHHh-cCCCCEEEEcCC
Q psy12875 18 TPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREY----YAEI-LTQINGVVIPGG 87 (308)
Q Consensus 18 ~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~----~~~~-l~~~dGlilpGG 87 (308)
...||+....... + ...-+...+.+.+++.|..+.......+.+. ++.. -.++||||+.+.
T Consensus 61 ~~~Igvv~~~~~~-~--------~~~~l~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 126 (328)
T PRK11303 61 TRSIGLIIPDLEN-T--------SYARIAKYLERQARQRGYQLLIACSDDQPDNEMRCAEHLLQRQVDALIVSTS 126 (328)
T ss_pred CceEEEEeCCCCC-c--------hHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 4689988643221 1 1122445667778888998877654333321 1121 247999999764
No 377
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=25.44 E-value=4.4e+02 Score=22.66 Aligned_cols=43 Identities=19% Similarity=0.201 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHcCCeEEEEEcCCChhH----HHHh-cCCCCEEEEcCC
Q psy12875 45 IAASYVKNIEAAGARVVPILIGQDREY----YAEI-LTQINGVVIPGG 87 (308)
Q Consensus 45 i~~~~~~~l~~aG~~~~~i~~~~~~~~----~~~~-l~~~dGlilpGG 87 (308)
+-..+.+.+++.|..+.......+.+. ++.. -.++|||++...
T Consensus 17 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~ 64 (270)
T cd06296 17 VLRGVEEAAAAAGYDVVLSESGRRTSPERQWVERLSARRTDGVILVTP 64 (270)
T ss_pred HHHHHHHHHHHcCCeEEEecCCCchHHHHHHHHHHHHcCCCEEEEecC
Confidence 345566778888988877765443321 2222 236999998654
No 378
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=25.11 E-value=2.2e+02 Score=25.82 Aligned_cols=56 Identities=23% Similarity=0.129 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEec
Q psy12875 45 IAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVC 124 (308)
Q Consensus 45 i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC 124 (308)
+...+.++|++.|..+..- .+++|.++.-||. - -++..++.+... ...|++||-
T Consensus 18 ~~~~l~~~l~~~g~~~~~~------------~~~~D~vi~lGGD--G-----------T~L~a~~~~~~~-~~~pilgIn 71 (264)
T PRK03501 18 KVKPLKKIAEEYGFTVVDH------------PKNANIIVSIGGD--G-----------TFLQAVRKTGFR-EDCLYAGIS 71 (264)
T ss_pred HHHHHHHHHHHCCCEEEcC------------CCCccEEEEECCc--H-----------HHHHHHHHhccc-CCCeEEeEe
Confidence 4556778899999876521 2457999999983 1 123334433221 248999999
Q ss_pred h-h
Q psy12875 125 L-G 126 (308)
Q Consensus 125 ~-G 126 (308)
. |
T Consensus 72 ~~G 74 (264)
T PRK03501 72 TKD 74 (264)
T ss_pred cCC
Confidence 9 6
No 379
>PRK13405 bchH magnesium chelatase subunit H; Provisional
Probab=25.10 E-value=3.9e+02 Score=29.88 Aligned_cols=60 Identities=22% Similarity=0.291 Sum_probs=35.7
Q ss_pred CCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCC--hhHHHHhc-----CCCCEEEE
Q psy12875 17 DTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQD--REYYAEIL-----TQINGVVI 84 (308)
Q Consensus 17 ~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~--~~~~~~~l-----~~~dGlil 84 (308)
.+|+|||+...+.. ..+...++ ....+.|++.|..|+++....- ...+++.+ ..+|+||-
T Consensus 245 ~~p~Vgil~~r~~~-------~~~d~~~~-d~lI~~lE~~G~~vipvf~~gl~~~~~v~~~~~~~~~~~vDaiI~ 311 (1209)
T PRK13405 245 AKGTVGLLLMRSYV-------LAGNTAHY-DGVIEALEARGLRVVPAFASGLDGRPAIEAYFMKDGRPTVDAVVS 311 (1209)
T ss_pred CCCeEEEEEehhhh-------hcCCcHHH-HHHHHHHHHCCCeEEEEEecCccchHHHHHHHhccCCCCccEEEE
Confidence 36888888765432 11222344 3678999999999998865321 11233332 25798884
No 380
>TIGR01196 edd 6-phosphogluconate dehydratase. A close homolog, designated MocB (mannityl opine catabolism), is found in a mannopine catabolism region of a plasmid of Agrobacterium tumefaciens. However, it is not essential for mannopine catabolism, branches within the cluster of 6-phosphogluconate dehydratases (with a short branch length) in a tree rooted by the presence of other dehydyatases. It may represent an authentic 6-phosphogluconate dehydratase, redundant with the chromosomal copy shown to exist in plasmid-cured strains. This model includes mocB above the trusted cutoff, although the designation is somewhat tenuous.
Probab=24.98 E-value=2.5e+02 Score=28.66 Aligned_cols=42 Identities=14% Similarity=0.060 Sum_probs=28.1
Q ss_pred cCCCCEEEEeccccCCCCcccccCCC--CccchHHHHHHHHHHcCCeEEEE
Q psy12875 15 STDTPVIGILAQEYTHIPSYVKAYPN--YTSYIAASYVKNIEAAGARVVPI 63 (308)
Q Consensus 15 ~~~~P~IGI~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~l~~aG~~~~~i 63 (308)
...||.|||.+.+.+- .+. +..-+.+...+.++++|..+...
