Query psy12875
Match_columns 308
No_of_seqs 242 out of 2076
Neff 8.0
Searched_HMMs 29240
Date Fri Aug 16 21:59:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12875.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12875hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1l9x_A Gamma-glutamyl hydrolas 100.0 1.4E-35 4.6E-40 274.1 16.7 229 16-307 28-257 (315)
2 3fij_A LIN1909 protein; 11172J 100.0 6.6E-32 2.3E-36 242.3 16.4 208 17-297 3-224 (254)
3 1qdl_B Protein (anthranilate s 99.9 5.4E-26 1.8E-30 195.9 17.5 171 42-301 11-185 (195)
4 2a9v_A GMP synthase; structura 99.9 6.1E-26 2.1E-30 198.2 12.1 165 41-300 22-188 (212)
5 1wl8_A GMP synthase [glutamine 99.9 2.3E-25 8E-30 190.8 15.2 165 43-300 11-175 (189)
6 1i1q_B Anthranilate synthase c 99.9 5.1E-25 1.8E-29 189.3 14.9 168 42-301 10-179 (192)
7 1o1y_A Conserved hypothetical 99.9 5.1E-25 1.7E-29 195.7 12.7 163 48-296 28-190 (239)
8 2vpi_A GMP synthase; guanine m 99.9 2.7E-25 9.1E-30 194.9 9.3 161 47-300 38-198 (218)
9 1gpm_A GMP synthetase, XMP ami 99.9 4.2E-24 1.4E-28 209.8 15.2 185 17-300 6-190 (525)
10 3m3p_A Glutamine amido transfe 99.9 3.2E-24 1.1E-28 191.5 13.1 163 48-296 19-181 (250)
11 4gud_A Imidazole glycerol phos 99.9 1.7E-24 5.7E-29 188.5 10.2 175 47-299 16-192 (211)
12 3uow_A GMP synthetase; structu 99.9 4.9E-24 1.7E-28 210.3 14.3 199 42-301 17-219 (556)
13 3tqi_A GMP synthase [glutamine 99.9 3.6E-24 1.2E-28 210.3 12.4 174 43-301 21-194 (527)
14 2ywb_A GMP synthase [glutamine 99.9 2.7E-24 9.1E-29 210.3 10.8 165 42-300 9-173 (503)
15 1a9x_B Carbamoyl phosphate syn 99.9 9.5E-23 3.3E-27 191.4 17.8 157 47-299 202-360 (379)
16 3l7n_A Putative uncharacterize 99.9 1.5E-23 5.3E-28 185.8 11.5 166 48-295 16-183 (236)
17 2ywd_A Glutamine amidotransfer 99.9 2.7E-23 9.2E-28 178.0 9.2 173 17-296 1-177 (191)
18 2w7t_A CTP synthetase, putativ 99.9 7.4E-23 2.5E-27 185.2 10.0 219 19-299 9-241 (273)
19 2vxo_A GMP synthase [glutamine 99.9 1.5E-22 5.2E-27 203.8 11.3 161 47-300 43-203 (697)
20 3r75_A Anthranilate/para-amino 99.9 4.1E-22 1.4E-26 199.0 12.2 171 39-301 453-623 (645)
21 2ywj_A Glutamine amidotransfer 99.9 5E-22 1.7E-26 169.6 7.8 154 48-296 14-170 (186)
22 2v4u_A CTP synthase 2; pyrimid 99.8 3.9E-21 1.3E-25 175.3 11.1 193 48-299 43-261 (289)
23 3d54_D Phosphoribosylformylgly 99.8 1.6E-20 5.6E-25 163.2 14.4 185 18-299 2-194 (213)
24 1gpw_B Amidotransferase HISH; 99.8 3.8E-21 1.3E-25 166.1 8.9 159 47-295 14-182 (201)
25 1q7r_A Predicted amidotransfer 99.8 2.3E-21 7.9E-26 169.9 7.5 175 16-296 21-197 (219)
26 1ka9_H Imidazole glycerol phos 99.8 7.5E-21 2.5E-25 164.2 9.4 74 47-133 16-91 (200)
27 2nv0_A Glutamine amidotransfer 99.8 1.8E-20 6E-25 161.2 8.5 160 48-297 15-176 (196)
28 2iss_D Glutamine amidotransfer 99.8 3.1E-20 1.1E-24 161.4 8.9 178 14-297 16-196 (208)
29 3nva_A CTP synthase; rossman f 99.8 2E-20 6.9E-25 180.0 8.1 196 41-299 306-519 (535)
30 1vco_A CTP synthetase; tetrame 99.8 2.9E-20 9.8E-25 181.6 8.8 221 17-299 299-530 (550)
31 2abw_A PDX2 protein, glutamina 99.8 3.8E-20 1.3E-24 162.9 7.8 92 17-139 2-101 (227)
32 1jvn_A Glutamine, bifunctional 99.8 6E-20 2E-24 181.3 8.7 194 18-296 4-201 (555)
33 1s1m_A CTP synthase; CTP synth 99.8 7.2E-20 2.5E-24 178.6 5.5 203 47-299 306-523 (545)
34 2vdj_A Homoserine O-succinyltr 99.7 4.7E-16 1.6E-20 141.7 13.0 191 16-297 33-241 (301)
35 2h2w_A Homoserine O-succinyltr 99.6 8.7E-16 3E-20 140.3 11.9 190 16-297 45-252 (312)
36 3ugj_A Phosphoribosylformylgly 99.2 7.4E-11 2.5E-15 125.2 16.0 101 17-133 1046-1152(1303)
37 3l4e_A Uncharacterized peptida 98.7 4.7E-08 1.6E-12 84.3 7.7 102 16-133 25-129 (206)
38 1i1q_B Anthranilate synthase c 98.5 1.1E-07 3.6E-12 80.9 5.2 45 153-197 51-99 (192)
39 1fy2_A Aspartyl dipeptidase; s 98.4 1E-07 3.5E-12 83.5 3.3 98 17-133 30-129 (229)
40 1a9x_B Carbamoyl phosphate syn 98.3 3.2E-07 1.1E-11 85.9 4.8 48 151-198 233-285 (379)
41 1qdl_B Protein (anthranilate s 98.3 4.2E-07 1.5E-11 77.4 4.8 48 151-198 47-101 (195)
42 3l7n_A Putative uncharacterize 98.2 8E-07 2.7E-11 78.0 4.4 48 151-198 47-108 (236)
43 1o1y_A Conserved hypothetical 98.1 2.4E-06 8.3E-11 75.1 4.2 48 151-198 59-117 (239)
44 3r75_A Anthranilate/para-amino 98.0 2.3E-06 7.9E-11 85.5 4.3 48 151-198 488-545 (645)
45 3m3p_A Glutamine amido transfe 98.0 4.7E-06 1.6E-10 73.8 4.3 48 151-198 50-106 (250)
46 1wl8_A GMP synthase [glutamine 98.0 6.1E-06 2.1E-10 69.6 4.8 46 152-198 46-96 (189)
47 1oi4_A Hypothetical protein YH 97.9 3.5E-05 1.2E-09 65.2 8.9 96 19-133 24-134 (193)
48 2w7t_A CTP synthetase, putativ 97.9 4.1E-06 1.4E-10 75.2 2.8 46 151-196 69-118 (273)
49 2a9v_A GMP synthase; structura 97.9 5.9E-06 2E-10 71.2 3.7 48 151-198 56-109 (212)
50 3fij_A LIN1909 protein; 11172J 97.9 9.5E-06 3.3E-10 71.9 5.0 34 165-198 98-132 (254)
51 4gud_A Imidazole glycerol phos 97.8 3.3E-06 1.1E-10 72.5 0.5 45 154-198 44-96 (211)
52 1s1m_A CTP synthase; CTP synth 97.8 8.6E-06 3E-10 79.5 3.4 49 151-199 345-397 (545)
53 1vco_A CTP synthetase; tetrame 97.8 1.1E-05 3.6E-10 79.0 3.6 49 150-198 356-408 (550)
54 2v4u_A CTP synthase 2; pyrimid 97.8 9.6E-06 3.3E-10 73.3 3.1 46 151-196 92-141 (289)
55 3tqi_A GMP synthase [glutamine 97.8 1.4E-05 4.7E-10 78.2 4.1 48 151-198 55-106 (527)
56 2ywj_A Glutamine amidotransfer 97.7 7E-06 2.4E-10 69.0 0.9 44 151-196 39-90 (186)
57 4hcj_A THIJ/PFPI domain protei 97.7 3.8E-05 1.3E-09 64.3 5.5 102 12-133 3-117 (177)
58 3l3b_A ES1 family protein; ssg 97.7 0.00024 8.1E-09 62.5 10.7 111 14-133 19-167 (242)
59 3uow_A GMP synthetase; structu 97.7 2.2E-05 7.4E-10 77.3 4.2 49 151-199 52-108 (556)
60 1gpm_A GMP synthetase, XMP ami 97.7 2.3E-05 8E-10 76.6 4.3 47 152-198 53-103 (525)
61 2vpi_A GMP synthase; guanine m 97.6 2.3E-05 7.7E-10 67.9 2.9 27 172-198 94-120 (218)
62 2ywb_A GMP synthase [glutamine 97.6 3.3E-05 1.1E-09 75.1 4.3 47 152-198 45-95 (503)
63 1vhq_A Enhancing lycopene bios 97.6 0.00035 1.2E-08 60.7 10.3 88 49-139 30-155 (232)
64 2rk3_A Protein DJ-1; parkinson 97.6 0.00024 8.3E-09 60.0 8.7 99 17-133 2-115 (197)
65 1l9x_A Gamma-glutamyl hydrolas 97.6 4.3E-05 1.5E-09 69.8 4.1 24 174-197 124-147 (315)
66 2vxo_A GMP synthase [glutamine 97.5 4.6E-05 1.6E-09 76.8 4.4 47 152-198 75-125 (697)
67 3l18_A Intracellular protease 97.5 0.0004 1.4E-08 57.0 8.4 79 48-133 20-111 (168)
68 2ab0_A YAJL; DJ-1/THIJ superfa 97.4 0.00035 1.2E-08 59.5 7.9 80 48-133 20-116 (205)
69 3ej6_A Catalase-3; heme, hydro 97.4 0.00041 1.4E-08 69.1 8.8 82 48-133 556-646 (688)
70 4e08_A DJ-1 beta; flavodoxin-l 97.4 0.00058 2E-08 57.3 8.6 99 17-133 4-116 (190)
71 3ttv_A Catalase HPII; heme ori 97.4 0.00035 1.2E-08 70.1 8.3 100 16-135 598-710 (753)
72 1gpw_B Amidotransferase HISH; 97.4 3.2E-05 1.1E-09 65.7 0.7 40 152-192 45-95 (201)
73 3nva_A CTP synthase; rossman f 97.4 7.2E-05 2.5E-09 72.3 3.1 47 151-197 352-402 (535)
74 2vrn_A Protease I, DR1199; cys 97.3 0.00033 1.1E-08 58.7 6.0 99 17-133 8-124 (190)
75 3ot1_A 4-methyl-5(B-hydroxyeth 97.1 0.00074 2.5E-08 57.7 6.6 103 13-133 4-121 (208)
76 1ka9_H Imidazole glycerol phos 97.0 0.00018 6.1E-09 61.1 1.3 118 152-296 43-183 (200)
77 2ywd_A Glutamine amidotransfer 97.0 0.00014 4.7E-09 61.1 0.5 29 167-195 65-96 (191)
78 3efe_A THIJ/PFPI family protei 97.0 0.0027 9.3E-08 54.3 8.7 96 18-133 5-121 (212)
79 1q7r_A Predicted amidotransfer 97.0 0.00015 5E-09 62.7 0.4 45 152-196 63-116 (219)
80 3uk7_A Class I glutamine amido 96.9 0.0013 4.3E-08 61.8 6.6 101 14-133 201-330 (396)
81 3n7t_A Macrophage binding prot 96.9 0.0011 3.8E-08 58.3 5.8 51 77-133 104-154 (247)
82 3f5d_A Protein YDEA; unknow pr 96.9 0.0028 9.7E-08 54.0 8.0 94 19-133 4-109 (206)
83 3cne_A Putative protease I; st 96.9 0.0011 3.8E-08 54.7 5.1 51 77-133 65-120 (175)
84 2nv0_A Glutamine amidotransfer 96.8 0.00025 8.7E-09 59.8 1.1 29 167-195 64-93 (196)
85 3kkl_A Probable chaperone prot 96.8 0.00088 3E-08 58.8 4.4 51 77-133 97-147 (244)
86 2iss_D Glutamine amidotransfer 96.8 0.00024 8.3E-09 60.7 0.6 29 167-195 83-112 (208)
87 2abw_A PDX2 protein, glutamina 96.8 0.00021 7.3E-09 61.8 0.1 114 167-297 71-202 (227)
88 3uk7_A Class I glutamine amido 96.6 0.0029 9.8E-08 59.3 6.6 97 18-133 12-137 (396)
89 3en0_A Cyanophycinase; serine 96.6 0.0025 8.6E-08 57.4 5.8 98 18-132 56-160 (291)
90 2iuf_A Catalase; oxidoreductas 96.5 0.0018 6.2E-08 64.6 4.9 84 48-133 549-648 (688)
91 1n57_A Chaperone HSP31, protei 96.3 0.0054 1.8E-07 55.2 6.3 79 49-133 81-194 (291)
92 1sy7_A Catalase 1; heme oxidat 96.2 0.0095 3.3E-07 59.9 7.9 98 18-133 534-644 (715)
93 1u9c_A APC35852; structural ge 96.2 0.0039 1.3E-07 53.5 4.3 80 48-133 33-138 (224)
94 2fex_A Conserved hypothetical 96.2 0.0016 5.3E-08 54.5 1.6 77 49-133 20-110 (188)
95 3er6_A Putative transcriptiona 96.1 0.017 5.9E-07 49.1 7.9 51 76-133 72-124 (209)
96 3ewn_A THIJ/PFPI family protei 96.1 0.0097 3.3E-07 52.4 6.4 96 19-133 24-133 (253)
97 1jvn_A Glutamine, bifunctional 96.0 0.0011 3.9E-08 65.0 0.1 39 152-191 47-96 (555)
98 4gdh_A DJ-1, uncharacterized p 95.9 0.007 2.4E-07 51.0 4.7 79 49-132 23-122 (194)
99 3gra_A Transcriptional regulat 95.8 0.0066 2.3E-07 51.5 4.1 49 76-133 69-117 (202)
100 1rw7_A YDR533CP; alpha-beta sa 95.8 0.0036 1.2E-07 54.7 2.4 51 77-133 97-147 (243)
101 3d54_D Phosphoribosylformylgly 95.5 0.0046 1.6E-07 52.5 1.9 34 165-198 69-105 (213)
102 2vdj_A Homoserine O-succinyltr 95.2 0.0053 1.8E-07 55.5 1.4 23 172-194 133-155 (301)
103 3noq_A THIJ/PFPI family protei 95.2 0.018 6.1E-07 49.9 4.5 97 17-133 4-113 (231)
104 2h2w_A Homoserine O-succinyltr 95.1 0.0058 2E-07 55.5 1.4 23 172-194 145-167 (312)
105 3mgk_A Intracellular protease/ 95.1 0.011 3.7E-07 50.5 2.9 50 77-133 64-113 (211)
106 3fse_A Two-domain protein cont 94.5 0.02 6.8E-07 53.2 3.2 96 19-133 11-121 (365)
107 3bhn_A THIJ/PFPI domain protei 88.5 0.12 4.2E-06 44.8 1.0 51 76-133 78-128 (236)
108 3pzy_A MOG; ssgcid, seattle st 86.7 0.88 3E-05 37.0 5.1 70 15-93 4-80 (164)
109 2pjk_A 178AA long hypothetical 86.4 4.2 0.00014 33.3 9.2 72 17-93 14-95 (178)
110 1fy2_A Aspartyl dipeptidase; s 84.9 0.34 1.1E-05 41.7 1.8 19 172-190 111-129 (229)
111 3l4e_A Uncharacterized peptida 83.6 0.37 1.3E-05 40.8 1.4 18 172-189 111-128 (206)
112 3ugj_A Phosphoribosylformylgly 83.3 0.35 1.2E-05 51.8 1.4 28 274-301 1251-1278(1303)
113 3rfq_A Pterin-4-alpha-carbinol 78.7 4.5 0.00015 33.5 6.4 69 17-93 29-103 (185)
114 1jlj_A Gephyrin; globular alph 76.0 14 0.00048 30.4 8.8 75 12-93 8-92 (189)
115 3h75_A Periplasmic sugar-bindi 76.0 12 0.00039 33.2 9.0 87 17-126 2-95 (350)
116 1y5e_A Molybdenum cofactor bio 73.8 11 0.00039 30.2 7.6 65 17-89 12-83 (169)
117 1di6_A MOGA, molybdenum cofact 73.3 4.5 0.00015 33.7 5.1 71 16-93 1-80 (195)
118 1mkz_A Molybdenum cofactor bio 70.5 12 0.00041 30.2 7.0 65 17-89 9-80 (172)
119 1oi4_A Hypothetical protein YH 70.2 2.7 9.2E-05 34.6 3.0 26 165-190 108-134 (193)
120 3tb6_A Arabinose metabolism tr 69.7 45 0.0016 28.1 11.1 63 17-88 14-81 (298)
121 3kbq_A Protein TA0487; structu 69.6 5.6 0.00019 32.5 4.7 67 17-89 2-73 (172)
122 3l6u_A ABC-type sugar transpor 67.7 28 0.00096 29.5 9.3 63 16-87 6-73 (293)
123 3l49_A ABC sugar (ribose) tran 66.8 43 0.0015 28.2 10.3 62 17-87 4-70 (291)
124 2g2c_A Putative molybdenum cof 65.7 3.8 0.00013 33.1 2.9 68 16-89 3-80 (167)
125 3m9w_A D-xylose-binding peripl 64.1 41 0.0014 28.8 9.7 62 18-88 2-68 (313)
126 1g8l_A Molybdopterin biosynthe 64.0 12 0.00041 34.9 6.4 82 11-93 170-257 (411)
127 2pbq_A Molybdenum cofactor bio 63.7 10 0.00035 30.9 5.2 67 17-89 4-79 (178)
128 1t0b_A THUA-like protein; treh 62.1 16 0.00054 31.5 6.4 73 45-126 33-106 (252)
129 1ehs_A STB, heat-stable entero 59.8 1.9 6.3E-05 26.1 -0.0 15 178-192 33-47 (48)
130 3uug_A Multiple sugar-binding 59.8 43 0.0015 28.9 9.1 62 17-87 2-68 (330)
131 2fn9_A Ribose ABC transporter, 58.8 56 0.0019 27.5 9.5 62 17-87 1-67 (290)
132 2fts_A Gephyrin; gephyrin, neu 58.6 11 0.00038 35.1 5.1 79 11-89 174-258 (419)
133 1uz5_A MOEA protein, 402AA lon 57.4 15 0.0005 34.2 5.6 78 12-89 174-257 (402)
134 2an1_A Putative kinase; struct 53.4 22 0.00075 31.0 5.9 83 19-126 6-96 (292)
135 3jy6_A Transcriptional regulat 53.3 65 0.0022 26.9 8.9 63 17-88 6-73 (276)
136 3rot_A ABC sugar transporter, 52.9 61 0.0021 27.5 8.8 62 17-87 2-70 (297)
137 2x7x_A Sensor protein; transfe 50.8 93 0.0032 26.8 9.8 61 17-87 5-71 (325)
138 3k4h_A Putative transcriptiona 50.4 84 0.0029 26.3 9.2 67 17-87 7-78 (292)
139 1wu2_A MOEA protein, molybdopt 50.0 15 0.00052 34.0 4.5 78 11-89 175-261 (396)
140 2is8_A Molybdopterin biosynthe 49.2 13 0.00044 29.7 3.4 42 48-89 25-73 (164)
141 3ksm_A ABC-type sugar transpor 49.0 55 0.0019 27.2 7.7 60 19-87 1-68 (276)
142 2dri_A D-ribose-binding protei 47.8 65 0.0022 26.9 8.0 61 18-87 1-66 (271)
143 2gk3_A Putative cytoplasmic pr 47.1 42 0.0014 28.8 6.6 75 47-123 43-124 (256)
144 3l18_A Intracellular protease 46.9 11 0.00039 29.7 2.7 26 165-190 85-111 (168)
145 3o74_A Fructose transport syst 45.4 1.1E+02 0.0039 25.0 9.2 61 19-88 3-68 (272)
146 1uuy_A CNX1, molybdopterin bio 45.2 38 0.0013 27.0 5.7 67 17-89 4-82 (167)
147 1u0t_A Inorganic polyphosphate 44.4 60 0.0021 28.5 7.4 82 20-126 6-108 (307)
148 3cs3_A Sugar-binding transcrip 44.2 64 0.0022 27.0 7.4 60 17-87 7-66 (277)
149 2ioy_A Periplasmic sugar-bindi 43.2 1.2E+02 0.0042 25.2 9.2 43 45-87 19-66 (283)
150 1z0s_A Probable inorganic poly 42.1 22 0.00077 31.2 4.1 59 46-126 42-100 (278)
151 3gv0_A Transcriptional regulat 40.7 99 0.0034 26.0 8.1 65 16-87 6-75 (288)
152 2rjo_A Twin-arginine transloca 39.1 1.1E+02 0.0038 26.3 8.4 61 18-87 5-72 (332)
153 8abp_A L-arabinose-binding pro 38.8 80 0.0027 26.7 7.2 60 18-87 2-66 (306)
154 3h5o_A Transcriptional regulat 38.6 1.9E+02 0.0065 24.9 10.9 61 18-87 62-127 (339)
155 1vhq_A Enhancing lycopene bios 37.0 16 0.00056 30.7 2.3 29 164-192 122-151 (232)
156 2vrn_A Protease I, DR1199; cys 36.8 16 0.00056 29.4 2.2 27 164-190 97-124 (190)
157 2fex_A Conserved hypothetical 36.7 29 0.00099 27.9 3.7 29 162-190 81-110 (188)
158 2r47_A Uncharacterized protein 36.6 10 0.00035 30.4 0.8 52 77-137 83-134 (157)
159 3rpe_A MDAB, modulator of drug 36.3 57 0.0019 27.4 5.6 65 16-85 24-90 (218)
160 4e5v_A Putative THUA-like prot 36.3 74 0.0025 27.7 6.6 72 45-127 21-96 (281)
161 1eiw_A Hypothetical protein MT 35.1 30 0.001 25.9 3.2 56 47-123 18-73 (111)
162 3g1w_A Sugar ABC transporter; 34.8 1.2E+02 0.0042 25.5 7.8 61 18-87 4-70 (305)
163 2fvy_A D-galactose-binding per 34.5 1.7E+02 0.0057 24.5 8.6 60 19-87 3-68 (309)
164 3kjx_A Transcriptional regulat 34.2 2.1E+02 0.0073 24.6 9.5 61 18-87 68-133 (344)
165 3e3m_A Transcriptional regulat 33.1 1.8E+02 0.0061 25.3 8.8 61 18-87 70-135 (355)
166 3iwt_A 178AA long hypothetical 33.1 93 0.0032 24.7 6.3 71 17-89 14-92 (178)
167 3cne_A Putative protease I; st 32.6 22 0.00076 28.2 2.3 26 165-190 94-120 (175)
168 3miz_A Putative transcriptiona 32.4 1.2E+02 0.0042 25.5 7.4 63 17-87 12-79 (301)
169 3hcw_A Maltose operon transcri 31.9 1.5E+02 0.005 25.0 7.8 67 17-87 6-77 (295)
170 3huu_A Transcription regulator 31.5 1.3E+02 0.0043 25.5 7.3 66 17-87 21-92 (305)
171 2amj_A Modulator of drug activ 30.7 70 0.0024 26.2 5.2 63 18-85 13-77 (204)
172 2vk2_A YTFQ, ABC transporter p 30.7 2.3E+02 0.008 23.8 8.9 60 19-87 3-67 (306)
173 3o1i_D Periplasmic protein TOR 30.6 2.1E+02 0.007 23.9 8.5 63 17-88 4-73 (304)
174 3egc_A Putative ribose operon 30.3 1.4E+02 0.0049 24.9 7.4 64 16-88 6-74 (291)
175 3fni_A Putative diflavin flavo 29.9 1.3E+02 0.0043 23.4 6.4 43 43-85 19-63 (159)
176 2rk3_A Protein DJ-1; parkinson 29.8 24 0.00081 28.7 2.1 26 165-190 89-115 (197)
177 1gud_A ALBP, D-allose-binding 29.7 1.9E+02 0.0064 24.2 8.1 43 45-87 19-68 (288)
178 2rgy_A Transcriptional regulat 29.4 2E+02 0.0069 24.0 8.2 62 17-87 7-76 (290)
179 2fep_A Catabolite control prot 29.3 2.5E+02 0.0085 23.4 9.7 61 18-87 16-81 (289)
180 2qv7_A Diacylglycerol kinase D 29.1 2.9E+02 0.01 24.1 10.2 88 19-127 25-116 (337)
181 2ioj_A Hypothetical protein AF 28.9 1.2E+02 0.0042 22.9 6.1 69 48-132 43-113 (139)
182 2q62_A ARSH; alpha/beta, flavo 28.8 66 0.0023 27.4 4.8 77 19-108 36-124 (247)
183 3pfn_A NAD kinase; structural 28.8 37 0.0013 31.0 3.4 69 44-127 54-142 (365)
184 2kyr_A Fructose-like phosphotr 28.1 64 0.0022 24.2 4.0 59 16-88 4-70 (111)
185 3dbi_A Sugar-binding transcrip 27.7 2.9E+02 0.0098 23.6 9.8 62 17-87 60-128 (338)
186 3dzv_A 4-methyl-5-(beta-hydrox 27.4 2.4E+02 0.0082 24.3 8.3 35 50-87 33-68 (273)
187 3f2v_A General stress protein 27.0 90 0.0031 25.4 5.2 56 19-85 3-65 (192)
188 3brq_A HTH-type transcriptiona 26.4 2.7E+02 0.0093 22.9 8.8 62 17-87 18-86 (296)
189 3rht_A (gatase1)-like protein; 26.3 62 0.0021 28.0 4.2 61 47-116 20-80 (259)
190 2o20_A Catabolite control prot 26.2 2.9E+02 0.0098 23.6 8.8 61 18-87 63-128 (332)
191 2zuv_A Lacto-N-biose phosphory 25.5 98 0.0034 30.8 5.7 97 17-124 437-543 (759)
192 1tjy_A Sugar transport protein 24.2 3.2E+02 0.011 23.1 8.7 61 18-87 3-69 (316)
193 3brs_A Periplasmic binding pro 23.9 1.6E+02 0.0054 24.5 6.4 61 18-87 5-74 (289)
194 3d8u_A PURR transcriptional re 23.6 1.6E+02 0.0054 24.2 6.4 61 18-87 3-68 (275)
195 3qk7_A Transcriptional regulat 23.4 3.2E+02 0.011 22.7 10.0 67 17-88 5-75 (294)
196 3kke_A LACI family transcripti 23.4 1.7E+02 0.0058 24.7 6.6 63 17-88 14-81 (303)
197 2i2c_A Probable inorganic poly 23.4 1E+02 0.0035 26.4 5.2 55 46-127 17-71 (272)
198 1sqs_A Conserved hypothetical 23.3 1E+02 0.0036 25.6 5.1 44 43-86 18-87 (242)
199 1ydg_A Trp repressor binding p 23.0 73 0.0025 25.8 3.9 43 43-85 21-85 (211)
200 3bil_A Probable LACI-family tr 22.9 2.5E+02 0.0085 24.3 7.8 43 45-87 84-131 (348)
201 3c3k_A Alanine racemase; struc 22.8 2.6E+02 0.0088 23.2 7.6 62 17-87 7-73 (285)
202 2vzf_A NADH-dependent FMN redu 22.3 78 0.0027 25.4 3.9 44 43-86 19-77 (197)
203 3clk_A Transcription regulator 22.3 2.4E+02 0.0084 23.3 7.4 62 17-87 7-74 (290)
204 3hs3_A Ribose operon repressor 21.8 2E+02 0.0068 23.9 6.6 62 16-86 8-75 (277)
205 1byk_A Protein (trehalose oper 21.5 1.8E+02 0.006 23.7 6.2 61 18-87 2-67 (255)
206 2fz5_A Flavodoxin; alpha/beta 21.3 2.4E+02 0.0081 20.4 6.4 42 43-87 14-55 (137)
207 2a5l_A Trp repressor binding p 20.8 89 0.0031 24.8 4.0 43 43-85 20-78 (200)
208 3lkv_A Uncharacterized conserv 20.8 3.9E+02 0.013 22.7 8.6 41 47-87 159-202 (302)
209 3d02_A Putative LACI-type tran 20.7 3.6E+02 0.012 22.3 9.3 61 18-87 4-70 (303)
210 3f5d_A Protein YDEA; unknow pr 20.6 57 0.002 26.8 2.7 27 164-190 82-109 (206)
211 3l3b_A ES1 family protein; ssg 20.4 60 0.0021 27.6 2.9 28 164-191 140-168 (242)
212 3gbv_A Putative LACI-family tr 20.1 1.9E+02 0.0066 24.0 6.3 63 16-87 6-78 (304)
213 3g85_A Transcriptional regulat 20.0 1.7E+02 0.0058 24.3 5.8 64 16-87 9-77 (289)
214 3e61_A Putative transcriptiona 20.0 1.4E+02 0.0049 24.6 5.3 61 17-86 7-72 (277)
215 3hpd_A Hydroxyethylthiazole ki 20.0 1.5E+02 0.005 25.7 5.3 59 50-121 31-90 (265)
No 1
>1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1
Probab=100.00 E-value=1.4e-35 Score=274.05 Aligned_cols=229 Identities=32% Similarity=0.581 Sum_probs=169.5
Q ss_pred CCCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCC
Q psy12875 16 TDTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPN 95 (308)
Q Consensus 16 ~~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~ 95 (308)
+.||+|||++...... .......+|+.++|+++|+++|+.+++++.+.+.+.++..++++||||||||+.++++.
T Consensus 28 ~~~P~IGI~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~G~~~~vv~~~~~~~~i~~~l~~~dglil~GG~~~v~p~- 102 (315)
T 1l9x_A 28 AKKPIIGILMQKCRNK----VMKNYGRYYIAASYVKYLESAGARVVPVRLDLTEKDYEILFKSINGILFPGGSVDLRRS- 102 (315)
T ss_dssp CCCCEEEEECEECCSH----HHHTTCSEEEEHHHHHHHHHTTCEEEEECSSCCHHHHHHHHHHSSEEEECCCCCCTTTC-
T ss_pred CCCCEEEEECCccccc----ccccCcceehHHHHHHHHHHCCCEEEEEecCCCHHHHHHHHhcCCEEEEeCCCcccChh-
Confidence 4589999999865420 01111356888999999999999999999877666666667889999999998777763
Q ss_pred chhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCC
Q psy12875 96 GYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTF 175 (308)
Q Consensus 96 ~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~ 175 (308)
.|.+..+.+++.++++.++++++||||||+|||+|+.+ +||+........ .+. ..
T Consensus 103 ~~~~~~~~l~~~~~~~~~~g~~~PiLGIC~G~Qll~~a-~GG~~~~~~~~~------~g~------------------~~ 157 (315)
T 1l9x_A 103 DYAKVAKIFYNLSIQSFDDGDYFPVWGTCLGFEELSLL-ISGECLLTATDT------VDV------------------AM 157 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCEEEETHHHHHHHHH-HHSSCCCEEEEE------EEE------------------EE
T ss_pred hhhHHHHHHHHHHHHHHhcCCCceEEEEChHHHHHHHH-hCCccccccccc------cCC------------------CC
Confidence 57666667788888877654359999999999999999 899753211100 000 00
Q ss_pred CeeeeehhHHHHHHHhCCcccccCCcccceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeecccccc
Q psy12875 176 PVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKY 255 (308)
Q Consensus 176 PilGiClG~Qll~~~~G~~v~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~ 255 (308)
.+ +. ....++++||+.++..+...+++...++++|+++|+++++...
T Consensus 158 ------------------p~-------------~~--~~~~~~s~L~~~~~~~~~~~l~~~~~~~~~H~~~V~~~~~~~~ 204 (315)
T 1l9x_A 158 ------------------PL-------------NF--TGGQLHSRMFQNFPTELLLSLAVEPLTANFHKWSLSVKNFTMN 204 (315)
T ss_dssp ------------------CC-------------EE--CSTTTTCSTTTTSCHHHHHHHHHSCCEEEEEEEECBHHHHHTC
T ss_pred ------------------Ce-------------ee--ccCCCCChHHHhcChhhhhhccccceEEEhhhhhcCccccccc
Confidence 00 00 0112477899999988776666666777899999986554432
Q ss_pred -CCCCCeEEEEEecCCCceEEEEEEecCCCEEEEeecCCccCcccCCCCCCCC
Q psy12875 256 -GLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNAYEWTESQHNPH 307 (308)
Q Consensus 256 -~l~~~~~via~s~~~~~~~v~ai~~~~~p~~GvQFHPE~~~~~~~~~~~~~~ 307 (308)
.+|++++++|+++|+..|++++++++++++||||||||+..++|+....+||
T Consensus 205 ~~l~~g~~v~A~s~dg~ve~i~~i~~~~~~i~GVQfHPE~~~~e~~~~~~~p~ 257 (315)
T 1l9x_A 205 EKLKKFFNVLTTNTDGKIEFISTMEGYKYPVYGVQWHPEKAPYEWKNLDGISH 257 (315)
T ss_dssp HHHHHHEEEEEEEESSSCEEEEEEEESSSCEEEESSCTTHHHHCCSSCTTCCC
T ss_pred cccCCCCEEEEEcCCCCEEEEEEeccCCCCEEEEEeCCCCCcccccccccCCc
Confidence 2788999999999988888899999888999999999999999997444566
No 2
>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua}
Probab=99.98 E-value=6.6e-32 Score=242.32 Aligned_cols=208 Identities=21% Similarity=0.340 Sum_probs=137.1
Q ss_pred CCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCc
Q psy12875 17 DTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNG 96 (308)
Q Consensus 17 ~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~ 96 (308)
|||+|||+++...... ....+...+|+.++|+++|+++|+.++++|+..+.+ ++..++.+||||+|||+ +++|. .
T Consensus 3 ~~p~IGi~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~aG~~pv~lp~~~~~~-~~~~l~~~DGlil~GG~-~v~P~-~ 77 (254)
T 3fij_A 3 LKPVIGITGNRLVKGV--DVFYGHRVTYTQQRYVDAIQKVGGFPIALPIDDPST-AVQAISLVDGLLLTGGQ-DITPQ-L 77 (254)
T ss_dssp CCCEEEEEC--------------------CHHHHHHHHHHTCEEEEECCCCGGG-HHHHHHTCSEEEECCCS-CCCGG-G
T ss_pred CCCEEEEeCCcccccc--cccCCcchhhhhHHHHHHHHHCCCEEEEEeCCCchH-HHHHHhhCCEEEECCCC-CCChh-h
Confidence 7899999998643310 011223467889999999999999999999876655 77778899999999998 66663 2
Q ss_pred hhH----------HHH--HHHHHHHHHHHcCCCccEEEechhhhHHHHHhcCCccccccccccccccceeeecCCCCcch
Q psy12875 97 YAD----------AGR--QILHLVDKINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSL 164 (308)
Q Consensus 97 ~~~----------~~~--~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~ 164 (308)
|.+ ..+ ..+++++++.+. ++||||||+|||+|+.+ +||++.++...... ..+.+...
T Consensus 78 yg~~~~~~~~~~~~~rd~~~~~lir~a~~~--~~PiLGIC~G~Qll~~a-~Gg~v~~~~~~~~~--~~~~h~~~------ 146 (254)
T 3fij_A 78 YLEEPSQEIGAYFPPRDSYEIALVRAALDA--GKPIFAICRGMQLVNVA-LGGTLYQDISQVET--KALQHLQR------ 146 (254)
T ss_dssp GTCCCCTTCCCCCHHHHHHHHHHHHHHHHT--TCCEEEETHHHHHHHHH-TTCCEESSGGGSSS--CCCCCBCC------
T ss_pred cCCccCcccCCcChhhhHHHHHHHHHHHHc--CCCEEEECHHHHHHHHH-hCCceecccccccC--ccccccCC------
Confidence 322 223 345667888874 49999999999999999 99998644210000 00111000
Q ss_pred hhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCcccceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccc
Q psy12875 165 FSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHI 244 (308)
Q Consensus 165 ~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~ 244 (308)
+.+-+| ...+.. .+++++++.++..+. ++++|+
T Consensus 147 ---------~~~~~g-----------------------~~~v~~-------~~~s~l~~~~~~~~~--------v~~~H~ 179 (254)
T 3fij_A 147 ---------VDEQLG-----------------------SHTIDI-------EPTSELAKHHPNKKL--------VNSLHH 179 (254)
T ss_dssp ---------SCTTSC-----------------------CEEEEE-------CTTSSGGGTCCTTEE--------ECCBCS
T ss_pred ---------CCCccc-----------------------eEEEEe-------CCCChHHHhcCCcEE--------EEEecc
Confidence 000011 111111 246778887766443 488999
Q ss_pred eeeeeccccccCCCCCeEEEEEecCCCceEEEEEEec-CCC-EEEEeecCCccCc
Q psy12875 245 WCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHK-EYP-IVGIQFHPEKNAY 297 (308)
Q Consensus 245 ~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~-~~p-~~GvQFHPE~~~~ 297 (308)
+.|.. +|++++++|+++++. ++|++++ ++| ++|+|||||++.+
T Consensus 180 ~~v~~-------l~~g~~v~a~s~dg~---ieai~~~~~~~~~~gvQfHPE~~~~ 224 (254)
T 3fij_A 180 QFIKK-------LAPSFKVTARTADGM---IEAVEGDNLPSWYLGVQWHPELMFQ 224 (254)
T ss_dssp CEESS-------CCSSEEEEEEETTCC---EEEEEESSCSSCEEEESSCGGGTGG
T ss_pred chhhc-------cCCCcEEEEEeCCCc---EEEEEecCCCCeEEEEEcCCccCCC
Confidence 99863 899999999998875 7899999 887 8999999999875
No 3
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1
Probab=99.94 E-value=5.4e-26 Score=195.94 Aligned_cols=171 Identities=19% Similarity=0.292 Sum_probs=117.6
Q ss_pred ccchHHHHHHHHHHcCCeEEEEEcCC-ChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccE
Q psy12875 42 TSYIAASYVKNIEAAGARVVPILIGQ-DREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPV 120 (308)
Q Consensus 42 ~~~i~~~~~~~l~~aG~~~~~i~~~~-~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~Pv 120 (308)
++| ...+.++|+++|+++.+++.+. +.+++.. .++||||++||+.+... . +......++++++ + .++|+
T Consensus 11 ~s~-~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~--~~~dglil~gG~~~~~~---~-~~~~~~~~~i~~~-~--~~~Pv 80 (195)
T 1qdl_B 11 DSF-VYNIAQIVGELGSYPIVIRNDEISIKGIER--IDPDRLIISPGPGTPEK---R-EDIGVSLDVIKYL-G--KRTPI 80 (195)
T ss_dssp CSS-HHHHHHHHHHTTCEEEEEETTTSCHHHHHH--HCCSEEEECCCSSCTTS---H-HHHTTHHHHHHHH-T--TTSCE
T ss_pred Cch-HHHHHHHHHhCCCEEEEEeCCCCCHHHHhh--CCCCEEEECCCCCChhh---h-hhhhHHHHHHHHh-c--CCCcE
Confidence 345 3578899999999999999753 2222222 16999999888633222 1 1011234556653 4 35999
Q ss_pred EEechhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCC
Q psy12875 121 LGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKS 200 (308)
Q Consensus 121 lGIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~ 200 (308)
||||+|||+|+.+ +||++.+... .. +
T Consensus 81 LGIC~G~QlL~~~-~gg~v~~~~~--------~~---------------------------------------------~ 106 (195)
T 1qdl_B 81 LGVCLGHQAIGYA-FGAKIRRARK--------VF---------------------------------------------H 106 (195)
T ss_dssp EEETHHHHHHHHH-TTCEEEEEEE--------EE---------------------------------------------E
T ss_pred EEEehHHHHHHHH-hCCEEeccCC--------Cc---------------------------------------------C
Confidence 9999999999999 9998743210 00 0
Q ss_pred cccceeeecccccCCCCCC--cCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEe-cCCCceEEEE
Q psy12875 201 CKVQQVNLNLKFLPGAKRS--SLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLS-KYKSWEFVST 277 (308)
Q Consensus 201 g~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s-~~~~~~~v~a 277 (308)
|....+.+ ..++ ++|++++..+. ++++|++++.. +|++++++|++ +++. ++|
T Consensus 107 g~~~~v~~-------~~~~~~~l~~~~~~~~~--------v~~~H~~~v~~-------l~~~~~vla~s~~~g~---i~a 161 (195)
T 1qdl_B 107 GKISNIIL-------VNNSPLSLYYGIAKEFK--------ATRYHSLVVDE-------VHRPLIVDAISAEDNE---IMA 161 (195)
T ss_dssp EEEEEEEE-------CCSSCCSTTTTCCSEEE--------EEEEEEEEEEC-------CCTTEEEEEEESSSCC---EEE
T ss_pred CCceEEEE-------CCCCHhHHHhcCCCceE--------Eeccccchhhh-------CCCCcEEEEEECCCCc---EEE
Confidence 11111111 1244 78888876554 49999999963 88999999999 7875 789
Q ss_pred EEecCCCEEEEeecCCccCcccCC
Q psy12875 278 VEHKEYPIVGIQFHPEKNAYEWTE 301 (308)
Q Consensus 278 i~~~~~p~~GvQFHPE~~~~~~~~ 301 (308)
+++++++++|+|||||++.+++|.