T Consensus 61 ~~~kP~IgIvns~~d~-------~p~h~hl~~~~~~vk~~i~~aGg~~~~~ 104 (601)
T TIGR01196 61 SMKRPNLAIITAYNDM-------LSAHQPFKNYPDLIKKALQEANAVAQVA 104 (601)
T ss_pred ccCCCEEEEEeccccC-------ccccccHHHHHHHHHHHHHHCCCEeEEe
Confidence 3469999999887653 222 22224556677788889887766
No 381
>PRK03673 hypothetical protein; Provisional
Probab=24.85 E-value=6.4e+02 Score=24.35 Aligned_cols=41 Identities=12% Similarity=0.105 Sum_probs=27.6
Q ss_pred HHHHHHHcCCeEEEEEc-CCChhHH----HHhcCCCCEEEEcCCCC
Q psy12875 49 YVKNIEAAGARVVPILI-GQDREYY----AEILTQINGVVIPGGGT 89 (308)
Q Consensus 49 ~~~~l~~aG~~~~~i~~-~~~~~~~----~~~l~~~dGlilpGG~~ 89 (308)
+.+.|++.|..+..... .++.+.+ ...++.+|-||++||-.
T Consensus 26 la~~L~~~G~~v~~~~~v~D~~~~i~~~l~~a~~~~DlVI~tGGlG 71 (396)
T PRK03673 26 LADFFFHQGLPLSRRNTVGDNLDALVAILRERSQHADVLIVNGGLG 71 (396)
T ss_pred HHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhccCCEEEEcCCCC
Confidence 34678899998865443 4444443 33456799999999853
No 382
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=24.71 E-value=4.6e+02 Score=22.64 Aligned_cols=43 Identities=9% Similarity=0.161 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHc---CCe--EEEEEcCCChhH----HHH-hcCCCCEEEEcCC
Q psy12875 45 IAASYVKNIEAA---GAR--VVPILIGQDREY----YAE-ILTQINGVVIPGG 87 (308)
Q Consensus 45 i~~~~~~~l~~a---G~~--~~~i~~~~~~~~----~~~-~l~~~dGlilpGG 87 (308)
+-..+.+.+++. |.. +.+.....+.+. +.. .-.++||||+.+.
T Consensus 17 ~~~~i~~~~~~~~~~g~~~~l~i~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~ 69 (272)
T cd06300 17 MLDEFKAQAKELKKAGLISEFIVTSADGDVAQQIADIRNLIAQGVDAIIINPA 69 (272)
T ss_pred HHHHHHHHHHhhhccCCeeEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 445666777777 874 344333323221 222 2348999999664
No 383
>PF09897 DUF2124: Uncharacterized protein conserved in archaea (DUF2124); InterPro: IPR009183 There are currently no experimental data for members of this group of archaeal proteins, nor do they exhibit features indicative of any function.; PDB: 2R47_D.
Probab=24.62 E-value=49 Score=27.25 Aligned_cols=45 Identities=20% Similarity=0.335 Sum_probs=27.5
Q ss_pred CCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875 79 INGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQV 133 (308)
Q Consensus 79 ~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~ 133 (308)
.|.|++.||-+ -| .+.-...++.+.+.+... ..+.|||. |-|..-
T Consensus 81 ~D~vVlmGGLA--MP--~~~v~~e~v~~li~ki~~----~~iiGiCF--ms~F~k 125 (147)
T PF09897_consen 81 PDVVVLMGGLA--MP--KSGVTPEDVNELIKKISP----KKIIGICF--MSMFEK 125 (147)
T ss_dssp EEEEEEEGGGG--ST--TTS--HHHHHHHHHHHEE----EEEEEEEE--TTHHHH
T ss_pred CCEEEEEcccc--cC--CCCCCHHHHHHHHHHhCc----CCEEEEeh--HHHHHH
Confidence 89999999953 23 244444566666665543 34999996 444444
No 384
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=24.19 E-value=4.7e+02 Score=22.66 Aligned_cols=43 Identities=14% Similarity=0.108 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHc-----CCeEEEEEcCCChhH----HHHhc-CCCCEEEEcCC
Q psy12875 45 IAASYVKNIEAA-----GARVVPILIGQDREY----YAEIL-TQINGVVIPGG 87 (308)
Q Consensus 45 i~~~~~~~l~~a-----G~~~~~i~~~~~~~~----~~~~l-~~~dGlilpGG 87 (308)
+.....+.+++. |..+.......+.+. ++... .++|||++.+.
T Consensus 17 ~~~gi~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vDgiii~~~ 69 (274)
T cd06311 17 IVWHAQAAAKKLEAAYPDVEFILVTASNDTEQQNAQQDLLINRKIDALVILPF 69 (274)
T ss_pred HHHHHHHHHHHhhhhCCCeEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 344556666665 456555543333321 12233 36999999654
No 385
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=24.19 E-value=94 Score=27.91 Aligned_cols=37 Identities=22% Similarity=0.311 Sum_probs=24.8
Q ss_pred cCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhh
Q psy12875 76 LTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGF 127 (308)
Q Consensus 76 l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~ 127 (308)
++++|.++.-||. - -++..++.+.. ..+||+||-.|.
T Consensus 23 ~~~~Dlvi~iGGD--G-----------TlL~a~~~~~~--~~~PvlGIN~G~ 59 (246)
T PRK04761 23 IEEADVIVALGGD--G-----------FMLQTLHRYMN--SGKPVYGMNRGS 59 (246)
T ss_pred cccCCEEEEECCC--H-----------HHHHHHHHhcC--CCCeEEEEeCCC
Confidence 4467999999983 1 23444444444 359999999885
No 386
>cd06272 PBP1_hexuronate_repressor_like Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor
Probab=23.89 E-value=4.3e+02 Score=22.65 Aligned_cols=43 Identities=16% Similarity=0.166 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHcCCeEEEEEcCCChhHHHHhc-CCCCEEEEcCC
Q psy12875 45 IAASYVKNIEAAGARVVPILIGQDREYYAEIL-TQINGVVIPGG 87 (308)
Q Consensus 45 i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l-~~~dGlilpGG 87 (308)
+-..+.+.+++.|..+.........+..+... .++|||++.+.
T Consensus 17 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~ 60 (261)
T cd06272 17 LVTGINQAISKNGYNMNVSITPSLAEAEDLFKENRFDGVIIFGE 60 (261)
T ss_pred HHHHHHHHHHHcCCEEEEEecccHHHHHHHHHHcCcCEEEEeCC
Confidence 34566777788898877765432222222222 37999999754
No 387
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=23.62 E-value=6.2e+02 Score=23.76 Aligned_cols=88 Identities=15% Similarity=0.191 Sum_probs=54.6
Q ss_pred CCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChh---HHHHhcCCCCEEEEcCCCCCCCC
Q psy12875 17 DTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDRE---YYAEILTQINGVVIPGGGTGFDH 93 (308)
Q Consensus 17 ~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~---~~~~~l~~~dGlilpGG~~~~~~ 93 (308)
+.-.||++..+...+ ....-+.+.+.++..|.+++........+ .....+.+.|.|++|=...
T Consensus 158 nak~Igv~Y~p~E~n----------s~~l~eelk~~A~~~Gl~vve~~v~~~ndi~~a~~~l~g~~d~i~~p~dn~---- 223 (322)
T COG2984 158 NAKSIGVLYNPGEAN----------SVSLVEELKKEARKAGLEVVEAAVTSVNDIPRAVQALLGKVDVIYIPTDNL---- 223 (322)
T ss_pred CCeeEEEEeCCCCcc----------cHHHHHHHHHHHHHCCCEEEEEecCcccccHHHHHHhcCCCcEEEEecchH----
Confidence 356788888876541 12345677888899999999888755433 1233557889999885421
Q ss_pred CCchhHHHHHHHHH-HHHHHHcCCCccEEEechhh
Q psy12875 94 PNGYADAGRQILHL-VDKINEEGVTFPVLGVCLGF 127 (308)
Q Consensus 94 ~~~~~~~~~~~~e~-~~~~~~~g~~~PvlGIC~G~ 127 (308)
....++. +..+++ .++|+++-=-++
T Consensus 224 -------i~s~~~~l~~~a~~--~kiPli~sd~~~ 249 (322)
T COG2984 224 -------IVSAIESLLQVANK--AKIPLIASDTSS 249 (322)
T ss_pred -------HHHHHHHHHHHHHH--hCCCeecCCHHH
Confidence 1123333 344555 459998654443
No 388
>PRK03670 competence damage-inducible protein A; Provisional
Probab=23.30 E-value=2.2e+02 Score=25.54 Aligned_cols=41 Identities=27% Similarity=0.256 Sum_probs=26.3
Q ss_pred HHHHHHHHcCCeEEEEEcC-CChhHHHH----hcC-CCCEEEEcCCC
Q psy12875 48 SYVKNIEAAGARVVPILIG-QDREYYAE----ILT-QINGVVIPGGG 88 (308)
Q Consensus 48 ~~~~~l~~aG~~~~~i~~~-~~~~~~~~----~l~-~~dGlilpGG~ 88 (308)
.+.++|+..|..+.....- ++.+.+.+ .++ .+|-||++||-
T Consensus 24 ~la~~L~~~G~~v~~~~iV~Dd~~~I~~~l~~a~~~~~DlVIttGGl 70 (252)
T PRK03670 24 FIAQKLTEKGYWVRRITTVGDDVEEIKSVVLEILSRKPEVLVISGGL 70 (252)
T ss_pred HHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhhCCCCEEEECCCc
Confidence 3457799999988755443 33333332 334 47999999885
No 389
>TIGR00200 cinA_nterm competence/damage-inducible protein CinA N-terminal domain. cinA is a DNA damage- or competence-inducible protein that is polycistronic with recA in a number of species
Probab=23.19 E-value=2e+02 Score=27.97 Aligned_cols=41 Identities=12% Similarity=0.114 Sum_probs=27.7
Q ss_pred HHHHHHHHcCCeEEEEEc-CCChhHH----HHhcCCCCEEEEcCCC
Q psy12875 48 SYVKNIEAAGARVVPILI-GQDREYY----AEILTQINGVVIPGGG 88 (308)
Q Consensus 48 ~~~~~l~~aG~~~~~i~~-~~~~~~~----~~~l~~~dGlilpGG~ 88 (308)
.+.++|++.|.++..... .++.+.+ ...++.+|-||++||-
T Consensus 24 ~l~~~L~~~G~~v~~~~~v~Dd~~~i~~~l~~a~~~~DlVIttGGl 69 (413)
T TIGR00200 24 WLADFLAHQGLPLSRRTTVGDNPERLKTIIRIASERADVLIFNGGL 69 (413)
T ss_pred HHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 345778999998875543 3333333 3345679999999985
No 390
>cd06288 PBP1_sucrose_transcription_regulator Ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=22.91 E-value=2.7e+02 Score=23.93 Aligned_cols=43 Identities=14% Similarity=0.210 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHcCCeEEEEEcCCChhH----HHHh-cCCCCEEEEcCC
Q psy12875 45 IAASYVKNIEAAGARVVPILIGQDREY----YAEI-LTQINGVVIPGG 87 (308)
Q Consensus 45 i~~~~~~~l~~aG~~~~~i~~~~~~~~----~~~~-l~~~dGlilpGG 87 (308)
+-..+.+.+++.|..+.......+.+. ++.. -.++||||+.+.