T Consensus 162 ~~~~~~~~~gvQfHPE~~~~~~g~ 185 (195)
T 1qdl_B 162 IHHEEYPIYGVQFHPESVGTSLGY 185 (195)
T ss_dssp EEESSSSEEEESSBTTSTTCTTHH
T ss_pred EEeCCCCEEEEecCCCCCCCccHH
Confidence 999988899999999999877653
No 4
>2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1
Probab=99.93 E-value=6.1e-26 Score=198.19 Aligned_cols=165 Identities=20% Similarity=0.313 Sum_probs=116.3
Q ss_pred CccchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCC-CCCCCCCCchhH-HHHHHHHHHHHHHHcCCCc
Q psy12875 41 YTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGG-GTGFDHPNGYAD-AGRQILHLVDKINEEGVTF 118 (308)
Q Consensus 41 ~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG-~~~~~~~~~~~~-~~~~~~e~~~~~~~~g~~~ 118 (308)
+++| ..+|+++|+++|+.+++++++.+.+ .+.++||||+||| +.+. |.. ....+.+.+ .+ .++
T Consensus 22 ~~~~-~~~~~~~l~~~G~~~~vv~~~~~~~----~l~~~DglIl~GG~p~~~-----~~~~~~~~l~~~~---~~--~~~ 86 (212)
T 2a9v_A 22 GGQW-THREWRVLRELGVDTKIVPNDIDSS----ELDGLDGLVLSGGAPNID-----EELDKLGSVGKYI---DD--HNY 86 (212)
T ss_dssp SCCT-TCHHHHHHHHTTCBCCEEETTSCGG----GGTTCSEEEEEEECSCGG-----GTGGGHHHHHHHH---HH--CCS
T ss_pred CCcc-HHHHHHHHHHCCCEEEEEeCCCCHH----HHhCCCEEEECCCCCCCC-----cccccchhHHHHH---Hh--CCC
Confidence 3456 3478999999999999999765333 4566999999999 4332 222 112333333 34 359
Q ss_pred cEEEechhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875 119 PVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFR 198 (308)
Q Consensus 119 PvlGIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~ 198 (308)
|+||||+|||+|+.+ +||++.+... |.+|+. .+..
T Consensus 87 PiLGIC~G~Qll~~~-lGg~v~~~~~-------------------------------~~~G~~------------~v~~- 121 (212)
T 2a9v_A 87 PILGICVGAQFIALH-FGASVVKAKH-------------------------------PEFGKT------------KVSV- 121 (212)
T ss_dssp CEEEETHHHHHHHHH-TTCEEEEEEE-------------------------------EEEEEE------------EEEE-
T ss_pred CEEEEChHHHHHHHH-hCCEEEcCCC-------------------------------cccCce------------eeEE-
Confidence 999999999999999 9998743210 112221 1111
Q ss_pred CCcccceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEE
Q psy12875 199 KSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTV 278 (308)
Q Consensus 199 ~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai 278 (308)
.++++++++++..+. ++++|++.+.. +|++++++|+++++. ++|+
T Consensus 122 -----------------~~~~~l~~~~~~~~~--------v~~~H~~~v~~-------l~~~~~vlA~s~d~~---i~ai 166 (212)
T 2a9v_A 122 -----------------MHSENIFGGLPSEIT--------VWENHNDEIIN-------LPDDFTLAASSATCQ---VQGF 166 (212)
T ss_dssp -----------------SCCCGGGTTCCSEEE--------EEEEEEEEEES-------CCTTEEEEEECSSCS---CSEE
T ss_pred -----------------CCCChhHhcCCCceE--------EEeEhhhhHhh-------CCCCcEEEEEeCCCC---EEEE
Confidence 135678887765443 48999999863 889999999998876 6699
Q ss_pred EecCCCEEEEeecCCccCcccC
Q psy12875 279 EHKEYPIVGIQFHPEKNAYEWT 300 (308)
Q Consensus 279 ~~~~~p~~GvQFHPE~~~~~~~ 300 (308)
++++.+++|+|||||++.++.+
T Consensus 167 ~~~~~~i~gvQfHPE~~~~~~g 188 (212)
T 2a9v_A 167 YHKTRPIYATQFHPEVEHTQYG 188 (212)
T ss_dssp EESSSSEEEESSCTTSTTSTTH
T ss_pred EECCCCEEEEEeCCCCCCCccH
Confidence 9987889999999999976543
No 5
>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A
Probab=99.93 E-value=2.3e-25 Score=190.84 Aligned_cols=165 Identities=21% Similarity=0.387 Sum_probs=114.2
Q ss_pred cchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEE
Q psy12875 43 SYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLG 122 (308)
Q Consensus 43 ~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlG 122 (308)
+| ..++.++|+++|+.+++++...+.+++.. .++||||+|||+ +.. .+. ...++++++.+. ++|+||
T Consensus 11 ~~-~~~~~~~l~~~G~~~~~~~~~~~~~~~~~--~~~dglil~Gg~-~~~---~~~----~~~~~i~~~~~~--~~PilG 77 (189)
T 1wl8_A 11 QY-VHRIWRTLRYLGVETKIIPNTTPLEEIKA--MNPKGIIFSGGP-SLE---NTG----NCEKVLEHYDEF--NVPILG 77 (189)
T ss_dssp TT-HHHHHHHHHHTTCEEEEEETTCCHHHHHH--TCCSEEEECCCS-CTT---CCT----THHHHHHTGGGT--CSCEEE
T ss_pred ch-HHHHHHHHHHCCCeEEEEECCCChHHhcc--cCCCEEEECCCC-Chh---hhh----hHHHHHHHHhhC--CCeEEE
Confidence 44 35889999999999999997654333322 469999999996 322 111 234555655453 499999
Q ss_pred echhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCcc
Q psy12875 123 VCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCK 202 (308)
Q Consensus 123 IC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~ 202 (308)
||+|||+|+.+ +||++.+... +..|+. .+.
T Consensus 78 IC~G~Q~l~~~-~gg~v~~~~~-------------------------------~~~G~~------------~~~------ 107 (189)
T 1wl8_A 78 ICLGHQLIAKF-FGGKVGRGEK-------------------------------AEYSLV------------EIE------ 107 (189)
T ss_dssp ETHHHHHHHHH-HTCEEEECSC-------------------------------CSCEEE------------EEE------
T ss_pred EcHHHHHHHHH-hCCceecCCC-------------------------------cccCce------------eEE------
Confidence 99999999999 9998743110 001110 110
Q ss_pred cceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEecC
Q psy12875 203 VQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKE 282 (308)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~~ 282 (308)
. .+++++|++++.++. ++++|++.+.. +|++++++|+++++. ++|+++++
T Consensus 108 -----~-------~~~~~l~~~~~~~~~--------~~~~h~~~v~~-------l~~~~~vla~s~~g~---i~a~~~~~ 157 (189)
T 1wl8_A 108 -----I-------IDEXEIFKGLPKRLK--------VWESHMDEVKE-------LPPKFKILARSETCP---IEAMKHEE 157 (189)
T ss_dssp -----E-------SCC--CCTTSCSEEE--------EEECCSEEEEE-------CCTTEEEEEEESSCS---CSEEEESS
T ss_pred -----E-------ecCchHHhCCCCceE--------EEEEeeeehhh-------CCCCcEEEEEcCCCC---EEEEEeCC
Confidence 0 125567877765443 37788877753 889999999998876 66999998
Q ss_pred CCEEEEeecCCccCcccC
Q psy12875 283 YPIVGIQFHPEKNAYEWT 300 (308)
Q Consensus 283 ~p~~GvQFHPE~~~~~~~ 300 (308)
+|++|+|||||++.++++
T Consensus 158 ~~~~gvQfHPE~~~~~~g 175 (189)
T 1wl8_A 158 LPIYGVQFHPEVAHTEKG 175 (189)
T ss_dssp SCEEEESSCTTSTTSTTH
T ss_pred ceEEEEecCCCcCCCcch
Confidence 889999999999987665
No 6
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=99.92 E-value=5.1e-25 Score=189.29 Aligned_cols=168 Identities=15% Similarity=0.161 Sum_probs=109.7
Q ss_pred ccchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcC--CCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCcc
Q psy12875 42 TSYIAASYVKNIEAAGARVVPILIGQDREYYAEILT--QINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFP 119 (308)
Q Consensus 42 ~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~--~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~P 119 (308)
++| ..+++++|++.|+++++++++.+.+++.+.+. +.+++|++||+.+... . . ....+.++.+ .++|
T Consensus 10 ~s~-~~~i~~~l~~~G~~~~v~~~~~~~~~i~~~l~~~~~~~iil~gGpg~~~~---~-~----~~~~l~~~~~--~~~P 78 (192)
T 1i1q_B 10 DSF-TWNLADQLRTNGHNVVIYRNHIPAQTLIDRLATMKNPVLMLSPGPGVPSE---A-G----CMPELLTRLR--GKLP 78 (192)
T ss_dssp CSS-HHHHHHHHHHTTCEEEEEETTSCSHHHHHHHTTCSSEEEEECCCSSCGGG---S-T----THHHHHHHHB--TTBC
T ss_pred ccH-HHHHHHHHHHCCCeEEEEECCCCHHHHHHHhhhccCCeEEECCCCcCchh---C-c----hHHHHHHHHh--cCCC
Confidence 454 56889999999999999998755455544433 3456777777533221 1 1 1122223344 3499
Q ss_pred EEEechhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccC
Q psy12875 120 VLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRK 199 (308)
Q Consensus 120 vlGIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~ 199 (308)
|||||+|||+|+.+ +||++.+... +.
T Consensus 79 ilGIC~G~Qll~~~-~Gg~v~~~~~------------~~----------------------------------------- 104 (192)
T 1i1q_B 79 IIGICLGHQAIVEA-YGGYVGQAGE------------IL----------------------------------------- 104 (192)
T ss_dssp EEEETHHHHHHHHH-TSCCCCC---------------CC-----------------------------------------
T ss_pred EEEECcChHHHHHH-hCCEEEeCCC------------cE-----------------------------------------
Confidence 99999999999999 8997632100 00
Q ss_pred CcccceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEE
Q psy12875 200 SCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVE 279 (308)
Q Consensus 200 ~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~ 279 (308)
+|....+. ..++++|++++.++. ++++|++.+.. +|++++++|.+ ++ ++++++
T Consensus 105 ~g~~~~~~--------~~~~~l~~~~~~~~~--------v~~~H~~~v~~-------lp~~~~v~a~~-~~---~~~ai~ 157 (192)
T 1i1q_B 105 HGKATSIE--------HDGQAMFAGLANPLP--------VARYHSLVGSN-------VPAGLTINAHF-NG---MVMAVR 157 (192)
T ss_dssp SSEEEEEE--------ECCCGGGTTSCSSEE--------EEECCC---CC-------CCTTCEEEEEE-TT---EEEEEE
T ss_pred ecceeEEe--------cCCChHHhcCCCCcE--------EEechhhHhhh-------CCCccEEEECC-CC---cEEEEE
Confidence 01111111 124568887765543 59999999863 88999999964 33 488999
Q ss_pred ecCCCEEEEeecCCccCcccCC
Q psy12875 280 HKEYPIVGIQFHPEKNAYEWTE 301 (308)
Q Consensus 280 ~~~~p~~GvQFHPE~~~~~~~~ 301 (308)
++++++||+|||||++.+++|.
T Consensus 158 ~~~~~~~gvQfHPE~~~~~~g~ 179 (192)
T 1i1q_B 158 HDADRVCGFQFHPESILTTQGA 179 (192)
T ss_dssp ETTTTEEEESSBTTSTTCTTHH
T ss_pred ECCCCEEEEEccCcccCCcccH
Confidence 9888999999999999887764
No 7
>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1
Probab=99.92 E-value=5.1e-25 Score=195.75 Aligned_cols=163 Identities=19% Similarity=0.206 Sum_probs=114.9
Q ss_pred HHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhh
Q psy12875 48 SYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGF 127 (308)
Q Consensus 48 ~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~ 127 (308)
++.+++++.|..+.+++++.. +.++..++++||||+|||+.+.... ....+.+...++++++.+.+ +||||||+||
T Consensus 28 ~i~~~l~~~G~~v~v~~~~~~-~~~~~~l~~~Dglil~GG~~~~~~~-~~~~~l~~~~~~i~~~~~~~--~PiLGIC~G~ 103 (239)
T 1o1y_A 28 MMEDIFREKNWSFDYLDTPKG-EKLERPLEEYSLVVLLGGYMGAYEE-EKYPFLKYEFQLIEEILKKE--IPFLGICLGS 103 (239)
T ss_dssp HHHHHHHHTTCEEEEECGGGT-CCCSSCGGGCSEEEECCCSCCTTCT-TTCTHHHHHHHHHHHHHHHT--CCEEEETHHH
T ss_pred HHHHHHHhCCCcEEEeCCcCc-cccccchhcCCEEEECCCCccccCC-ccChhHHHHHHHHHHHHHCC--CCEEEEchhH
Confidence 457899999999887776432 2233356789999999997443321 11223346677788887754 9999999999
Q ss_pred hHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCcccceee
Q psy12875 128 ELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVN 207 (308)
Q Consensus 128 Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~~~~~~ 207 (308)
|+|+.+ +||++.+... | |.+|+. .+.
T Consensus 104 QlL~~a-lGG~v~~~~~-------------g-----------------~~~G~~------------~v~----------- 129 (239)
T 1o1y_A 104 QMLAKV-LGASVYRGKN-------------G-----------------EEIGWY------------FVE----------- 129 (239)
T ss_dssp HHHHHH-TTCCEEECTT-------------C-----------------CEEEEE------------EEE-----------
T ss_pred HHHHHH-cCCeEecCCC-------------C-----------------CccccE------------EEE-----------
Confidence 999999 9998753210 0 112221 111
Q ss_pred ecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEecCCCEEE
Q psy12875 208 LNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEYPIVG 287 (308)
Q Consensus 208 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~~~p~~G 287 (308)
. .+++++|++++..+. ++++|++.+. +|++++++|+++++. ++++++++ ++|
T Consensus 130 ~-------~~~~~l~~~~~~~~~--------~~~~H~~~v~--------lp~~~~vlA~s~~~~---iea~~~~~--i~g 181 (239)
T 1o1y_A 130 K-------VSDNKFFREFPDRLR--------VFQWHGDTFD--------LPRRATRVFTSEKYE---NQGFVYGK--AVG 181 (239)
T ss_dssp E-------CCCCGGGTTSCSEEE--------EEEEESEEEC--------CCTTCEEEEECSSCS---CSEEEETT--EEE
T ss_pred E-------CCCCchHHhCCCCce--------eEeecCCccc--------cCCCCEEEEEcCCCC---EEEEEECC--EEE
Confidence 0 236678888776544 4889999873 789999999998877 55999985 999
Q ss_pred EeecCCccC
Q psy12875 288 IQFHPEKNA 296 (308)
Q Consensus 288 vQFHPE~~~ 296 (308)
+|||||++.
T Consensus 182 vQfHPE~~~ 190 (239)
T 1o1y_A 182 LQFHIEVGA 190 (239)
T ss_dssp ESSBSSCCH
T ss_pred EEeCccCCH
Confidence 999999964
No 8
>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens}
Probab=99.92 E-value=2.7e-25 Score=194.91 Aligned_cols=161 Identities=20% Similarity=0.299 Sum_probs=108.9
Q ss_pred HHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechh
Q psy12875 47 ASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLG 126 (308)
Q Consensus 47 ~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G 126 (308)
.++.++|+++|+.+++++++.+.++++. .++||||+|||+.+. |...... ..+++.+ .++||||||+|
T Consensus 38 ~~i~~~l~~~G~~~~vv~~~~~~~~l~~--~~~dglil~Gg~~~~-----~~~~~~~---~~~~~~~--~~~PilGIC~G 105 (218)
T 2vpi_A 38 KVIDRRVRELFVQSEIFPLETPAFAIKE--QGFRAIIISGGPNSV-----YAEDAPW---FDPAIFT--IGKPVLGICYG 105 (218)
T ss_dssp HHHHHHHHHTTCCEEEECTTCCHHHHHH--HTCSEEEEEC--------------CCC---CCGGGGT--SSCCEEEETHH
T ss_pred HHHHHHHHHCCCEEEEEECCCChHHHhh--cCCCEEEECCCCccc-----ccccchh---HHHHHHH--cCCCEEEEcHH
Confidence 4778999999999999998776554443 579999999997422 2110001 1122234 34899999999
Q ss_pred hhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCccccee
Q psy12875 127 FELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQV 206 (308)
Q Consensus 127 ~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~~~~~ 206 (308)
||+|+.+ +||++.+... +..|+ ..+
T Consensus 106 ~Qll~~~-~GG~v~~~~~-------------------------------~~~G~-----------------------~~v 130 (218)
T 2vpi_A 106 MQMMNKV-FGGTVHKKSV-------------------------------REDGV-----------------------FNI 130 (218)
T ss_dssp HHHHHHH-TTCCEEEEEE-------------------------------CSCEE-----------------------EEE
T ss_pred HHHHHHH-hCCceEeCCC-------------------------------CcccE-----------------------EEE
Confidence 9999998 8998643210 00011 011
Q ss_pred eecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEecCCCEE
Q psy12875 207 NLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEYPIV 286 (308)
Q Consensus 207 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~~~p~~ 286 (308)
.+ .++++||++++.++. ++++|++++.. +|++++++|++ ++ +++|+++++.+++
T Consensus 131 ~~-------~~~~~l~~~l~~~~~--------v~~~H~~~v~~-------l~~~~~vlA~s-~~---~i~ai~~~~~~i~ 184 (218)
T 2vpi_A 131 SV-------DNTCSLFRGLQKEEV--------VLLTHGDSVDK-------VADGFKVVARS-GN---IVAGIANESKKLY 184 (218)
T ss_dssp EE-------CTTSGGGTTCCSEEE--------EEECSEEEESS-------CCTTCEEEEEE-TT---EEEEEEETTTTEE
T ss_pred EE-------ccCChhHhcCCCCcE--------EeehhhhHhhh-------cCCCCEEEEEc-CC---eEEEEEECCCCEE
Confidence 11 136788888876543 48999999963 88999999998 43 5899999888999
Q ss_pred EEeecCCccCcccC
Q psy12875 287 GIQFHPEKNAYEWT 300 (308)
Q Consensus 287 GvQFHPE~~~~~~~ 300 (308)
|+|||||++.++.|
T Consensus 185 gvQfHPE~~~~~~g 198 (218)
T 2vpi_A 185 GAQFHPEVGLTENG 198 (218)
T ss_dssp EESSCTTSTTSTTH
T ss_pred EEEcCCCCCCChhH
Confidence 99999999986554
No 9
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=99.91 E-value=4.2e-24 Score=209.80 Aligned_cols=185 Identities=15% Similarity=0.171 Sum_probs=123.4
Q ss_pred CCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCc
Q psy12875 17 DTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNG 96 (308)
Q Consensus 17 ~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~ 96 (308)
..+.|+|+-.. .+|. +++.++|+++|+.++++|++.+.+++... ++||||||||+.+.... .
T Consensus 6 ~~~~IlIlD~g--------------~~~~-~~i~r~lr~~G~~~~i~p~~~~~~~i~~~--~~dgiILsGGp~s~~~~-~ 67 (525)
T 1gpm_A 6 HKHRILILDFG--------------SQYT-QLVARRVRELGVYCELWAWDVTEAQIRDF--NPSGIILSGGPESTTEE-N 67 (525)
T ss_dssp TSSEEEEEECS--------------CTTH-HHHHHHHHHTTCEEEEEESCCCHHHHHHH--CCSEEEECCCSSCTTST-T
T ss_pred CCCEEEEEECC--------------CccH-HHHHHHHHHCCCEEEEEECCCCHHHHhcc--CCCEEEECCcCcccccc-C
Confidence 45778877432 2353 67899999999999999988776655543 67999999998644331 0
Q ss_pred hhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCC
Q psy12875 97 YADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFP 176 (308)
Q Consensus 97 ~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~P 176 (308)
. ..+ .+++.+ .++||||||+|||+|+.+ +||++.+.. .+
T Consensus 68 ~----~~~---~~~~~~--~g~PvLGIC~G~Qlla~~-~GG~V~~~~-------------------------------~~ 106 (525)
T 1gpm_A 68 S----PRA---PQYVFE--AGVPVFGVCYGMQTMAMQ-LGGHVEASN-------------------------------ER 106 (525)
T ss_dssp C----CCC---CGGGGT--SSSCEEEETHHHHHHHHH-HTCEEECCS-------------------------------SC
T ss_pred C----cch---HHHHHH--CCCCEEEEChHHHHHHHH-cCCEEEeCC-------------------------------Cc
Confidence 0 001 122233 348999999999999988 888763211 01
Q ss_pred eeeeehhHHHHHHHhCCcccccCCcccceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccC
Q psy12875 177 VLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYG 256 (308)
Q Consensus 177 ilGiClG~Qll~~~~G~~v~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~ 256 (308)
.+|+- .+ .. ..+++||++++............++++|++.|..
T Consensus 107 e~G~~------------~v-----------~~-------~~~~~L~~~l~~~~~~~~~~~~~v~~~H~~~V~~------- 149 (525)
T 1gpm_A 107 EFGYA------------QV-----------EV-------VNDSALVRGIEDALTADGKPLLDVWMSHGDKVTA------- 149 (525)
T ss_dssp EEEEE------------EE-----------EE-------CSCCTTTTTCCSEECTTSCEEEEEEEEECSEEEE-------
T ss_pred ccceE------------EE-----------Ee-------CCCCHhhccCccccccccccceEEEEEccceeee-------
Confidence 11110 11 11 1356788888651100000012358999999974
Q ss_pred CCCCeEEEEEecCCCceEEEEEEecCCCEEEEeecCCccCcccC
Q psy12875 257 LTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNAYEWT 300 (308)
Q Consensus 257 l~~~~~via~s~~~~~~~v~ai~~~~~p~~GvQFHPE~~~~~~~ 300 (308)
+|++|+++|+++++. ++|++++++++||+|||||++.++.|
T Consensus 150 lp~g~~v~A~s~~~~---i~ai~~~~~~i~gvQFHPE~~~~~~g 190 (525)
T 1gpm_A 150 IPSDFITVASTESCP---FAIMANEEKRFYGVQFHPEVTHTRQG 190 (525)
T ss_dssp CCTTCEEEEECSSCS---CSEEEETTTTEEEESBCTTSTTSTTH
T ss_pred CCCCCEEEEECCCCC---EEEEEECCCCEEEEecCCCCCcchhH
Confidence 899999999998876 66999988899999999999987654
No 10
>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*
Probab=99.91 E-value=3.2e-24 Score=191.52 Aligned_cols=163 Identities=12% Similarity=0.112 Sum_probs=114.7
Q ss_pred HHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhh
Q psy12875 48 SYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGF 127 (308)
Q Consensus 48 ~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~ 127 (308)
++.++|++.|.++.++.+...+. ++..++++||||+|||+.+... . ..+.+.+.++++++.+.+ +||||||+||
T Consensus 19 ~i~~~l~~~G~~v~v~~~~~~~~-~p~~~~~~d~lIl~GGp~~~~d--~-~~~~~~~~~~i~~~~~~~--~PvlGIC~G~ 92 (250)
T 3m3p_A 19 HFGDFLAGEHIPFQVLRMDRSDP-LPAEIRDCSGLAMMGGPMSAND--D-LPWMPTLLALIRDAVAQR--VPVIGHCLGG 92 (250)
T ss_dssp HHHHHHHHTTCCEEEEEGGGTCC-CCSCGGGSSEEEECCCSSCTTS--C-CTTHHHHHHHHHHHHHHT--CCEEEETHHH
T ss_pred HHHHHHHHCCCeEEEEeccCCCc-CcCccccCCEEEECCCCCcccc--c-chHHHHHHHHHHHHHHcC--CCEEEECHHH
Confidence 56788999999999888653221 2224678999999999865433 1 122345667778777754 9999999999
Q ss_pred hHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCcccceee
Q psy12875 128 ELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVN 207 (308)
Q Consensus 128 Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~~~~~~ 207 (308)
|+|+.+ +||++.+.. .|.+|+. .|...
T Consensus 93 Qll~~~-lGG~V~~~~-------------------------------~~e~G~~------------~v~~~--------- 119 (250)
T 3m3p_A 93 QLLAKA-MGGEVTDSP-------------------------------HAEIGWV------------RAWPQ--------- 119 (250)
T ss_dssp HHHHHH-TTCCEEEEE-------------------------------EEEEEEE------------EEEEC---------
T ss_pred HHHHHH-hCCEEEeCC-------------------------------CCceeeE------------EEEEe---------
Confidence 999999 999875321 0122321 11110
Q ss_pred ecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEecCCCEEE
Q psy12875 208 LNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEYPIVG 287 (308)
Q Consensus 208 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~~~p~~G 287 (308)
+....+++| +++..+. ++++|++.+. +|++++++|+++++. ++|+++++ ++||
T Consensus 120 ------~~~~~~~l~-g~~~~~~--------v~~~H~~~v~--------lp~~~~vlA~s~~~~---~~a~~~~~-~~~G 172 (250)
T 3m3p_A 120 ------HVPQALEWL-GTWDELE--------LFEWHYQTFS--------IPPGAVHILRSEHCA---NQAYVLDD-LHIG 172 (250)
T ss_dssp ------SSHHHHHHH-SCSSCEE--------EEEEEEEEEC--------CCTTEEEEEEETTEE---EEEEEETT-TEEE
T ss_pred ------cCCCCcccc-cCCCccE--------EEEEccceee--------cCCCCEEEEEeCCCC---EEEEEECC-eeEE
Confidence 000124577 6665544 4999999983 899999999998875 77999987 6999
Q ss_pred EeecCCccC
Q psy12875 288 IQFHPEKNA 296 (308)
Q Consensus 288 vQFHPE~~~ 296 (308)
+|||||++.
T Consensus 173 vQfHPE~~~ 181 (250)
T 3m3p_A 173 FQCHIEMQA 181 (250)
T ss_dssp ESSCTTCCH
T ss_pred EEeCCcCCH
Confidence 999999974
No 11
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=99.91 E-value=1.7e-24 Score=188.51 Aligned_cols=175 Identities=21% Similarity=0.345 Sum_probs=106.5
Q ss_pred HHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHH--HHHHHHHHHcCCCccEEEec
Q psy12875 47 ASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQI--LHLVDKINEEGVTFPVLGVC 124 (308)
Q Consensus 47 ~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~--~e~~~~~~~~g~~~PvlGIC 124 (308)
.|+.++|+++|++++++. +++ .++++||||+|||++ +....+.+ .++++.+.+. ++||||||
T Consensus 16 ~si~~al~~~G~~~~v~~---~~~----~l~~~D~lilPG~g~-------~~~~~~~~~~~~~i~~~~~~--~~PvlGIC 79 (211)
T 4gud_A 16 SSVKFAIERLGYAVTISR---DPQ----VVLAADKLFLPGVGT-------ASEAMKNLTERDLIELVKRV--EKPLLGIC 79 (211)
T ss_dssp HHHHHHHHHTTCCEEEEC---CHH----HHHHCSEEEECCCSC-------HHHHHHHHHHTTCHHHHHHC--CSCEEEET
T ss_pred HHHHHHHHHCCCEEEEEC---CHH----HHhCCCEEEECCCCC-------HHHHHHHHHhcChHHHHHHc--CCCEEEEc
Confidence 578999999999988753 344 355689999999863 33322222 2234455553 49999999
Q ss_pred hhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCcccc
Q psy12875 125 LGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQ 204 (308)
Q Consensus 125 ~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~~~ 204 (308)
+|||+|+.+ +|+....... ...++.+.+++.+.. .......+..|
T Consensus 80 lG~QlL~~~-~g~~~~~~~~----~~~gl~~~~~~v~~~-----~~~~~~~~~~~------------------------- 124 (211)
T 4gud_A 80 LGMQLLGKL-SEEKGQKADE----IVQCLGLVDGEVRLL-----QTGDLPLPHMG------------------------- 124 (211)
T ss_dssp HHHHTTSSE-ECCC----CC----CEECCCSSSCEEEEC-----CCTTSCSSEEE-------------------------
T ss_pred hhHhHHHHH-hCCcccccCC----ccccceeccceEEEc-----ccCCcceeecc-------------------------
Confidence 999999999 8887542211 112344444432211 00011122222
Q ss_pred eeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEecCCC
Q psy12875 205 QVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEYP 284 (308)
Q Consensus 205 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~~~p 284 (308)
++.... ...++++++++.... ++++|++.+. .+..++|+++++.. ++++++. +|
T Consensus 125 ---~~~~~~--~~~~~l~~~l~~~~~--------~~~~H~~~v~----------~~~~~~a~~~~g~~-~~~~v~~--~~ 178 (211)
T 4gud_A 125 ---WNTVQV--KEGHPLFNGIEPDAY--------FYFVHSFAMP----------VGDYTIAQCEYGQP-FSAAIQA--GN 178 (211)
T ss_dssp ---EECCEE--CTTCGGGTTCCTTCC--------EEEEESEECC----------CCTTEEEEEESSSE-EEEEEEE--TT
T ss_pred ---ceeeee--eccChhhcCCCCCcE--------EEEEeeEEeC----------CCCeEEEEecCCCe-EEEEEeC--CC
Confidence 211111 246788988877654 4899998764 35568898877653 4666665 47
Q ss_pred EEEEeecCCccCccc
Q psy12875 285 IVGIQFHPEKNAYEW 299 (308)
Q Consensus 285 ~~GvQFHPE~~~~~~ 299 (308)
+||+|||||++ ++.
T Consensus 179 v~GvQFHPE~s-~~~ 192 (211)
T 4gud_A 179 YYGVQFHPERS-SKA 192 (211)
T ss_dssp EEEESSCGGGS-HHH
T ss_pred EEEEEccCEec-Ccc
Confidence 99999999986 443
No 12
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}
Probab=99.91 E-value=4.9e-24 Score=210.28 Aligned_cols=199 Identities=19% Similarity=0.260 Sum_probs=124.5
Q ss_pred ccchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEE
Q psy12875 42 TSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVL 121 (308)
Q Consensus 42 ~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~Pvl 121 (308)
.+| .+++.++|+++|+.+++++++.+.+++. ..++||||+|||+.+.... ......+.+++ .+.+ .++|||
T Consensus 17 s~~-~~~I~r~lre~Gv~~eiv~~~~~~~~i~--~~~~dgIIlsGGp~s~~~~-~~~~~~~~l~~---~a~~--~g~PvL 87 (556)
T 3uow_A 17 SQY-FHLIVKRLNNIKIFSETKDYGVELKDIK--DMNIKGVILSGGPYSVTEA-GSPHLKKEVFE---YFLE--KKIPIF 87 (556)
T ss_dssp CTT-HHHHHHHHHHTTCCEEEEETTCCGGGTT--TSCEEEEEECCCSCCTTST-TCCCCCHHHHH---HHHH--TTCCEE
T ss_pred Ccc-HHHHHHHHHHCCCeEEEEECCCCHHHHh--hcCCCEEEECCCCCccccc-CCcchhHHHHH---Hhhh--cCCCEE
Confidence 345 4688999999999999999876554332 2378999999998655432 11111122333 2334 349999
Q ss_pred EechhhhHHHHHhcCCccccccccccccccceeeecCCC---CcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875 122 GVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAK---RSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFR 198 (308)
Q Consensus 122 GIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~---~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~ 198 (308)
|||+|||+|+.+ +||++.+... .+.....+.+.++.. .|. .+.+....|
T Consensus 88 GIC~G~QlLa~~-lGG~V~~~~~-~E~G~~~l~~~~~~~~~~~p~----v~~~~~~~~---------------------- 139 (556)
T 3uow_A 88 GICYGMQEIAVQ-MNGEVKKSKT-SEYGCTDVNILRNDNINNITY----CRNFGDSSS---------------------- 139 (556)
T ss_dssp EETHHHHHHHHH-TTCEEEEEEE-EEEEEEEEEECCTTGGGGCSG----GGGC---CC----------------------
T ss_pred EECHHHHHHHHH-hCCcEecCCC-cccCCcceeeccCcccccccc----eeccccccc----------------------
Confidence 999999999999 9998854321 111111233322210 000 000000001
Q ss_pred CCcccceeeecccccCCCCCCcCccCC-ChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEE
Q psy12875 199 KSCKVQQVNLNLKFLPGAKRSSLFSQV-PSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVST 277 (308)
Q Consensus 199 ~~g~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~a 277 (308)
.++|..........+++|+++ +..+. ++++|++.+.. +|++++++|+++++. ++|
T Consensus 140 ------~mg~~~n~~~~~~~~~Lf~gl~~~~~~--------v~~~H~d~V~~-------lp~g~~vlA~s~~~~---i~a 195 (556)
T 3uow_A 140 ------AMDLYSNYKLMNETCCLFENIKSDITT--------VWMNHNDEVTK-------IPENFYLVSSSENCL---ICS 195 (556)
T ss_dssp ------HHHHHTTSCCCC--CGGGTTCCSSEEE--------EEEEEEEEEEE-------CCTTCEEEEEETTEE---EEE
T ss_pred ------ccccccccccccccchhhcccccCceE--------EEEEccceeec-------cCCCcEEEEEeCCCC---EEE
Confidence 122200000002355788888 65544 49999999974 899999999998874 889
Q ss_pred EEecCCCEEEEeecCCccCcccCC
Q psy12875 278 VEHKEYPIVGIQFHPEKNAYEWTE 301 (308)
Q Consensus 278 i~~~~~p~~GvQFHPE~~~~~~~~ 301 (308)
++++++++||+|||||++.+++|.
T Consensus 196 i~~~~~~i~GvQFHPE~~~~~~G~ 219 (556)
T 3uow_A 196 IYNKEYNIYGVQYHPEVYESLDGE 219 (556)
T ss_dssp EEETTTTEEEESSCTTSTTSTTHH
T ss_pred EEECCCCEEEEEcCCCCCccccch
Confidence 999888999999999999987653
No 13
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=99.90 E-value=3.6e-24 Score=210.30 Aligned_cols=174 Identities=16% Similarity=0.221 Sum_probs=112.8
Q ss_pred cchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEE
Q psy12875 43 SYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLG 122 (308)
Q Consensus 43 ~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlG 122 (308)
+|. +++.++|+++|+.++++|++.+.+++.. .++||||+|||+.++.. . +.....+.+.+ .++||||
T Consensus 21 ~~~-~~i~r~lr~~Gv~~~i~p~~~~~~~i~~--~~~dgIILsGGp~sv~~-----~---~~~~~~~~~~~--~~~PvLG 87 (527)
T 3tqi_A 21 QYA-QLIARRVREIGVYCELMPCDIDEETIRD--FNPHGIILSGGPETVTL-----S---HTLRAPAFIFE--IGCPVLG 87 (527)
T ss_dssp TTH-HHHHHHHHHHTCEEEEEETTCCSSSSTT--TCCSEEEECCCCC-----------------CCCSTTT--SSSCEEE
T ss_pred ccH-HHHHHHHHHCCCeEEEEECCCCHHHHHh--cCCCEEEECCcCccccc-----C---CChhhHHHHHh--cCCCEEE
Confidence 453 6889999999999999998765543221 15699999999864322 1 11111223334 3489999
Q ss_pred echhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCcc
Q psy12875 123 VCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCK 202 (308)
Q Consensus 123 IC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~ 202 (308)
||+|||+|+.+ +||++.+... +.+|.- .+
T Consensus 88 IC~G~Qlla~~-lGG~V~~~~~-------------------------------~e~G~~------------~v------- 116 (527)
T 3tqi_A 88 ICYGMQTMAYQ-LGGKVNRTAK-------------------------------AEFGHA------------QL------- 116 (527)
T ss_dssp ETHHHHHHHHH-SSSCBC------------------------------------CEEEE------------EE-------
T ss_pred EChHHHHHHHH-cCCeEEeCCC-------------------------------ccccce------------EE-------
Confidence 99999999988 8887642110 001110 11
Q ss_pred cceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEecC
Q psy12875 203 VQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKE 282 (308)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~~ 282 (308)
.. ..++++|++++............++++|++.|.. +|++|+++|+++++. ++|+++++
T Consensus 117 ----~~-------~~~~~l~~~l~~~~~~~~~~~~~v~~~H~d~v~~-------lp~g~~v~A~s~~~~---i~ai~~~~ 175 (527)
T 3tqi_A 117 ----RV-------LNPAFLFDGIEDQVSPQGEPLLDVWMSHGDIVSE-------LPPGFEATACTDNSP---LAAMADFK 175 (527)
T ss_dssp ----EE-------SSCTTTTSSCCSBCCTTSCCEEEEEEESSSCBCS-------CCTTCEEEEEETTEE---EEEEECSS
T ss_pred ----EE-------cCCChhhcCCccccccccccceEEEEEcccchhc-------cCCCCEEEEEeCCCc---EEEEEcCC
Confidence 11 1356788888752100000011359999999863 899999999997764 88999988
Q ss_pred CCEEEEeecCCccCcccCC
Q psy12875 283 YPIVGIQFHPEKNAYEWTE 301 (308)
Q Consensus 283 ~p~~GvQFHPE~~~~~~~~ 301 (308)
+++||+|||||++.+++|.