T Consensus 18 ~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~dgiii~~~ 65 (269)
T cd06288 18 IILGAQDAAREHGYLLLVVNTGGDDELEAEAVEALLDHRVDGIIYATM 65 (269)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 345667788888998877765544321 1222 236899999764
No 391
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=22.80 E-value=4.8e+02 Score=22.24 Aligned_cols=43 Identities=23% Similarity=0.312 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHcCCeEEEEEcCCChhH----HHHh-cCCCCEEEEcCC
Q psy12875 45 IAASYVKNIEAAGARVVPILIGQDREY----YAEI-LTQINGVVIPGG 87 (308)
Q Consensus 45 i~~~~~~~l~~aG~~~~~i~~~~~~~~----~~~~-l~~~dGlilpGG 87 (308)
+-..+.+++++.|..+.......+.+. ++.. -.++||+++.+.
T Consensus 17 ~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~ 64 (268)
T cd06289 17 LAAGLEEVLEEAGYTVFLANSGEDVERQEQLLSTMLEHGVAGIILCPA 64 (268)
T ss_pred HHHHHHHHHHHcCCeEEEecCCCChHHHHHHHHHHHHcCCCEEEEeCC
Confidence 344566777888988765543322221 2222 246999999754
No 392
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=22.72 E-value=5.5e+02 Score=22.89 Aligned_cols=43 Identities=14% Similarity=0.180 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHcCCeEEEEEcCCChh----HHHHhc-C--CCCEEEEcCC
Q psy12875 45 IAASYVKNIEAAGARVVPILIGQDRE----YYAEIL-T--QINGVVIPGG 87 (308)
Q Consensus 45 i~~~~~~~l~~aG~~~~~i~~~~~~~----~~~~~l-~--~~dGlilpGG 87 (308)
+...+.+.+++.|..+.......+.+ .++..+ . ++||||+.+.
T Consensus 18 ~~~gi~~~~~~~g~~v~~~~~~~~~~~~~~~i~~~~~~~~~vdgiIi~~~ 67 (305)
T cd06324 18 VARFMQAAADDLGIELEVLYAERDRFLMLQQARTILQRPDKPDALIFTNE 67 (305)
T ss_pred HHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHhccCCCEEEEcCC
Confidence 34456677888899887775443332 122333 3 7999999644
No 393
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=22.70 E-value=2.9e+02 Score=24.75 Aligned_cols=59 Identities=17% Similarity=0.108 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEec
Q psy12875 45 IAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVC 124 (308)
Q Consensus 45 i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC 124 (308)
+...+.+++.+.|..+....... ....++|.++.-||. - .+ +..++.+ .+||+||-
T Consensus 14 ~~~~~~~~l~~~~~~~~~~~~~~------~~~~~~d~vi~iGGD--G----T~-------L~a~~~~-----~~Pilgin 69 (256)
T PRK14075 14 EAKFLKEKISKEHEVVEFCEASA------SGKVTADLIIVVGGD--G----TV-------LKAAKKV-----GTPLVGFK 69 (256)
T ss_pred HHHHHHHHHHHcCCeeEeecccc------cccCCCCEEEEECCc--H----HH-------HHHHHHc-----CCCEEEEe
Confidence 34566778888887665332111 123578999999983 1 22 2223322 38999999
Q ss_pred hhh
Q psy12875 125 LGF 127 (308)
Q Consensus 125 ~G~ 127 (308)
.|.
T Consensus 70 ~G~ 72 (256)
T PRK14075 70 AGR 72 (256)
T ss_pred CCC
Confidence 885
No 394
>PF01220 DHquinase_II: Dehydroquinase class II; InterPro: IPR001874 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. Class-II enzymes are homododecameric enzymes of about 17 kDa. They are found in some bacteria such as actinomycetales [, ] and some fungi where they act in a catabolic pathway that allows the use of quinic acid as a carbon source.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 3N8K_J 3N7A_I 3N87_F 3N8N_H 3N86_N 1H0S_A 3N59_J 1H05_A 1H0R_A 2Y71_A ....
Probab=22.49 E-value=3.9e+02 Score=21.83 Aligned_cols=45 Identities=20% Similarity=0.303 Sum_probs=27.6
Q ss_pred chHHHHHHHHHHcCCeEEEEEcCCChhH---HHHhcCCCCEEEE-cCCC
Q psy12875 44 YIAASYVKNIEAAGARVVPILIGQDREY---YAEILTQINGVVI-PGGG 88 (308)
Q Consensus 44 ~i~~~~~~~l~~aG~~~~~i~~~~~~~~---~~~~l~~~dGlil-pGG~ 88 (308)
.+.+...+..++.|.++...-.+..-+- +.+..+++||+|+ ||+-
T Consensus 29 ~i~~~~~~~a~~~g~~v~~~QSN~EGelid~I~~a~~~~dgiIINpga~ 77 (140)
T PF01220_consen 29 DIEQKCKETAAELGVEVEFFQSNHEGELIDWIHEARDDVDGIIINPGAY 77 (140)
T ss_dssp HHHHHHHHHHHHTTEEEEEEE-SSHHHHHHHHHHHTCTTSEEEEE-GGG
T ss_pred HHHHHHHHHHHHCCCeEEEEecCCHHHHHHHHHHHHhhCCEEEEccchh
Confidence 3556666666777888776664443332 2334557999999 8874
No 395
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=22.45 E-value=1.7e+02 Score=24.03 Aligned_cols=36 Identities=22% Similarity=0.333 Sum_probs=22.5
Q ss_pred CCCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEE
Q psy12875 16 TDTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVV 61 (308)
Q Consensus 16 ~~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~ 61 (308)
..+|+|||.+--... ..+.-+. .-.++|+.+|++-+
T Consensus 88 f~~pvIGVITK~Dl~---------~~~~~i~-~a~~~L~~aG~~~i 123 (143)
T PF10662_consen 88 FNKPVIGVITKIDLP---------SDDANIE-RAKKWLKNAGVKEI 123 (143)
T ss_pred cCCCEEEEEECccCc---------cchhhHH-HHHHHHHHcCCCCe
Confidence 368999999875432 0012232 33589999998643
No 396
>PRK05568 flavodoxin; Provisional
Probab=22.20 E-value=2.9e+02 Score=21.66 Aligned_cols=41 Identities=12% Similarity=0.132 Sum_probs=29.0
Q ss_pred cchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcC
Q psy12875 43 SYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPG 86 (308)
Q Consensus 43 ~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpG 86 (308)
..+.+.+.+.+++.|.++.++.+...+. ..+.++|+|+|--
T Consensus 16 ~~~a~~i~~~~~~~g~~v~~~~~~~~~~---~~~~~~d~iilgs 56 (142)
T PRK05568 16 EAMANLIAEGAKENGAEVKLLNVSEASV---DDVKGADVVALGS 56 (142)
T ss_pred HHHHHHHHHHHHHCCCeEEEEECCCCCH---HHHHhCCEEEEEC
Confidence 4566777788888899888887654332 1467899988743
No 397
>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=22.19 E-value=2.7e+02 Score=23.99 Aligned_cols=43 Identities=19% Similarity=0.217 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHcCCeEEEEEcCCChhHH----HHh-cCCCCEEEEcCC
Q psy12875 45 IAASYVKNIEAAGARVVPILIGQDREYY----AEI-LTQINGVVIPGG 87 (308)
Q Consensus 45 i~~~~~~~l~~aG~~~~~i~~~~~~~~~----~~~-l~~~dGlilpGG 87 (308)
+-..+.+.+++.|..++......+.+.. +.. -.++||||+.+.
T Consensus 17 ~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~ 64 (263)
T cd06280 17 VSRAVEDAAYRAGLRVILCNTDEDPEKEAMYLELMEEERVTGVIFAPT 64 (263)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 4456678888899998876654443321 222 236999999754
No 398
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=22.13 E-value=5.2e+02 Score=22.31 Aligned_cols=43 Identities=5% Similarity=0.074 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHc-CCeEEEEEcCCChhH----HHHh-cCCCCEEEEcCC
Q psy12875 45 IAASYVKNIEAA-GARVVPILIGQDREY----YAEI-LTQINGVVIPGG 87 (308)
Q Consensus 45 i~~~~~~~l~~a-G~~~~~i~~~~~~~~----~~~~-l~~~dGlilpGG 87 (308)
+.....+.+++. |..+.......+.+. ++.. -.++|||++.+.