T Consensus 176 ~~~~GvQFHPE~~~t~~G~ 194 (527)
T 3tqi_A 176 RRFFGLQFHPEVTHTPQGH 194 (527)
T ss_dssp SCEEEESBCSSSTTSTTHH
T ss_pred CCEEEEEeccccccccccc
Confidence 8999999999999987763
No 14
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=99.90 E-value=2.7e-24 Score=210.25 Aligned_cols=165 Identities=16% Similarity=0.234 Sum_probs=116.3
Q ss_pred ccchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEE
Q psy12875 42 TSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVL 121 (308)
Q Consensus 42 ~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~Pvl 121 (308)
.+|. +++.++|+++|+.++++|++.+.+++... ++||||||||+.+.... ... .+ .+++.+ .++|||
T Consensus 9 ~~~~-~~i~r~l~~~G~~~~i~p~~~~~~~i~~~--~~dgiIlsGGp~s~~~~-~~~----~~---~~~~~~--~~~PvL 75 (503)
T 2ywb_A 9 SQYT-RLIARRLRELRAFSLILPGDAPLEEVLKH--RPQALILSGGPRSVFDP-DAP----RP---DPRLFS--SGLPLL 75 (503)
T ss_dssp CTTH-HHHHHHHHTTTCCEEEEETTCCHHHHHTT--CCSEEEECCCSSCSSCT-TCC----CC---CGGGGC--SSCCEE
T ss_pred CcHH-HHHHHHHHHCCCEEEEEECCCCHHHHHhc--CCCEEEECCCCchhccC-CCc----ch---HHHHHh--CCCCEE
Confidence 4564 78999999999999999987666555432 57999999998654331 000 00 122233 348999
Q ss_pred EechhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCc
Q psy12875 122 GVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSC 201 (308)
Q Consensus 122 GIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g 201 (308)
|||+|||+|+.+ +||++.+... +.+|+. .+
T Consensus 76 GIC~G~Qlla~~-~GG~v~~~~~-------------------------------~e~G~~------------~v------ 105 (503)
T 2ywb_A 76 GICYGMQLLAQE-LGGRVERAGR-------------------------------AEYGKA------------LL------ 105 (503)
T ss_dssp EETHHHHHHHHT-TTCEEECC----------------------------------CEEEE------------EC------
T ss_pred EECHHHHHHHHH-hCCeEeeCCC-------------------------------CccceE------------EE------
Confidence 999999999998 8887642110 011110 11
Q ss_pred ccceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEec
Q psy12875 202 KVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHK 281 (308)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~ 281 (308)
+ . .. +++|++++..+. ++++|++.|.. +|++|+++|+++++. ++|++++
T Consensus 106 -------~--~---~~-~~l~~~~~~~~~--------v~~~H~~~v~~-------lp~g~~v~A~s~~~~---i~ai~~~ 154 (503)
T 2ywb_A 106 -------T--R---HE-GPLFRGLEGEVQ--------VWMSHQDAVTA-------PPPGWRVVAETEENP---VAAIASP 154 (503)
T ss_dssp -------S--E---EC-SGGGTTCCSCCE--------EEEECSCEEEE-------CCTTCEEEEECSSCS---CSEEECT
T ss_pred -------E--e---cC-cHHhhcCCCccE--------EEEECCCcccc-------CCCCCEEEEEECCCC---EEEEEeC
Confidence 0 1 12 678888875443 58999999974 899999999998876 6699998
Q ss_pred CCCEEEEeecCCccCcccC
Q psy12875 282 EYPIVGIQFHPEKNAYEWT 300 (308)
Q Consensus 282 ~~p~~GvQFHPE~~~~~~~ 300 (308)
++++||+|||||++.++.|
T Consensus 155 ~~~~~gvQFHPE~~~~~~g 173 (503)
T 2ywb_A 155 DGRAYGVQFHPEVAHTPKG 173 (503)
T ss_dssp TSSEEEESBCTTSTTSTTH
T ss_pred CCCEEEEecCCCccccccc
Confidence 8899999999999987654
No 15
>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B*
Probab=99.90 E-value=9.5e-23 Score=191.43 Aligned_cols=157 Identities=16% Similarity=0.252 Sum_probs=111.5
Q ss_pred HHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechh
Q psy12875 47 ASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLG 126 (308)
Q Consensus 47 ~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G 126 (308)
.++.++|+++|+.++++|++.+.+++.. .++|||+|+||+.+... .....+.++++.++ ++||||||+|
T Consensus 202 ~ni~r~L~~~G~~v~vvp~~~~~e~i~~--~~~DGliLsGGPgdp~~-------~~~~~~~Ir~~~~~--~~PILGIClG 270 (379)
T 1a9x_B 202 RNILRMLVDRGCRLTIVPAQTSAEDVLK--MNPDGIFLSNGPGDPAP-------CDYAITAIQKFLET--DIPVFGICLG 270 (379)
T ss_dssp HHHHHHHHHTTEEEEEEETTCCHHHHHT--TCCSEEEECCCSBCSTT-------CHHHHHHHHHHTTS--CCCEEEETHH
T ss_pred HHHHHHHHHCCCEEEEEeccCCHHHHhh--cCCCEEEEeCCCCChHH-------HHHHHHHHHHHHHc--CCCEEEECch
Confidence 5789999999999999998766544432 37999999999744322 13566777777774 4999999999
Q ss_pred hhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCccccee
Q psy12875 127 FELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQV 206 (308)
Q Consensus 127 ~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~~~~~ 206 (308)
||+|+.+ +||++.+... .+ .|.
T Consensus 271 ~QLLa~A-~GG~v~k~~~---------gh----------------------~g~-------------------------- 292 (379)
T 1a9x_B 271 HQLLALA-SGAKTVKMKF---------GH----------------------HGG-------------------------- 292 (379)
T ss_dssp HHHHHHH-TTCCEEEEEE---------EE----------------------EEE--------------------------
T ss_pred HHHHHHH-hCcEEEeccc---------cc----------------------ccC--------------------------
Confidence 9999999 9998753211 01 000
Q ss_pred eecccccCCCCCCcCccCCC-hhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEe-cCCCceEEEEEEecCCC
Q psy12875 207 NLNLKFLPGAKRSSLFSQVP-SKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLS-KYKSWEFVSTVEHKEYP 284 (308)
Q Consensus 207 ~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s-~~~~~~~v~ai~~~~~p 284 (308)
.+++. .++ .++ ..+.++|+++|+..+ +|+++++++++ +|+. ++|++++++|
T Consensus 293 -----------n~pv~-~~~~g~v-------~its~~H~~aV~~~~-----Lp~~~~v~a~s~~Dg~---ieai~~~~~p 345 (379)
T 1a9x_B 293 -----------NHPVK-DVEKNVV-------MITAQNHGFAVDEAT-----LPANLRVTHKSLFDGT---LQGIHRTDKP 345 (379)
T ss_dssp -----------EEEEE-ETTTTEE-------EEEEEEEEEEECSTT-----CCTTEEEEEEETTTCC---EEEEEESSSS
T ss_pred -----------ceeeE-ecCCCcE-------EEEecCccceEeccc-----CCCCeEEEEEeCCCCc---EEEEEECCCC
Confidence 00000 000 011 123678999997543 78999999998 5665 7899999889
Q ss_pred EEEEeecCCccCccc
Q psy12875 285 IVGIQFHPEKNAYEW 299 (308)
Q Consensus 285 ~~GvQFHPE~~~~~~ 299 (308)
+||+|||||++..+.
T Consensus 346 i~gVQFHPE~~~~p~ 360 (379)
T 1a9x_B 346 AFSFQGNPEASPGPH 360 (379)
T ss_dssp EEEESSCTTCSSSCS
T ss_pred EEEEEeCCcCCCCcc
Confidence 999999999997653
No 16
>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans}
Probab=99.90 E-value=1.5e-23 Score=185.80 Aligned_cols=166 Identities=15% Similarity=0.148 Sum_probs=113.9
Q ss_pred HHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHH--HHHHHHHHHHHHcCCCccEEEech
Q psy12875 48 SYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAG--RQILHLVDKINEEGVTFPVLGVCL 125 (308)
Q Consensus 48 ~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~--~~~~e~~~~~~~~g~~~PvlGIC~ 125 (308)
.+.+++++.|.++.++++...+ .++..++++||||++||+.+.........+. +...++++++.+.+ +||||||+
T Consensus 16 ~~~~~l~~~g~~~~~~~~~~~~-~~p~~~~~~d~lii~GGp~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~PvLGICl 92 (236)
T 3l7n_A 16 AYLAWAALRGHDVSMTKVYRYE-KLPKDIDDFDMLILMGGPQSPSSTKKEFPYYDAQAEVKLIQKAAKSE--KIIVGVCL 92 (236)
T ss_dssp HHHHHHHHTTCEEEEEEGGGTC-CCCSCGGGCSEEEECCCSSCTTCCTTTCTTCCHHHHHHHHHHHHHTT--CEEEEETH
T ss_pred HHHHHHHHCCCeEEEEeeeCCC-CCCCCccccCEEEECCCCCCcccccccCcccchHHHHHHHHHHHHcC--CCEEEEch
Confidence 5578899999999988875432 1222467899999999986532100111122 23567788888754 99999999
Q ss_pred hhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCcccce
Q psy12875 126 GFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQ 205 (308)
Q Consensus 126 G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~~~~ 205 (308)
|||+|+.+ +||++.+... |.+|+- .|...
T Consensus 93 G~QlL~~~-~Gg~v~~~~~-------------------------------~~~G~~------------~v~~~------- 121 (236)
T 3l7n_A 93 GAQLMGVA-YGADYLHSPK-------------------------------KEIGNY------------LISLT------- 121 (236)
T ss_dssp HHHHHHHH-TTCCCEEEEE-------------------------------EEEEEE------------EEEEC-------
T ss_pred HHHHHHHH-hCCEEecCCC-------------------------------ceeeeE------------EEEEc-------
Confidence 99999999 9998743211 122221 11111
Q ss_pred eeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEecCCCE
Q psy12875 206 VNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEYPI 285 (308)
Q Consensus 206 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~~~p~ 285 (308)
...+++++|++++..+. ++++|++.. .+|++++++|+++++. ++|+++++ ++
T Consensus 122 --------~~~~~~~l~~~~~~~~~--------v~~~H~~~~--------~lp~~~~vla~s~~~~---~~a~~~~~-~v 173 (236)
T 3l7n_A 122 --------EAGKMDSYLSDFSDDLL--------VGHWHGDMP--------GLPDKAQVLAISQGCP---RQIIKFGP-KQ 173 (236)
T ss_dssp --------TTGGGCGGGTTSCSEEE--------EEEEEEEEC--------CCCTTCEEEEECSSCS---CSEEEEET-TE
T ss_pred --------cCcccChHHhcCCCCcE--------EEEecCCcc--------cCCChheEEEECCCCC---EEEEEECC-CE
Confidence 11125678888876654 488999752 2899999999998887 44888875 79
Q ss_pred EEEeecCCcc
Q psy12875 286 VGIQFHPEKN 295 (308)
Q Consensus 286 ~GvQFHPE~~ 295 (308)
||+|||||++
T Consensus 174 ~gvQfHPE~~ 183 (236)
T 3l7n_A 174 YAFQCHLEFT 183 (236)
T ss_dssp EEESSBSSCC
T ss_pred EEEEeCCCCC
Confidence 9999999997
No 17
>2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=99.89 E-value=2.7e-23 Score=177.96 Aligned_cols=173 Identities=16% Similarity=0.176 Sum_probs=109.5
Q ss_pred CCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCc
Q psy12875 17 DTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNG 96 (308)
Q Consensus 17 ~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~ 96 (308)
|||+|||++.... ..++.++|+++|+++++++.. + .++++|||++|||... .
T Consensus 1 ~~p~Igi~~~~~~----------------~~~~~~~l~~~G~~~~~~~~~---~----~l~~~dglil~GG~~~-----~ 52 (191)
T 2ywd_A 1 MRGVVGVLALQGD----------------FREHKEALKRLGIEAKEVRKK---E----HLEGLKALIVPGGEST-----T 52 (191)
T ss_dssp --CCEEEECSSSC----------------HHHHHHHHHTTTCCCEEECSG---G----GGTTCSEEEECSSCHH-----H
T ss_pred CCcEEEEEecCCc----------------hHHHHHHHHHCCCEEEEeCCh---h----hhccCCEEEECCCChh-----h
Confidence 4899999986321 136789999999998887632 2 4678999999999411 1
Q ss_pred hhHH--HHHHHHHHHHHHHcCCC-ccEEEechhhhHHHHHhcCC-ccccccccccccccceeeecCCCCcchhhhHhhhc
Q psy12875 97 YADA--GRQILHLVDKINEEGVT-FPVLGVCLGFELILQVSNND-TDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEG 172 (308)
Q Consensus 97 ~~~~--~~~~~e~~~~~~~~g~~-~PvlGIC~G~Qll~~~~~gg-~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~ 172 (308)
+... .+.+.+.++++.+ .+ +||||||+|||+|+.+ +|| +..+. +.+.|+
T Consensus 53 ~~~~~~~~~~~~~i~~~~~--~~~~PilGiC~G~Q~l~~~-~gg~~~~~~----------lg~~~~-------------- 105 (191)
T 2ywd_A 53 IGKLAREYGIEDEVRKRVE--EGSLALFGTCAGAIWLAKE-IVGYPEQPR----------LGVLEA-------------- 105 (191)
T ss_dssp HHHHHHHTTHHHHHHHHHH--TTCCEEEEETHHHHHHEEE-ETTCTTCCC----------CCCEEE--------------
T ss_pred hHHhhhhhhHHHHHHHHHH--CCCCeEEEECHHHHHHHHH-hCCCCCCcc----------ccccce--------------
Confidence 2222 2345677888777 45 8999999999999999 888 54221 222222
Q ss_pred CCCCeeeeehhHHHHHHHhCCcccccCCcccceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccc
Q psy12875 173 VTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDM 252 (308)
Q Consensus 173 ~~~PilGiClG~Qll~~~~G~~v~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~ 252 (308)
++.+..++.. ...+ ..+..+.++ .++ .++++|++.+..
T Consensus 106 ---------------------~~~~~~~g~~-~~~~--------~~~~~~~~~-~~~--------~~~~~Hs~~v~~--- 143 (191)
T 2ywd_A 106 ---------------------WVERNAFGRQ-VESF--------EEDLEVEGL-GSF--------HGVFIRAPVFRR--- 143 (191)
T ss_dssp ---------------------EEETTCSCCS-SSEE--------EEEEEETTT-EEE--------EEEEESCCEEEE---
T ss_pred ---------------------EEEcCCcCCc-cccc--------cccccccCC-Cce--------eEEEEcccceec---
Confidence 1111111100 0000 001112222 222 247899998863
Q ss_pred cccCCCCCeEEEEEecCCCceEEEEEEecCCCEEEEeecCCccC
Q psy12875 253 IKYGLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNA 296 (308)
Q Consensus 253 ~~~~l~~~~~via~s~~~~~~~v~ai~~~~~p~~GvQFHPE~~~ 296 (308)
+|++++++|++ + . +++++++++ ++|+|||||++.
T Consensus 144 ----l~~~~~~~a~~-~-~--~~~a~~~~~--~~gvQfHPE~~~ 177 (191)
T 2ywd_A 144 ----LGEGVEVLARL-G-D--LPVLVRQGK--VLASSFHPELTE 177 (191)
T ss_dssp ----ECTTCEEEEEE-T-T--EEEEEEETT--EEEESSCGGGSS
T ss_pred ----cCCCcEEEEEE-C-C--EEEEEEECC--EEEEEeCCCCCC
Confidence 77899999998 4 3 588999874 999999999864
No 18
>2w7t_A CTP synthetase, putative cytidine triphosphate synthase; glutaminase domain, trypsanosoma brucei, ligase, acivicin; HET: 5CS; 2.10A {Trypanosoma brucei}
Probab=99.88 E-value=7.4e-23 Score=185.18 Aligned_cols=219 Identities=15% Similarity=0.148 Sum_probs=121.6
Q ss_pred CEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChhH------HHHhcCCCCEEEEcCCCCCCC
Q psy12875 19 PVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREY------YAEILTQINGVVIPGGGTGFD 92 (308)
Q Consensus 19 P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~------~~~~l~~~dGlilpGG~~~~~ 92 (308)
+.|+|...-.. ...+++++++ .++..+..+.|+.+.+++++..... ++..++++||||+|||..+
T Consensus 9 ~~Iaivg~y~~------~~~dny~S~~-~aL~~~g~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~dgiil~GG~~~-- 79 (273)
T 2w7t_A 9 VRIAFVGKYLQ------DAGDTYFSVL-QCFEHCQIALQVRLDILYVDSEELEGPNADEARKALLGCDGIFVPGGFGN-- 79 (273)
T ss_dssp EEEEEEECCHH------HHTTTTHHHH-HHHHHHHHHHTCCEEEEEEEGGGGSSTTTHHHHHHHHTCSEEEECCCCTT--
T ss_pred CEEEEEeCCCc------CCchHHHHHH-HHHHHHHHhcCCceEEeccChhhcccccchhHHHHHhhCCEEEecCCCCC--
Confidence 78999854310 0123334433 3445555566778888887643211 3345778999999998522
Q ss_pred CCCchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHHhcCCccc--cccccccccccceeeecCCCCcchhhhHhh
Q psy12875 93 HPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQVSNNDTDF--RKSCKVQQVNLNLKFLPGAKRSSLFSQINE 170 (308)
Q Consensus 93 ~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~~~gg~~~--~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~ 170 (308)
+ . ....+++++.+.+.+ +||||||+|||+|+.+ +||++. ++.. ...+ ++..
T Consensus 80 ~---~---~~~~~~~i~~~~~~~--~PilGIC~G~Qll~~a-~Gg~v~~~~~~~-s~E~--------~~~~--------- 132 (273)
T 2w7t_A 80 R---G---VDGKCAAAQVARMNN--IPYFGVXLGMQVAVIE-LSRNVVGWSDAN-SEEF--------NKES--------- 132 (273)
T ss_dssp T---T---HHHHHHHHHHHHHHT--CCEEEETHHHHHHHHH-HHHHTTCCTTCE-ETTT--------CTTC---------
T ss_pred c---C---chhHHHHHHHHHHCC--CcEEEECcCHHHHHHH-HhCccccccCCc-hhhc--------cccc---------
Confidence 2 1 124566677777644 9999999999999999 999873 1111 0000 0000
Q ss_pred hcCCCCeeeeehhHHHHHHHhCCcccccCCcccceeeecccccCCCCCCcCccCCChhHHHhhccCCceee--ccceeee
Q psy12875 171 EGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHN--NHIWCIT 248 (308)
Q Consensus 171 ~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~--~H~~~v~ 248 (308)
..|.+|+- -| .+... +....++++..... ..++++++.++.. ..+++ .|++.++
T Consensus 133 ---~~~~l~~~-~~---------~~~~~--~~~~~~g~~~v~~~-~~~s~l~~~~~~~--------~~v~~~H~Hsy~v~ 188 (273)
T 2w7t_A 133 ---THQVVRIM-DC---------DRNKM--GANMHLGACDVYIV-EKSSIMAKIYSKS--------NIVVERHRHRYEVN 188 (273)
T ss_dssp ---SCEEEECC-GG---------GBCSS--CBCCEEEEEEEEEC-CTTSHHHHHTTTC--------SEEEEEEEECCEEC
T ss_pred ---CCCceeec-cc---------ccccc--CCcccccceEEEEe-cCCcHHHHHhCCC--------ceEEeecccccccC
Confidence 01111110 00 00000 00001222211100 1244454433322 22344 6789998
Q ss_pred eccccccCC-CCCeEEEEEecCCC--ceEEEEEEecCCCEE-EEeecCCccCccc
Q psy12875 249 RQDMIKYGL-TETWNILTLSKYKS--WEFVSTVEHKEYPIV-GIQFHPEKNAYEW 299 (308)
Q Consensus 249 ~~~~~~~~l-~~~~~via~s~~~~--~~~v~ai~~~~~p~~-GvQFHPE~~~~~~ 299 (308)
++.+. .+ |++++++|+++++. ..+++|++++++|++ |+|||||++.++.
T Consensus 189 ~~~v~--~l~~~g~~v~A~s~d~~~~g~~ieaie~~~~p~~~GvQfHPE~~~~~~ 241 (273)
T 2w7t_A 189 TAYFE--DLRKAGLCISAVTDPTFSSRCRVEAVENPSLRFFLAVQFHPEFISTPM 241 (273)
T ss_dssp GGGHH--HHHHTTCEEEEESCTTCCTTCCEEEEECTTSSSEEEESSCGGGSCBTT
T ss_pred HHHHH--hhccCCcEEEEEcCCcCCCCCeEEEEEcCCCCeEEEEeCCCCcCCCCC
Confidence 65432 26 78999999997720 015899999998865 9999999998764
No 19
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}
Probab=99.87 E-value=1.5e-22 Score=203.76 Aligned_cols=161 Identities=17% Similarity=0.258 Sum_probs=109.5
Q ss_pred HHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechh
Q psy12875 47 ASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLG 126 (308)
Q Consensus 47 ~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G 126 (308)
+.+.+.|+++|+.++++|++.+.+++.. .++|||||+||+.+... .....+ .++..+ .++||||||+|
T Consensus 43 ~liar~lre~Gv~~~ivp~~~~~e~i~~--~~~dGIILsGGp~s~~~-----~~~~~~---~~~i~~--~g~PvLGIC~G 110 (697)
T 2vxo_A 43 KVIDRRVRELFVQSEIFPLETPAFAIKE--QGFRAIIISGGPNSVYA-----EDAPWF---DPAIFT--IGKPVLGICYG 110 (697)
T ss_dssp HHHHHHHHHTTCCEEEEETTCCHHHHHH--HTCSEEEEEECC------------CCCC---CGGGTT--SSCCEEEEEHH
T ss_pred HHHHHHHHHCCCEEEEEECCCCHHHHhh--cCCCEEEECCCCCcccC-----ccchhH---HHHHHh--CCCCEEEECHH
Confidence 3567999999999999999877655543 47999999999864321 100000 112233 34899999999
Q ss_pred hhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCccccee
Q psy12875 127 FELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQV 206 (308)
Q Consensus 127 ~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~~~~~ 206 (308)
||+|+.+ +||++.+... + .+|. ..+
T Consensus 111 ~QlLa~~-lGG~v~~~~~-------------------------------~----------------------e~G~-~~v 135 (697)
T 2vxo_A 111 MQMMNKV-FGGTVHKKSV-------------------------------R----------------------EDGV-FNI 135 (697)
T ss_dssp HHHHHHH-TTCCBCC------------------------------------------------------------C-EEE
T ss_pred HHHHHHH-hCCeEeecCC-------------------------------C----------------------ccce-EEE
Confidence 9999988 8887642100 0 0010 011
Q ss_pred eecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEecCCCEE
Q psy12875 207 NLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEYPIV 286 (308)
Q Consensus 207 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~~~p~~ 286 (308)
.+ ..+++||++++..+. ++++|++.|.. +|++|+++|++++ .++|+++.++++|
T Consensus 136 ~~-------~~~~~Lf~~l~~~~~--------v~~~H~~~V~~-------lp~g~~vlA~s~~----~i~ai~~~~~~i~ 189 (697)
T 2vxo_A 136 SV-------DNTCSLFRGLQKEEV--------VLLTHGDSVDK-------VADGFKVVARSGN----IVAGIANESKKLY 189 (697)
T ss_dssp EE-------CTTSGGGTTCCSEEE--------ECCCSSCCBSS-------CCTTCEEEEEETT----EEEEEEETTTTEE
T ss_pred Ee-------cCCChhhhcCCccCc--------ceeecccceec-------CCCCeEEEEEeCC----ceEEEEeCCCCEE
Confidence 11 135678998876543 48899999863 8999999999843 4999999999999
Q ss_pred EEeecCCccCcccC
Q psy12875 287 GIQFHPEKNAYEWT 300 (308)
Q Consensus 287 GvQFHPE~~~~~~~ 300 (308)
|+|||||+..++.|
T Consensus 190 GvQFHPE~~~t~~g 203 (697)
T 2vxo_A 190 GAQFHPEVGLTENG 203 (697)
T ss_dssp EESSCTTSSSSTTH
T ss_pred EEEecccCCCCccc
Confidence 99999999987665
No 20
>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A*
Probab=99.87 E-value=4.1e-22 Score=199.03 Aligned_cols=171 Identities=14% Similarity=0.121 Sum_probs=115.8
Q ss_pred CCCccchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCc
Q psy12875 39 PNYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTF 118 (308)
Q Consensus 39 ~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~ 118 (308)
+.+++| ..++++++++.|+.+.+++++.+. .+.++||||++||+.+.... ...+...+.++++++.+.+ +
T Consensus 453 D~gdsf-~~~l~~~l~~~G~~v~Vv~~d~~~-----~~~~~DgIIlsGGPg~p~d~--~~p~i~~~~~lI~~a~~~~--i 522 (645)
T 3r75_A 453 DAEDHF-TAMIAQQLSSLGLATEVCGVHDAV-----DLARYDVVVMGPGPGDPSDA--GDPRIARLYAWLRHLIDEG--K 522 (645)
T ss_dssp ESSCTH-HHHHHHHHHHTTCEEEEEETTCCC-----CGGGCSEEEECCCSSCTTCT--TSHHHHHHHHHHHHHHHHT--C
T ss_pred ECCccH-HHHHHHHHHHCCCEEEEEECCCcc-----cccCCCEEEECCCCCChhhh--hhhhHHHHHHHHHHHHHCC--C
Confidence 345566 468999999999999999987642 24679999999987554431 1123445667777777744 9
Q ss_pred cEEEechhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875 119 PVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFR 198 (308)
Q Consensus 119 PvlGIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~ 198 (308)
||||||+|||+|+.+ +||++.+... |..|.
T Consensus 523 PiLGIClG~QlLa~a-lGG~V~~~~~-------------------------------~~~G~------------------ 552 (645)
T 3r75_A 523 PFMAVCLSHQILNAI-LGIPLVRREV-------------------------------PNQGI------------------ 552 (645)
T ss_dssp CEEEETHHHHHHHHH-TTCCEEEEEE-------------------------------EEEEE------------------
T ss_pred CEEEECHHHHHHHHH-hCCEEEcCCC-------------------------------ccccc------------------
Confidence 999999999999999 9998753211 00110
Q ss_pred CCcccceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEE
Q psy12875 199 KSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTV 278 (308)
Q Consensus 199 ~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai 278 (308)
...+.+ .+++++.+++..+. ++++|...+. .+|++++++|+++++. |+++
T Consensus 553 ----~~~i~~--------~~~~l~~~~~~~~~--------v~~~h~~~~~-------~lp~g~~v~A~s~dg~---i~Ai 602 (645)
T 3r75_A 553 ----QVEIDL--------FGQRERVGFYNTYV--------AQTVRDEMDV-------DGVGTVAISRDPRTGE---VHAL 602 (645)
T ss_dssp ----EEEEEE--------TTEEEEEEEEEEEE--------EBCSCSEEEE-------TTTEEEEEEECTTTCB---EEEE
T ss_pred ----ceEEee--------ecCcceecCCCcEE--------EEEehhhccc-------cCCCCeEEEEEcCCCc---EEEE
Confidence 111111 12334444333322 2445655443 2889999999988875 8899
Q ss_pred EecCCCEEEEeecCCccCcccCC
Q psy12875 279 EHKEYPIVGIQFHPEKNAYEWTE 301 (308)
Q Consensus 279 ~~~~~p~~GvQFHPE~~~~~~~~ 301 (308)
++++ +||+|||||++.+++|.
T Consensus 603 ~~~~--~~GVQFHPE~~~t~~G~ 623 (645)
T 3r75_A 603 RGPT--FSSMQFHAESVLTVDGP 623 (645)
T ss_dssp EETT--EEEESSBTTSTTCTTHH
T ss_pred EcCC--EEEEEeCCeecCCcchH
Confidence 9886 79999999999987753
No 21
>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics; 1.90A {Methanocaldococcus jannaschii}
Probab=99.86 E-value=5e-22 Score=169.56 Aligned_cols=154 Identities=16% Similarity=0.263 Sum_probs=97.8
Q ss_pred HHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHH--HHHHHHHHHHHHHcCCCccEEEech
Q psy12875 48 SYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADA--GRQILHLVDKINEEGVTFPVLGVCL 125 (308)
Q Consensus 48 ~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~--~~~~~e~~~~~~~~g~~~PvlGIC~ 125 (308)
++.++|+++|+++++++. ++ .++++||||+|||+.+ .|.+. .+++.+.++ + .++||||||+
T Consensus 14 ~~~~~l~~~G~~~~~~~~---~~----~~~~~dglil~GG~~~-----~~~~~~~~~~~~~~i~---~--~~~PilGIC~ 76 (186)
T 2ywj_A 14 EHEEAIKKAGYEAKKVKR---VE----DLEGIDALIIPGGEST-----AIGKLMKKYGLLEKIK---N--SNLPILGTCA 76 (186)
T ss_dssp HHHHHHHHTTSEEEEECS---GG----GGTTCSEEEECCSCHH-----HHHHHHHHTTHHHHHH---T--CCCCEEEETH
T ss_pred HHHHHHHHCCCEEEEECC---hH----HhccCCEEEECCCCch-----hhhhhhhccCHHHHHH---h--cCCcEEEECH
Confidence 567999999999888763 22 4678999999999621 23322 223445444 3 4599999999
Q ss_pred hhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCcccce
Q psy12875 126 GFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQ 205 (308)
Q Consensus 126 G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~~~~ 205 (308)
|||+|+.+ +||+. +. +.+.++ ++.+..++.. .
T Consensus 77 G~Qll~~~-~gg~~-~~----------lg~~~~-----------------------------------~~~~~~~~~~-~ 108 (186)
T 2ywj_A 77 GMVLLSKG-TGINQ-IL----------LELMDI-----------------------------------TVKRNAYGRQ-V 108 (186)
T ss_dssp HHHHHSSC-CSSCC-CC----------CCCSSE-----------------------------------EEETTTTCSS-S
T ss_pred HHHHHHHH-hCCCc-Cc----------cCCCce-----------------------------------eEEeccCCCc-c
Confidence 99999999 99873 21 111111 1110000000 0
Q ss_pred eeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCC-CCCeEEEEEecCCCceEEEEEEecCCC
Q psy12875 206 VNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGL-TETWNILTLSKYKSWEFVSTVEHKEYP 284 (308)
Q Consensus 206 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l-~~~~~via~s~~~~~~~v~ai~~~~~p 284 (308)
..+ ..+.++.++ .++ .++++|++++.. + |++++++|++ ++ +++|++++ +
T Consensus 109 ~~~--------~~~~~~~~~-~~~--------~~~~~H~~~v~~-------l~~~~~~v~a~s-d~---~~~a~~~~--~ 158 (186)
T 2ywj_A 109 DSF--------EKEIEFKDL-GKV--------YGVFIRAPVVDK-------ILSDDVEVIARD-GD---KIVGVKQG--K 158 (186)
T ss_dssp CCE--------EEEEEETTT-EEE--------EEEESSCCEEEE-------ECCTTCEEEEEE-TT---EEEEEEET--T
T ss_pred cce--------ecccccccC-CcE--------EEEEEecceeee-------cCCCCeEEEEEE-CC---EEEEEeeC--C
Confidence 000 011234433 222 248899999863 7 8999999998 43 48899975 5
Q ss_pred EEEEeecCCccC
Q psy12875 285 IVGIQFHPEKNA 296 (308)
Q Consensus 285 ~~GvQFHPE~~~ 296 (308)
++|+|||||++.
T Consensus 159 ~~gvQfHPE~~~ 170 (186)
T 2ywj_A 159 YMALSFHPELSE 170 (186)
T ss_dssp EEEESSCGGGST
T ss_pred EEEEECCCCcCC
Confidence 999999999875
No 22
>2v4u_A CTP synthase 2; pyrimidine biosynthesis, glutamine amidotransferase, glutaminase domain, 5-OXO-L-norleucine, DON, ligase, phosphoprotein; HET: CYD; 2.3A {Homo sapiens} PDB: 2vkt_A
Probab=99.84 E-value=3.9e-21 Score=175.25 Aligned_cols=193 Identities=16% Similarity=0.190 Sum_probs=112.6
Q ss_pred HHHHHHHHcCC----eEEEEEcCCCh----------hHHHH---hcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHH
Q psy12875 48 SYVKNIEAAGA----RVVPILIGQDR----------EYYAE---ILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDK 110 (308)
Q Consensus 48 ~~~~~l~~aG~----~~~~i~~~~~~----------~~~~~---~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~ 110 (308)
++.++|+++|+ .+.+++++.+. +++++ .+.++||||+|||..+ + . .....+.+++
T Consensus 43 si~~~L~~~G~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dgiil~GG~~~--~---~---~~~~~~~i~~ 114 (289)
T 2v4u_A 43 SVFKALEHSALAINHKLNLMYIDSIDLEKITETEDPVKFHEAWQKLCKADGILVPGGFGI--R---G---TLGKLQAISW 114 (289)
T ss_dssp HHHHHHHHHHHHTTEEEEEEEEEGGGGSHHHHHHCHHHHHHHHHHHHHCSEEEECSCCSS--T---T---HHHHHHHHHH
T ss_pred HHHHHHHHhhhhhCCceEEEEechhhcccccccCChhhhhhHHHHHhhCCEEEecCCCCc--h---h---HHHHHHHHHH
Confidence 77889988764 45666654321 11111 3678999999999632 2 1 1456777888
Q ss_pred HHHcCCCccEEEechhhhHHHHHhcCCccc--cccccccc---c-ccceeeecCCCCcchhhhHhhhcCCCCeeeeehhH
Q psy12875 111 INEEGVTFPVLGVCLGFELILQVSNNDTDF--RKSCKVQQ---V-NLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGF 184 (308)
Q Consensus 111 ~~~~g~~~PvlGIC~G~Qll~~~~~gg~~~--~~~~~~~~---~-~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~ 184 (308)
+.+. ++||||||+|||+|+.+ +||++. ++....+- . .+.+.+.|+....
T Consensus 115 ~~~~--~~PilGIC~G~Q~l~~a-~Gg~v~~~~~~~~~e~~~~~~~~~i~~~~~h~~~---------------------- 169 (289)
T 2v4u_A 115 ARTK--KIPFLGVXLGMQLAVIE-FARNCLNLKDADSTEFRPNAPVPLVIDMPEHNPG---------------------- 169 (289)
T ss_dssp HHHT--TCCEEEETHHHHHHHHH-HHHHHSCCTTEEESTTCTTCSEEEEEECCBCCTT----------------------
T ss_pred HHHc--CCcEEEECccHHHHHHH-HhccccccccCcccccCccccccceecchhhccc----------------------
Confidence 8774 49999999999999999 999873 22110000 0 0001111110000
Q ss_pred HHHHHHhCCcccccCCcccceeee-cccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCC-CCeE
Q psy12875 185 ELILQVSNNDTDFRKSCKVQQVNL-NLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLT-ETWN 262 (308)
Q Consensus 185 Qll~~~~G~~v~~~~~g~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~-~~~~ 262 (308)
+.+....++. .+... ..++.+++.++.+..+ ..++.|++.|+++.+. .+| ++++
T Consensus 170 --------------~~~~~~~~g~~~v~~~--~~~s~l~~~~~~~~~v------~~~H~H~y~vn~~~v~--~l~~~g~~ 225 (289)
T 2v4u_A 170 --------------NLGGTMRLGIRRTVFK--TENSILRKLYGDVPFI------EERHRHRFEVNPNLIK--QFEQNDLS 225 (289)
T ss_dssp --------------CSSCBCEEEEEEEEES--CSCCHHHHHTTSCSEE------EEEEEECEEECGGGSG--GGTTSSEE
T ss_pred --------------ccCCccccceEEEEEe--cCCCHHHHhcCCCceE------EEecccccccCHHHHH--hcccCCeE
Confidence 0000000111 11110 0244454443321111 1245678888876653 278 9999
Q ss_pred EEEEecCCCceEEEEEEecCCCEE-EEeecCCccCccc
Q psy12875 263 ILTLSKYKSWEFVSTVEHKEYPIV-GIQFHPEKNAYEW 299 (308)
Q Consensus 263 via~s~~~~~~~v~ai~~~~~p~~-GvQFHPE~~~~~~ 299 (308)
++|+++|+. +|+|++++++|++ |+|||||+..++.
T Consensus 226 v~A~s~dg~--~ieaie~~~~p~~lGvQfHPE~~~~~~ 261 (289)
T 2v4u_A 226 FVGQDVDGD--RMEIIELANHPYFVGVQFHPEFSSRPM 261 (289)
T ss_dssp EEEEETTSC--SEEEEEESSSSCEEEESSBGGGGCBTT
T ss_pred EEEEcCCCC--eEEEEEcCCCCeEEEEECCCCCCCCCC
Confidence 999998874 3779999988876 9999999987654
No 23
>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima}
Probab=99.84 E-value=1.6e-20 Score=163.20 Aligned_cols=185 Identities=16% Similarity=0.183 Sum_probs=113.3
Q ss_pred CCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCch
Q psy12875 18 TPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGY 97 (308)
Q Consensus 18 ~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~ 97 (308)
.+.|+|+..+... ...++.++|+++|+++.+++... .++++|+||+|||....+.. .+
T Consensus 2 ~~~i~il~~~~~~--------------~~~~~~~~l~~~g~~~~~~~~~~-------~~~~~d~lil~Gg~~~~~~~-~~ 59 (213)
T 3d54_D 2 KPRACVVVYPGSN--------------CDRDAYHALEINGFEPSYVGLDD-------KLDDYELIILPGGFSYGDYL-RP 59 (213)
T ss_dssp CCEEEEECCTTEE--------------EHHHHHHHHHTTTCEEEEECTTC-------CCSSCSEEEECEECGGGGCS-ST
T ss_pred CcEEEEEEcCCCC--------------ccHHHHHHHHHCCCEEEEEecCC-------CcccCCEEEECCCCchhhhh-cc
Confidence 4678888654321 11356899999999998887532 46789999999997322110 11
Q ss_pred hHH--HHHHHHHHHHHHHcCCCccEEEechhhhHHHHHh-cCCccccccccccccccceeeecCCCCcchhhhHhhhcCC
Q psy12875 98 ADA--GRQILHLVDKINEEGVTFPVLGVCLGFELILQVS-NNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVT 174 (308)
Q Consensus 98 ~~~--~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~~-~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~ 174 (308)
... .+.+.++++++.+++ +||+|||+|+|+|+.+. ++|++.+.. .++
T Consensus 60 ~~~~~~~~~~~~l~~~~~~~--~pilgIC~G~qlLa~aGll~g~v~~~~-------------~~~--------------- 109 (213)
T 3d54_D 60 GAVAAREKIAFEIAKAAERG--KLIMGICNGFQILIEMGLLKGALLQNS-------------SGK--------------- 109 (213)
T ss_dssp THHHHTSTTHHHHHHHHHHT--CEEEECHHHHHHHHHHTSSCSEEECCS-------------SSS---------------
T ss_pred ccccccHHHHHHHHHHHHCC--CEEEEECHHHHHHHHcCCCCCCeecCC-------------CCc---------------
Confidence 111 235677788887754 99999999999999872 344331100 000
Q ss_pred CCeeeeehhHHHHHHHhCCcccccCCcccceeeecccccCCCCCCcCccCCChhHHHhhccCCceeecc---ceeeeecc
Q psy12875 175 FPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNH---IWCITRQD 251 (308)
Q Consensus 175 ~PilGiClG~Qll~~~~G~~v~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H---~~~v~~~~ 251 (308)
...|+ ..+.+ . .+++++++.++..... .++.+| ++.+.
T Consensus 110 -~~~g~-----------------------~~v~~----~--~~~~~l~~~~~~~~~~------~~~~~H~~~s~~~~--- 150 (213)
T 3d54_D 110 -FICKW-----------------------VDLIV----E--NNDTPFTNAFEKGEKI------RIPIAHGFGRYVKI--- 150 (213)
T ss_dssp -CBCCE-----------------------EEEEE----C--CCSSTTSTTSCTTCEE------EEECCBSSCEEECS---
T ss_pred -eEeee-----------------------EEEEe----C--CCCCceeeccCCCCEE------EEEeecCceEEEec---
Confidence 00011 11111 0 1357788877642110 124478 55542
Q ss_pred ccccCCCCCeEEEEEecC--CCceEEEEEEecCCCEEEEeecCCccCccc
Q psy12875 252 MIKYGLTETWNILTLSKY--KSWEFVSTVEHKEYPIVGIQFHPEKNAYEW 299 (308)
Q Consensus 252 ~~~~~l~~~~~via~s~~--~~~~~v~ai~~~~~p~~GvQFHPE~~~~~~ 299 (308)
|+++.++|++++ +....++|+++++.+++|+|||||++...|
T Consensus 151 ------~~~~~~~a~~~~~ng~~~~i~a~~~~~~~~~gvQfHPE~~~~~~ 194 (213)
T 3d54_D 151 ------DDVNVVLRYVKDVNGSDERIAGVLNESGNVFGLMPHPERAVEEL 194 (213)
T ss_dssp ------SCCEEEEEESSCSSCCGGGEEEEECSSSCEEEECSCSTTTTSTT
T ss_pred ------CCCcEEEEEcCCCCCCccceeEEEcCCCCEEEEeCCHHHhcCHh
Confidence 367889999865 310138899987778999999999998654
No 24
>1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A 2wjz_B
Probab=99.84 E-value=3.8e-21 Score=166.08 Aligned_cols=159 Identities=21% Similarity=0.314 Sum_probs=97.7
Q ss_pred HHHHHHHHHcC-----CeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHH--HHHHHHHHHHHcCCCcc
Q psy12875 47 ASYVKNIEAAG-----ARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGR--QILHLVDKINEEGVTFP 119 (308)
Q Consensus 47 ~~~~~~l~~aG-----~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~--~~~e~~~~~~~~g~~~P 119 (308)
.++.++|+++| +.+.+++.. + . .++||||+|||+. .. ....+.+ .+.++++++.+++ +|
T Consensus 14 ~s~~~~l~~~G~~~~~~~~~~~~~~---~----~-~~~dglilpG~g~-~~---~~~~~l~~~~~~~~i~~~~~~~--~P 79 (201)
T 1gpw_B 14 MNLYRGVKRASENFEDVSIELVESP---R----N-DLYDLLFIPGVGH-FG---EGMRRLRENDLIDFVRKHVEDE--RY 79 (201)
T ss_dssp HHHHHHHHHHSTTBSSCEEEEECSC---C----S-SCCSEEEECCCSC-SH---HHHHHHHHTTCHHHHHHHHHTT--CE
T ss_pred HHHHHHHHHcCCCCCceEEEEECCC---c----c-cCCCEEEECCCCc-HH---HHHHHHHhhCHHHHHHHHHHcC--Ce
Confidence 46778999999 888877642 1 2 6799999999752 11 1111222 2567788887744 99
Q ss_pred EEEechhhhHHHHHhcC--CccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccc
Q psy12875 120 VLGVCLGFELILQVSNN--DTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDF 197 (308)
Q Consensus 120 vlGIC~G~Qll~~~~~g--g~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~ 197 (308)
|||||+|||+|+.+ +| |+ .+. +.+.+| ++.+
T Consensus 80 ilGIC~G~Qll~~~-~g~~G~-~~~----------l~~~~g-----------------------------------~v~~ 112 (201)
T 1gpw_B 80 VVGVCLGMQLLFEE-SEEAPG-VKG----------LSLIEG-----------------------------------NVVK 112 (201)
T ss_dssp EEEETHHHHTTSSE-ETTEEE-EEC----------CCSSSE-----------------------------------EEEE
T ss_pred EEEEChhHHHHHHh-hccCCC-CCC----------cceeee-----------------------------------EEEE
Confidence 99999999999998 76 33 111 111111 2211
Q ss_pred cCCcccceeeecccccCCCCCCcCccCCC-hhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEE
Q psy12875 198 RKSCKVQQVNLNLKFLPGAKRSSLFSQVP-SKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVS 276 (308)
Q Consensus 198 ~~~g~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ 276 (308)
...++...++++ +++...+ ..+ .++++|++.+.+ + +++++|++++++. .++
T Consensus 113 ~~~~~~~~~g~~----------~l~~~~~~~~~--------~v~~~H~~~v~~-------~--~~~vla~s~~~g~-~~~ 164 (201)
T 1gpw_B 113 LRSRRLPHMGWN----------EVIFKDTFPNG--------YYYFVHTYRAVC-------E--EEHVLGTTEYDGE-IFP 164 (201)
T ss_dssp CCCSSCSEEEEE----------EEEESSSSCCE--------EEEEEESEEEEE-------C--GGGEEEEEEETTE-EEE
T ss_pred cCCCCCCcccce----------eeEeccCCCCC--------eEEEECcceecc-------C--CCEEEEEEccCCc-eEE
Confidence 110011111211 1221111 112 258999999974 3 6789999876221 377
Q ss_pred EEEecCCCEEEEeecCCcc
Q psy12875 277 TVEHKEYPIVGIQFHPEKN 295 (308)
Q Consensus 277 ai~~~~~p~~GvQFHPE~~ 295 (308)
|+++++ +++|+|||||++
T Consensus 165 a~~~~~-~i~gvQfHPE~~ 182 (201)
T 1gpw_B 165 SAVRKG-RILGFQFHPEKS 182 (201)
T ss_dssp EEEEET-TEEEESSCGGGS
T ss_pred EEEECC-CEEEEECCCccc
Confidence 998876 899999999998
No 25
>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1
Probab=99.84 E-value=2.3e-21 Score=169.87 Aligned_cols=175 Identities=19% Similarity=0.277 Sum_probs=109.8
Q ss_pred CCCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCC
Q psy12875 16 TDTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPN 95 (308)
Q Consensus 16 ~~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~ 95 (308)
+.++.|+|+.... +|. ++.++|+++|+++++++.. + .++++||||+|||...
T Consensus 21 ~~~~~I~il~~~~--------------~~~--~~~~~l~~~G~~~~~~~~~---~----~l~~~Dglil~GG~~~----- 72 (219)
T 1q7r_A 21 QSNMKIGVLGLQG--------------AVR--EHVRAIEACGAEAVIVKKS---E----QLEGLDGLVLPGGEST----- 72 (219)
T ss_dssp CCCCEEEEESCGG--------------GCH--HHHHHHHHTTCEEEEECSG---G----GGTTCSEEEECCCCHH-----
T ss_pred CCCCEEEEEeCCC--------------CcH--HHHHHHHHCCCEEEEECCH---H----HHhhCCEEEECCCChH-----
Confidence 4468999994421 222 3568999999998887642 2 3678999999999621
Q ss_pred chhHHH--HHHHHHHHHHHHcCCCccEEEechhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcC
Q psy12875 96 GYADAG--RQILHLVDKINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGV 173 (308)
Q Consensus 96 ~~~~~~--~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~ 173 (308)
.+.... ..+.++++++.+++ +||||||+|||+|+.+ +||+..+. +.+.|+.....
T Consensus 73 ~~~~~~~~~~~~~~i~~~~~~~--~PilGIC~G~QlL~~~-~gg~~~~~----------lg~~~~~~~~~---------- 129 (219)
T 1q7r_A 73 TMRRLIDRYGLMEPLKQFAAAG--KPMFGTCAGLILLAKR-IVGYDEPH----------LGLMDITVERN---------- 129 (219)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTT--CCEEEETTHHHHHEEE-EESSCCCC----------CCCEEEEEECH----------
T ss_pred HHHHHhhhhHHHHHHHHHHHcC--CeEEEECHHHHHHHHH-hCCCCcCC----------cCccceEEEec----------
Confidence 132222 23467788888754 9999999999999999 88875321 22222110000
Q ss_pred CCCeeeeehhHHHHHHHhCCcccccCCcccceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeecccc
Q psy12875 174 TFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMI 253 (308)
Q Consensus 174 ~~PilGiClG~Qll~~~~G~~v~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~ 253 (308)
..|..+. .+ ..+..+.+++.++. ++++|++.+..
T Consensus 130 ----------------~~g~~~~----------~~--------~~~~~~~g~g~~~~--------~~~~h~~~v~~---- 163 (219)
T 1q7r_A 130 ----------------SFGRQRE----------SF--------EAELSIKGVGDGFV--------GVFIRAPHIVE---- 163 (219)
T ss_dssp ----------------HHHCCCC----------CE--------EEEEEETTTEEEEE--------EEESSCCEEEE----
T ss_pred ----------------CCCcccc----------ce--------ecCcccCCCCCceE--------EEEEecceeec----
Confidence 0000000 00 00111233322332 37789988864
Q ss_pred ccCCCCCeEEEEEecCCCceEEEEEEecCCCEEEEeecCCccC
Q psy12875 254 KYGLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNA 296 (308)
Q Consensus 254 ~~~l~~~~~via~s~~~~~~~v~ai~~~~~p~~GvQFHPE~~~ 296 (308)
+|++++++|++ ++ .++|++++ +++|+|||||+..
T Consensus 164 ---l~~~~~v~a~s-dg---~~ea~~~~--~i~GvQfHPE~~~ 197 (219)
T 1q7r_A 164 ---AGDGVDVLATY-ND---RIVAARQG--QFLGCSFHPELTD 197 (219)
T ss_dssp ---ECTTCEEEEEE-TT---EEEEEEET--TEEEESSCGGGSS
T ss_pred ---cCCCcEEEEEc-CC---EEEEEEEC--CEEEEEECcccCC
Confidence 78899999998 54 47899985 6999999999974
No 26
>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1
Probab=99.83 E-value=7.5e-21 Score=164.21 Aligned_cols=74 Identities=28% Similarity=0.452 Sum_probs=53.6
Q ss_pred HHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHH--HHHHHHHHHHHHcCCCccEEEec
Q psy12875 47 ASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAG--RQILHLVDKINEEGVTFPVLGVC 124 (308)
Q Consensus 47 ~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~--~~~~e~~~~~~~~g~~~PvlGIC 124 (308)
.++.++|+++|+++++++.. + .++++||||+|||+. ..+ ...+. +.+.++++++.+++ +||||||
T Consensus 16 ~~~~~~l~~~G~~~~~~~~~---~----~l~~~d~lil~G~g~-~~~---~~~~l~~~~~~~~i~~~~~~~--~PilGIC 82 (200)
T 1ka9_H 16 RSAAKALEAAGFSVAVAQDP---K----AHEEADLLVLPGQGH-FGQ---VMRAFQESGFVERVRRHLERG--LPFLGIC 82 (200)
T ss_dssp HHHHHHHHHTTCEEEEESST---T----SCSSCSEEEECCCSC-HHH---HHHTTSSSCTHHHHHHHHHTT--CCEEECT
T ss_pred HHHHHHHHHCCCeEEEecCh---H----HcccCCEEEECCCCc-HHH---HHHHHHhcCHHHHHHHHHHcC--CeEEEEc
Confidence 35789999999999887532 1 467899999999652 111 11111 13567778877744 9999999
Q ss_pred hhhhHHHHH
Q psy12875 125 LGFELILQV 133 (308)
Q Consensus 125 ~G~Qll~~~ 133 (308)
+|||+|+.+
T Consensus 83 ~G~Qll~~~ 91 (200)
T 1ka9_H 83 VGMQVLYEG 91 (200)
T ss_dssp HHHHTTSSE
T ss_pred HHHHHHHHh
Confidence 999999998
No 27
>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*
Probab=99.82 E-value=1.8e-20 Score=161.25 Aligned_cols=160 Identities=18% Similarity=0.272 Sum_probs=98.2
Q ss_pred HHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHH--HHHHHHHHHHHHcCCCccEEEech
Q psy12875 48 SYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAG--RQILHLVDKINEEGVTFPVLGVCL 125 (308)
Q Consensus 48 ~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~--~~~~e~~~~~~~~g~~~PvlGIC~ 125 (308)
++.++|+++|++++.++. .+ .++++|||++|||... .+.+.. ..+.+.++++.+++ +|++|||+
T Consensus 15 ~~~~~l~~~g~~~~~~~~---~~----~l~~~d~iil~GG~~~-----~~~~~~~~~~~~~~i~~~~~~~--~pilgIC~ 80 (196)
T 2nv0_A 15 EHIHAIEACGAAGLVVKR---PE----QLNEVDGLILPGGEST-----TMRRLIDTYQFMEPLREFAAQG--KPMFGTCA 80 (196)
T ss_dssp HHHHHHHHTTCEEEEECS---GG----GGGGCSEEEECCSCHH-----HHHHHHHHTTCHHHHHHHHHTT--CCEEEETH
T ss_pred HHHHHHHHCCCEEEEeCC---hH----HHhhCCEEEECCCChh-----hHHHHhhhHHHHHHHHHHHHCC--CcEEEECH
Confidence 346899999999887753 22 3568999999999621 132222 23467778887754 99999999
Q ss_pred hhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCcccce
Q psy12875 126 GFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQ 205 (308)
Q Consensus 126 G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~~~~ 205 (308)
|||+|+.+ +||+..+. +++.|+. +.+...+....
T Consensus 81 G~q~l~~~-~gg~~~~~----------lg~~~~~-----------------------------------~~~~~~g~~~~ 114 (196)
T 2nv0_A 81 GLIILAKE-IAGSDNPH----------LGLLNVV-----------------------------------VERNSFGRQVD 114 (196)
T ss_dssp HHHHHSBC-CC----CC----------CCCSCEE-----------------------------------EECCCSCTTTS
T ss_pred HHHHHHHH-hcCCCCCc----------ccCCcee-----------------------------------EeccCCCcccc
Confidence 99999999 99875321 2222211 11100000000
Q ss_pred eeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEecCCCE
Q psy12875 206 VNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEYPI 285 (308)
Q Consensus 206 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~~~p~ 285 (308)
.+ ..+..+.+++.++. ++++|++.+.. +|++++++|++ ++ .+++++++ ++
T Consensus 115 -~~--------~~~~~~~~~g~~~~--------~~~~h~~~v~~-------~~~~~~v~a~~-d~---~~~a~~~~--~~ 164 (196)
T 2nv0_A 115 -SF--------EADLTIKGLDEPFT--------GVFIRAPHILE-------AGENVEVLSEH-NG---RIVAAKQG--QF 164 (196)
T ss_dssp -EE--------EEEECCTTCSSCEE--------EEEESCCEEEE-------ECTTCEEEEEE-TT---EEEEEEET--TE
T ss_pred -cc--------cCCcccccCCCceE--------EEEEecceecc-------cCCCcEEEEEE-CC---EEEEEEEC--CE
Confidence 00 01112333333332 47789988863 78899999998 43 37799875 69
Q ss_pred EEEeecCCccCc
Q psy12875 286 VGIQFHPEKNAY 297 (308)
Q Consensus 286 ~GvQFHPE~~~~ 297 (308)
+|+|||||++..
T Consensus 165 ~gvQfHPE~~~~ 176 (196)
T 2nv0_A 165 LGCSFHPELTED 176 (196)
T ss_dssp EEESSCTTSSSC
T ss_pred EEEEECCccCCc
Confidence 999999998754
No 28
>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima}
Probab=99.81 E-value=3.1e-20 Score=161.36 Aligned_cols=178 Identities=16% Similarity=0.197 Sum_probs=105.6
Q ss_pred ccCCCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCC
Q psy12875 14 TSTDTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDH 93 (308)
Q Consensus 14 ~~~~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~ 93 (308)
...++..|+|+.. . . .| .++.++|+++|+++++++. .+ .+.++|||++|||..
T Consensus 16 ~~~~~~~I~ii~~---~---------~--~~--~~~~~~l~~~g~~~~~~~~---~~----~l~~~d~iil~GG~~---- 68 (208)
T 2iss_D 16 PRGSHMKIGVLGV---Q---------G--DV--REHVEALHKLGVETLIVKL---PE----QLDMVDGLILPGGES---- 68 (208)
T ss_dssp ----CCEEEEECS---S---------S--CH--HHHHHHHHHTTCEEEEECS---GG----GGGGCSEEEECSSCH----
T ss_pred CCCCCcEEEEEEC---C---------C--ch--HHHHHHHHHCCCEEEEeCC---hH----HHhhCCEEEECCCcH----
Confidence 4445678999832 1 0 12 3567889999999887753 22 256899999999841
Q ss_pred CCchhHHH--HHHHHHHHHHHHcCCCccEEEechhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhh
Q psy12875 94 PNGYADAG--RQILHLVDKINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEE 171 (308)
Q Consensus 94 ~~~~~~~~--~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~ 171 (308)
. .+.+.. +.+.+.++++.+++ +||||||+|||+|+.+ +||+..+ .+++.|+.
T Consensus 69 ~-~~~~~~~~~~~~~~i~~~~~~g--~PilGIC~G~QlL~~~-~gg~~~~----------~lg~~~~~------------ 122 (208)
T 2iss_D 69 T-TMIRILKEMDMDEKLVERINNG--LPVFATCAGVILLAKR-IKNYSQE----------KLGVLDIT------------ 122 (208)
T ss_dssp H-HHHHHHHHTTCHHHHHHHHHTT--CCEEEETHHHHHHEEE-EC---CC----------CCCCEEEE------------
T ss_pred H-HHHhhhhhhhHHHHHHHHHHCC--CeEEEECHHHHHHHHH-cCCCCCC----------CccccceE------------
Confidence 1 233221 23567778887744 9999999999999999 8886421 13333221
Q ss_pred cCCCCeeeeehhHHHHHHHhCCcccccCCcccceeeecccccCCCCCCcCccCCC-hhHHHhhccCCceeeccceeeeec
Q psy12875 172 GVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQVP-SKYIKKFYQKPLTHNNHIWCITRQ 250 (308)
Q Consensus 172 ~~~~PilGiClG~Qll~~~~G~~v~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~v~~~H~~~v~~~ 250 (308)
+.+.+.+.... .. .....+.+++ .++ .++++|++.+..
T Consensus 123 -----------------------v~~~~~g~~~~-~~--------~~~~~~~~~~~~~~--------~~~~~h~~~v~~- 161 (208)
T 2iss_D 123 -----------------------VERNAYGRQVE-SF--------ETFVEIPAVGKDPF--------RAIFIRAPRIVE- 161 (208)
T ss_dssp -----------------------EETTTTCSGGG-CE--------EEEECCGGGCSSCE--------EEEESSCCEEEE-
T ss_pred -----------------------EEecCCCcccc-cc--------cCCcccccCCCCce--------EEEEEeCccccc-
Confidence 11110000000 00 0011222222 122 247789888764
Q ss_pred cccccCCCCCeEEEEEecCCCceEEEEEEecCCCEEEEeecCCccCc
Q psy12875 251 DMIKYGLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNAY 297 (308)
Q Consensus 251 ~~~~~~l~~~~~via~s~~~~~~~v~ai~~~~~p~~GvQFHPE~~~~ 297 (308)
+|++++++|++ ++ .+++++.+ +++|+|||||++..
T Consensus 162 ------~~~~~~v~a~~-d~---~~~a~~~~--~i~GvQfHPE~~~~ 196 (208)
T 2iss_D 162 ------TGKNVEILATY-DY---DPVLVKEG--NILACTFHPELTDD 196 (208)
T ss_dssp ------ECSSCEEEEEE-TT---EEEEEEET--TEEEESSCGGGSSC
T ss_pred ------CCCCcEEEEEE-CC---EEEEEEEC--CEEEEEeCCCcCCc
Confidence 67889999998 43 48899975 59999999999764
No 29
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}
Probab=99.81 E-value=2e-20 Score=180.02 Aligned_cols=196 Identities=18% Similarity=0.230 Sum_probs=113.9
Q ss_pred CccchHHHHHHHHHHc----CCeEEEEEcCCChhH---H--HHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHH
Q psy12875 41 YTSYIAASYVKNIEAA----GARVVPILIGQDREY---Y--AEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKI 111 (308)
Q Consensus 41 ~~~~i~~~~~~~l~~a----G~~~~~i~~~~~~~~---~--~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~ 111 (308)
.++|. |+.++|+.+ +..+.+.++++..-+ . .+.++.+|||++|||..+ + ......+.++.+
T Consensus 306 ~DaY~--Sv~eAL~hag~~~~~~V~I~wIds~~l~~~~~~~~~~L~~~DgIIlpGG~G~--~------~~~g~i~~ir~a 375 (535)
T 3nva_A 306 KDSYI--SIKEAIYHASAYIGVRPKLIWIESTDLESDTKNLNEILGNVNGIIVLPGFGS--R------GAEGKIKAIKYA 375 (535)
T ss_dssp GGGGH--HHHHHHHHHHHHTTCEEEEEEEEGGGGCCSSSCCTTTTTSCSEEEECCCCSS--T------THHHHHHHHHHH
T ss_pred chhHH--HHHHHHHHHHHHcCCCeEEEEecchhccccccchhhhccCCCEEEECCCCCC--c------cHHHHHHHHHHH
Confidence 45664 667777655 467887776543210 0 236789999999999632 1 123566777777
Q ss_pred HHcCCCccEEEechhhhHHHHHhcCCccc--cccccccc----cccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHH
Q psy12875 112 NEEGVTFPVLGVCLGFELILQVSNNDTDF--RKSCKVQQ----VNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFE 185 (308)
Q Consensus 112 ~~~g~~~PvlGIC~G~Qll~~~~~gg~~~--~~~~~~~~----~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Q 185 (308)
.+++ +|+||||+|||+|+.+ +||++. ++....+. ..+.+.+.|....
T Consensus 376 ~~~~--~PiLGIClG~Qll~va-~Gg~v~g~qda~s~Ef~~~~~~pvI~~m~eq~~------------------------ 428 (535)
T 3nva_A 376 REHN--IPFLGICFGFQLSIVE-FARDVLGLSEANSTEINPNTKDPVITLLDEQKN------------------------ 428 (535)
T ss_dssp HHHT--CCEEEETHHHHHHHHH-HHHTTTCCTTCEETTTCTTCSCEEEECBCSSSC------------------------
T ss_pred HHcC--CcEEEECcchhHHHHH-hhccccCccCCcccccCCCCCCCeeecchhccc------------------------
Confidence 7754 9999999999999999 999873 32211100 0111222221100
Q ss_pred HHHHHhCCcccccCCccccee-eecccccCCCCCCcCccCCChhHHHhhccCCc-eeeccceeeeeccccccCCCCCeEE
Q psy12875 186 LILQVSNNDTDFRKSCKVQQV-NLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPL-THNNHIWCITRQDMIKYGLTETWNI 263 (308)
Q Consensus 186 ll~~~~G~~v~~~~~g~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-v~~~H~~~v~~~~~~~~~l~~~~~v 263 (308)
+.. -|..... .+.+.+ .+++.+.+ .++.... ..+.|+|.|++...... -+++|++
T Consensus 429 ---------~~~--~ggtmrlg~h~v~l---~~gS~L~~--------iyG~~~I~erHrHryeVNs~h~q~l-~~~GL~v 485 (535)
T 3nva_A 429 ---------VTQ--LGGTMRLGAQKIIL---KEGTIAYQ--------LYGKKVVYERHRHRYEVNPKYVDIL-EDAGLVV 485 (535)
T ss_dssp ---------BCS--SCCCCEEEEEEEEE---CTTSHHHH--------HHTSSEEEEEEEECCEECHHHHHHH-HHTTCEE
T ss_pred ---------ccc--cCCccccCceEEEE---cCCCcHHH--------HhCCCeeeecccccceechHHHhhc-ccCCeEE
Confidence 000 0000000 111111 12343333 2222211 24567888865322111 2689999
Q ss_pred EEEecCCCceEEEEEEecCCC-EEEEeecCCccCccc
Q psy12875 264 LTLSKYKSWEFVSTVEHKEYP-IVGIQFHPEKNAYEW 299 (308)
Q Consensus 264 ia~s~~~~~~~v~ai~~~~~p-~~GvQFHPE~~~~~~ 299 (308)
+|+++|+. |+|+|++++| ++|+|||||+..++.
T Consensus 486 sA~s~DG~---IEAIE~~~~pf~vGVQfHPE~~~~p~ 519 (535)
T 3nva_A 486 SGISENGL---VEIIELPSNKFFVATQAHPEFKSRPT 519 (535)
T ss_dssp EEECTTCC---EEEEECTTSSCEEEESSCGGGGCCSS
T ss_pred EEEeCCCC---EEEEEeCCCCcEEEEEeCCEecCCCC
Confidence 99998875 8899999999 589999999987754
No 30
>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A
Probab=99.81 E-value=2.9e-20 Score=181.59 Aligned_cols=221 Identities=17% Similarity=0.208 Sum_probs=117.9
Q ss_pred CCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCCh---hHHHHhcCCCCEEEEcCCCCCCCC
Q psy12875 17 DTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDR---EYYAEILTQINGVVIPGGGTGFDH 93 (308)
Q Consensus 17 ~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~---~~~~~~l~~~dGlilpGG~~~~~~ 93 (308)
.++.|++...-.. ..+.+.++. .++..+..+.|+.+.+++++++. +..++.++++|||++|||.. ++
T Consensus 299 ~~v~I~ivgkyv~-------l~D~y~Sv~-~aL~~~g~~~g~~v~I~~~d~~~~~~~~~~~~L~~~DGIILpGGfG--d~ 368 (550)
T 1vco_A 299 RTVKIAIAGKYVK-------MPDAYLSLL-EALRHAGIKNRARVEVKWVDAESLEAADLEEAFRDVSGILVPGGFG--VR 368 (550)
T ss_dssp EEEEEEEEESCC----------CTTHHHH-HHHHHHHHHTTEEEEEEEEEGGGC--CCHHHHTTTCSCEEECCCCS--ST
T ss_pred CceEEcccCCeEE-------EEecHHHHH-HHHHHHHHHcCCeEEEEEeCccccccchHHHHHhcCCEEEECCCCC--Cc
Confidence 3577886544211 123333432 34445555567788888776532 22445678999999999852 22
Q ss_pred CCchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHHhcCCcccccc-ccccccccceeeecCCCCcchhhhHhhhc
Q psy12875 94 PNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQVSNNDTDFRKS-CKVQQVNLNLKFLPGAKRSSLFSQINEEG 172 (308)
Q Consensus 94 ~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~~~gg~~~~~~-~~~~~~~~~l~~~pg~~~~~~~~~i~~~~ 172 (308)
. ....++.++.+.+. ++|+||||+|||+|+.+ +||++.... ..... +.++...|.. ..+. .+
T Consensus 369 ~------~~g~i~~ir~a~e~--~iPiLGICLGmQlL~~a-~Gg~v~~l~~~~s~E------~~~~~~hpvi-~~~~-~q 431 (550)
T 1vco_A 369 G------IEGKVRAAQYARER--KIPYLGICLGLQIAVIE-FARNVAGLKGANSTE------FDPHTPHPVI-DLMP-EQ 431 (550)
T ss_dssp T------HHHHHHHHHHHHHT--TCCEEEETHHHHHHHHH-HHHHTSCCTTCEETT------TCTTCSCEEE-EESC-GG
T ss_pred c------hhhhHHHHHHHHHC--CCcEEEECcCHHHHHHH-hCcccccCCcccccc------ccCCCCCCeE-Eecc-cc
Confidence 1 12455667777764 49999999999999999 888764211 00000 0011111100 0000 00
Q ss_pred CCCCeeeeehhHHHHHHHhCCcccccCCcccceeeecccccCCCCCCcCccCCChhHHHhhccCCc-eeeccceeeeecc
Q psy12875 173 VTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPL-THNNHIWCITRQD 251 (308)
Q Consensus 173 ~~~PilGiClG~Qll~~~~G~~v~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-v~~~H~~~v~~~~ 251 (308)
.++|.+ +.....+++.... .+++ + +...+..... ..+.|.|.|+...
T Consensus 432 ~~i~~~----------------------ggtmrlG~~~v~i--~~~s-~-------l~~iy~~~~v~e~h~H~Y~Vns~~ 479 (550)
T 1vco_A 432 LEVEGL----------------------GGTMRLGDWPMRI--KPGT-L-------LHRLYGKEEVLERHRHRYEVNPLY 479 (550)
T ss_dssp GCC-------------------------CCCCEEEEEEEEE--CTTS-H-------HHHHHCCSEEEEEEEESEEECHHH
T ss_pred cccccc----------------------CCcccccceEEEE--ccCc-h-------hhHhcCCceeeeeccceEEEchHH
Confidence 001100 0000011110000 0111 1 1111222111 3678888886543
Q ss_pred ccccCCC-CCeEEEEEecCC----CceEEEEEEecCCCEE-EEeecCCccCccc
Q psy12875 252 MIKYGLT-ETWNILTLSKYK----SWEFVSTVEHKEYPIV-GIQFHPEKNAYEW 299 (308)
Q Consensus 252 ~~~~~l~-~~~~via~s~~~----~~~~v~ai~~~~~p~~-GvQFHPE~~~~~~ 299 (308)
.. .++ ++++++|+++++ +. +|++++++++|+| |+|||||+..++.
T Consensus 480 ~~--~l~~~gl~v~a~s~dG~g~~~~-~VeaIe~~~~p~fvGVQFHPE~~~~p~ 530 (550)
T 1vco_A 480 VD--GLERAGLVVSATTPGMRGRGAG-LVEAIELKDHPFFLGLQSHPEFKSRPM 530 (550)
T ss_dssp HH--HHHHHTEEEEEECCCBTTBSTT-CEEEEEETTSSSEEEESSCGGGGCBTT
T ss_pred hh--ccccCCeEEEEEeCCCCccCCC-cEEEEEeCCCCEEEEEEeCCccCCCCC
Confidence 21 144 689999999774 21 5899999999988 9999999998764
No 31
>2abw_A PDX2 protein, glutaminase; PLP-synthase, vitamin B6, malaria, transferase; HET: PG4; 1.62A {Plasmodium falciparum} SCOP: c.23.16.1 PDB: 4ads_G
Probab=99.80 E-value=3.8e-20 Score=162.87 Aligned_cols=92 Identities=16% Similarity=0.282 Sum_probs=66.6
Q ss_pred CCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHc---CCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCC
Q psy12875 17 DTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAA---GARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDH 93 (308)
Q Consensus 17 ~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~a---G~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~ 93 (308)
.+|+|||+.... . + .+|.++|+++ |+++++++. .+ .+.++||||||||...
T Consensus 2 ~~~~I~Il~~~~-~-------------~--~~~~~~l~~~~~~G~~~~~~~~---~~----~l~~~dglil~GG~~~--- 55 (227)
T 2abw_A 2 SEITIGVLSLQG-D-------------F--EPHINHFIKLQIPSLNIIQVRN---VH----DLGLCDGLVIPGGEST--- 55 (227)
T ss_dssp CCEEEEEECTTS-C-------------C--HHHHHHHHTTCCTTEEEEEECS---HH----HHHTCSEEEECCSCHH---
T ss_pred CCcEEEEEeCCC-C-------------c--HHHHHHHHHhccCCeEEEEEcC---cc----ccccCCEEEECCCcHH---
Confidence 468999997541 1 1 2578999999 988877752 22 3567999999998621
Q ss_pred CCchhHH--H--HHHHHHHHHHHHc-CCCccEEEechhhhHHHHHhcCCcc
Q psy12875 94 PNGYADA--G--RQILHLVDKINEE-GVTFPVLGVCLGFELILQVSNNDTD 139 (308)
Q Consensus 94 ~~~~~~~--~--~~~~e~~~~~~~~-g~~~PvlGIC~G~Qll~~~~~gg~~ 139 (308)
.+... . ..+.+.++++.++ + +||||||+|||+|+.+ +||+.
T Consensus 56 --~~~~~~~~d~~~~~~~i~~~~~~~g--~PilGIC~G~QlL~~~-~gg~~ 101 (227)
T 2abw_A 56 --TVRRCCAYENDTLYNALVHFIHVLK--KPIWGTCAGCILLSKN-VENIK 101 (227)
T ss_dssp --HHHHHTTHHHHHHHHHHHHHHHTSC--CCEEEETHHHHHTEEE-EECCC
T ss_pred --HHHHHHHHhHHHHHHHHHHHHHhcC--CEEEEECHHHHHHHHH-hcCCc
Confidence 12222 1 3457778888885 5 9999999999999999 88864
No 32
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A
Probab=99.80 E-value=6e-20 Score=181.28 Aligned_cols=194 Identities=21% Similarity=0.296 Sum_probs=115.0
Q ss_pred CCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCch
Q psy12875 18 TPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGY 97 (308)
Q Consensus 18 ~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~ 97 (308)
.|.|+|+..... +. .++.++|+++|+.+++++.. +. ..++.+||||||||+ +..+ .
T Consensus 4 m~~I~Iid~~~g--------------~~-~~~~~~l~~~G~~~~vv~~~---~~--~~l~~~DglILpGgG-~~~~---~ 59 (555)
T 1jvn_A 4 MPVVHVIDVESG--------------NL-QSLTNAIEHLGYEVQLVKSP---KD--FNISGTSRLILPGVG-NYGH---F 59 (555)
T ss_dssp SCEEEEECCSCS--------------CC-HHHHHHHHHTTCEEEEESSG---GG--CCSTTCSCEEEEECS-CHHH---H
T ss_pred CCEEEEEECCCC--------------CH-HHHHHHHHHCCCEEEEECCc---cc--cccccCCEEEECCCC-chHh---H
Confidence 489999953211 11 36789999999999887632 11 236789999999976 2211 1
Q ss_pred hHHHH--HHHHHHHHHHHcCCCccEEEechhhhHHHHHhc--CCccccccccccccccceeeecCCCCcchhhhHhhhcC
Q psy12875 98 ADAGR--QILHLVDKINEEGVTFPVLGVCLGFELILQVSN--NDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGV 173 (308)
Q Consensus 98 ~~~~~--~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~~~--gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~ 173 (308)
.+..+ .+.+.++++.+++ +||||||+|||+|+.+ + ||. ++. +.+.+|..... .....
T Consensus 60 ~~~l~~~~~~~~i~~~~~~g--~PiLGIC~G~QlL~~a-~~egg~-~~~----------Lg~lgg~v~~~-----~~~~~ 120 (555)
T 1jvn_A 60 VDNLFNRGFEKPIREYIESG--KPIMGIXVGLQALFAG-SVESPK-STG----------LNYIDFKLSRF-----DDSEK 120 (555)
T ss_dssp HHHHHHTTCHHHHHHHHHTT--CCEEEEEHHHHTTEEE-ETTBTT-CCC----------CCSEEEEEEEC-----CTTTS
T ss_pred hhhhhhccHHHHHHHHHHcC--CcEEEEchhhhhhhhh-hhcCCC-ccc----------cCCCCcEEEEC-----CcCCC
Confidence 12222 3567788887744 9999999999999998 5 222 211 22211111100 00001
Q ss_pred CCCeeeeehhHHHHHHHhCCcccccCCcccceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeecccc
Q psy12875 174 TFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMI 253 (308)
Q Consensus 174 ~~PilGiClG~Qll~~~~G~~v~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~ 253 (308)
+.|.+|+ +... .. +++|++++..+. ++++|++.+......
T Consensus 121 ~~~~~G~----------------------------~~v~---~~-~~L~~~l~~~~~--------~~~vHS~~~~~i~~~ 160 (555)
T 1jvn_A 121 PVPEIGW----------------------------NSCI---PS-ENLFFGLDPYKR--------YYFVHSFAAILNSEK 160 (555)
T ss_dssp CSSEEEE----------------------------ECCC---CC-TTCCTTCCTTSC--------EEEEESEECBCCHHH
T ss_pred CCccccc----------------------------eEEE---Ec-CHHHhhCCCCce--------EEEEEEEEEEecccc
Confidence 2233333 2111 12 678887765432 377888887542100
Q ss_pred ccCCCCCeEEEEEecCCCceEEEEEEecCCCEEEEeecCCccC
Q psy12875 254 KYGLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNA 296 (308)
Q Consensus 254 ~~~l~~~~~via~s~~~~~~~v~ai~~~~~p~~GvQFHPE~~~ 296 (308)
...+|+++.++|+++.+...++++++.. ++||+|||||++.