T Consensus 17 ~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~ 65 (270)
T cd06308 17 MNDEIQREASNYPDVELIIADAADDNSKQVADIENFIRQGVDLLIISPN 65 (270)
T ss_pred HHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhCCCEEEEecC
Confidence 344556677775 788776654333321 2222 247899999754
No 399
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=22.10 E-value=90 Score=27.36 Aligned_cols=28 Identities=7% Similarity=0.142 Sum_probs=21.8
Q ss_pred hhhHhhh-cCCCCeeeeehhHHHHHHHhC
Q psy12875 165 FSQINEE-GVTFPVLGVCLGFELILQVSN 192 (308)
Q Consensus 165 ~~~i~~~-~~~~PilGiClG~Qll~~~~G 192 (308)
...++++ ..++|+..||-|-++|+.+++
T Consensus 118 ~~lv~~f~~~gK~vaAIChgp~iL~~~~~ 146 (217)
T PRK11780 118 KALVRAFHQAGKPIGFICIAPAMLPKILG 146 (217)
T ss_pred HHHHHHHHHCCCEEEEECHHHHHHHHHhc
Confidence 3445554 568899999999999999863
No 400
>TIGR00110 ilvD dihydroxy-acid dehydratase. This model generates scores of up to 150 bits vs. 6-phosphogluconate dehydratase, a homologous enzyme.
Probab=21.44 E-value=2.9e+02 Score=27.89 Aligned_cols=45 Identities=24% Similarity=0.225 Sum_probs=30.0
Q ss_pred CCCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEc
Q psy12875 16 TDTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILI 65 (308)
Q Consensus 16 ~~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~ 65 (308)
..||+|||...++.-.| ...+..-+.+...+-++++|+.+..++.
T Consensus 9 ~~kP~IgI~ns~~e~~p-----ch~hl~~l~~~vk~gv~~aGg~p~ef~t 53 (535)
T TIGR00110 9 FGKPFIGVANSYTTIVP-----GHMHLRDLAQAVKEGIEAAGGVAFEFNT 53 (535)
T ss_pred hCCCEEEEEeccccCcC-----chhhHHHHHHHHHHHHHHcCCeeEEecC
Confidence 36999999988765421 1112233456777888899998887653
No 401
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=21.26 E-value=5.6e+02 Score=22.42 Aligned_cols=43 Identities=14% Similarity=0.119 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHcCCeEEEEEcCCChhH----HHH-hcCCCCEEEEcCC
Q psy12875 45 IAASYVKNIEAAGARVVPILIGQDREY----YAE-ILTQINGVVIPGG 87 (308)
Q Consensus 45 i~~~~~~~l~~aG~~~~~i~~~~~~~~----~~~-~l~~~dGlilpGG 87 (308)
+...+.+.+++.|..+.......+.+. ++. .-.++||||+.+.
T Consensus 18 ~~~gi~~~a~~~gy~~~~~~~~~~~~~~~~~i~~l~~~~vdgiil~~~ 65 (280)
T cd06315 18 VGEGVREAAKAIGWNLRILDGRGSEAGQAAALNQAIALKPDGIVLGGV 65 (280)
T ss_pred HHHHHHHHHHHcCcEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 445667788888988776644333322 122 2357999999864
No 402
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=21.21 E-value=5.4e+02 Score=22.22 Aligned_cols=43 Identities=14% Similarity=0.055 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHcCCeEEEEEcCC-ChhHH----HH-hcCCCCEEEEcCC
Q psy12875 45 IAASYVKNIEAAGARVVPILIGQ-DREYY----AE-ILTQINGVVIPGG 87 (308)
Q Consensus 45 i~~~~~~~l~~aG~~~~~i~~~~-~~~~~----~~-~l~~~dGlilpGG 87 (308)
+...+.+++++.|..+....... +.+.. +. .-.++||+++.+.
T Consensus 18 ~~~g~~~~~~~~g~~v~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 66 (271)
T cd06312 18 VKNGAEDAAKDLGVDVEYRGPETFDVADMARLIEAAIAAKPDGIVVTIP 66 (271)
T ss_pred HHHHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 44566778888899888776544 33211 12 1247999999654
No 403
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=21.20 E-value=5.5e+02 Score=22.27 Aligned_cols=43 Identities=7% Similarity=0.106 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHcCCeEEEEEcCC--Chh----HHHHh-cCCCCEEEEcCC
Q psy12875 45 IAASYVKNIEAAGARVVPILIGQ--DRE----YYAEI-LTQINGVVIPGG 87 (308)
Q Consensus 45 i~~~~~~~l~~aG~~~~~i~~~~--~~~----~~~~~-l~~~dGlilpGG 87 (308)
+...+.+.++..|..+....... +.+ .++.. -.++||||+.+.