T Consensus 161 ~~~L~~g~~vlA~s~~~~D~~i~ai~~~--~i~GvQFHPE~s~ 201 (555)
T 1jvn_A 161 KKNLENDGWKIAKAKYGSEEFIAAVNKN--NIFATQFHPEKSG 201 (555)
T ss_dssp HHHHHHTTCEEEEEEETTEEEEEEEEET--TEEEESSBGGGSH
T ss_pred cccCCCCCEEEEEEcCCCCCeEEEEEeC--CEEEEEeCcEecC
Confidence 0002567889999875422368999953 7999999999873
No 33
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*
Probab=99.78 E-value=7.2e-20 Score=178.61 Aligned_cols=203 Identities=18% Similarity=0.250 Sum_probs=108.3
Q ss_pred HHHHHHHHHcCC----eEEEEEcCCChhHHH----HhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCc
Q psy12875 47 ASYVKNIEAAGA----RVVPILIGQDREYYA----EILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTF 118 (308)
Q Consensus 47 ~~~~~~l~~aG~----~~~~i~~~~~~~~~~----~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~ 118 (308)
.|+.++|+.+|+ .+.+++++. +++. +.+.++|||++|||+.+ +. .....+.++++.+. ++
T Consensus 306 ~Si~~aL~~~G~~~~~~V~i~~~d~--e~i~~~~~~~l~~~DGIilsGGpg~--~~------~~g~~~~i~~a~~~--~~ 373 (545)
T 1s1m_A 306 KSVIEALKHGGLKNRVSVNIKLIDS--QDVETRGVEILKGLDAILVPGGFGY--RG------VEGMITTARFAREN--NI 373 (545)
T ss_dssp HHHHHHHHHHHHHHTEEEEEEEEEH--HHHHHHCTTTTTTCSEEEECCCCSS--TT------HHHHHHHHHHHHHT--TC
T ss_pred HHHHHHHHHhCcccCCeEEEccCCH--HHhhhhhhhhhhcCCEEEECCCCCC--cc------chhhHHHHHHHHHC--CC
Confidence 467778877764 556666542 2332 34678999999999632 21 13456677777764 49
Q ss_pred cEEEechhhhHHHHHhcCCccccccc-cccccccceeeecCCCCcchhhhHhh---hcCCCCeeeeehhHHHHHHHhCCc
Q psy12875 119 PVLGVCLGFELILQVSNNDTDFRKSC-KVQQVNLNLKFLPGAKRSSLFSQINE---EGVTFPVLGVCLGFELILQVSNND 194 (308)
Q Consensus 119 PvlGIC~G~Qll~~~~~gg~~~~~~~-~~~~~~~~l~~~pg~~~~~~~~~i~~---~~~~~PilGiClG~Qll~~~~G~~ 194 (308)
|+||||+|||+|+.+ +||++..... .... +.++...|.. ..+.. ....++ + .
T Consensus 374 PiLGIClG~Qll~va-~Gg~v~~l~~a~s~E------~~~~~~hpvi-~l~~~w~~~~g~~~--~--------------q 429 (545)
T 1s1m_A 374 PYLGICLGMQVALID-YARHVANMENANSTE------FVPDCKYPVV-ALITEWRDENGNVE--V--------------R 429 (545)
T ss_dssp CEEEETHHHHHHHHH-HHHHHHCCTTCEETT------TCSSCSCEEE-ECTTTCCCTTSCCC------------------
T ss_pred cEEEECChHHHHHHH-hCCceecCCCCcccc------cCCCCCCceE-Eeeccccccccccc--c--------------c
Confidence 999999999999999 9988742110 0000 0011111100 00000 000000 0 0
Q ss_pred ccccCCcccceeeecccccCCCCCCcCccCCChhHHHhhccCC-ceeeccceeeeeccccccCC-CCCeEEEEEecCCCc
Q psy12875 195 TDFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKP-LTHNNHIWCITRQDMIKYGL-TETWNILTLSKYKSW 272 (308)
Q Consensus 195 v~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~v~~~H~~~v~~~~~~~~~l-~~~~~via~s~~~~~ 272 (308)
......|.....++..... .+++.+.+ .+.... ...+.|+|.|+...... + +++++++|+++++.
T Consensus 430 ~~~~~~ggtmrlG~~~v~l--~~~s~l~~--------iyg~~~v~e~h~Hry~VNs~~~~~--l~~~gl~v~a~s~dg~- 496 (545)
T 1s1m_A 430 SEKSDLGGTMRLGAQQCQL--VDDSLVRQ--------LYNAPTIVERHRHRYEVNNMLLKQ--IEDAGLRVAGRSGDDQ- 496 (545)
T ss_dssp --------CCEEEEEEEEE--CTTCHHHH--------HTTSSEEEEEEEECCEECHHHHHH--HHHTTCEEEEECSSSC-
T ss_pred ccccccCccccccceeeEe--ccCCHHHH--------hcCCceEEEecCcceEEChHHhhh--cccCCeEEEEECCCCC-
Confidence 0000000000001100000 01222211 121111 13567888887544321 3 48999999998874
Q ss_pred eEEEEEEecCCCEE-EEeecCCccCccc
Q psy12875 273 EFVSTVEHKEYPIV-GIQFHPEKNAYEW 299 (308)
Q Consensus 273 ~~v~ai~~~~~p~~-GvQFHPE~~~~~~ 299 (308)
.+++++++++|+| |+|||||+..++.
T Consensus 497 -~VEaie~~~~p~flGVQFHPE~~~~p~ 523 (545)
T 1s1m_A 497 -LVEIIEVPNHPWFVACQFHPEFTSTPR 523 (545)
T ss_dssp -CEEEEECTTSSSEEEESSCGGGTCCTT
T ss_pred -ceEEEEeCCCCEEEEEeCCCCCCCCCC
Confidence 3889999999987 9999999998765
No 34
>2vdj_A Homoserine O-succinyltransferase; methionine biosynthesis, amino-acid biosynthesis, homoserine transacetylase, homoserine transsuccinylase; 2.00A {Bacillus cereus} PDB: 2ghr_A
Probab=99.66 E-value=4.7e-16 Score=141.70 Aligned_cols=191 Identities=14% Similarity=0.129 Sum_probs=109.9
Q ss_pred CCCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChh---------------HHHH-hcCCC
Q psy12875 16 TDTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDRE---------------YYAE-ILTQI 79 (308)
Q Consensus 16 ~~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~---------------~~~~-~l~~~ 79 (308)
++...|||+-. +.. ...| ...+.+.|...+.++.+..+..... .++. ..+++
T Consensus 33 irplkI~ILnl-mp~----------k~~t-e~qf~rlL~~~~~qv~v~~~~~~~~~~~~~~~~hl~~~y~~f~~~~~~~~ 100 (301)
T 2vdj_A 33 IRALKIAILNL-MPT----------KQET-EAQLLRLIGNTPLQLDVHLLHMESHLSRNVAQEHLTSFYKTFRDIENEKF 100 (301)
T ss_dssp SCCEEEEEECC-CSS----------HHHH-HHHHHHHHTCSSSCEEEEEECCCC------------CCEECHHHHTTSCE
T ss_pred CCCceEEEEeC-CCC----------cCch-HHHHHHHhcCCCCcEEEEEEeccCCCCCCccHHHHhhcccCccccccccc
Confidence 44568999865 211 1122 4456677766665555443332211 1333 24789
Q ss_pred CEEEEcCCCCCCCCC--CchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHHhcCCccccccccccccccceeeec
Q psy12875 80 NGVVIPGGGTGFDHP--NGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLP 157 (308)
Q Consensus 80 dGlilpGG~~~~~~~--~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~p 157 (308)
||+|++|++....+. ..|-. .+.++++.+.++ .+|+||||+|+|+++.+ +||.......
T Consensus 101 DglIITGap~~~~~~ed~~yw~---el~~li~~~~~~--~~~~lgIC~GaQ~~l~~-~~G~~k~~~~------------- 161 (301)
T 2vdj_A 101 DGLIITGAPVETLSFEEVDYWE---ELKRIMEYSKTN--VTSTLHICWGAQAGLYH-HYGVQKYPLK------------- 161 (301)
T ss_dssp EEEEECCCTTTTSCGGGSTTHH---HHHHHHHHHHHH--EEEEEEETHHHHHHHHH-HHCCCCEEEE-------------
T ss_pred CEEEECCCCCcCCCcccCchHH---HHHHHHHHHHHc--CCcEEEEcHHHHHHHHH-hCCCccccCC-------------
Confidence 999999998544331 12222 333334434443 49999999999998877 5553211100
Q ss_pred CCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCcccceeeecccccCCCCCCcCccCCChhHHHhhccCC
Q psy12875 158 GAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKP 237 (308)
Q Consensus 158 g~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 237 (308)
.+.+||- .+ ... ...++|+.+++..+.+
T Consensus 162 -----------------~K~~Gv~------------~~-------------~~~----~~~~pL~~g~~~~f~~------ 189 (301)
T 2vdj_A 162 -----------------EKMFGVF------------EH-------------EVR----EQHVKLLQGFDELFFA------ 189 (301)
T ss_dssp -----------------EEEEEEE------------EE-------------EEC----CSSCGGGTTCCSEEEE------
T ss_pred -----------------CCEEEEE------------EE-------------Eec----CCCCccccCCCCceEe------
Confidence 0112221 11 000 2467899888776643
Q ss_pred ceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEecCCCEEEEeecCCccCc
Q psy12875 238 LTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNAY 297 (308)
Q Consensus 238 ~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~~~p~~GvQFHPE~~~~ 297 (308)
.++|+-.+..+.+. .+ ++++++|.|+.++ +++++.++.+++++|||||.+..
T Consensus 190 --phsr~~~~~~~~v~--~~-pga~vLA~S~~~~---~~~~~~~~~~~~~vQgHpEyd~~ 241 (301)
T 2vdj_A 190 --VHSRHTEVRESDIR--EV-KELTLLANSEEAG---VHLVIGQEGRQVFALGHSEYSCD 241 (301)
T ss_dssp --EEEEEEECCHHHHH--TC-TTEEEEEEETTTE---EEEEEEGGGTEEEECSCTTCCTT
T ss_pred --eeEeccCcCHHHcc--CC-CCCEEEEeCCCCc---ceEEEecCCCEEEEECCCCCCHH
Confidence 44433233322221 14 3999999999998 66999866679999999999865
No 35
>2h2w_A Homoserine O-succinyltransferase; TM0881, (EC 2.3.1.46), HOM O-transsuccinylase, HTS, (TM0881), structural genomics; 2.52A {Thermotoga maritima}
Probab=99.64 E-value=8.7e-16 Score=140.32 Aligned_cols=190 Identities=16% Similarity=0.140 Sum_probs=109.8
Q ss_pred CCCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCC--------hhH-------HHH-hcCCC
Q psy12875 16 TDTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQD--------REY-------YAE-ILTQI 79 (308)
Q Consensus 16 ~~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~--------~~~-------~~~-~l~~~ 79 (308)
++...|||+-. +.. ...| ...+.+.|...+.++.+..+... .+- ++. ..+++
T Consensus 45 irplkI~ILnl-mp~----------k~~t-e~qf~rlL~~~~~qv~v~~~~~~~~~~~~~~~~hl~~~y~~f~~~~~~~~ 112 (312)
T 2h2w_A 45 IRPLEILILNL-MPD----------KIKT-EIQLLRLLGNTPLQVNVTLLYTETHKPKHTPIEHILKFYTTFSAVKDRKF 112 (312)
T ss_dssp CCCEEEEEECC-CSS----------HHHH-HHHHHHHHHSSSSCEEEEEECCSCCCCCSSCHHHHHHHCBCGGGTTTCCE
T ss_pred CCCceEEEEeC-CCC----------cCch-HHHHHHHhcCCCCcEEEEEEEccCCCCCCccHHHHhhccCCcccccccCc
Confidence 44568999965 211 1122 45667788777766555433221 111 111 24679
Q ss_pred CEEEEcCCCCCCCCC--CchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHHhcCCccccccccccccccceeeec
Q psy12875 80 NGVVIPGGGTGFDHP--NGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLP 157 (308)
Q Consensus 80 dGlilpGG~~~~~~~--~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~p 157 (308)
||+|++|++....+. ..|-.....++++ +.++ .+|+||||+|+|+++.+ +||.......
T Consensus 113 DglIITGsP~~~~~~ed~~yw~el~~li~~---~~~~--~~p~LGIC~GaQ~~l~~-~~G~~k~~~~------------- 173 (312)
T 2h2w_A 113 DGFIITGAPVELLPFEEVDYWEELTEIMEW---SRHN--VYSTMFICWAAQAGLYY-FYGIPKYELP------------- 173 (312)
T ss_dssp EEEEECCCSCTTSCGGGSTTHHHHHHHHHH---HHHH--EEEEEEETHHHHHHHHH-HHCCCCEEEE-------------
T ss_pred CEEEECCCCCCCCCCccCchHHHHHHHHHH---HHHc--CCcEEEECHHHHHHHHH-hCCCccccCC-------------
Confidence 999999998544331 1222223344444 4343 49999999999998888 6653211100
Q ss_pred CCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCcccceeeecccccCCCCCCcCccCCChhHHHhhccCC
Q psy12875 158 GAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKP 237 (308)
Q Consensus 158 g~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 237 (308)
.+.+||- .+ .. ...++|+++++..+.+
T Consensus 174 -----------------~K~~Gv~------------~~-----------~~-------~~~~pL~~g~~~~f~v------ 200 (312)
T 2h2w_A 174 -----------------QKLSGVY------------KH-----------RV-------AKDSVLFRGHDDFFWA------ 200 (312)
T ss_dssp -----------------EEEEEEE------------EE-----------EE-------SSCCGGGTTCCSEEEE------
T ss_pred -----------------CCEEEEE------------EE-----------EE-------cCCCccccCCCCceEe------
Confidence 0112221 11 00 1266788888776543
Q ss_pred ceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEecCCCEEEEeecCCccCc
Q psy12875 238 LTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNAY 297 (308)
Q Consensus 238 ~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~~~p~~GvQFHPE~~~~ 297 (308)
.++|+..+....+. .+++++++|.|+.++ +++++.++.+++++|||||.+..
T Consensus 201 --phsr~~e~~~~~v~---~~pga~vLA~S~~~~---~q~~~~~~~~~~~vQgHPEyd~~ 252 (312)
T 2h2w_A 201 --PHSRYTEVKKEDID---KVPELEILAESDEAG---VYVVANKSERQIFVTGHPEYDRY 252 (312)
T ss_dssp --EEEEEEECCHHHHT---TCC-CEEEEEETTTE---EEEEECSSSSEEEECSCTTCCTT
T ss_pred --eEEeccccCHHHcc---CCCCCEEEEcCCCCc---ceEEEecCCCEEEEECCCCCCHH
Confidence 44433333322221 225999999999998 66999877789999999999865
No 36
>3ugj_A Phosphoribosylformylglycinamidine synthase; amidotransferase, glutaminase, thioester intermediate, ligas; HET: ADP; 1.78A {Salmonella enterica subsp} PDB: 1t3t_A* 3ujn_A* 3umm_A*
Probab=99.25 E-value=7.4e-11 Score=125.20 Aligned_cols=101 Identities=16% Similarity=0.152 Sum_probs=65.3
Q ss_pred CCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCC-C
Q psy12875 17 DTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHP-N 95 (308)
Q Consensus 17 ~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~-~ 95 (308)
.||.|+|+..+..+ ...++.++++++|+.+..+++.+- ..-+..++++|+|++|||.+.-+.. .
T Consensus 1046 ~~pkVaIi~~~G~N--------------~~~~~~~A~~~aG~~~~~v~~~dl-~~~~~~l~~~d~lvlPGGfSygD~l~~ 1110 (1303)
T 3ugj_A 1046 ARPKVAVLREQGVN--------------SHVEMAAAFHRAGFDAIDVHMSDL-LGGRIGLGNFHALVACGGFSYGDVLGA 1110 (1303)
T ss_dssp CCCEEEEEECTTCC--------------CHHHHHHHHHHTTCEEEEEEHHHH-HTTSCCGGGCSEEEECCSCGGGGTTST
T ss_pred CCCEEEEEecCCcC--------------CHHHHHHHHHHhCCceEEEeeccc-ccCcccHhhCCEEEECCCCcchhhhcc
Confidence 58999999887653 234677899999999998875310 0001257789999999997522110 0
Q ss_pred chhHHH-----HHHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875 96 GYADAG-----RQILHLVDKINEEGVTFPVLGVCLGFELILQV 133 (308)
Q Consensus 96 ~~~~~~-----~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~ 133 (308)
.-.... ..+.+.++++.++ .++|+||||+|||+|+.+
T Consensus 1111 g~~~a~~~l~~~~l~~~l~~~~~~-~g~pvLGICnG~QlL~e~ 1152 (1303)
T 3ugj_A 1111 GEGWAKSILFNHRVRDEFETFFHR-PQTLALGVCNGCQMMSNL 1152 (1303)
T ss_dssp THHHHHHHHTSHHHHHHHHHHHHS-SSCEEEEETHHHHHHHTT
T ss_pred chhHHHHHHhchhHHHHHHHHHHh-CCCcEEEECHHHHHHHHh
Confidence 000000 1344555655432 359999999999999976
No 37
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.65 E-value=4.7e-08 Score=84.29 Aligned_cols=102 Identities=17% Similarity=0.127 Sum_probs=70.1
Q ss_pred CCCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCC-ChhHHHHhcCCCCEEEEcCCCCCCCCC
Q psy12875 16 TDTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQ-DREYYAEILTQINGVVIPGGGTGFDHP 94 (308)
Q Consensus 16 ~~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~-~~~~~~~~l~~~dGlilpGG~~~~~~~ 94 (308)
...|.|++...-+.. +.++.|+ +++.+++++.|+++..+.+.. +.++..+.+.++|+|++|||.. .
T Consensus 25 ~~~~~i~~Ip~As~~--------~~~~~~~-~s~~~a~~~lG~~v~~~~i~~~~~~~~~~~l~~ad~I~l~GG~~-~--- 91 (206)
T 3l4e_A 25 LQGKTVTFIPTASTV--------EEVTFYV-EAGKKALESLGLLVEELDIATESLGEITTKLRKNDFIYVTGGNT-F--- 91 (206)
T ss_dssp CTTCEEEEECGGGGG--------CSCCHHH-HHHHHHHHHTTCEEEECCTTTSCHHHHHHHHHHSSEEEECCSCH-H---
T ss_pred cCCCEEEEECCCCCC--------CCHHHHH-HHHHHHHHHcCCeEEEEEecCCChHHHHHHHHhCCEEEECCCCH-H---
Confidence 345889888765432 1124565 578999999999887664332 3344445678899999999852 1
Q ss_pred CchhHH--HHHHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875 95 NGYADA--GRQILHLVDKINEEGVTFPVLGVCLGFELILQV 133 (308)
Q Consensus 95 ~~~~~~--~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~ 133 (308)
...+. ...+.+.+++++++| +|++|+|.|||+++..
T Consensus 92 -~l~~~L~~~gl~~~l~~~~~~G--~p~~G~sAGa~~l~~~ 129 (206)
T 3l4e_A 92 -FLLQELKRTGADKLILEEIAAG--KLYIGESAGAVITSPN 129 (206)
T ss_dssp -HHHHHHHHHTHHHHHHHHHHTT--CEEEEETHHHHTTSSB
T ss_pred -HHHHHHHHCChHHHHHHHHHcC--CeEEEECHHHHHhccc
Confidence 11121 125678888888855 9999999999999854
No 38
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=98.48 E-value=1.1e-07 Score=80.90 Aligned_cols=45 Identities=22% Similarity=0.402 Sum_probs=36.4
Q ss_pred eeeecCCCCcch----hhhHhhhcCCCCeeeeehhHHHHHHHhCCcccc
Q psy12875 153 LKFLPGAKRSSL----FSQINEEGVTFPVLGVCLGFELILQVSNNDTDF 197 (308)
Q Consensus 153 l~~~pg~~~~~~----~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~ 197 (308)
+.++|||+.+.. ...++....++|+||||+|||+|+.++|+++.+
T Consensus 51 iil~gGpg~~~~~~~~~~l~~~~~~~~PilGIC~G~Qll~~~~Gg~v~~ 99 (192)
T 1i1q_B 51 LMLSPGPGVPSEAGCMPELLTRLRGKLPIIGICLGHQAIVEAYGGYVGQ 99 (192)
T ss_dssp EEECCCSSCGGGSTTHHHHHHHHBTTBCEEEETHHHHHHHHHTSCCCCC
T ss_pred EEECCCCcCchhCchHHHHHHHHhcCCCEEEECcChHHHHHHhCCEEEe
Confidence 889999998753 224444567899999999999999999998755
No 39
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=98.41 E-value=1e-07 Score=83.49 Aligned_cols=98 Identities=14% Similarity=0.144 Sum_probs=66.3
Q ss_pred CCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCc
Q psy12875 17 DTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNG 96 (308)
Q Consensus 17 ~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~ 96 (308)
.+|.|+|...-... .+ ++.|+ +++.+++++.|+++..+....+ ..+.++++|+|++|||.. . .
T Consensus 30 ~~~~i~iI~~a~~~-------~~-~~~~~-~~~~~al~~lG~~~~~v~~~~d---~~~~l~~ad~I~lpGG~~--~---~ 92 (229)
T 1fy2_A 30 GRRSAVFIPFAGVT-------QT-WDEYT-DKTAEVLAPLGVNVTGIHRVAD---PLAAIEKAEIIIVGGGNT--F---Q 92 (229)
T ss_dssp TCCEEEEECTTCCS-------SC-HHHHH-HHHHHHHGGGTCEEEETTSSSC---HHHHHHHCSEEEECCSCH--H---H
T ss_pred CCCeEEEEECCCCC-------CC-HHHHH-HHHHHHHHHCCCEEEEEecccc---HHHHHhcCCEEEECCCcH--H---H
Confidence 46888888654321 11 23454 5788999999998766543222 223567799999999852 1 1
Q ss_pred hhHHHH--HHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875 97 YADAGR--QILHLVDKINEEGVTFPVLGVCLGFELILQV 133 (308)
Q Consensus 97 ~~~~~~--~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~ 133 (308)
..+..+ .+.+.+++++++| +|++|+|.|||+|+..
T Consensus 93 ~~~~l~~~gl~~~l~~~~~~G--~p~~G~sAG~~~l~~~ 129 (229)
T 1fy2_A 93 LLKESRERGLLAPMADRVKRG--ALYIGWSAGANLACPT 129 (229)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT--CEEEEETHHHHHTSSB
T ss_pred HHHHHHHCChHHHHHHHHHcC--CEEEEECHHHHhhccc
Confidence 222222 4677788888755 9999999999999976
No 40
>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B*
Probab=98.33 E-value=3.2e-07 Score=85.93 Aligned_cols=48 Identities=23% Similarity=0.362 Sum_probs=39.1
Q ss_pred cceeeecCCCCcch----hhhHhhh-cCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875 151 LNLKFLPGAKRSSL----FSQINEE-GVTFPVLGVCLGFELILQVSNNDTDFR 198 (308)
Q Consensus 151 ~~l~~~pg~~~~~~----~~~i~~~-~~~~PilGiClG~Qll~~~~G~~v~~~ 198 (308)
.++.+++||+.|.. ...+++. ..++|+||||+|||+|+.++||++.+.
T Consensus 233 DGliLsGGPgdp~~~~~~~~~Ir~~~~~~~PILGIClG~QLLa~A~GG~v~k~ 285 (379)
T 1a9x_B 233 DGIFLSNGPGDPAPCDYAITAIQKFLETDIPVFGICLGHQLLALASGAKTVKM 285 (379)
T ss_dssp SEEEECCCSBCSTTCHHHHHHHHHHTTSCCCEEEETHHHHHHHHHTTCCEEEE
T ss_pred CEEEEeCCCCChHHHHHHHHHHHHHHHcCCCEEEECchHHHHHHHhCcEEEec
Confidence 56999999998763 4455654 457999999999999999999998663
No 41
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1
Probab=98.31 E-value=4.2e-07 Score=77.37 Aligned_cols=48 Identities=27% Similarity=0.348 Sum_probs=37.6
Q ss_pred cceeeecCCCCcch-------hhhHhhhcCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875 151 LNLKFLPGAKRSSL-------FSQINEEGVTFPVLGVCLGFELILQVSNNDTDFR 198 (308)
Q Consensus 151 ~~l~~~pg~~~~~~-------~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~ 198 (308)
..+.+.||++.+.. ...+++...++|+||||+|||+|+.++||++.+.
T Consensus 47 dglil~gG~~~~~~~~~~~~~~~~i~~~~~~~PvLGIC~G~QlL~~~~gg~v~~~ 101 (195)
T 1qdl_B 47 DRLIISPGPGTPEKREDIGVSLDVIKYLGKRTPILGVCLGHQAIGYAFGAKIRRA 101 (195)
T ss_dssp SEEEECCCSSCTTSHHHHTTHHHHHHHHTTTSCEEEETHHHHHHHHHTTCEEEEE
T ss_pred CEEEECCCCCChhhhhhhhHHHHHHHHhcCCCcEEEEehHHHHHHHHhCCEEecc
Confidence 35788888877552 2445555568999999999999999999998764
No 42
>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans}
Probab=98.21 E-value=8e-07 Score=78.00 Aligned_cols=48 Identities=23% Similarity=0.259 Sum_probs=37.6
Q ss_pred cceeeecCCCCcc-------------hhhhHhh-hcCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875 151 LNLKFLPGAKRSS-------------LFSQINE-EGVTFPVLGVCLGFELILQVSNNDTDFR 198 (308)
Q Consensus 151 ~~l~~~pg~~~~~-------------~~~~i~~-~~~~~PilGiClG~Qll~~~~G~~v~~~ 198 (308)
..+.+++||..|. ....|++ ...++|+||||+|||+|+.++||+|.+.
T Consensus 47 d~lii~GGp~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~~Gg~v~~~ 108 (236)
T 3l7n_A 47 DMLILMGGPQSPSSTKKEFPYYDAQAEVKLIQKAAKSEKIIVGVCLGAQLMGVAYGADYLHS 108 (236)
T ss_dssp SEEEECCCSSCTTCCTTTCTTCCHHHHHHHHHHHHHTTCEEEEETHHHHHHHHHTTCCCEEE
T ss_pred CEEEECCCCCCcccccccCcccchHHHHHHHHHHHHcCCCEEEEchHHHHHHHHhCCEEecC
Confidence 4688999998752 2334444 3568999999999999999999998774
No 43
>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1
Probab=98.05 E-value=2.4e-06 Score=75.09 Aligned_cols=48 Identities=25% Similarity=0.352 Sum_probs=36.3
Q ss_pred cceeeecCCCCcc----------hhhhHhhh-cCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875 151 LNLKFLPGAKRSS----------LFSQINEE-GVTFPVLGVCLGFELILQVSNNDTDFR 198 (308)
Q Consensus 151 ~~l~~~pg~~~~~----------~~~~i~~~-~~~~PilGiClG~Qll~~~~G~~v~~~ 198 (308)
..+.+.+||..+. ....+++. ..++|+||||+|||+|+.++||++.+.
T Consensus 59 Dglil~GG~~~~~~~~~~~~l~~~~~~i~~~~~~~~PiLGIC~G~QlL~~alGG~v~~~ 117 (239)
T 1o1y_A 59 SLVVLLGGYMGAYEEEKYPFLKYEFQLIEEILKKEIPFLGICLGSQMLAKVLGASVYRG 117 (239)
T ss_dssp SEEEECCCSCCTTCTTTCTHHHHHHHHHHHHHHHTCCEEEETHHHHHHHHHTTCCEEEC
T ss_pred CEEEECCCCccccCCccChhHHHHHHHHHHHHHCCCCEEEEchhHHHHHHHcCCeEecC
Confidence 4578888875542 23344443 568999999999999999999998774
No 44
>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A*
Probab=98.04 E-value=2.3e-06 Score=85.47 Aligned_cols=48 Identities=17% Similarity=0.213 Sum_probs=38.4
Q ss_pred cceeeecCCCCcch---------hhhHhh-hcCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875 151 LNLKFLPGAKRSSL---------FSQINE-EGVTFPVLGVCLGFELILQVSNNDTDFR 198 (308)
Q Consensus 151 ~~l~~~pg~~~~~~---------~~~i~~-~~~~~PilGiClG~Qll~~~~G~~v~~~ 198 (308)
..+.++|||+.+.. ...+++ ...++|+||||||||+|+.++||+|.+.
T Consensus 488 DgIIlsGGPg~p~d~~~p~i~~~~~lI~~a~~~~iPiLGIClG~QlLa~alGG~V~~~ 545 (645)
T 3r75_A 488 DVVVMGPGPGDPSDAGDPRIARLYAWLRHLIDEGKPFMAVCLSHQILNAILGIPLVRR 545 (645)
T ss_dssp SEEEECCCSSCTTCTTSHHHHHHHHHHHHHHHHTCCEEEETHHHHHHHHHTTCCEEEE
T ss_pred CEEEECCCCCChhhhhhhhHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHhCCEEEcC
Confidence 46899999998763 223333 2568999999999999999999999875
No 45
>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*
Probab=97.96 E-value=4.7e-06 Score=73.83 Aligned_cols=48 Identities=23% Similarity=0.439 Sum_probs=36.7
Q ss_pred cceeeecCCCCcc--------hhhhHhh-hcCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875 151 LNLKFLPGAKRSS--------LFSQINE-EGVTFPVLGVCLGFELILQVSNNDTDFR 198 (308)
Q Consensus 151 ~~l~~~pg~~~~~--------~~~~i~~-~~~~~PilGiClG~Qll~~~~G~~v~~~ 198 (308)
..+.+.+||..+. ....+++ ...++|+||||+|||+|+.++||+|.+.
T Consensus 50 d~lIl~GGp~~~~d~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Qll~~~lGG~V~~~ 106 (250)
T 3m3p_A 50 SGLAMMGGPMSANDDLPWMPTLLALIRDAVAQRVPVIGHCLGGQLLAKAMGGEVTDS 106 (250)
T ss_dssp SEEEECCCSSCTTSCCTTHHHHHHHHHHHHHHTCCEEEETHHHHHHHHHTTCCEEEE
T ss_pred CEEEECCCCCcccccchHHHHHHHHHHHHHHcCCCEEEECHHHHHHHHHhCCEEEeC
Confidence 4588888887543 1233443 2568999999999999999999999875
No 46
>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A
Probab=97.96 E-value=6.1e-06 Score=69.61 Aligned_cols=46 Identities=22% Similarity=0.397 Sum_probs=35.1
Q ss_pred ceeeecCCCCcc----hhhhHhhh-cCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875 152 NLKFLPGAKRSS----LFSQINEE-GVTFPVLGVCLGFELILQVSNNDTDFR 198 (308)
Q Consensus 152 ~l~~~pg~~~~~----~~~~i~~~-~~~~PilGiClG~Qll~~~~G~~v~~~ 198 (308)
.+.+.+|+ .+. ....+++. ..++|+||||+|||+|+.++||++.+.
T Consensus 46 glil~Gg~-~~~~~~~~~~~i~~~~~~~~PilGIC~G~Q~l~~~~gg~v~~~ 96 (189)
T 1wl8_A 46 GIIFSGGP-SLENTGNCEKVLEHYDEFNVPILGICLGHQLIAKFFGGKVGRG 96 (189)
T ss_dssp EEEECCCS-CTTCCTTHHHHHHTGGGTCSCEEEETHHHHHHHHHHTCEEEEC
T ss_pred EEEECCCC-ChhhhhhHHHHHHHHhhCCCeEEEEcHHHHHHHHHhCCceecC
Confidence 46676666 443 24455554 678999999999999999999998764
No 47
>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2
Probab=97.92 E-value=3.5e-05 Score=65.24 Aligned_cols=96 Identities=19% Similarity=0.396 Sum_probs=63.6
Q ss_pred CEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCCh---------h-----HHHH-hcCCCCEEE
Q psy12875 19 PVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDR---------E-----YYAE-ILTQINGVV 83 (308)
Q Consensus 19 P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~---------~-----~~~~-~l~~~dGli 83 (308)
..|+|+..+... ...+ ....+.|+++|+++..+...... . .+++ ..+.+|+|+
T Consensus 24 ~kV~ill~~g~~----------~~e~--~~~~~~l~~ag~~v~~vs~~~~~~v~~~~g~~~v~~~~~l~~~~~~~~D~li 91 (193)
T 1oi4_A 24 KKIAVLITDEFE----------DSEF--TSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVTPAEFDALL 91 (193)
T ss_dssp CEEEEECCTTBC----------THHH--HHHHHHHHHTTCEEEEEESSTTCEEECTTSSCEEECCEEGGGCCGGGCSEEE
T ss_pred CEEEEEECCCCC----------HHHH--HHHHHHHHHCCCEEEEEECCCCcceecCCCCeEEECCCChHHCCcccCCEEE
Confidence 578998775322 0111 24578899999999888654321 0 0111 134689999
Q ss_pred EcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875 84 IPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQV 133 (308)
Q Consensus 84 lpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~ 133 (308)
+|||.. . ........+.++++++.+++ +||.|||.|.|+|+.+
T Consensus 92 vpGG~~-~----~~l~~~~~l~~~l~~~~~~g--k~i~aIC~G~~lLa~a 134 (193)
T 1oi4_A 92 LPGGHS-P----DYLRGDNRFVTFTRDFVNSG--KPVFAICHGPQLLISA 134 (193)
T ss_dssp ECCBTH-H----HHHTTSHHHHHHHHHHHHTT--CCEEEETTTHHHHHHH
T ss_pred ECCCcC-H----HHhhhCHHHHHHHHHHHHcC--CEEEEECHHHHHHHHC
Confidence 999941 1 01111246888899988855 9999999999999987
No 48
>2w7t_A CTP synthetase, putative cytidine triphosphate synthase; glutaminase domain, trypsanosoma brucei, ligase, acivicin; HET: 5CS; 2.10A {Trypanosoma brucei}
Probab=97.90 E-value=4.1e-06 Score=75.15 Aligned_cols=46 Identities=13% Similarity=0.155 Sum_probs=35.9
Q ss_pred cceeeecCCCCcch---hhhHhhh-cCCCCeeeeehhHHHHHHHhCCccc
Q psy12875 151 LNLKFLPGAKRSSL---FSQINEE-GVTFPVLGVCLGFELILQVSNNDTD 196 (308)
Q Consensus 151 ~~l~~~pg~~~~~~---~~~i~~~-~~~~PilGiClG~Qll~~~~G~~v~ 196 (308)
..+.+.+|++.+.. ...++.. ..++|+||||+|||+|+.++|+++.
T Consensus 69 dgiil~GG~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Qll~~a~Gg~v~ 118 (273)
T 2w7t_A 69 DGIFVPGGFGNRGVDGKCAAAQVARMNNIPYFGVXLGMQVAVIELSRNVV 118 (273)
T ss_dssp SEEEECCCCTTTTHHHHHHHHHHHHHHTCCEEEETHHHHHHHHHHHHHTT
T ss_pred CEEEecCCCCCcCchhHHHHHHHHHHCCCcEEEECcCHHHHHHHHhCccc
Confidence 45888888877543 3344443 4689999999999999999999985
No 49
>2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1
Probab=97.90 E-value=5.9e-06 Score=71.24 Aligned_cols=48 Identities=17% Similarity=0.347 Sum_probs=35.0
Q ss_pred cceeeecC-CCCcch---hhhHhh--hcCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875 151 LNLKFLPG-AKRSSL---FSQINE--EGVTFPVLGVCLGFELILQVSNNDTDFR 198 (308)
Q Consensus 151 ~~l~~~pg-~~~~~~---~~~i~~--~~~~~PilGiClG~Qll~~~~G~~v~~~ 198 (308)
..+.+.+| |+.+.. ...+.+ ...++|+||||+|||+|+.++||++.+.
T Consensus 56 DglIl~GG~p~~~~~~~~~~~l~~~~~~~~~PiLGIC~G~Qll~~~lGg~v~~~ 109 (212)
T 2a9v_A 56 DGLVLSGGAPNIDEELDKLGSVGKYIDDHNYPILGICVGAQFIALHFGASVVKA 109 (212)
T ss_dssp SEEEEEEECSCGGGTGGGHHHHHHHHHHCCSCEEEETHHHHHHHHHTTCEEEEE
T ss_pred CEEEECCCCCCCCcccccchhHHHHHHhCCCCEEEEChHHHHHHHHhCCEEEcC
Confidence 45888888 665442 122222 2568999999999999999999998764
No 50
>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua}
Probab=97.89 E-value=9.5e-06 Score=71.90 Aligned_cols=34 Identities=12% Similarity=0.292 Sum_probs=27.5
Q ss_pred hhhHhhh-cCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875 165 FSQINEE-GVTFPVLGVCLGFELILQVSNNDTDFR 198 (308)
Q Consensus 165 ~~~i~~~-~~~~PilGiClG~Qll~~~~G~~v~~~ 198 (308)
...+++. ..++|+||||+|||+|+.++||++...
T Consensus 98 ~~lir~a~~~~~PiLGIC~G~Qll~~a~Gg~v~~~ 132 (254)
T 3fij_A 98 IALVRAALDAGKPIFAICRGMQLVNVALGGTLYQD 132 (254)
T ss_dssp HHHHHHHHHTTCCEEEETHHHHHHHHHTTCCEESS
T ss_pred HHHHHHHHHcCCCEEEECHHHHHHHHHhCCceecc
Confidence 3445543 568999999999999999999998653
No 51
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=97.81 E-value=3.3e-06 Score=72.49 Aligned_cols=45 Identities=33% Similarity=0.560 Sum_probs=30.2
Q ss_pred eeecCCCCcchh-h------hHhh-hcCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875 154 KFLPGAKRSSLF-S------QINE-EGVTFPVLGVCLGFELILQVSNNDTDFR 198 (308)
Q Consensus 154 ~~~pg~~~~~~~-~------~i~~-~~~~~PilGiClG~Qll~~~~G~~v~~~ 198 (308)
.+.||++.+... . .++. ...++|+||||+|||+|+.++|+++...
T Consensus 44 lilPG~g~~~~~~~~~~~~~~i~~~~~~~~PvlGIClG~QlL~~~~g~~~~~~ 96 (211)
T 4gud_A 44 LFLPGVGTASEAMKNLTERDLIELVKRVEKPLLGICLGMQLLGKLSEEKGQKA 96 (211)
T ss_dssp EEECCCSCHHHHHHHHHHTTCHHHHHHCCSCEEEETHHHHTTSSEECCC----
T ss_pred EEECCCCCHHHHHHHHHhcChHHHHHHcCCCEEEEchhHhHHHHHhCCccccc
Confidence 344999886521 1 1222 2468999999999999999999988764
No 52
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*
Probab=97.80 E-value=8.6e-06 Score=79.51 Aligned_cols=49 Identities=16% Similarity=0.226 Sum_probs=39.1
Q ss_pred cceeeecCCCCcch---hhhHhhh-cCCCCeeeeehhHHHHHHHhCCcccccC
Q psy12875 151 LNLKFLPGAKRSSL---FSQINEE-GVTFPVLGVCLGFELILQVSNNDTDFRK 199 (308)
Q Consensus 151 ~~l~~~pg~~~~~~---~~~i~~~-~~~~PilGiClG~Qll~~~~G~~v~~~~ 199 (308)
.++.+++||+.+.. ...++.. ..++|+||||+|||+|+.++|+++...+
T Consensus 345 DGIilsGGpg~~~~~g~~~~i~~a~~~~~PiLGIClG~Qll~va~Gg~v~~l~ 397 (545)
T 1s1m_A 345 DAILVPGGFGYRGVEGMITTARFARENNIPYLGICLGMQVALIDYARHVANME 397 (545)
T ss_dssp SEEEECCCCSSTTHHHHHHHHHHHHHTTCCEEEETHHHHHHHHHHHHHHHCCT
T ss_pred CEEEECCCCCCccchhhHHHHHHHHHCCCcEEEECChHHHHHHHhCCceecCC
Confidence 56899999998763 3344443 4689999999999999999999987653
No 53
>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A
Probab=97.78 E-value=1.1e-05 Score=78.98 Aligned_cols=49 Identities=14% Similarity=0.207 Sum_probs=39.1
Q ss_pred ccceeeecCCCCcch---hhhHhhh-cCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875 150 NLNLKFLPGAKRSSL---FSQINEE-GVTFPVLGVCLGFELILQVSNNDTDFR 198 (308)
Q Consensus 150 ~~~l~~~pg~~~~~~---~~~i~~~-~~~~PilGiClG~Qll~~~~G~~v~~~ 198 (308)
..++.+.+|++.+.. +..++.. ..++|+||||||||+|+.++|+++...