T Consensus 17 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiI~~~~ 66 (268)
T cd06306 17 VNYGMVEEAKRLGVSLKLLEAGGYPNLAKQIAQLEDCAAWGADAILLGAV 66 (268)
T ss_pred HHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 44566788888999988765432 221 12222 247999999754
No 404
>KOG2371|consensus
Probab=20.82 E-value=2.3e+02 Score=27.10 Aligned_cols=81 Identities=12% Similarity=0.112 Sum_probs=43.9
Q ss_pred hhcccCCCCEEEEeccccCCCCcccccCCCCccchH-HHHHHHHHHcCCeEEEEEc-CCChhH----HHHhcCCCCEEEE
Q psy12875 11 STVTSTDTPVIGILAQEYTHIPSYVKAYPNYTSYIA-ASYVKNIEAAGARVVPILI-GQDREY----YAEILTQINGVVI 84 (308)
Q Consensus 11 ~~~~~~~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~l~~aG~~~~~i~~-~~~~~~----~~~~l~~~dGlil 84 (308)
..+....+|+|.|...-+... +-....++-..-.+ ...+..+.+.|+.++-.-. .++.+. +.+..+..|-|+-
T Consensus 182 ~~v~iykkpvVtV~sTgSel~-~~d~~~pg~v~~~n~s~l~~l~~~~Gf~~i~~gvv~D~~~~i~e~L~e~~~~aDvIlT 260 (411)
T KOG2371|consen 182 VQVEIYKKPVVTVSSTGSELN-SPDRSGPGMVRDSNRSQLLELFQEHGFTAIDAGVVPDDVTRIKEKLREASSFADVILT 260 (411)
T ss_pred cccceecccEEEEeecccccc-CccccCCceeeecchHHHHHHHHHhCccccccccccCcHHHHHHHHHHhhhhccEEEe
Confidence 677778899999996655431 00111222111223 3456777888887543221 222222 3334556788888
Q ss_pred cCCCCCCCC
Q psy12875 85 PGGGTGFDH 93 (308)
Q Consensus 85 pGG~~~~~~ 93 (308)
+||-+ +.+
T Consensus 261 tGGvs-m~~ 268 (411)
T KOG2371|consen 261 TGGVS-MGP 268 (411)
T ss_pred cCCcc-ccc
Confidence 88863 444
No 405
>PF13941 MutL: MutL protein
Probab=20.80 E-value=4.4e+02 Score=26.04 Aligned_cols=44 Identities=25% Similarity=0.320 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHcCCeEEEEE-cCCChhHHHHhc-CCCCEEEEcCCC
Q psy12875 45 IAASYVKNIEAAGARVVPIL-IGQDREYYAEIL-TQINGVVIPGGG 88 (308)
Q Consensus 45 i~~~~~~~l~~aG~~~~~i~-~~~~~~~~~~~l-~~~dGlilpGG~ 88 (308)
..++-.++...+|+++..+. +.-+..+++... .+.|.|++.||-
T Consensus 89 Ta~AAk~AAlgAGA~V~~v~s~~l~~~~l~~i~~~~PDiILLaGGt 134 (457)
T PF13941_consen 89 TAEAAKRAALGAGARVLQVYSYELTEEDLEEIREIRPDIILLAGGT 134 (457)
T ss_pred HHHHHHHHHhcCCcEEEEEeccCCCHHHHHHHhccCCCEEEEeCCc
Confidence 33444455556788887543 444455565533 378999999995
No 406
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=20.62 E-value=5.4e+02 Score=21.93 Aligned_cols=40 Identities=23% Similarity=0.221 Sum_probs=28.7
Q ss_pred HHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCC
Q psy12875 48 SYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGG 88 (308)
Q Consensus 48 ~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~ 88 (308)
...+.++..|++++...+. +.+.+.+.++++|.+++.-+.
T Consensus 35 ~~~~~l~~~g~~vv~~d~~-~~~~l~~al~g~d~v~~~~~~ 74 (233)
T PF05368_consen 35 DRAQQLQALGAEVVEADYD-DPESLVAALKGVDAVFSVTPP 74 (233)
T ss_dssp HHHHHHHHTTTEEEES-TT--HHHHHHHHTTCSEEEEESSC
T ss_pred hhhhhhhcccceEeecccC-CHHHHHHHHcCCceEEeecCc
Confidence 4467788899988766554 445677789999999996654
No 407
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=20.28 E-value=1.3e+02 Score=27.23 Aligned_cols=36 Identities=17% Similarity=0.210 Sum_probs=23.7
Q ss_pred CCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhh
Q psy12875 77 TQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGF 127 (308)
Q Consensus 77 ~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~ 127 (308)
+++|.++.-||. - -++..++.+.. ..+||+||-.|.
T Consensus 32 ~~~D~vi~iGGD--G-----------T~L~a~~~~~~--~~iPilGIN~G~ 67 (259)
T PRK00561 32 DGADYLFVLGGD--G-----------FFVSTAANYNC--AGCKVVGINTGH 67 (259)
T ss_pred CCCCEEEEECCc--H-----------HHHHHHHHhcC--CCCcEEEEecCC
Confidence 468999999983 1 12333444333 459999999884
No 408
>PF02110 HK: Hydroxyethylthiazole kinase family; InterPro: IPR000417 Thiamine pyrophosphate (TPP), a required cofactor for many enzymes in the cell, is synthesised de novo in Salmonella typhimurium []. Five kinase activities have been implicated in TPP synthesis, which involves joining a 4-methyl-5-(beta-hydroxyethyl)thiazole (THZ) moiety and a 4-amino-5- hydroxymethyl-2-methylpyrimidine (HMP) moiety [, ]. THZ kinase (2.7.1.50 from EC) activity is involved in the salvage synthesis of TH-P from the thiazole: 2-methyl-4-amino-5-hydroxymethylpyrimidine diphosphate + 4-4-methyl-5-(2-phosphonooxyethyl)-thiazole = pyrophosphate + thiamin monophosphate Hydroxyethylthiazole kinase expression is regulated at the mRNA level by intracellular thiamin pyrophosphate [].; GO: 0004417 hydroxyethylthiazole kinase activity, 0009228 thiamine biosynthetic process; PDB: 1EKK_A 1ESQ_C 1C3Q_B 1ESJ_A 1EKQ_B 3HPD_A 3DZV_A 3NL5_A 3NL2_A 3NM1_A ....