T Consensus 356 ~DGIILpGGfGd~~~~g~i~~ir~a~e~~iPiLGICLGmQlL~~a~Gg~v~~l 408 (550)
T 1vco_A 356 VSGILVPGGFGVRGIEGKVRAAQYARERKIPYLGICLGLQIAVIEFARNVAGL 408 (550)
T ss_dssp CSCEEECCCCSSTTHHHHHHHHHHHHHTTCCEEEETHHHHHHHHHHHHHTSCC
T ss_pred CCEEEECCCCCCcchhhhHHHHHHHHHCCCcEEEECcCHHHHHHHhCcccccC
Confidence 356889999998764 3344444 468999999999999999999988764
No 54
>2v4u_A CTP synthase 2; pyrimidine biosynthesis, glutamine amidotransferase, glutaminase domain, 5-OXO-L-norleucine, DON, ligase, phosphoprotein; HET: CYD; 2.3A {Homo sapiens} PDB: 2vkt_A
Probab=97.78 E-value=9.6e-06 Score=73.34 Aligned_cols=46 Identities=20% Similarity=0.186 Sum_probs=35.4
Q ss_pred cceeeecCCCCcch---hhhHhhh-cCCCCeeeeehhHHHHHHHhCCccc
Q psy12875 151 LNLKFLPGAKRSSL---FSQINEE-GVTFPVLGVCLGFELILQVSNNDTD 196 (308)
Q Consensus 151 ~~l~~~pg~~~~~~---~~~i~~~-~~~~PilGiClG~Qll~~~~G~~v~ 196 (308)
.++.+.+|++.+.. ...+++. ..++|+||||+|||+|+.++||++.
T Consensus 92 dgiil~GG~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Q~l~~a~Gg~v~ 141 (289)
T 2v4u_A 92 DGILVPGGFGIRGTLGKLQAISWARTKKIPFLGVXLGMQLAVIEFARNCL 141 (289)
T ss_dssp SEEEECSCCSSTTHHHHHHHHHHHHHTTCCEEEETHHHHHHHHHHHHHHS
T ss_pred CEEEecCCCCchhHHHHHHHHHHHHHcCCcEEEECccHHHHHHHHhcccc
Confidence 35777777776542 3445544 5689999999999999999999985
No 55
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=97.76 E-value=1.4e-05 Score=78.24 Aligned_cols=48 Identities=17% Similarity=0.272 Sum_probs=32.1
Q ss_pred cceeeecCCCCcchhh--h-Hhh-hcCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875 151 LNLKFLPGAKRSSLFS--Q-INE-EGVTFPVLGVCLGFELILQVSNNDTDFR 198 (308)
Q Consensus 151 ~~l~~~pg~~~~~~~~--~-i~~-~~~~~PilGiClG~Qll~~~~G~~v~~~ 198 (308)
.++.+++||..+.... . .+. ...++|+||||+|||+|+.++||+|.+.
T Consensus 55 dgIILsGGp~sv~~~~~~~~~~~~~~~~~PvLGIC~G~Qlla~~lGG~V~~~ 106 (527)
T 3tqi_A 55 HGIILSGGPETVTLSHTLRAPAFIFEIGCPVLGICYGMQTMAYQLGGKVNRT 106 (527)
T ss_dssp SEEEECCCCC---------CCCSTTTSSSCEEEETHHHHHHHHHSSSCBC--
T ss_pred CEEEECCcCcccccCCChhhHHHHHhcCCCEEEEChHHHHHHHHcCCeEEeC
Confidence 4688888887654211 1 111 2568999999999999999999999764
No 56
>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics; 1.90A {Methanocaldococcus jannaschii}
Probab=97.70 E-value=7e-06 Score=69.04 Aligned_cols=44 Identities=23% Similarity=0.404 Sum_probs=31.9
Q ss_pred cceeeecCCCCcc--------hhhhHhhhcCCCCeeeeehhHHHHHHHhCCccc
Q psy12875 151 LNLKFLPGAKRSS--------LFSQINEEGVTFPVLGVCLGFELILQVSNNDTD 196 (308)
Q Consensus 151 ~~l~~~pg~~~~~--------~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~ 196 (308)
..+.+.+|+..+. ..+.++ ..++|+||||+|||+|+.++|+++.
T Consensus 39 dglil~GG~~~~~~~~~~~~~~~~~i~--~~~~PilGIC~G~Qll~~~~gg~~~ 90 (186)
T 2ywj_A 39 DALIIPGGESTAIGKLMKKYGLLEKIK--NSNLPILGTCAGMVLLSKGTGINQI 90 (186)
T ss_dssp SEEEECCSCHHHHHHHHHHTTHHHHHH--TCCCCEEEETHHHHHHSSCCSSCCC
T ss_pred CEEEECCCCchhhhhhhhccCHHHHHH--hcCCcEEEECHHHHHHHHHhCCCcC
Confidence 3577777765432 112232 5689999999999999999998853
No 57
>4hcj_A THIJ/PFPI domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta-alpha sandwich; HET: MSE; 1.12A {Brachyspira murdochii}
Probab=97.70 E-value=3.8e-05 Score=64.32 Aligned_cols=102 Identities=15% Similarity=0.104 Sum_probs=65.0
Q ss_pred hcccCCCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCC------------hhHHHH-hcCC
Q psy12875 12 TVTSTDTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQD------------REYYAE-ILTQ 78 (308)
Q Consensus 12 ~~~~~~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~------------~~~~~~-~l~~ 78 (308)
+|.++ +.+|.|+....-+ ...++ .-.+.|+++|+++..+..... +..+++ ..++
T Consensus 3 ~m~~t-~~~v~il~~~gFe----------~~E~~--~p~~~l~~ag~~V~~~s~~~~~v~~~~G~~v~~d~~l~~v~~~~ 69 (177)
T 4hcj_A 3 AMGKT-NNILYVMSGQNFQ----------DEEYF--ESKKIFESAGYKTKVSSTFIGTAQGKLGGMTNIDLLFSEVDAVE 69 (177)
T ss_dssp --CCC-CEEEEECCSEEEC----------HHHHH--HHHHHHHHTTCEEEEEESSSEEEEETTSCEEEECEEGGGCCGGG
T ss_pred ccccC-CCEEEEECCCCcc----------HHHHH--HHHHHHHHCCCEEEEEECCCCeEeeCCCCEEecCccHHHCCHhH
Confidence 45544 4677777654321 11222 346888999999988764321 011222 2457
Q ss_pred CCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875 79 INGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQV 133 (308)
Q Consensus 79 ~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~ 133 (308)
+|+|++|||.. + ........+.++++++.+++ +||.+||.|.++|+.+
T Consensus 70 yD~liiPGG~g---~--~~l~~~~~~~~~l~~~~~~~--k~iaaIC~g~~~La~a 117 (177)
T 4hcj_A 70 FDAVVFVGGIG---C--ITLWDDWRTQGLAKLFLDNQ--KIVAGIGSGVVIMANA 117 (177)
T ss_dssp CSEEEECCSGG---G--GGGTTCHHHHHHHHHHHHTT--CEEEEETTHHHHHHHT
T ss_pred CCEEEECCCcc---H--HHHhhCHHHHHHHHHHHHhC--CEEEEecccHHHHHHC
Confidence 89999999952 1 12222346888899988855 9999999999999876
No 58
>3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isopr biosynthesis; 1.90A {Ehrlichia chaffeensis}
Probab=97.70 E-value=0.00024 Score=62.47 Aligned_cols=111 Identities=11% Similarity=0.115 Sum_probs=64.2
Q ss_pred ccCCCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCC----------------h-hHHH---
Q psy12875 14 TSTDTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQD----------------R-EYYA--- 73 (308)
Q Consensus 14 ~~~~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~----------------~-~~~~--- 73 (308)
+.+|...|+|+...+.. +++....=.....+.|+++|+++..+..... . -.+.
T Consensus 19 ~~~M~kkV~ill~~~~~-------~dG~e~~E~~~p~~vL~~aG~~V~~~S~~~g~~~~~~~~~g~~v~~s~g~~v~~d~ 91 (242)
T 3l3b_A 19 PGSMALNSAVILAGCGH-------MDGSEIREAVLVMLELDRHNVNFKCFAPNKNQKQVVDHKKKESVGEVRNILVESAR 91 (242)
T ss_dssp -----CEEEEECCCSST-------TTSCCHHHHHHHHHHHHHTTCEEEEEECSSBCSCEEETTTTEEESCCCBHHHHHHH
T ss_pred cccccCEEEEEEecCCC-------CCCeeHHHHHHHHHHHHHCCCEEEEEecCCCcccccccccCccccccCCeEEecch
Confidence 44455678888764432 2221111112346888999999988765421 0 0111
Q ss_pred ----------H-hcCCCCEEEEcCCCCCC---CC----CCchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875 74 ----------E-ILTQINGVVIPGGGTGF---DH----PNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQV 133 (308)
Q Consensus 74 ----------~-~l~~~dGlilpGG~~~~---~~----~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~ 133 (308)
+ ..+++|+|++|||.... .. ..........+.++++++.+++ +||.+||.|..+|+.+
T Consensus 92 ~~~~~~~~l~dv~~~~~D~livPGG~~~~~~L~~~~~~~~~~~~~~~~l~~~lr~~~~~g--k~IaaIC~G~~~La~a 167 (242)
T 3l3b_A 92 IARGSVYDIEQIRVEEFDMLVIPGGYGVAKNFSNLFDEDKENDYILPEFKNAVREFYNAK--KPIGAVCISPAVVVAL 167 (242)
T ss_dssp HTTTCEEEGGGCCGGGCSEEEECCCHHHHHHHBSTTSCC--CCCBCHHHHHHHHHHHHTT--CCEEEETTHHHHHHHH
T ss_pred hccccCCChHHCCcccCCEEEEcCCcchhhhhhhhhccccccccCCHHHHHHHHHHHHcC--CEEEEECHHHHHHHHh
Confidence 1 12468999999995210 00 0000012246888899988855 9999999999999987
No 59
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}
Probab=97.68 E-value=2.2e-05 Score=77.29 Aligned_cols=49 Identities=18% Similarity=0.294 Sum_probs=36.1
Q ss_pred cceeeecCCCCcch------hhhHhh--hcCCCCeeeeehhHHHHHHHhCCcccccC
Q psy12875 151 LNLKFLPGAKRSSL------FSQINE--EGVTFPVLGVCLGFELILQVSNNDTDFRK 199 (308)
Q Consensus 151 ~~l~~~pg~~~~~~------~~~i~~--~~~~~PilGiClG~Qll~~~~G~~v~~~~ 199 (308)
.++.+++||..+.. ...+.+ ...++|+||||+|||+|+.++||+|.+..
T Consensus 52 dgIIlsGGp~s~~~~~~~~~~~~l~~~a~~~g~PvLGIC~G~QlLa~~lGG~V~~~~ 108 (556)
T 3uow_A 52 KGVILSGGPYSVTEAGSPHLKKEVFEYFLEKKIPIFGICYGMQEIAVQMNGEVKKSK 108 (556)
T ss_dssp EEEEECCCSCCTTSTTCCCCCHHHHHHHHHTTCCEEEETHHHHHHHHHTTCEEEEEE
T ss_pred CEEEECCCCCcccccCCcchhHHHHHHhhhcCCCEEEECHHHHHHHHHhCCcEecCC
Confidence 45788878876531 122222 24589999999999999999999998764
No 60
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=97.68 E-value=2.3e-05 Score=76.55 Aligned_cols=47 Identities=15% Similarity=0.273 Sum_probs=33.5
Q ss_pred ceeeecCCCCcchh--hhH-hh-hcCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875 152 NLKFLPGAKRSSLF--SQI-NE-EGVTFPVLGVCLGFELILQVSNNDTDFR 198 (308)
Q Consensus 152 ~l~~~pg~~~~~~~--~~i-~~-~~~~~PilGiClG~Qll~~~~G~~v~~~ 198 (308)
++.+++||..+... ..+ +. ...++|+||||+|||+|+.++||+|.+.
T Consensus 53 giILsGGp~s~~~~~~~~~~~~~~~~g~PvLGIC~G~Qlla~~~GG~V~~~ 103 (525)
T 1gpm_A 53 GIILSGGPESTTEENSPRAPQYVFEAGVPVFGVCYGMQTMAMQLGGHVEAS 103 (525)
T ss_dssp EEEECCCSSCTTSTTCCCCCGGGGTSSSCEEEETHHHHHHHHHHTCEEECC
T ss_pred EEEECCcCccccccCCcchHHHHHHCCCCEEEEChHHHHHHHHcCCEEEeC
Confidence 57777777654310 111 11 2468999999999999999999999775
No 61
>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens}
Probab=97.62 E-value=2.3e-05 Score=67.91 Aligned_cols=27 Identities=26% Similarity=0.602 Sum_probs=24.3
Q ss_pred cCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875 172 GVTFPVLGVCLGFELILQVSNNDTDFR 198 (308)
Q Consensus 172 ~~~~PilGiClG~Qll~~~~G~~v~~~ 198 (308)
..++|+||||+|||+|+.++||++.+.
T Consensus 94 ~~~~PilGIC~G~Qll~~~~GG~v~~~ 120 (218)
T 2vpi_A 94 TIGKPVLGICYGMQMMNKVFGGTVHKK 120 (218)
T ss_dssp TSSCCEEEETHHHHHHHHHTTCCEEEE
T ss_pred HcCCCEEEEcHHHHHHHHHhCCceEeC
Confidence 457999999999999999999998764
No 62
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=97.62 E-value=3.3e-05 Score=75.14 Aligned_cols=47 Identities=19% Similarity=0.293 Sum_probs=33.2
Q ss_pred ceeeecCCCCcchh--hhH-hh-hcCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875 152 NLKFLPGAKRSSLF--SQI-NE-EGVTFPVLGVCLGFELILQVSNNDTDFR 198 (308)
Q Consensus 152 ~l~~~pg~~~~~~~--~~i-~~-~~~~~PilGiClG~Qll~~~~G~~v~~~ 198 (308)
++.+++||..+... ..+ +. ...++|+||||+|||+|+.++||+|.+.
T Consensus 45 giIlsGGp~s~~~~~~~~~~~~~~~~~~PvLGIC~G~Qlla~~~GG~v~~~ 95 (503)
T 2ywb_A 45 ALILSGGPRSVFDPDAPRPDPRLFSSGLPLLGICYGMQLLAQELGGRVERA 95 (503)
T ss_dssp EEEECCCSSCSSCTTCCCCCGGGGCSSCCEEEETHHHHHHHHTTTCEEECC
T ss_pred EEEECCCCchhccCCCcchHHHHHhCCCCEEEECHHHHHHHHHhCCeEeeC
Confidence 57777777653310 111 11 2468999999999999999999998764
No 63
>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A
Probab=97.59 E-value=0.00035 Score=60.75 Aligned_cols=88 Identities=16% Similarity=0.321 Sum_probs=58.0
Q ss_pred HHHHHHHcCCeEEEEEcCCCh------------------------------hHHHH-hcCCCCEEEEcCCCCCCCCCCch
Q psy12875 49 YVKNIEAAGARVVPILIGQDR------------------------------EYYAE-ILTQINGVVIPGGGTGFDHPNGY 97 (308)
Q Consensus 49 ~~~~l~~aG~~~~~i~~~~~~------------------------------~~~~~-~l~~~dGlilpGG~~~~~~~~~~ 97 (308)
..+.|+++|.++..+...... ..+++ ..+++|+|++|||........++
T Consensus 30 p~~~l~~ag~~v~~~s~~g~~~~v~d~~s~~~~~~~~g~~i~~~~~~~~~~~~l~~~~~~~~D~livpGG~~~~~~~~~~ 109 (232)
T 1vhq_A 30 TLLAISRSGAQAVCFAPDKQQVDVINHLTGEAMTETRNVLIEAARITRGEIRPLAQADAAELDALIVPGGFGAAKNLSNF 109 (232)
T ss_dssp HHHHHHHTTCEEEEEECSSBCSCCBCTTTCCBCSCCCBHHHHHTTTTTTCCEEGGGCCGGGCSEEEECCSTHHHHTSBCH
T ss_pred HHHHHHHCCCEEEEEecCCCCCcccccccccchhhhhhhhHHHHHhhhcCCCCHHHcCcccCCEEEECCCcchHHHHhhh
Confidence 457889999999888654210 01111 13469999999995210000011
Q ss_pred h------HHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHHhcC-Ccc
Q psy12875 98 A------DAGRQILHLVDKINEEGVTFPVLGVCLGFELILQVSNN-DTD 139 (308)
Q Consensus 98 ~------~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~~~g-g~~ 139 (308)
. +..+.+.++++++.+++ +||.+||.|.++|+.+ +. |+.
T Consensus 110 ~~~~~~~~~~~~l~~~l~~~~~~g--k~vaaIC~G~~~La~a-L~~Gr~ 155 (232)
T 1vhq_A 110 ASLGSECTVDRELKALAQAMHQAG--KPLGFMCIAPAMLPKI-FDFPLR 155 (232)
T ss_dssp HHHGGGCCBCHHHHHHHHHHHHTT--CCEEEETTGGGGHHHH-CSSCCE
T ss_pred hccccccccCHHHHHHHHHHHHcC--CEEEEECHHHHHHHHH-hcCCCE
Confidence 0 11346888899988855 9999999999999998 87 754
No 64
>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ...
Probab=97.57 E-value=0.00024 Score=60.04 Aligned_cols=99 Identities=13% Similarity=0.152 Sum_probs=65.0
Q ss_pred CCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCC-------------hhHHHH--hcCCCCE
Q psy12875 17 DTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQD-------------REYYAE--ILTQING 81 (308)
Q Consensus 17 ~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~-------------~~~~~~--~l~~~dG 81 (308)
|...|+|+..+... ...+ ....+.|+++|.++..+..... +..+++ ....+|+
T Consensus 2 m~~~v~ill~~g~~----------~~e~--~~~~~~l~~ag~~v~~vs~~~~~~v~~~~g~~v~~d~~l~~~~~~~~~D~ 69 (197)
T 2rk3_A 2 ASKRALVILAKGAE----------EMET--VIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDV 69 (197)
T ss_dssp CCCEEEEEECTTCC----------HHHH--HHHHHHHHHTTCEEEEEETTCSSCEECTTSCEECCSEEHHHHHTTCCCSE
T ss_pred CCCEEEEEECCCCc----------HHHH--HHHHHHHHHCCCEEEEEEcCCCCccccCCCCEEeCCcCHHHcCCccCCCE
Confidence 44678888765322 0112 2456889999999888865421 111222 2368999
Q ss_pred EEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875 82 VVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQV 133 (308)
Q Consensus 82 lilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~ 133 (308)
|++|||... . ......+.+.++++++.+++ +||.+||.|.++|+.+
T Consensus 70 livpGG~~~--~--~~l~~~~~~~~~l~~~~~~g--k~i~aiC~G~~~La~a 115 (197)
T 2rk3_A 70 VVLPGGNLG--A--QNLSESAAVKEILKEQENRK--GLIATICAGPTALLAH 115 (197)
T ss_dssp EEECCCHHH--H--HHHHHCHHHHHHHHHHHHTT--CEEEEETTTHHHHHHT
T ss_pred EEECCCchh--H--HHhhhCHHHHHHHHHHHHcC--CEEEEECHHHHHHHHC
Confidence 999999410 0 11222346888999988855 9999999999999976
No 65
>1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1
Probab=97.56 E-value=4.3e-05 Score=69.83 Aligned_cols=24 Identities=38% Similarity=0.729 Sum_probs=21.9
Q ss_pred CCCeeeeehhHHHHHHHhCCcccc
Q psy12875 174 TFPVLGVCLGFELILQVSNNDTDF 197 (308)
Q Consensus 174 ~~PilGiClG~Qll~~~~G~~v~~ 197 (308)
++|+||||+|||+|+.++||++..
T Consensus 124 ~~PiLGIC~G~Qll~~a~GG~~~~ 147 (315)
T 1l9x_A 124 YFPVWGTCLGFEELSLLISGECLL 147 (315)
T ss_dssp CCCEEEETHHHHHHHHHHHSSCCC
T ss_pred CceEEEEChHHHHHHHHhCCcccc
Confidence 699999999999999999998654
No 66
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}
Probab=97.55 E-value=4.6e-05 Score=76.80 Aligned_cols=47 Identities=17% Similarity=0.284 Sum_probs=30.4
Q ss_pred ceeeecCCCCcchh--hhH-hh-hcCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875 152 NLKFLPGAKRSSLF--SQI-NE-EGVTFPVLGVCLGFELILQVSNNDTDFR 198 (308)
Q Consensus 152 ~l~~~pg~~~~~~~--~~i-~~-~~~~~PilGiClG~Qll~~~~G~~v~~~ 198 (308)
++.+++||..+... ..+ +. ...++|+||||+|||+|+.++||++.+.
T Consensus 75 GIILsGGp~s~~~~~~~~~~~~i~~~g~PvLGIC~G~QlLa~~lGG~v~~~ 125 (697)
T 2vxo_A 75 AIIISGGPNSVYAEDAPWFDPAIFTIGKPVLGICYGMQMMNKVFGGTVHKK 125 (697)
T ss_dssp EEEEEECC-------CCCCCGGGTTSSCCEEEEEHHHHHHHHHTTCCBCC-
T ss_pred EEEECCCCCcccCccchhHHHHHHhCCCCEEEECHHHHHHHHHhCCeEeec
Confidence 47777777654210 001 11 2457999999999999999999998764
No 67
>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} SCOP: c.23.16.2 PDB: 1g2i_A
Probab=97.47 E-value=0.0004 Score=57.00 Aligned_cols=79 Identities=16% Similarity=0.357 Sum_probs=54.1
Q ss_pred HHHHHHHHcCCeEEEEEcCCCh------------hHHHH-hcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHc
Q psy12875 48 SYVKNIEAAGARVVPILIGQDR------------EYYAE-ILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEE 114 (308)
Q Consensus 48 ~~~~~l~~aG~~~~~i~~~~~~------------~~~~~-~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~ 114 (308)
...+.|+++|.++..+...... ..+++ ....+|+|++|||.. + ........+.++++++.++
T Consensus 20 ~~~~~l~~ag~~v~~vs~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~---~--~~~~~~~~l~~~l~~~~~~ 94 (168)
T 3l18_A 20 YPLHRIKEEGHEVYVASFQRGKITGKHGYSVNVDLTFEEVDPDEFDALVLPGGKA---P--EIVRLNEKAVMITRRMFED 94 (168)
T ss_dssp HHHHHHHHTTCEEEEEESSSEEEECTTSCEEEECEEGGGCCGGGCSEEEECCBSH---H--HHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCEEEEEECCCCEEecCCCcEEeccCChhHCCHhhCCEEEECCCcC---H--HHhccCHHHHHHHHHHHHC
Confidence 4568888999998877643210 00111 123589999999952 1 1112234688899999885
Q ss_pred CCCccEEEechhhhHHHHH
Q psy12875 115 GVTFPVLGVCLGFELILQV 133 (308)
Q Consensus 115 g~~~PvlGIC~G~Qll~~~ 133 (308)
+ +||.+||.|.++|+.+
T Consensus 95 ~--k~i~aiC~G~~~La~a 111 (168)
T 3l18_A 95 D--KPVASICHGPQILISA 111 (168)
T ss_dssp T--CCEEEETTTHHHHHHT
T ss_pred C--CEEEEECHhHHHHHHC
Confidence 5 9999999999999976
No 68
>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2
Probab=97.43 E-value=0.00035 Score=59.52 Aligned_cols=80 Identities=16% Similarity=0.287 Sum_probs=55.6
Q ss_pred HHHHHHHHcCCeEEEEEcCCC---------------hhHHHH-hcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHH
Q psy12875 48 SYVKNIEAAGARVVPILIGQD---------------REYYAE-ILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKI 111 (308)
Q Consensus 48 ~~~~~l~~aG~~~~~i~~~~~---------------~~~~~~-~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~ 111 (308)
...+.|+++|+++..+..... +..+++ ....+|+|++|||... + ........+.++++++
T Consensus 20 ~~~~~l~~ag~~v~~vs~~~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpGG~~~--~--~~l~~~~~l~~~l~~~ 95 (205)
T 2ab0_A 20 TTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADGEYDVIVLPGGIKG--A--ECFRDSTLLVETVKQF 95 (205)
T ss_dssp HHHHHHHHTTCEEEEEECSSTTCCEEECTTSCEEECSEEHHHHTTSCCSEEEECCCHHH--H--HHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHCCCEEEEEeCCCCCCceeecCCCeEEecCCCHHHCCcccCCEEEECCCccc--H--HHhccCHHHHHHHHHH
Confidence 346889999999888765432 112333 2367999999999410 1 1112234688899998
Q ss_pred HHcCCCccEEEechhh-hHHHHH
Q psy12875 112 NEEGVTFPVLGVCLGF-ELILQV 133 (308)
Q Consensus 112 ~~~g~~~PvlGIC~G~-Qll~~~ 133 (308)
.+++ +||.+||.|. ++|+.+
T Consensus 96 ~~~g--k~i~aiC~G~~~lLa~a 116 (205)
T 2ab0_A 96 HRSG--RIVAAICAAPATVLVPH 116 (205)
T ss_dssp HHTT--CEEEEETHHHHHHTTTT
T ss_pred HHcC--CEEEEECHhHHHHHHHC
Confidence 8855 9999999999 999865
No 69
>3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase, peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa}
Probab=97.39 E-value=0.00041 Score=69.07 Aligned_cols=82 Identities=16% Similarity=0.112 Sum_probs=58.5
Q ss_pred HHHHHHHHcCCeEEEEEcCCChh---HHHH-hcCCCCEEEEcCCCCCCC-----CCCchhHHHHHHHHHHHHHHHcCCCc
Q psy12875 48 SYVKNIEAAGARVVPILIGQDRE---YYAE-ILTQINGVVIPGGGTGFD-----HPNGYADAGRQILHLVDKINEEGVTF 118 (308)
Q Consensus 48 ~~~~~l~~aG~~~~~i~~~~~~~---~~~~-~l~~~dGlilpGG~~~~~-----~~~~~~~~~~~~~e~~~~~~~~g~~~ 118 (308)
...++|+++|+.+.++....... .+.. ....+|+|++|||..... + +..+....+.++++++++++ |
T Consensus 556 ~p~~aL~~aGa~V~vVsp~~g~GvD~t~~~~~s~~fDAVvlPGG~~~~~~~~~~~--d~Lr~~~~a~~fV~e~~~hg--K 631 (688)
T 3ej6_A 556 ALKEQLEKDGLKVTVIAEYLASGVDQTYSAADATAFDAVVVAEGAERVFSGKGAM--SPLFPAGRPSQILTDGYRWG--K 631 (688)
T ss_dssp HHHHHHHHTTCEEEEEESSCCTTCCEETTTCCGGGCSEEEECTTCCTTTSTTTTC--CTTSCTTHHHHHHHHHHHTT--C
T ss_pred HHHHHHHHCCCEEEEEeCCCCCCcccCcccCChhcCcEEEECCCcccccccccch--hhhccCHHHHHHHHHHHHcC--C
Confidence 56799999999999997643210 1111 234689999999964310 1 12333347889999999965 9
Q ss_pred cEEEechhhhHHHHH
Q psy12875 119 PVLGVCLGFELILQV 133 (308)
Q Consensus 119 PvlGIC~G~Qll~~~ 133 (308)
||.+||.|.++|..+
T Consensus 632 pIAAIchgp~lL~~A 646 (688)
T 3ej6_A 632 PVAAVGSAKKALQSI 646 (688)
T ss_dssp CEEEEGGGHHHHHHT
T ss_pred EEEEeCccHHHHHHc
Confidence 999999999999977
No 70
>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster}
Probab=97.39 E-value=0.00058 Score=57.35 Aligned_cols=99 Identities=13% Similarity=0.177 Sum_probs=64.0
Q ss_pred CCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCC-Ch------------hHHHHh-cCCCCEE
Q psy12875 17 DTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQ-DR------------EYYAEI-LTQINGV 82 (308)
Q Consensus 17 ~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~-~~------------~~~~~~-l~~~dGl 82 (308)
|...|+|+..+... ...+ ....+.|+++|.++..+.... .. ..+++. ...+|.|
T Consensus 4 m~kkv~ill~~g~~----------~~e~--~~~~~~l~~ag~~v~~~s~~~~~~v~~~~g~~i~~d~~l~~~~~~~~D~l 71 (190)
T 4e08_A 4 MSKSALVILAPGAE----------EMEF--IIAADVLRRAGIKVTVAGLNGGEAVKCSRDVQILPDTSLAQVASDKFDVV 71 (190)
T ss_dssp CCCEEEEEECTTCC----------HHHH--HHHHHHHHHTTCEEEEEESSSSSCEECTTSCEEECSEETGGGTTCCCSEE
T ss_pred CCcEEEEEECCCch----------HHHH--HHHHHHHHHCCCEEEEEECCCCcceecCCCcEEECCCCHHHCCcccCCEE
Confidence 45678887664321 1112 244688999999998887653 11 012221 2468999
Q ss_pred EEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875 83 VIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQV 133 (308)
Q Consensus 83 ilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~ 133 (308)
++|||... . ........+.++++++.+++ +||.+||.|.++|+.+
T Consensus 72 ivpGG~~~--~--~~~~~~~~~~~~l~~~~~~~--k~i~aiC~G~~~La~a 116 (190)
T 4e08_A 72 VLPGGLGG--S--NAMGESSLVGDLLRSQESGG--GLIAAICAAPTVLAKH 116 (190)
T ss_dssp EECCCHHH--H--HHHHHCHHHHHHHHHHHHTT--CEEEEETTTHHHHHHT
T ss_pred EECCCChH--H--HHhhhCHHHHHHHHHHHHCC--CEEEEECHHHHHHHHC
Confidence 99999310 0 01122346888899988855 9999999999999876
No 71
>3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A {Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A* 3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A* 4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A* 1gg9_A* 1ggf_A* ...
Probab=97.39 E-value=0.00035 Score=70.06 Aligned_cols=100 Identities=11% Similarity=0.105 Sum_probs=67.4
Q ss_pred CCCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCCh------------hHHHH-hcCCCCEE
Q psy12875 16 TDTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDR------------EYYAE-ILTQINGV 82 (308)
Q Consensus 16 ~~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~------------~~~~~-~l~~~dGl 82 (308)
.+...|+|+...... ...+ ...++.|+++|+.+.++...... ..+.. ....+|+|
T Consensus 598 i~grKVaILlaDGfE----------e~El--~~pvdaLr~AG~~V~vVS~~~g~V~gs~G~~V~aD~t~~~v~s~~fDAL 665 (753)
T 3ttv_A 598 VKGRVVAILLNDEVR----------SADL--LAILKALKAKGVHAKLLYSRMGEVTADDGTVLPIAATFAGAPSLTVDAV 665 (753)
T ss_dssp CTTCEEEEECCTTCC----------HHHH--HHHHHHHHHHTCEEEEEESSSSEEECTTSCEEECCEETTTSCGGGCSEE
T ss_pred CCCCEEEEEecCCCC----------HHHH--HHHHHHHHHCCCEEEEEEcCCCeEEeCCCCEEecccchhhCCCcCCCEE
Confidence 334578888765322 1112 35679999999999988654321 01111 12348999
Q ss_pred EEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHHhc
Q psy12875 83 VIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQVSN 135 (308)
Q Consensus 83 ilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~~~ 135 (308)
++|||+. ...+....+.++++++.+++ +||.+||.|.++|+.+.+
T Consensus 666 VVPGGg~------~~Lr~d~~vl~~Vre~~~~g--KpIAAIC~Gp~lLa~AGL 710 (753)
T 3ttv_A 666 IVPCGNI------ADIADNGDANYYLMEAYKHL--KPIALAGDARKFKATIKI 710 (753)
T ss_dssp EECCSCG------GGTTTCHHHHHHHHHHHHTT--CCEEEEGGGGGGGGGGTC
T ss_pred EECCCCh------HHhhhCHHHHHHHHHHHhcC--CeEEEECchHHHHHHcCC
Confidence 9999932 23333457889999999965 999999999999998733
No 72
>1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A 2wjz_B
Probab=97.38 E-value=3.2e-05 Score=65.73 Aligned_cols=40 Identities=30% Similarity=0.502 Sum_probs=29.3
Q ss_pred ceeeecCCCCcc----------hhhhHhhh-cCCCCeeeeehhHHHHHHHhC
Q psy12875 152 NLKFLPGAKRSS----------LFSQINEE-GVTFPVLGVCLGFELILQVSN 192 (308)
Q Consensus 152 ~l~~~pg~~~~~----------~~~~i~~~-~~~~PilGiClG~Qll~~~~G 192 (308)
.+.+ ||++.+. ....+++. ..++|+||||+|||+|+.++|
T Consensus 45 glil-pG~g~~~~~~~~l~~~~~~~~i~~~~~~~~PilGIC~G~Qll~~~~g 95 (201)
T 1gpw_B 45 LLFI-PGVGHFGEGMRRLRENDLIDFVRKHVEDERYVVGVCLGMQLLFEESE 95 (201)
T ss_dssp EEEE-CCCSCSHHHHHHHHHTTCHHHHHHHHHTTCEEEEETHHHHTTSSEET
T ss_pred EEEE-CCCCcHHHHHHHHHhhCHHHHHHHHHHcCCeEEEEChhHHHHHHhhc
Confidence 4555 8977653 12344443 568999999999999999997
No 73
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}
Probab=97.37 E-value=7.2e-05 Score=72.28 Aligned_cols=47 Identities=26% Similarity=0.412 Sum_probs=36.9
Q ss_pred cceeeecCCCCcch---hhhHhhh-cCCCCeeeeehhHHHHHHHhCCcccc
Q psy12875 151 LNLKFLPGAKRSSL---FSQINEE-GVTFPVLGVCLGFELILQVSNNDTDF 197 (308)
Q Consensus 151 ~~l~~~pg~~~~~~---~~~i~~~-~~~~PilGiClG~Qll~~~~G~~v~~ 197 (308)
..+.+.+|++.+.. ...++.. ..++|+||||+|||+|+.++|+++..
T Consensus 352 DgIIlpGG~G~~~~~g~i~~ir~a~~~~~PiLGIClG~Qll~va~Gg~v~g 402 (535)
T 3nva_A 352 NGIIVLPGFGSRGAEGKIKAIKYAREHNIPFLGICFGFQLSIVEFARDVLG 402 (535)
T ss_dssp SEEEECCCCSSTTHHHHHHHHHHHHHHTCCEEEETHHHHHHHHHHHHTTTC
T ss_pred CEEEECCCCCCccHHHHHHHHHHHHHcCCcEEEECcchhHHHHHhhccccC
Confidence 46888888887653 3445443 46899999999999999999999853
No 74
>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans}
Probab=97.30 E-value=0.00033 Score=58.74 Aligned_cols=99 Identities=21% Similarity=0.315 Sum_probs=61.9
Q ss_pred CCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCCh-----------------hHHHH-hcCC
Q psy12875 17 DTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDR-----------------EYYAE-ILTQ 78 (308)
Q Consensus 17 ~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~-----------------~~~~~-~l~~ 78 (308)
....|+|+..+... ...+ ....+.|+++|+++..+...... ..+++ ....
T Consensus 8 ~~~~v~il~~~g~~----------~~e~--~~~~~~l~~ag~~v~~vs~~~~~v~~~~~~~~~g~~v~~~~~~~~~~~~~ 75 (190)
T 2vrn_A 8 TGKKIAILAADGVE----------EIEL--TSPRAAIEAAGGTTELISLEPGEIQSMKGDIEPQEKYRVDHVVSEVQVSD 75 (190)
T ss_dssp TTCEEEEECCTTCB----------HHHH--HHHHHHHHHTTCEEEEEESSSSEEEEEETTTEEEEEEECSEEGGGCCGGG
T ss_pred CCCEEEEEeCCCCC----------HHHH--HHHHHHHHHCCCEEEEEecCCCccccccccccCCcEEeCCCChhhCChhh
Confidence 34678988764321 0112 23467888999888777543210 01111 1247
Q ss_pred CCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875 79 INGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQV 133 (308)
Q Consensus 79 ~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~ 133 (308)
+|+|++|||... . ........+.++++++.+++ +||.+||.|.++|+.+
T Consensus 76 ~D~livpGG~~~--~--~~~~~~~~l~~~l~~~~~~g--k~i~aiC~G~~~La~a 124 (190)
T 2vrn_A 76 YDGLLLPGGTVN--P--DKLRLEEGAMKFVRDMYDAG--KPIAAICHGPWSLSET 124 (190)
T ss_dssp CSEEEECCCTHH--H--HHHTTCHHHHHHHHHHHHTT--CCEEEC-CTTHHHHHT
T ss_pred CCEEEECCCchh--H--HHHhhCHHHHHHHHHHHHcC--CEEEEECHhHHHHHhC
Confidence 899999999411 1 01112346888999988855 9999999999999976
No 75
>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} SCOP: c.23.16.0
Probab=97.14 E-value=0.00074 Score=57.68 Aligned_cols=103 Identities=16% Similarity=0.192 Sum_probs=63.9
Q ss_pred cccCCCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCC-Chh------------HHHH-hcCC
Q psy12875 13 VTSTDTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQ-DRE------------YYAE-ILTQ 78 (308)
Q Consensus 13 ~~~~~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~-~~~------------~~~~-~l~~ 78 (308)
|+..|.+.|+|+..+... ...+ ....+.|+++|.++..+.... ... .+++ ....
T Consensus 4 ~~~~m~~~v~ill~~g~~----------~~e~--~~~~~~l~~ag~~v~~vs~~g~~~v~~~~G~~v~~d~~l~~~~~~~ 71 (208)
T 3ot1_A 4 MEQGMSKRILVPVAHGSE----------EMET--VIIVDTLVRAGFQVTMAAVGDKLQVQGSRGVWLTAEQTLEACSAEA 71 (208)
T ss_dssp -----CCEEEEEECTTCC----------HHHH--HHHHHHHHHTTCEEEEEESSSCSEEECTTSCEEECSEEGGGCCGGG
T ss_pred cccccCCeEEEEECCCCc----------HHHH--HHHHHHHHHCCCEEEEEEcCCCcceecCCCcEEeCCCCHHHCCCcC
Confidence 455566789998775432 0112 244688899999988887642 110 1122 1247
Q ss_pred CCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhh-hHHHHH
Q psy12875 79 INGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGF-ELILQV 133 (308)
Q Consensus 79 ~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~-Qll~~~ 133 (308)
+|.|++|||... . ........+.++++++.+++ +||.+||.|. .+|+.+
T Consensus 72 ~D~livpGG~~~--~--~~l~~~~~l~~~l~~~~~~g--k~i~aiC~G~a~~La~a 121 (208)
T 3ot1_A 72 FDALALPGGVGG--A--QAFADSTALLALIDAFSQQG--KLVAAICATPALVFAKQ 121 (208)
T ss_dssp CSEEEECCCHHH--H--HHHHTCHHHHHHHHHHHHTT--CEEEEETTHHHHTTTTT
T ss_pred CCEEEECCCchH--H--HHHhhCHHHHHHHHHHHHcC--CEEEEEChhHHHHHHHC
Confidence 899999999410 0 11122347888999999855 9999999999 888865
No 76
>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1
Probab=96.99 E-value=0.00018 Score=61.07 Aligned_cols=118 Identities=19% Similarity=0.345 Sum_probs=71.4
Q ss_pred ceeeecCCCCcc----------hhhhHhhh-cCCCCeeeeehhHHHHHHH---hC---------CcccccCCcccceeee
Q psy12875 152 NLKFLPGAKRSS----------LFSQINEE-GVTFPVLGVCLGFELILQV---SN---------NDTDFRKSCKVQQVNL 208 (308)
Q Consensus 152 ~l~~~pg~~~~~----------~~~~i~~~-~~~~PilGiClG~Qll~~~---~G---------~~v~~~~~g~~~~~~~ 208 (308)
.+.+ ||++.+. ....+++. ..++|+||||+|||+|+.+ +| +++.+.+..+...+++
T Consensus 43 ~lil-~G~g~~~~~~~~l~~~~~~~~i~~~~~~~~PilGIC~G~Qll~~~~~~~Gg~~~l~~~~g~v~~~~~~~~~~~G~ 121 (200)
T 1ka9_H 43 LLVL-PGQGHFGQVMRAFQESGFVERVRRHLERGLPFLGICVGMQVLYEGSEEAPGVRGLGLVPGEVRRFRAGRVPQMGW 121 (200)
T ss_dssp EEEE-CCCSCHHHHHHTTSSSCTHHHHHHHHHTTCCEEECTHHHHTTSSEETTSTTCCCCCSSSSEEEECCSSSSSEEEE
T ss_pred EEEE-CCCCcHHHHHHHHHhcCHHHHHHHHHHcCCeEEEEcHHHHHHHHhccccCCcCCccccccEEEECCCCCCCceeE
Confidence 4555 8877653 23344443 5689999999999999999 57 4554432001223343
Q ss_pred cccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEecCCCEEEE
Q psy12875 209 NLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEYPIVGI 288 (308)
Q Consensus 209 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~~~p~~Gv 288 (308)
+.... .+ . +.+++. . .++++|++.+ + +++. ++ |++++.+.+ ++++.+++ +++|+
T Consensus 122 ~~v~~--~~--~-l~~~~~-~--------~~~~~Hs~~~-~-------~~~~-~v-a~s~~~g~~-~~~~~~~~-~i~gv 175 (200)
T 1ka9_H 122 NALEF--GG--A-FAPLTG-R--------HFYFANSYYG-P-------LTPY-SL-GKGEYEGTP-FTALLAKE-NLLAP 175 (200)
T ss_dssp EECEE--CG--G-GGGGTT-C--------EEEEEESEEC-C-------CCTT-CC-EEEEETTEE-EEEEEECS-SEEEE
T ss_pred EEEEe--ch--h-hhcCCC-C--------CEEEeccccc-C-------CCCC-cE-EEEEeCCeE-EEEEEeeC-CEEEE
Confidence 21111 11 2 443332 2 3588999998 4 2333 56 887661223 55667666 89999
Q ss_pred eecCCccC
Q psy12875 289 QFHPEKNA 296 (308)
Q Consensus 289 QFHPE~~~ 296 (308)
|||||++.
T Consensus 176 QfHPE~~~ 183 (200)
T 1ka9_H 176 QFHPEKSG 183 (200)
T ss_dssp SSCTTSSH
T ss_pred ecCCCcCc
Confidence 99999985
No 77
>2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.98 E-value=0.00014 Score=61.07 Aligned_cols=29 Identities=10% Similarity=0.273 Sum_probs=23.5
Q ss_pred hHhhh-cCC-CCeeeeehhHHHHHHHhCC-cc
Q psy12875 167 QINEE-GVT-FPVLGVCLGFELILQVSNN-DT 195 (308)
Q Consensus 167 ~i~~~-~~~-~PilGiClG~Qll~~~~G~-~v 195 (308)
.+++. ..+ +|+||||+|||+|+.++|+ ++
T Consensus 65 ~i~~~~~~~~~PilGiC~G~Q~l~~~~gg~~~ 96 (191)
T 2ywd_A 65 EVRKRVEEGSLALFGTCAGAIWLAKEIVGYPE 96 (191)
T ss_dssp HHHHHHHTTCCEEEEETHHHHHHEEEETTCTT
T ss_pred HHHHHHHCCCCeEEEECHHHHHHHHHhCCCCC
Confidence 44443 457 9999999999999999998 54
No 78
>3efe_A THIJ/PFPI family protein; structural GEN csgid, center for structural genomics of infectious disease chaperone; 2.30A {Bacillus anthracis}
Probab=96.97 E-value=0.0027 Score=54.29 Aligned_cols=96 Identities=16% Similarity=0.229 Sum_probs=61.6
Q ss_pred CCEEEEeccccCCCCcccccCCCCccchHHHHHHHHH--------HcCCeEEEEEcCCCh------------hHHHH-hc
Q psy12875 18 TPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIE--------AAGARVVPILIGQDR------------EYYAE-IL 76 (308)
Q Consensus 18 ~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~--------~aG~~~~~i~~~~~~------------~~~~~-~l 76 (308)
...|+|+..+.... ..+ ....+.|+ +.|.++..+...... ..+++ ..
T Consensus 5 m~~v~ill~~g~~~----------~e~--~~~~~~l~~a~~~~~~~~~~~v~~vs~~~~~v~~~~G~~i~~d~~~~~~~~ 72 (212)
T 3efe_A 5 TKKAFLYVFNTMSD----------WEY--GYLIAELNSGRYFKKDLAPLKVITVGANKEMITTMGGLRIKPDISLDECTL 72 (212)
T ss_dssp CCCEEEEECTTCCT----------TTT--HHHHHHHHHCTTSCTTCCCCCEEEEESSSCCEECTTCCEECCSEEGGGCCC
T ss_pred ccEEEEEECCCccH----------HHH--HHHHHHHHhhhccccCCCCeEEEEEECCCCeEEcCCCCEEecCcCHHHCCc
Confidence 35688887764320 112 13456777 567788777654221 01111 12
Q ss_pred CCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875 77 TQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQV 133 (308)
Q Consensus 77 ~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~ 133 (308)
+.+|.|++|||.. .. ......+.++++++.+++ ++|.+||.|..+|+.+
T Consensus 73 ~~~D~livpGG~~-~~-----~~~~~~l~~~l~~~~~~g--k~iaaiC~G~~~La~a 121 (212)
T 3efe_A 73 ESKDLLILPGGTT-WS-----EEIHQPILERIGQALKIG--TIVAAICGATDALANM 121 (212)
T ss_dssp CTTCEEEECCCSC-TT-----SGGGHHHHHHHHHHHHHT--CEEEEETHHHHHHHHT
T ss_pred cCCCEEEECCCCc-cc-----cccCHHHHHHHHHHHHCC--CEEEEEcHHHHHHHHc
Confidence 3799999999963 11 122347888999988865 9999999999999876
No 79
>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1
Probab=96.95 E-value=0.00015 Score=62.66 Aligned_cols=45 Identities=18% Similarity=0.342 Sum_probs=31.5
Q ss_pred ceeeecCCCCcc--------hhhhHhhh-cCCCCeeeeehhHHHHHHHhCCccc
Q psy12875 152 NLKFLPGAKRSS--------LFSQINEE-GVTFPVLGVCLGFELILQVSNNDTD 196 (308)
Q Consensus 152 ~l~~~pg~~~~~--------~~~~i~~~-~~~~PilGiClG~Qll~~~~G~~v~ 196 (308)
.+.+..|+.... ....+++. ..++|+||||+|+|+|+.++|+++.
T Consensus 63 glil~GG~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~QlL~~~~gg~~~ 116 (219)
T 1q7r_A 63 GLVLPGGESTTMRRLIDRYGLMEPLKQFAAAGKPMFGTCAGLILLAKRIVGYDE 116 (219)
T ss_dssp EEEECCCCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEETTHHHHHEEEEESSCC
T ss_pred EEEECCCChHHHHHHhhhhHHHHHHHHHHHcCCeEEEECHHHHHHHHHhCCCCc
Confidence 466666654321 13344443 5689999999999999999998763
No 80
>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}
Probab=96.91 E-value=0.0013 Score=61.76 Aligned_cols=101 Identities=18% Similarity=0.362 Sum_probs=66.3
Q ss_pred ccCCCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCCh------------------------
Q psy12875 14 TSTDTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDR------------------------ 69 (308)
Q Consensus 14 ~~~~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~------------------------ 69 (308)
...+...|+|+..+... ...+ ....+.|+++|+++..+..+...
T Consensus 201 ~~~~~~ki~ill~dg~~----------~~e~--~~~~~~l~~ag~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 268 (396)
T 3uk7_A 201 ITGANKRILFLCGDYME----------DYEV--KVPFQSLQALGCQVDAVCPEKKAGDRCPTAIHDFEGDQTYSEKPGHT 268 (396)
T ss_dssp EECCCCEEEEECCTTEE----------HHHH--HHHHHHHHHHTCEEEEECTTCCTTCEECEEEEECCSSSSCEEEECCC
T ss_pred chhccceEEEEecCCCc----------chhH--HHHHHHHHHCCCEEEEECCCCCCCcccccccccccccchhhhcCCce
Confidence 34456789998775322 0111 24568889999998877543210
Q ss_pred ----hHHHH-hcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875 70 ----EYYAE-ILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQV 133 (308)
Q Consensus 70 ----~~~~~-~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~ 133 (308)
..++. ....+|.|++|||.. + ......+.+.++++++.+++ +||.+||.|.++|+.+
T Consensus 269 i~~~~~~~~~~~~~~D~livpGg~~---~--~~~~~~~~~~~~l~~~~~~~--~~i~aiC~g~~~La~a 330 (396)
T 3uk7_A 269 FALTTNFDDLVSSSYDALVIPGGRA---P--EYLALNEHVLNIVKEFMNSE--KPVASICHGQQILAAA 330 (396)
T ss_dssp EECCSCGGGCCGGGCSEEEECCBSH---H--HHHTTCHHHHHHHHHHHHTT--CCEEEEGGGHHHHHHT
T ss_pred eeccCCHHHCCcccCCEEEECCCcc---h--hhhccCHHHHHHHHHHHHCC--CEEEEEchHHHHHHHc
Confidence 01222 134799999999951 1 12222347888999998855 9999999999999976
No 81
>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0
Probab=96.91 E-value=0.0011 Score=58.32 Aligned_cols=51 Identities=14% Similarity=0.234 Sum_probs=38.4
Q ss_pred CCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875 77 TQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQV 133 (308)
Q Consensus 77 ~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~ 133 (308)
+.+|+|++|||.... ........+.++++++.+++ +||.+||.|..+|+.+
T Consensus 104 ~~yD~l~ipGG~g~~----~~l~~~~~l~~~l~~~~~~g--k~iaaIC~Gp~~La~a 154 (247)
T 3n7t_A 104 HDYGLMFVCGGHGAL----YDFPHAKHLQNIAQDIYKRG--GVIGAVCHGPAMLPGI 154 (247)
T ss_dssp GGCSEEEECCSTTHH----HHGGGCHHHHHHHHHHHHTT--CEEEEETTGGGGGGGC
T ss_pred hhCCEEEEeCCCchh----hhcccCHHHHHHHHHHHHcC--CEEEEEChHHHHHHHh
Confidence 468999999995210 01223357888999999855 9999999999999865
No 82
>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis}
Probab=96.88 E-value=0.0028 Score=54.04 Aligned_cols=94 Identities=12% Similarity=0.190 Sum_probs=60.6
Q ss_pred CEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHc-CCeEEEEEcCCC-----------hhHHHHhcCCCCEEEEcC
Q psy12875 19 PVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAA-GARVVPILIGQD-----------REYYAEILTQINGVVIPG 86 (308)
Q Consensus 19 P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~a-G~~~~~i~~~~~-----------~~~~~~~l~~~dGlilpG 86 (308)
..|+|+..+... .. ..+ ...+.|+++ |.++..+..... +..+++..+.+|.|++||
T Consensus 4 ~kV~ill~~g~~------~~----E~~--~~~~~l~~~~~~~v~~vs~~~~V~~~~G~~v~~d~~l~~~~~~~D~livpG 71 (206)
T 3f5d_A 4 KKALFLILDQYA------DW----EGV--YLASALNQREDWSVHTVSLDPIVSSIGGFKTSVDYIIGLEPANFNLLVMIG 71 (206)
T ss_dssp EEEEEECCSSBC------TT----TSH--HHHHHHHTSTTEEEEEEESSSEEEBTTSCEEECSEETTSSCSCCSEEEECC
T ss_pred cEEEEEEcCCCc------HH----HHH--HHHHHHhccCCeEEEEEECCCCEEecCCcEEecCcChhhCCcCCCEEEEcC
Confidence 568888775432 01 121 335677777 888777654321 001112224789999999
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875 87 GGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQV 133 (308)
Q Consensus 87 G~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~ 133 (308)
|.. +. . ....+.++++++.+++ +||.+||.|.++|+.+
T Consensus 72 G~~---~~--~--~~~~l~~~l~~~~~~g--k~iaaiC~G~~~La~a 109 (206)
T 3f5d_A 72 GDS---WS--N--DNKKLLHFVKTAFQKN--IPIAAICGAVDFLAKN 109 (206)
T ss_dssp BSC---CC--C--CCHHHHHHHHHHHHTT--CCEEEETHHHHHHHHT
T ss_pred CCC---hh--h--cCHHHHHHHHHHHHcC--CEEEEECHHHHHHHHc
Confidence 962 11 1 2347888899888855 9999999999999976
No 83
>3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein struct initiative, midwest center for structural genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron vpi-5482}
Probab=96.86 E-value=0.0011 Score=54.73 Aligned_cols=51 Identities=16% Similarity=0.317 Sum_probs=38.5
Q ss_pred CCCCEEEEcCC--CCCCCCCCchhH---HHHHHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875 77 TQINGVVIPGG--GTGFDHPNGYAD---AGRQILHLVDKINEEGVTFPVLGVCLGFELILQV 133 (308)
Q Consensus 77 ~~~dGlilpGG--~~~~~~~~~~~~---~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~ 133 (308)
..+|.|++||| ..... ... ..+.+.++++++.+++ +||.+||.|.++|+.+
T Consensus 65 ~~~D~livpGG~~~~~~~----~l~~~~~~~~~~~~l~~~~~~g--k~i~aiC~G~~~La~a 120 (175)
T 3cne_A 65 DEFDALVFSCGDAVPVFQ----QYANQPYNVDLMEVIKTFGEKG--KMMIGHCAGAMMFDFT 120 (175)
T ss_dssp GGCSEEEEECCTTGGGGG----GCTTCHHHHHHHHHHHHHHHTT--CEEEEETTHHHHHHHT
T ss_pred ccCCEEEECCCcCcccHH----HHhhcccCHHHHHHHHHHHHCC--CEEEEECHHHHHHHHC
Confidence 57899999999 31111 111 3457889999998855 9999999999999976
No 84
>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*
Probab=96.85 E-value=0.00025 Score=59.83 Aligned_cols=29 Identities=17% Similarity=0.392 Sum_probs=21.9
Q ss_pred hHhhh-cCCCCeeeeehhHHHHHHHhCCcc
Q psy12875 167 QINEE-GVTFPVLGVCLGFELILQVSNNDT 195 (308)
Q Consensus 167 ~i~~~-~~~~PilGiClG~Qll~~~~G~~v 195 (308)
.+++. ..++|++|||+|||+|+.++|+++
T Consensus 64 ~i~~~~~~~~pilgIC~G~q~l~~~~gg~~ 93 (196)
T 2nv0_A 64 PLREFAAQGKPMFGTCAGLIILAKEIAGSD 93 (196)
T ss_dssp HHHHHHHTTCCEEEETHHHHHHSBCCC---
T ss_pred HHHHHHHCCCcEEEECHHHHHHHHHhcCCC
Confidence 44443 568999999999999999999876
No 85
>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A*
Probab=96.82 E-value=0.00088 Score=58.84 Aligned_cols=51 Identities=14% Similarity=0.178 Sum_probs=38.4
Q ss_pred CCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875 77 TQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQV 133 (308)
Q Consensus 77 ~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~ 133 (308)
+.+|+|++|||.... ......+.+.++++++.+++ +||.+||.|..+|+.+
T Consensus 97 ~~yD~l~vpGG~~~~----~~l~~~~~l~~~l~~~~~~g--k~iaaIC~G~~~La~a 147 (244)
T 3kkl_A 97 SDYKVFFASAGHGAL----FDYPKAKNLQDIASKIYANG--GVIAAICHGPLLFDGL 147 (244)
T ss_dssp GGCSEEEECCSTTHH----HHGGGCHHHHHHHHHHHHTT--CEEEEETTGGGGGTTC
T ss_pred hhCCEEEEcCCCchh----hhcccCHHHHHHHHHHHHcC--CEEEEECHHHHHHHHh
Confidence 468999999995210 11223357888999999855 9999999999999865
No 86
>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima}
Probab=96.81 E-value=0.00024 Score=60.71 Aligned_cols=29 Identities=24% Similarity=0.456 Sum_probs=21.8
Q ss_pred hHhhh-cCCCCeeeeehhHHHHHHHhCCcc
Q psy12875 167 QINEE-GVTFPVLGVCLGFELILQVSNNDT 195 (308)
Q Consensus 167 ~i~~~-~~~~PilGiClG~Qll~~~~G~~v 195 (308)
.+++. ..++|+||||+|||+|+.++|+..
T Consensus 83 ~i~~~~~~g~PilGIC~G~QlL~~~~gg~~ 112 (208)
T 2iss_D 83 KLVERINNGLPVFATCAGVILLAKRIKNYS 112 (208)
T ss_dssp HHHHHHHTTCCEEEETHHHHHHEEEEC---
T ss_pred HHHHHHHCCCeEEEECHHHHHHHHHcCCCC
Confidence 34443 568999999999999999999864
No 87
>2abw_A PDX2 protein, glutaminase; PLP-synthase, vitamin B6, malaria, transferase; HET: PG4; 1.62A {Plasmodium falciparum} SCOP: c.23.16.1 PDB: 4ads_G
Probab=96.78 E-value=0.00021 Score=61.83 Aligned_cols=114 Identities=15% Similarity=0.139 Sum_probs=64.0
Q ss_pred hHhhh-cC-CCCeeeeehhHHHHHHHhCCcccccC---CcccceeeecccccCCCC------CCcCccCC----ChhHHH
Q psy12875 167 QINEE-GV-TFPVLGVCLGFELILQVSNNDTDFRK---SCKVQQVNLNLKFLPGAK------RSSLFSQV----PSKYIK 231 (308)
Q Consensus 167 ~i~~~-~~-~~PilGiClG~Qll~~~~G~~v~~~~---~g~~~~~~~~~~~~~~~~------~~~l~~~~----~~~~~~ 231 (308)
.+++. .. ++|+||||+|+|+|+.++|+.+.... .................. ....+.++ +.++
T Consensus 71 ~i~~~~~~~g~PilGIC~G~QlL~~~~gg~~~~~~~~~~~~lG~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~-- 148 (227)
T 2abw_A 71 ALVHFIHVLKKPIWGTCAGCILLSKNVENIKLYSNFGNKFSFGGLDITICRNFYGSQNDSFICSLNIISDSSAFKKDL-- 148 (227)
T ss_dssp HHHHHHHTSCCCEEEETHHHHHTEEEEECCCSCCTTGGGSCCCCEEEEEECCC----CCEEEEECEECCCCTTCCTTC--
T ss_pred HHHHHHHhcCCEEEEECHHHHHHHHHhcCCccccccccccccCceeEEEEecCCCccccccccccccccccccCCCce--
Confidence 34433 56 89999999999999999998753210 111111111100000000 00111221 1112
Q ss_pred hhccCCceeeccceeeeeccccccCC-CCCeEEEEEecCC--CceEEEEEEecCCCEEEEeecCCccCc
Q psy12875 232 KFYQKPLTHNNHIWCITRQDMIKYGL-TETWNILTLSKYK--SWEFVSTVEHKEYPIVGIQFHPEKNAY 297 (308)
Q Consensus 232 ~~~~~~~v~~~H~~~v~~~~~~~~~l-~~~~~via~s~~~--~~~~v~ai~~~~~p~~GvQFHPE~~~~ 297 (308)
..++.|++.+.. + |++++++|+++.+ +...++|++.+ +++|+|||||++..
T Consensus 149 ------~~~~~h~~~v~~-------~~~~~~~vla~~~~~~~g~~~~~a~~~~--~v~gvQfHPE~~~~ 202 (227)
T 2abw_A 149 ------TAACIRAPYIRE-------ILSDEVKVLATFSHESYGPNIIAAVEQN--NCLGTVFHPELLPH 202 (227)
T ss_dssp ------EEEEESCCEEEE-------ECCTTCEEEEEEEETTTEEEEEEEEEET--TEEEESSCGGGSSC
T ss_pred ------eEEEEEcceEee-------cCCCCcEEEEEcccccCCCCceEEEEEC--CEEEEEECCeeCCC
Confidence 125567777653 5 7899999998631 01247788875 59999999998753
No 88
>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}
Probab=96.62 E-value=0.0029 Score=59.28 Aligned_cols=97 Identities=23% Similarity=0.428 Sum_probs=63.7
Q ss_pred CCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCCh----------------------------
Q psy12875 18 TPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDR---------------------------- 69 (308)
Q Consensus 18 ~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~---------------------------- 69 (308)
...|+|+..+... ...+ ....+.|+++|+++..+.....+
T Consensus 12 ~~kv~ill~dg~e----------~~E~--~~~~~~l~~ag~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~ 79 (396)
T 3uk7_A 12 SRTVLILCGDYME----------DYEV--MVPFQALQAFGITVHTVCPGKKAGDSCPTAVHDFCGHQTYFESRGHNFTLN 79 (396)
T ss_dssp CCEEEEECCTTEE----------HHHH--HHHHHHHHHTTCEEEEECTTCCTTCEECEEEEECSSSSSCEEEECCCEECC
T ss_pred CCeEEEEeCCCcc----------HHHH--HHHHHHHHHCCCEEEEEcCCCcCCCcccccccccccchhhhhccCceeecc
Confidence 4678888764321 0111 24568899999998887654210
Q ss_pred hHHHH-hcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875 70 EYYAE-ILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQV 133 (308)
Q Consensus 70 ~~~~~-~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~ 133 (308)
..++. ....+|.|++|||.. + ........+.++++++.+++ +||.+||.|.++|+.+
T Consensus 80 ~~~~~~~~~~~D~livpGG~~---~--~~~~~~~~~~~~l~~~~~~~--~~i~aiC~G~~~La~a 137 (396)
T 3uk7_A 80 ATFDEVDLSKYDGLVIPGGRA---P--EYLALTASVVELVKEFSRSG--KPIASICHGQLILAAA 137 (396)
T ss_dssp SCGGGCCGGGCSEEEECCBSH---H--HHHTTCHHHHHHHHHHHHTT--CCEEEETTTHHHHHHT
T ss_pred CChhhcCcccCCEEEECCCcc---h--hhcccCHHHHHHHHHHHHcC--CEEEEECchHHHHHhc
Confidence 01111 135689999999952 1 11222346888899998855 9999999999999976
No 89
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=96.60 E-value=0.0025 Score=57.39 Aligned_cols=98 Identities=15% Similarity=0.235 Sum_probs=65.6
Q ss_pred CCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCC-eEEEEEcCC----ChhHHHHhcCCCCEEEEcCCCCCCC
Q psy12875 18 TPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGA-RVVPILIGQ----DREYYAEILTQINGVVIPGGGTGFD 92 (308)
Q Consensus 18 ~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~-~~~~i~~~~----~~~~~~~~l~~~dGlilpGG~~~~~ 92 (308)
+|.|.+.+.-+.. .+.|. ..|.+++++.|+ .+..+.... ++.++.+.+.++|+|+++||...
T Consensus 56 ~~~I~~IptAs~~----------~~~~~-~~~~~~f~~lG~~~v~~L~i~~r~~a~~~~~~~~l~~ad~I~v~GGnt~-- 122 (291)
T 3en0_A 56 DAIIGIIPSASRE----------PLLIG-ERYQTIFSDMGVKELKVLDIRDRAQGDDSGYRLFVEQCTGIFMTGGDQL-- 122 (291)
T ss_dssp GCEEEEECTTCSS----------HHHHH-HHHHHHHHHHCCSEEEECCCCSGGGGGCHHHHHHHHHCSEEEECCSCHH--
T ss_pred CCeEEEEeCCCCC----------hHHHH-HHHHHHHHHcCCCeeEEEEecCccccCCHHHHHHHhcCCEEEECCCCHH--
Confidence 4788888664432 23454 467889999999 666666532 12234456778999999999520
Q ss_pred CCCchhHHH--HHHHHHHHHHHHcCCCccEEEechhhhHHHH
Q psy12875 93 HPNGYADAG--RQILHLVDKINEEGVTFPVLGVCLGFELILQ 132 (308)
Q Consensus 93 ~~~~~~~~~--~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~ 132 (308)
.+.+.. ..+.+.+++++++| +.|+.|+|.|.-++..
T Consensus 123 ---~l~~~l~~t~l~~~L~~~~~~G-~~~~~GtSAGA~i~~~ 160 (291)
T 3en0_A 123 ---RLCGLLADTPLMDRIRQRVHNG-EISLAGTSAGAAVMGH 160 (291)
T ss_dssp ---HHHHHHTTCHHHHHHHHHHHTT-SSEEEEETHHHHTTSS
T ss_pred ---HHHHHHHhCCHHHHHHHHHHCC-CeEEEEeCHHHHhhhH
Confidence 122222 25678888888843 3899999999988764
No 90
>2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium janthinellum} PDB: 2xf2_A*
Probab=96.54 E-value=0.0018 Score=64.56 Aligned_cols=84 Identities=17% Similarity=0.143 Sum_probs=57.3
Q ss_pred HHHHHHHHcCCeEEEEEcCCCh---hHHHH-hcCCCCEEEEcCCCCCCCC------------CCchhHHHHHHHHHHHHH
Q psy12875 48 SYVKNIEAAGARVVPILIGQDR---EYYAE-ILTQINGVVIPGGGTGFDH------------PNGYADAGRQILHLVDKI 111 (308)
Q Consensus 48 ~~~~~l~~aG~~~~~i~~~~~~---~~~~~-~l~~~dGlilpGG~~~~~~------------~~~~~~~~~~~~e~~~~~ 111 (308)
...++|+++|+.++++...... ..+.. ....+|+||+|||...+.. .....+......++++++
T Consensus 549 ~~~~~L~~aG~~V~vVs~~~g~~vD~t~~~~~s~~fDAVvlPGG~~g~~~~~~~~~~~~~~~~~~~L~~~~~~~~~v~~~ 628 (688)
T 2iuf_A 549 KLQVALSSVGVDVVVVAERXANNVDETYSASDAVQFDAVVVADGAEGLFGADSFTVEPSAGSGASTLYPAGRPLNILLDA 628 (688)
T ss_dssp HHHHHHGGGTCEEEEEESSCCTTCCEESTTCCGGGCSEEEECTTCGGGCCTTTTTCCCCTTSCCCSSSCTTHHHHHHHHH
T ss_pred HHHHHHHHCCCEEEEEeccCCcccccchhcCCccccCeEEecCCCcccccccccccccccccchhhcccChHHHHHHHHH
Confidence 5678999999999999765421 01111 2346999999999422000 001222234688899999
Q ss_pred HHcCCCccEEEechhhhHHHHH
Q psy12875 112 NEEGVTFPVLGVCLGFELILQV 133 (308)
Q Consensus 112 ~~~g~~~PvlGIC~G~Qll~~~ 133 (308)
.+.+ +||.+||.|-++|..+
T Consensus 629 ~~~g--KpIaAIc~ap~vL~~a 648 (688)
T 2iuf_A 629 FRFG--KTVGALGSGSDALESG 648 (688)
T ss_dssp HHHT--CEEEEEGGGHHHHHHT
T ss_pred HHcC--CEEEEECchHHHHHHc
Confidence 9966 9999999999988866
No 91
>1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A 1ons_A 1izz_A
Probab=96.34 E-value=0.0054 Score=55.19 Aligned_cols=79 Identities=15% Similarity=0.168 Sum_probs=54.3
Q ss_pred HHHHHHHcCCeEEEEEcCCCh----------------h-------------HHHH------hcCCCCEEEEcCCCCCCCC
Q psy12875 49 YVKNIEAAGARVVPILIGQDR----------------E-------------YYAE------ILTQINGVVIPGGGTGFDH 93 (308)
Q Consensus 49 ~~~~l~~aG~~~~~i~~~~~~----------------~-------------~~~~------~l~~~dGlilpGG~~~~~~ 93 (308)
-.+.|+++|.++.++...... . .+++ ..+.+|+|++|||....
T Consensus 81 p~~vL~~ag~~v~i~S~~g~~v~~d~~s~~~~~~~~~~~~~~~g~~l~~~~~l~~v~~~~~~~~~yD~livPGG~g~~-- 158 (291)
T 1n57_A 81 PLYHLHAAGFEFEVATISGLMTKFEYWAMPHKDEKVMPFFEQHKSLFRNPKKLADVVASLNADSEYAAIFVPGGHGAL-- 158 (291)
T ss_dssp HHHHHHHTTCCEEEEESSSCCCCBCGGGCCTTCTTHHHHHHHHHHHHHSCEEHHHHHHTCCTTCSEEEEEECCSGGGG--
T ss_pred HHHHHHHCCCEEEEEeCCCCcccccccccccccHHHHHHHHhccceecCCccHHHHhhhccCcccCCEEEecCCcchh--
Confidence 457788999999988753211 0 1122 14679999999994211
Q ss_pred CCchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875 94 PNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQV 133 (308)
Q Consensus 94 ~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~ 133 (308)
......+.+.++++++.+++ ++|.+||.|..+|+.+
T Consensus 159 --~~l~~~~~l~~~l~~~~~~g--k~VaaIC~Gp~~La~a 194 (291)
T 1n57_A 159 --IGLPESQDVAAALQWAIKND--RFVISLCHGPAAFLAL 194 (291)
T ss_dssp --SSGGGCHHHHHHHHHHHHTT--CEEEEETTGGGGGGGG
T ss_pred --hhhhhCHHHHHHHHHHHHcC--CEEEEECccHHHHHhh
Confidence 01222357888999988855 9999999999988766
No 92
>1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase; HET: HDD HEM; 1.75A {Neurospora crassa} SCOP: c.23.16.3
Probab=96.21 E-value=0.0095 Score=59.92 Aligned_cols=98 Identities=14% Similarity=0.156 Sum_probs=63.0
Q ss_pred CCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCCh------------hHHHH-hcCCCCEEEE
Q psy12875 18 TPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDR------------EYYAE-ILTQINGVVI 84 (308)
Q Consensus 18 ~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~------------~~~~~-~l~~~dGlil 84 (308)
...|+|+..+... .... ....+.|+.+|+++.++...... ..+.. ....+|+|++
T Consensus 534 ~rkVaILl~dGfe----------~~El--~~p~dvL~~AG~~V~ivS~~gg~V~ss~G~~v~~d~~l~~v~~~~yDaViV 601 (715)
T 1sy7_A 534 SRRVAIIIADGYD----------NVAY--DAAYAAISANQAIPLVIGPRRSKVTAANGSTVQPHHHLEGFRSTMVDAIFI 601 (715)
T ss_dssp TCEEEEECCTTBC----------HHHH--HHHHHHHHHTTCEEEEEESCSSCEEBTTSCEECCSEETTTCCGGGSSEEEE
T ss_pred CCEEEEEEcCCCC----------HHHH--HHHHHHHHhcCCEEEEEECCCCceecCCCceEecccccccCCcccCCEEEE
Confidence 3568888774321 0111 24568899999999888654210 01111 1235899999
Q ss_pred cCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875 85 PGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQV 133 (308)
Q Consensus 85 pGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~ 133 (308)
|||... . ........+.++++++.+++ +||.+||.|..+|+.+
T Consensus 602 PGG~~~--~--~~l~~~~~l~~~Lr~~~~~g--K~IaAIC~G~~lLA~A 644 (715)
T 1sy7_A 602 PGGAKA--A--ETLSKNGRALHWIREAFGHL--KAIGATGEAVDLVAKA 644 (715)
T ss_dssp CCCHHH--H--HHHHTCHHHHHHHHHHHHTT--CEEEEETTHHHHHHHH
T ss_pred cCCccc--H--hhhccCHHHHHHHHHHHhCC--CEEEEECHHHHHHHHc
Confidence 999310 0 11122246888999999855 9999999999999987
No 93
>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2
Probab=96.17 E-value=0.0039 Score=53.52 Aligned_cols=80 Identities=14% Similarity=0.173 Sum_probs=54.2
Q ss_pred HHHHHHHHcCCeEEEEEcCCCh-------------------hHH------HH-hcCCCCEEEEcCCCCCCCCCCchhHHH
Q psy12875 48 SYVKNIEAAGARVVPILIGQDR-------------------EYY------AE-ILTQINGVVIPGGGTGFDHPNGYADAG 101 (308)
Q Consensus 48 ~~~~~l~~aG~~~~~i~~~~~~-------------------~~~------~~-~l~~~dGlilpGG~~~~~~~~~~~~~~ 101 (308)
...+.|+++|+++..+...... ..+ +. ....+|+|++|||..... .....