Probab=20.20 E-value=4.2e+02 Score=23.78 Aligned_cols=59 Identities=20% Similarity=0.181 Sum_probs=34.1
Q ss_pred HHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEE-cCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEE
Q psy12875 50 VKNIEAAGARVVPILIGQDREYYAEILTQINGVVI-PGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVL 121 (308)
Q Consensus 50 ~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlil-pGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~Pvl 121 (308)
.+.+-..|+.|.+-.. +++.++.....|++++ .|-. ++ +..+......+.+.+. ++|+.
T Consensus 24 AN~~LA~GasPiMa~~---~~E~~e~~~~a~al~iNiGTl---~~-----~~~~~m~~A~~~A~~~--~~PvV 83 (246)
T PF02110_consen 24 ANALLAIGASPIMAEA---PEEVEEFASIADALVINIGTL---TD-----ERIEAMKKAAKAANEL--GIPVV 83 (246)
T ss_dssp HHHHHHCTSEEEE--S---TTTHHHHHHCTSEEEEESTTS---SH-----HHHHHHHHHHHHHHHT--T--EE
T ss_pred HHHHHHcCCCccccCC---HHHHHHHHHHcCEEEEECCCC---CH-----hHHHHHHHHHHHHHHc--CCCEE
Confidence 4788899999997764 3456666678899999 6643 11 1122333334556664 48886
No 409
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=20.15 E-value=2.7e+02 Score=24.98 Aligned_cols=60 Identities=15% Similarity=0.328 Sum_probs=38.7
Q ss_pred CEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChhHH---HHh-cCCCCEEEEcCC
Q psy12875 19 PVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYY---AEI-LTQINGVVIPGG 87 (308)
Q Consensus 19 P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~---~~~-l~~~dGlilpGG 87 (308)
.+|||......+ |. ..-+-..+.+.+++.|..+.......+.+.. +.. -.++||+|+.+.
T Consensus 2 ~~IGvivp~~~n-pf--------f~~ii~gIe~~a~~~Gy~l~l~~t~~~~~~e~~i~~l~~~~vDGiI~~s~ 65 (279)
T PF00532_consen 2 KTIGVIVPDISN-PF--------FAEIIRGIEQEAREHGYQLLLCNTGDDEEKEEYIELLLQRRVDGIILASS 65 (279)
T ss_dssp CEEEEEESSSTS-HH--------HHHHHHHHHHHHHHTTCEEEEEEETTTHHHHHHHHHHHHTTSSEEEEESS
T ss_pred CEEEEEECCCCC-cH--------HHHHHHHHHHHHHHcCCEEEEecCCCchHHHHHHHHHHhcCCCEEEEecc
Confidence 478888775543 11 1224567778888999999888766554422 111 247999999854
No 410
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=20.09 E-value=3.8e+02 Score=19.99 Aligned_cols=66 Identities=20% Similarity=0.080 Sum_probs=38.6
Q ss_pred ccchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEE
Q psy12875 42 TSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVL 121 (308)
Q Consensus 42 ~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~Pvl 121 (308)
.+.+.....+.+++.|..+.+.... ..+++....++|.|+ .+.. .++.++.+++..+. .++||.
T Consensus 16 SS~l~~k~~~~~~~~gi~~~v~a~~--~~~~~~~~~~~Dvil-l~pq------------i~~~~~~i~~~~~~-~~ipv~ 79 (95)
T TIGR00853 16 TSLLVNKMNKAAEEYGVPVKIAAGS--YGAAGEKLDDADVVL-LAPQ------------VAYMLPDLKKETDK-KGIPVE 79 (95)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEec--HHHHHhhcCCCCEEE-ECch------------HHHHHHHHHHHhhh-cCCCEE
Confidence 3456678888999999877655543 234555667888554 4442 12344445444332 347887
Q ss_pred Ee
Q psy12875 122 GV 123 (308)
Q Consensus 122 GI 123 (308)
-|
T Consensus 80 ~I 81 (95)
T TIGR00853 80 VI 81 (95)
T ss_pred Ee
Confidence 54
No 411
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=20.01 E-value=3.1e+02 Score=23.63 Aligned_cols=38 Identities=21% Similarity=0.189 Sum_probs=25.2
Q ss_pred HHHHHHHHcCCeEEE-EEcCCChhHHHHhcCCCCEEEEc
Q psy12875 48 SYVKNIEAAGARVVP-ILIGQDREYYAEILTQINGVVIP 85 (308)
Q Consensus 48 ~~~~~l~~aG~~~~~-i~~~~~~~~~~~~l~~~dGlilp 85 (308)
...+.++++|..+=+ +....+.+.+...+..+|.|++.
T Consensus 96 ~~i~~ik~~g~k~GialnP~T~~~~~~~~l~~vD~VlvM 134 (201)
T PF00834_consen 96 ETIKYIKEAGIKAGIALNPETPVEELEPYLDQVDMVLVM 134 (201)
T ss_dssp HHHHHHHHTTSEEEEEE-TTS-GGGGTTTGCCSSEEEEE
T ss_pred HHHHHHHHhCCCEEEEEECCCCchHHHHHhhhcCEEEEE
Confidence 456788888887643 44444445566678899999983
Done!