T Consensus 33 ~p~~~l~~ag~~v~~vs~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~~~D~livpGG~~~~~----~l~~~ 108 (224)
T 1u9c_A 33 VPYLVFQEKGYDVKVASIQGGEVPLDPRSINEKDPSWAEAEAALKHTARLSKDDAHGFDAIFLPGGHGTMF----DFPDN 108 (224)
T ss_dssp HHHHHHHHTTCEEEEEESSCBCCCBCGGGSSSCCGGGHHHHHHTTSBEECCGGGGSSCSEEEECCCTTHHH----HSTTC
T ss_pred HHHHHHHHCCCeEEEECCCCCccccCccccccHHHHHhhhhHhhcCCCChHHcChhhCCEEEECCCcchHH----HhhcC
Confidence 3467888999999888654211 001 11 124799999999952100 01123
Q ss_pred HHHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875 102 RQILHLVDKINEEGVTFPVLGVCLGFELILQV 133 (308)
Q Consensus 102 ~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~ 133 (308)
..+.++++++.+++ +||.+||.|.++|+.+
T Consensus 109 ~~l~~~l~~~~~~~--k~iaaiC~G~~~La~a 138 (224)
T 1u9c_A 109 ETLQYVLQQFAEDG--RIIAAVCHGPSGLVNA 138 (224)
T ss_dssp HHHHHHHHHHHHTT--CEEEEETTGGGGGTTC
T ss_pred HHHHHHHHHHHHCC--CEEEEEChHHHHHHHc
Confidence 47888999988855 9999999999999866
No 94
>2fex_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; 1.70A {Agrobacterium tumefaciens} SCOP: c.23.16.2
Probab=96.15 E-value=0.0016 Score=54.55 Aligned_cols=77 Identities=18% Similarity=0.267 Sum_probs=51.3
Q ss_pred HHHHHHH-cCCeEEEEEcCCCh------------hHHHH-hcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHc
Q psy12875 49 YVKNIEA-AGARVVPILIGQDR------------EYYAE-ILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEE 114 (308)
Q Consensus 49 ~~~~l~~-aG~~~~~i~~~~~~------------~~~~~-~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~ 114 (308)
..+.|++ .|.++..+...... ..+++ ..+.+|+|++|||.. . .......+.++++++.++
T Consensus 20 ~~~~l~~a~~~~v~~vs~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~livpGG~~-~-----~~~~~~~l~~~l~~~~~~ 93 (188)
T 2fex_A 20 LAAAARSYLGVEIVHATPDGMPVTSMGGLKVTPDTSYDALDPVDIDALVIPGGLS-W-----EKGTAADLGGLVKRFRDR 93 (188)
T ss_dssp HHHHHHHHSCCEEEEEETTSSCEECTTCCEEECSEEGGGCCTTTCSEEEECCBSH-H-----HHTCCCCCHHHHHHHHHT
T ss_pred HHHHHhhcCCceEEEEeCCCCceeeCCCcEEeccccHHHCCcccCCEEEECCCCc-c-----cccccHHHHHHHHHHHHC
Confidence 3577777 89888877654210 01111 123789999999952 0 101112567888888885
Q ss_pred CCCccEEEechhhhHHHHH
Q psy12875 115 GVTFPVLGVCLGFELILQV 133 (308)
Q Consensus 115 g~~~PvlGIC~G~Qll~~~ 133 (308)
+ +||.+||.|.++|+.+
T Consensus 94 ~--k~i~aiC~G~~~La~a 110 (188)
T 2fex_A 94 D--RLVAGICAAASALGGT 110 (188)
T ss_dssp T--CEEEEETHHHHHHHHT
T ss_pred C--CEEEEECHHHHHHHHC
Confidence 4 9999999999999976
No 95
>3er6_A Putative transcriptional regulator protein; structural genomics, unknown function, DNA-binding, transcription regulation, PSI-2; 1.90A {Vibrio parahaemolyticus}
Probab=96.07 E-value=0.017 Score=49.09 Aligned_cols=51 Identities=10% Similarity=0.176 Sum_probs=39.2
Q ss_pred cCCCCEEEEcCCCCCCCCCCchh--HHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875 76 LTQINGVVIPGGGTGFDHPNGYA--DAGRQILHLVDKINEEGVTFPVLGVCLGFELILQV 133 (308)
Q Consensus 76 l~~~dGlilpGG~~~~~~~~~~~--~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~ 133 (308)
+..+|.|++|||.. + ... ...+.+.++++++.+++ ++|.+||.|..+|+.+
T Consensus 72 ~~~~D~livpGg~~---~--~~~~~~~~~~l~~~l~~~~~~g--~~iaaIC~G~~~La~a 124 (209)
T 3er6_A 72 FDFTNILIIGSIGD---P--LESLDKIDPALFDWIRELHLKG--SKIVAIDTGIFVVAKA 124 (209)
T ss_dssp CSCCSEEEECCCSC---H--HHHGGGSCHHHHHHHHHHHHTT--CEEEEETTHHHHHHHH
T ss_pred cCCCCEEEECCCCC---c--hhhhccCCHHHHHHHHHHHhcC--CEEEEEcHHHHHHHHc
Confidence 46799999999952 1 111 12357889999988855 9999999999999987
No 96
>3ewn_A THIJ/PFPI family protein; monomer, PSI nysgrc, structural genomics, protein structure initiative; 1.65A {Pseudomonas syringae PV}
Probab=96.07 E-value=0.0097 Score=52.42 Aligned_cols=96 Identities=14% Similarity=0.134 Sum_probs=60.2
Q ss_pred CEEEEeccccCCCCcccccCCCCccchHHHHHHHH-HHcCCeEEEEEcCCCh------------hHHHHhcCCCCEEEEc
Q psy12875 19 PVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNI-EAAGARVVPILIGQDR------------EYYAEILTQINGVVIP 85 (308)
Q Consensus 19 P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l-~~aG~~~~~i~~~~~~------------~~~~~~l~~~dGlilp 85 (308)
..|+|+..+... ..++ ....+.| +..|.++..+...... ..+++....+|.|++|
T Consensus 24 ~~I~ill~~gf~----------~~e~--~~p~dvl~~~~~~~v~~vs~~~~~V~~~~G~~i~~d~~l~~~~~~yD~liVP 91 (253)
T 3ewn_A 24 EQIAMLVYPGMT----------VMDL--VGPHCMFGSLMGAKIYIVAKSLDPVTSDAGLAIVPTATFGTCPRDLTVLFAP 91 (253)
T ss_dssp CEEEEECCTTBC----------HHHH--HHHHHHHTTSTTCEEEEEESSSSCEECTTSCEECCSEETTTSCSSCSEEEEC
T ss_pred eEEEEEeCCCCc----------HHHH--HHHHHHHHhCCCCEEEEEeCCCCeEEcCCCCEEeCCcCHHHcCCCCCEEEEC
Confidence 488988775432 0111 1345667 5678888877654211 0111122346999999
Q ss_pred CCC-CCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875 86 GGG-TGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQV 133 (308)
Q Consensus 86 GG~-~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~ 133 (308)
||. . . ........+.++++++.+++ ++|.+||.|..+|+.+
T Consensus 92 GG~~g---~--~~l~~~~~l~~~Lr~~~~~g--k~IaaICtG~~lLa~A 133 (253)
T 3ewn_A 92 GGTDG---T--LAAASDAETLAFMADRGARA--KYITSVCSGSLILGAA 133 (253)
T ss_dssp CBSHH---H--HHHTTCHHHHHHHHHHHTTC--SEEEEETTHHHHHHHT
T ss_pred CCccc---h--hhhccCHHHHHHHHHHHHcC--CEEEEEChHHHHHHHc
Confidence 984 1 0 01112347889999988855 9999999999999876
No 97
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A
Probab=96.01 E-value=0.0011 Score=65.00 Aligned_cols=39 Identities=23% Similarity=0.433 Sum_probs=28.0
Q ss_pred ceeeecCCCCcc----------hhhhHhhh-cCCCCeeeeehhHHHHHHHh
Q psy12875 152 NLKFLPGAKRSS----------LFSQINEE-GVTFPVLGVCLGFELILQVS 191 (308)
Q Consensus 152 ~l~~~pg~~~~~----------~~~~i~~~-~~~~PilGiClG~Qll~~~~ 191 (308)
.+.+ ||++.+. ....+++. ..++|+||||+|||+|+.++
T Consensus 47 glIL-pGgG~~~~~~~~l~~~~~~~~i~~~~~~g~PiLGIC~G~QlL~~a~ 96 (555)
T 1jvn_A 47 RLIL-PGVGNYGHFVDNLFNRGFEKPIREYIESGKPIMGIXVGLQALFAGS 96 (555)
T ss_dssp CEEE-EECSCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEEEHHHHTTEEEE
T ss_pred EEEE-CCCCchHhHhhhhhhccHHHHHHHHHHcCCcEEEEchhhhhhhhhh
Confidence 4555 8876643 12344443 56899999999999999988
No 98
>4gdh_A DJ-1, uncharacterized protein C22E12.03C; unknown function, cysteine oxidation; 1.05A {Schizosaccharomyces pombe} PDB: 4ge3_A 4ge0_A
Probab=95.94 E-value=0.007 Score=50.99 Aligned_cols=79 Identities=15% Similarity=0.211 Sum_probs=48.6
Q ss_pred HHHHHHHcCCeEEEEEcCCCh------------------hH---HHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHH
Q psy12875 49 YVKNIEAAGARVVPILIGQDR------------------EY---YAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHL 107 (308)
Q Consensus 49 ~~~~l~~aG~~~~~i~~~~~~------------------~~---~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~ 107 (308)
-.+.|+++|..+..+...... ++ .+...+++|+|++|||... + ...+..+.+.++
T Consensus 23 p~~vl~~ag~~v~~~s~~~~~~~~v~~~~g~~v~~d~~~~~~~~~d~~~~~yD~lvvPGG~~~--~--~~l~~~~~l~~~ 98 (194)
T 4gdh_A 23 PWGIFKRAEIPIDSVYVGENKDRLVKMSRDVEMYANRSYKEIPSADDFAKQYDIAIIPGGGLG--A--KTLSTTPFVQQV 98 (194)
T ss_dssp HHHHHHHTTCCEEEEEESSCTTCEEECTTSCEEECSEEGGGSCCHHHHHHHCSEEEECCCHHH--H--HHHHTCHHHHHH
T ss_pred HHHHHHHCCCeEEEEEEcCCCCceEecCCCceeeccccHhhCCccccccccCCEEEECCCchh--H--hHhhhCHHHHHH
Confidence 357889999888766543210 00 1112346899999999310 0 112223467888
Q ss_pred HHHHHHcCCCccEEEechhhhHHHH
Q psy12875 108 VDKINEEGVTFPVLGVCLGFELILQ 132 (308)
Q Consensus 108 ~~~~~~~g~~~PvlGIC~G~Qll~~ 132 (308)
++++.++ .++++..||.|..++..
T Consensus 99 l~~~~~~-~~k~iaaiC~g~~l~~a 122 (194)
T 4gdh_A 99 VKEFYKK-PNKWIGMICAGTLTAKT 122 (194)
T ss_dssp HHHHTTC-TTCEEEEEGGGGHHHHH
T ss_pred HHHhhhc-CCceEEeecccccchhh
Confidence 8887764 24899999999855443
No 99
>3gra_A Transcriptional regulator, ARAC family; transcription regulator, PSI-II, structural genomics structure initiative; 2.30A {Pseudomonas putida}
Probab=95.82 E-value=0.0066 Score=51.46 Aligned_cols=49 Identities=16% Similarity=0.228 Sum_probs=38.8
Q ss_pred cCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875 76 LTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQV 133 (308)
Q Consensus 76 l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~ 133 (308)
...+|.|++|||... .. .. ..+.++++++.+++ ++|.+||-|..+|+.+
T Consensus 69 ~~~~D~livpGG~~~-~~----~~--~~l~~~l~~~~~~g--~~iaaIC~G~~~La~a 117 (202)
T 3gra_A 69 LKELDLLVVCGGLRT-PL----KY--PELDRLLNDCAAHG--MALGGLWNGAWFLGRA 117 (202)
T ss_dssp GTTCSEEEEECCTTC-CS----CC--TTHHHHHHHHHHHT--CEEEEETTHHHHHHHH
T ss_pred CCCCCEEEEeCCCch-hh----cc--HHHHHHHHHHHhhC--CEEEEECHHHHHHHHc
Confidence 467999999999632 11 11 56788888888865 9999999999999987
No 100
>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A
Probab=95.79 E-value=0.0036 Score=54.68 Aligned_cols=51 Identities=14% Similarity=0.152 Sum_probs=38.0
Q ss_pred CCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875 77 TQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQV 133 (308)
Q Consensus 77 ~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~ 133 (308)
+++|+|++|||.... ......+.+.++++++.+++ +||.+||.|..+|+.+
T Consensus 97 ~~~D~livpGG~~~~----~~l~~~~~l~~~l~~~~~~g--k~vaaIC~G~~~La~a 147 (243)
T 1rw7_A 97 DDYQIFFASAGHGTL----FDYPKAKDLQDIASEIYANG--GVVAAVCHGPAIFDGL 147 (243)
T ss_dssp GGEEEEEECCSTTHH----HHGGGCHHHHHHHHHHHHTT--CEEEEETTGGGGGTTC
T ss_pred hhCcEEEECCCCCch----hhcccCHHHHHHHHHHHHcC--CEEEEECCCHHHHHhc
Confidence 368999999995210 01122347888999988855 9999999999998876
No 101
>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima}
Probab=95.53 E-value=0.0046 Score=52.49 Aligned_cols=34 Identities=15% Similarity=0.338 Sum_probs=26.7
Q ss_pred hhhHhhh-cCCCCeeeeehhHHHHHHH--hCCccccc
Q psy12875 165 FSQINEE-GVTFPVLGVCLGFELILQV--SNNDTDFR 198 (308)
Q Consensus 165 ~~~i~~~-~~~~PilGiClG~Qll~~~--~G~~v~~~ 198 (308)
...+++. ..++|++|||+|+|+|+.+ +++++.+.
T Consensus 69 ~~~l~~~~~~~~pilgIC~G~qlLa~aGll~g~v~~~ 105 (213)
T 3d54_D 69 AFEIAKAAERGKLIMGICNGFQILIEMGLLKGALLQN 105 (213)
T ss_dssp HHHHHHHHHHTCEEEECHHHHHHHHHHTSSCSEEECC
T ss_pred HHHHHHHHHCCCEEEEECHHHHHHHHcCCCCCCeecC
Confidence 4455543 4689999999999999999 88887653
No 102
>2vdj_A Homoserine O-succinyltransferase; methionine biosynthesis, amino-acid biosynthesis, homoserine transacetylase, homoserine transsuccinylase; 2.00A {Bacillus cereus} PDB: 2ghr_A
Probab=95.22 E-value=0.0053 Score=55.53 Aligned_cols=23 Identities=17% Similarity=0.117 Sum_probs=19.1
Q ss_pred cCCCCeeeeehhHHHHHHHhCCc
Q psy12875 172 GVTFPVLGVCLGFELILQVSNND 194 (308)
Q Consensus 172 ~~~~PilGiClG~Qll~~~~G~~ 194 (308)
...+|+||||+|||+++.++||.
T Consensus 133 ~~~~~~lgIC~GaQ~~l~~~~G~ 155 (301)
T 2vdj_A 133 TNVTSTLHICWGAQAGLYHHYGV 155 (301)
T ss_dssp HHEEEEEEETHHHHHHHHHHHCC
T ss_pred HcCCcEEEEcHHHHHHHHHhCCC
Confidence 46889999999999977776663
No 103
>3noq_A THIJ/PFPI family protein; DJ-1 superfamily, isocyanide hydratase, isonitrIle hydratase; HET: NHE; 1.00A {Pseudomonas fluorescens} PDB: 3noo_A 3non_A 3nor_A* 3nov_A
Probab=95.16 E-value=0.018 Score=49.90 Aligned_cols=97 Identities=16% Similarity=0.129 Sum_probs=60.5
Q ss_pred CCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHH-cCCeEEEEEcCCCh------------hHHHHhcCCCCEEE
Q psy12875 17 DTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEA-AGARVVPILIGQDR------------EYYAEILTQINGVV 83 (308)
Q Consensus 17 ~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~-aG~~~~~i~~~~~~------------~~~~~~l~~~dGli 83 (308)
|...|+|+..+.-. ..++ ....+.|+. .|.++..+...... ..++ .+..+|.|+
T Consensus 4 m~~~V~ill~~gf~----------~~e~--~~p~evl~~~~~~~v~~vs~~~~~V~~~~G~~v~~d~~l~-~~~~~D~li 70 (231)
T 3noq_A 4 MAVQIGFLLFPEVQ----------QLDL--TGPHDVLASLPDVQVHLIWKEPGPVVASSGLVLQATTSFA-DCPPLDVIC 70 (231)
T ss_dssp CCEEEEEECCTTCC----------HHHH--HHHHHHHTTSTTEEEEEEESSSEEEECTTSCEEEECEETT-TCCCCSEEE
T ss_pred CcEEEEEEEeCCCc----------HHHH--HHHHHHHHcCCCCEEEEEECCCCcEEcCCCCEEecccChh-HCCcCCEEE
Confidence 34678888775432 0111 134567776 67777666432210 0111 235789999
Q ss_pred EcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875 84 IPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQV 133 (308)
Q Consensus 84 lpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~ 133 (308)
+|||.. . ........+.++++++.+++ ++|.+||.|..+|+.+
T Consensus 71 vpGG~g-~----~~~~~~~~l~~~lr~~~~~g--~~v~aiC~G~~~La~a 113 (231)
T 3noq_A 71 IPGGTG-V----GALMEDPQALAFIRQQAARA--RYVTSVSTGSLVLGAA 113 (231)
T ss_dssp ECCSTT-H----HHHTTCHHHHHHHHHHHTTC--SEEEEETTHHHHHHHT
T ss_pred ECCCCC-h----hhhccCHHHHHHHHHHHhcC--CEEEEECHHHHHHHHc
Confidence 999952 1 11112347889999988855 9999999999999876
No 104
>2h2w_A Homoserine O-succinyltransferase; TM0881, (EC 2.3.1.46), HOM O-transsuccinylase, HTS, (TM0881), structural genomics; 2.52A {Thermotoga maritima}
Probab=95.13 E-value=0.0058 Score=55.50 Aligned_cols=23 Identities=9% Similarity=0.020 Sum_probs=19.5
Q ss_pred cCCCCeeeeehhHHHHHHHhCCc
Q psy12875 172 GVTFPVLGVCLGFELILQVSNND 194 (308)
Q Consensus 172 ~~~~PilGiClG~Qll~~~~G~~ 194 (308)
...+|+||||+|||+++.++||.
T Consensus 145 ~~~~p~LGIC~GaQ~~l~~~~G~ 167 (312)
T 2h2w_A 145 HNVYSTMFICWAAQAGLYYFYGI 167 (312)
T ss_dssp HHEEEEEEETHHHHHHHHHHHCC
T ss_pred HcCCcEEEECHHHHHHHHHhCCC
Confidence 46899999999999977777764
No 105
>3mgk_A Intracellular protease/amidase related enzyme (THIJ family); amidotranferase-like, structural genomics, PSI; 2.00A {Clostridium acetobutylicum}
Probab=95.08 E-value=0.011 Score=50.51 Aligned_cols=50 Identities=16% Similarity=0.337 Sum_probs=37.5
Q ss_pred CCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875 77 TQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQV 133 (308)
Q Consensus 77 ~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~ 133 (308)
..+|.|++|||.. + ........+.++++++.+++ ++|.+||.|..+|+.+
T Consensus 64 ~~~D~livpGG~~---~--~~~~~~~~~~~~l~~~~~~~--k~iaaiC~G~~~La~a 113 (211)
T 3mgk_A 64 NIEKILFVPGGSG---T--REKVNDDNFINFIGNMVKES--KYIISVCTGSALLSKA 113 (211)
T ss_dssp SSEEEEEECCSTH---H--HHHTTCHHHHHHHHHHHHHC--SEEEECTTHHHHHHHT
T ss_pred CCCCEEEECCCcc---h--hhhcCCHHHHHHHHHHHHcC--CEEEEEchHHHHHHhc
Confidence 3579999999951 1 11112246888999988865 9999999999999976
No 106
>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413}
Probab=94.49 E-value=0.02 Score=53.16 Aligned_cols=96 Identities=23% Similarity=0.338 Sum_probs=62.2
Q ss_pred CEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCCh---------h-----HHHH-hcCCCCEEE
Q psy12875 19 PVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDR---------E-----YYAE-ILTQINGVV 83 (308)
Q Consensus 19 P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~---------~-----~~~~-~l~~~dGli 83 (308)
..|+|+..+... ...+ ....+.|+.+|+++..+...... . .++. ....+|.|+
T Consensus 11 kkV~ILl~dgf~----------~~El--~~p~dvL~~Ag~~v~vvS~~~g~~V~ss~G~~~i~~d~~l~~v~~~~~DaLi 78 (365)
T 3fse_A 11 KKVAILIEQAVE----------DTEF--IIPCNGLKQAGFEVVVLGSRMNEKYKGKRGRLSTQADGTTTEAIASEFDAVV 78 (365)
T ss_dssp CEEEEECCTTBC----------HHHH--HHHHHHHHHTTCEEEEEESSSSCCEECTTSCCEECCSEETTTCCGGGCSEEE
T ss_pred eEEEEEECCCCc----------HHHH--HHHHHHHHHCCCEEEEEECCCCceeecCCCceEEeCCCCHhhCCCcCCCEEE
Confidence 468888765322 0111 24568889999998887654321 0 0111 112589999
Q ss_pred EcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875 84 IPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQV 133 (308)
Q Consensus 84 lpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~ 133 (308)
+|||.. + ........+.++++++.+++ +||.+||.|..+|+.+
T Consensus 79 VPGG~g---~--~~l~~~~~l~~~Lr~~~~~g--k~IaAIC~G~~lLA~A 121 (365)
T 3fse_A 79 IPGGMA---P--DKMRRNPNTVRFVQEAMEQG--KLVAAVCHGPQVLIEG 121 (365)
T ss_dssp ECCBTH---H--HHHTTCHHHHHHHHHHHHTT--CEEEEETTTHHHHHHT
T ss_pred EECCcc---h--hhccCCHHHHHHHHHHHHCC--CEEEEECHHHHHHHHc
Confidence 999951 1 11122347888999998855 9999999999999976
No 107
>3bhn_A THIJ/PFPI domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.76A {Shewanella loihica pv-4}
Probab=88.53 E-value=0.12 Score=44.77 Aligned_cols=51 Identities=14% Similarity=0.184 Sum_probs=32.7
Q ss_pred cCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875 76 LTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQV 133 (308)
Q Consensus 76 l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~ 133 (308)
...+|.|++|||... . ......+.+.+++ +.+++ +++|.+||.|..+|+.+
T Consensus 78 ~~~~D~liVPGG~~g--~--~~l~~~~~l~~~L--~~~~~-~~~IaaIC~G~~lLa~A 128 (236)
T 3bhn_A 78 VKEQDVVLITSGYRG--I--PAALQDENFMSAL--KLDPS-RQLIGSICAGSFVLHEL 128 (236)
T ss_dssp GGGCSEEEECCCTTH--H--HHHHTCHHHHHHC--CCCTT-TCEEEEETTHHHHHHHT
T ss_pred ccCCCEEEEcCCccC--H--hhhccCHHHHHHH--HhCCC-CCEEEEEcHHHHHHHHc
Confidence 467899999999211 0 0111123566666 33432 23999999999999976
No 108
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=86.70 E-value=0.88 Score=36.97 Aligned_cols=70 Identities=7% Similarity=0.066 Sum_probs=39.5
Q ss_pred cCCCCEEEEeccccCCCCcccccCCC-CccchHHHHHHHHHHcCCeEEEEE-cCCChhHHH----Hhc-CCCCEEEEcCC
Q psy12875 15 STDTPVIGILAQEYTHIPSYVKAYPN-YTSYIAASYVKNIEAAGARVVPIL-IGQDREYYA----EIL-TQINGVVIPGG 87 (308)
Q Consensus 15 ~~~~P~IGI~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~l~~aG~~~~~i~-~~~~~~~~~----~~l-~~~dGlilpGG 87 (308)
++.+|.++|++.-+.. . .+. .++ -...+..+|+++|+++.... ..++ +.+. +.+ +++|-||.+||
T Consensus 4 ~~~~~rv~ii~tGdEl----~--~G~i~Ds-n~~~l~~~l~~~G~~v~~~~iv~Dd-~~i~~al~~a~~~~~DlVittGG 75 (164)
T 3pzy_A 4 SMTTRSARVIIASTRA----S--SGEYEDR-CGPIITEWLAQQGFSSAQPEVVADG-SPVGEALRKAIDDDVDVILTSGG 75 (164)
T ss_dssp ---CCEEEEEEECHHH----H--C----CC-HHHHHHHHHHHTTCEECCCEEECSS-HHHHHHHHHHHHTTCSEEEEESC
T ss_pred CCCCCEEEEEEECCCC----C--CCceeeH-HHHHHHHHHHHCCCEEEEEEEeCCH-HHHHHHHHHHHhCCCCEEEECCC
Confidence 4678999999875432 0 111 121 12245678899999876432 2334 4443 334 37999999999
Q ss_pred CCCCCC
Q psy12875 88 GTGFDH 93 (308)
Q Consensus 88 ~~~~~~ 93 (308)
-+ ..+
T Consensus 76 ~s-~g~ 80 (164)
T 3pzy_A 76 TG-IAP 80 (164)
T ss_dssp CS-SST
T ss_pred CC-CCC
Confidence 74 444
No 109
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=86.39 E-value=4.2 Score=33.31 Aligned_cols=72 Identities=8% Similarity=0.140 Sum_probs=41.6
Q ss_pred CCCEEEEeccccCCCCccccc-C-CC-CccchHHHHHHHHHHcCCeEEEEE-cCCChhHH----HHhcCC--CCEEEEcC
Q psy12875 17 DTPVIGILAQEYTHIPSYVKA-Y-PN-YTSYIAASYVKNIEAAGARVVPIL-IGQDREYY----AEILTQ--INGVVIPG 86 (308)
Q Consensus 17 ~~P~IGI~~~~~~~~~~~~~~-~-~~-~~~~i~~~~~~~l~~aG~~~~~i~-~~~~~~~~----~~~l~~--~dGlilpG 86 (308)
.+|.++|++.-+... .+. . +. .++ -...+..+|+++|+++.... ..++.+.+ .+.+++ +|-||.+|
T Consensus 14 ~~~rv~IittGde~~---~~~~~~G~i~Ds-n~~~L~~~l~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~~DlVittG 89 (178)
T 2pjk_A 14 KSLNFYVITISTSRY---EKLLKKEPIVDE-SGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTG 89 (178)
T ss_dssp CCCEEEEEEECHHHH---HHHHTTCCCCCH-HHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEES
T ss_pred CCCEEEEEEeCcccc---cccccCCeEeeh-HHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEECC
Confidence 479999998764210 000 1 11 111 12245678899999887554 33444443 334555 89999999
Q ss_pred CCCCCCC
Q psy12875 87 GGTGFDH 93 (308)
Q Consensus 87 G~~~~~~ 93 (308)
|.+ ..+
T Consensus 90 G~s-~g~ 95 (178)
T 2pjk_A 90 GTG-YSP 95 (178)
T ss_dssp CCS-SST
T ss_pred CCC-CCC
Confidence 874 444
No 110
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=84.93 E-value=0.34 Score=41.68 Aligned_cols=19 Identities=16% Similarity=0.046 Sum_probs=16.7
Q ss_pred cCCCCeeeeehhHHHHHHH
Q psy12875 172 GVTFPVLGVCLGFELILQV 190 (308)
Q Consensus 172 ~~~~PilGiClG~Qll~~~ 190 (308)
...+|++|+|.|+|+++..
T Consensus 111 ~~G~p~~G~sAG~~~l~~~ 129 (229)
T 1fy2_A 111 KRGALYIGWSAGANLACPT 129 (229)
T ss_dssp HTTCEEEEETHHHHHTSSB
T ss_pred HcCCEEEEECHHHHhhccc
Confidence 4579999999999999874
No 111
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=83.63 E-value=0.37 Score=40.82 Aligned_cols=18 Identities=11% Similarity=0.030 Sum_probs=15.9
Q ss_pred cCCCCeeeeehhHHHHHH
Q psy12875 172 GVTFPVLGVCLGFELILQ 189 (308)
Q Consensus 172 ~~~~PilGiClG~Qll~~ 189 (308)
...+|++|+|.|+|+++.
T Consensus 111 ~~G~p~~G~sAGa~~l~~ 128 (206)
T 3l4e_A 111 AAGKLYIGESAGAVITSP 128 (206)
T ss_dssp HTTCEEEEETHHHHTTSS
T ss_pred HcCCeEEEECHHHHHhcc
Confidence 457899999999999976
No 112
>3ugj_A Phosphoribosylformylglycinamidine synthase; amidotransferase, glutaminase, thioester intermediate, ligas; HET: ADP; 1.78A {Salmonella enterica subsp} PDB: 1t3t_A* 3ujn_A* 3umm_A*
Probab=83.34 E-value=0.35 Score=51.81 Aligned_cols=28 Identities=14% Similarity=0.108 Sum_probs=24.1
Q ss_pred EEEEEEecCCCEEEEeecCCccCcccCC
Q psy12875 274 FVSTVEHKEYPIVGIQFHPEKNAYEWTE 301 (308)
Q Consensus 274 ~v~ai~~~~~p~~GvQFHPE~~~~~~~~ 301 (308)
-|++|-..+.+++|...|||+....|-.
T Consensus 1251 ~IaGi~s~~Grvlg~MpHPEr~~~~~~~ 1278 (1303)
T 3ugj_A 1251 GITAVTTENGRVTIMMPHPERVFRTVAN 1278 (1303)
T ss_dssp GEEEEECTTSSEEEESSBGGGSSBGGGC
T ss_pred hceEeECCCCCEEEEcCChHHccccccc
Confidence 3889999999999999999999776644
No 113
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=78.68 E-value=4.5 Score=33.48 Aligned_cols=69 Identities=13% Similarity=0.024 Sum_probs=42.3
Q ss_pred CCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEc-CCChhHHH----Hhc-CCCCEEEEcCCCCC
Q psy12875 17 DTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILI-GQDREYYA----EIL-TQINGVVIPGGGTG 90 (308)
Q Consensus 17 ~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~-~~~~~~~~----~~l-~~~dGlilpGG~~~ 90 (308)
.+|.++|++.-+.. ..+..++ -...+..+|++.|+++..... .++.+.+. +.+ +++|-||.+||-+
T Consensus 29 ~~~rvaIistGdEl------~~G~~Ds-n~~~L~~~L~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~DlVIttGGts- 100 (185)
T 3rfq_A 29 VVGRALVVVVDDRT------AHGDEDH-SGPLVTELLTEAGFVVDGVVAVEADEVDIRNALNTAVIGGVDLVVSVGGTG- 100 (185)
T ss_dssp CCEEEEEEEECHHH------HTTCCCS-HHHHHHHHHHHTTEEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEESCCS-
T ss_pred CCCEEEEEEECccc------CCCCcCc-HHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhCCCCEEEECCCCC-
Confidence 67999999875432 0111122 223456788999998875543 34444333 334 5799999999974
Q ss_pred CCC
Q psy12875 91 FDH 93 (308)
Q Consensus 91 ~~~ 93 (308)
..+
T Consensus 101 ~g~ 103 (185)
T 3rfq_A 101 VTP 103 (185)
T ss_dssp SST
T ss_pred CCC
Confidence 444
No 114
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=76.03 E-value=14 Score=30.41 Aligned_cols=75 Identities=11% Similarity=0.137 Sum_probs=39.9
Q ss_pred hcccCCCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHH---cCCeEEEEE-cCCChhHHH----HhcC--CCCE
Q psy12875 12 TVTSTDTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEA---AGARVVPIL-IGQDREYYA----EILT--QING 81 (308)
Q Consensus 12 ~~~~~~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~---aG~~~~~i~-~~~~~~~~~----~~l~--~~dG 81 (308)
++.--.+|.++|++.-+.- . .+...+--...+..+|++ .|+++.... ..++.+.+. +.++ ++|-
T Consensus 8 ~v~v~~~~rv~IistGdEl----~--~g~~~D~n~~~L~~~L~~~~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~~Dl 81 (189)
T 1jlj_A 8 LTNHDHQIRVGVLTVSDSC----F--RNLAEDRSGINLKDLVQDPSLLGGTISAYKIVPDEIEEIKETLIDWCDEKELNL 81 (189)
T ss_dssp -----CCCEEEEEEECHHH----H--TTSSCCHHHHHHHHHHHCTTTTCCEEEEEEEECSCHHHHHHHHHHHHHTSCCSE
T ss_pred cccccCCCEEEEEEECCcc----C--CCcccchHHHHHHHHHhchhcCCcEEEEEEEeCCCHHHHHHHHHHHhhcCCCCE
Confidence 3434467999999875432 0 111111112234567777 798876543 334444333 3343 6899
Q ss_pred EEEcCCCCCCCC
Q psy12875 82 VVIPGGGTGFDH 93 (308)
Q Consensus 82 lilpGG~~~~~~ 93 (308)
||.+||-+ ..+
T Consensus 82 VIttGGtg-~g~ 92 (189)
T 1jlj_A 82 ILTTGGTG-FAP 92 (189)
T ss_dssp EEEESCCS-SST
T ss_pred EEEcCCCC-CCC
Confidence 99999974 444
No 115
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=75.96 E-value=12 Score=33.22 Aligned_cols=87 Identities=6% Similarity=-0.012 Sum_probs=50.4
Q ss_pred CCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChhH----HHHhcC---CCCEEEEcCCCC
Q psy12875 17 DTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREY----YAEILT---QINGVVIPGGGT 89 (308)
Q Consensus 17 ~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~----~~~~l~---~~dGlilpGG~~ 89 (308)
.++.||++......++ +...+...+.+.+++.|..+.......+.+. ++..+. ++||||+.+..
T Consensus 2 ~~~~Ig~i~p~~~~~~--------f~~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~~~- 72 (350)
T 3h75_A 2 SLTSVVFLNPGNSTET--------FWVSYSQFMQAAARDLGLDLRILYAERDPQNTLQQARELFQGRDKPDYLMLVNEQ- 72 (350)
T ss_dssp -CCEEEEEECSCTTCH--------HHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHSSSCCSEEEEECCS-
T ss_pred CCCEEEEECCCCCCCh--------HHHHHHHHHHHHHHHcCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEeCch-
Confidence 4688999876433211 1123455677888888999888865554432 333343 89999997521
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechh
Q psy12875 90 GFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLG 126 (308)
Q Consensus 90 ~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G 126 (308)
. . ..+.++.+.+ .++|+..+...
T Consensus 73 ---~---~------~~~~~~~~~~--~giPvV~~~~~ 95 (350)
T 3h75_A 73 ---Y---V------APQILRLSQG--SGIKLFIVNSP 95 (350)
T ss_dssp ---S---H------HHHHHHHHTT--SCCEEEEEESC
T ss_pred ---h---h------HHHHHHHHHh--CCCcEEEEcCC
Confidence 0 1 1122333444 34999887653
No 116
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=73.85 E-value=11 Score=30.23 Aligned_cols=65 Identities=17% Similarity=0.158 Sum_probs=39.5
Q ss_pred CCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEc-CCChhHH----HHhcC--CCCEEEEcCCCC
Q psy12875 17 DTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILI-GQDREYY----AEILT--QINGVVIPGGGT 89 (308)
Q Consensus 17 ~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~-~~~~~~~----~~~l~--~~dGlilpGG~~ 89 (308)
.+|.++|++.-... ...+ ++ -...+..+|++.|+++..... .++.+.+ .+.++ ++|-||.+||-+
T Consensus 12 ~~~rv~Ii~tGdEl----g~i~---Ds-n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~g 83 (169)
T 1y5e_A 12 KEVRCKIVTISDTR----TEET---DK-SGQLLHELLKEAGHKVTSYEIVKDDKESIQQAVLAGYHKEDVDVVLTNGGTG 83 (169)
T ss_dssp CCCEEEEEEECSSC----CTTT---CH-HHHHHHHHHHHHTCEEEEEEEECSSHHHHHHHHHHHHTCTTCSEEEEECCCS
T ss_pred cCCEEEEEEEcCcc----Ceec---cC-hHHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEEcCCCC
Confidence 46899999865432 1111 11 122346788899998865443 3443333 33455 799999999874
No 117
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=73.25 E-value=4.5 Score=33.71 Aligned_cols=71 Identities=15% Similarity=0.128 Sum_probs=38.1
Q ss_pred CCCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCe--EEEE-EcCCChhHHH----HhcC--CCCEEEEcC
Q psy12875 16 TDTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGAR--VVPI-LIGQDREYYA----EILT--QINGVVIPG 86 (308)
Q Consensus 16 ~~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~--~~~i-~~~~~~~~~~----~~l~--~~dGlilpG 86 (308)
|++|.++|++.-+.. . .+...+--...+.++|++.|++ +... ...++.+.+. +.++ ++|-||.+|
T Consensus 1 ~~~~rv~IIttGdEl----~--~G~i~D~n~~~L~~~L~~~G~~~~v~~~~iV~Dd~~~I~~al~~a~~~~~~DlVitTG 74 (195)
T 1di6_A 1 MATLRIGLVSISDRA----S--SGVYQDKGIPALEEWLTSALTTPFELETRLIPDEQAIIEQTLCELVDEMSCHLVLTTG 74 (195)
T ss_dssp -CCEEEEEEEEECC-------------CCHHHHHHHHHHHHBCSCEEEEEEEEESCHHHHHHHHHHHHHTSCCSEEEEES
T ss_pred CCCCEEEEEEECCCC----C--CCeEEchHHHHHHHHHHHcCCCCceEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEECC
Confidence 357899999875442 0 1111111123456788899976 3322 2334444333 3344 689999999
Q ss_pred CCCCCCC
Q psy12875 87 GGTGFDH 93 (308)
Q Consensus 87 G~~~~~~ 93 (308)
|-+ ..+
T Consensus 75 Gtg-~g~ 80 (195)
T 1di6_A 75 GTG-PAR 80 (195)
T ss_dssp CCS-SST
T ss_pred CCC-CCC
Confidence 873 444
No 118
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=70.48 E-value=12 Score=30.24 Aligned_cols=65 Identities=18% Similarity=0.190 Sum_probs=38.8
Q ss_pred CCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEE-cCCChhHHH----HhcC--CCCEEEEcCCCC
Q psy12875 17 DTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPIL-IGQDREYYA----EILT--QINGVVIPGGGT 89 (308)
Q Consensus 17 ~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~-~~~~~~~~~----~~l~--~~dGlilpGG~~ 89 (308)
.+|.++|++.-... ...++ + -...+...|++.|+++.... ..++.+.+. +.++ ++|-||.+||-+
T Consensus 9 ~~~~v~Ii~tGdE~----g~i~D---~-n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~~DlVittGG~g 80 (172)
T 1mkz_A 9 IPTRIAILTVSNRR----GEEDD---T-SGHYLRDSAQEAGHHVVDKAIVKENRYAIRAQVSAWIASDDVQVVLITGGTG 80 (172)
T ss_dssp CCCEEEEEEECSSC----CGGGC---H-HHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHSSSCCEEEEESCCS
T ss_pred CCCEEEEEEEeCCC----CcccC---c-cHHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEeCCCCC
Confidence 46899999775432 11111 1 12235678899999886543 334444333 3344 389999999874
No 119
>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2
Probab=70.23 E-value=2.7 Score=34.62 Aligned_cols=26 Identities=19% Similarity=0.425 Sum_probs=21.0
Q ss_pred hhhHhhh-cCCCCeeeeehhHHHHHHH
Q psy12875 165 FSQINEE-GVTFPVLGVCLGFELILQV 190 (308)
Q Consensus 165 ~~~i~~~-~~~~PilGiClG~Qll~~~ 190 (308)
..++++. ...+|+.|||.|.|+|+.+
T Consensus 108 ~~~l~~~~~~gk~i~aIC~G~~lLa~a 134 (193)
T 1oi4_A 108 VTFTRDFVNSGKPVFAICHGPQLLISA 134 (193)
T ss_dssp HHHHHHHHHTTCCEEEETTTHHHHHHH
T ss_pred HHHHHHHHHcCCEEEEECHHHHHHHHC
Confidence 4455554 5689999999999999986
No 120
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=69.66 E-value=45 Score=28.06 Aligned_cols=63 Identities=11% Similarity=0.181 Sum_probs=39.7
Q ss_pred CCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChhHH----HHh-cCCCCEEEEcCCC
Q psy12875 17 DTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYY----AEI-LTQINGVVIPGGG 88 (308)
Q Consensus 17 ~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~----~~~-l~~~dGlilpGG~ 88 (308)
.+.+||+....... + ...-+...+.+.+++.|..+.......+.+.. +.. -.++||||+.+..
T Consensus 14 ~~~~Igvi~~~~~~-~--------~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 81 (298)
T 3tb6_A 14 SNKTIGVLTTYISD-Y--------IFPSIIRGIESYLSEQGYSMLLTSTNNNPDNERRGLENLLSQHIDGLIVEPTK 81 (298)
T ss_dssp -CCEEEEEESCSSS-T--------THHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTCCSEEEECCSS
T ss_pred cCceEEEEeCCCCc-h--------HHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHCCCCEEEEeccc
Confidence 34799998765332 1 11234556778888899999888765544321 221 2579999997653
No 121
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=69.60 E-value=5.6 Score=32.48 Aligned_cols=67 Identities=15% Similarity=0.006 Sum_probs=38.7
Q ss_pred CCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEc-CCChhHHH----HhcCCCCEEEEcCCCC
Q psy12875 17 DTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILI-GQDREYYA----EILTQINGVVIPGGGT 89 (308)
Q Consensus 17 ~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~-~~~~~~~~----~~l~~~dGlilpGG~~ 89 (308)
++|.++|++.-+.- ..+.-.+--...+.++|++.|+.+..... .++.+.+. +.++++|-||.+||-+
T Consensus 2 ~~~~v~IistGdEl------l~G~i~DtN~~~l~~~L~~~G~~v~~~~iv~Dd~~~I~~~l~~a~~~~DlVittGG~g 73 (172)
T 3kbq_A 2 NAKNASVITVGNEI------LKGRTVNTNAAFIGNFLTYHGYQVRRGFVVMDDLDEIGWAFRVALEVSDLVVSSGGLG 73 (172)
T ss_dssp --CEEEEEEECHHH------HTTSSCCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHHCSEEEEESCCS
T ss_pred CCCEEEEEEEcccc------cCCcEEeHHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCEEEEcCCCc
Confidence 35889988775431 01111111123456788999998876543 34444433 3445689999999864
No 122
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=67.73 E-value=28 Score=29.47 Aligned_cols=63 Identities=10% Similarity=0.155 Sum_probs=38.5
Q ss_pred CCCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChhH----HHHh-cCCCCEEEEcCC
Q psy12875 16 TDTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREY----YAEI-LTQINGVVIPGG 87 (308)
Q Consensus 16 ~~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~----~~~~-l~~~dGlilpGG 87 (308)
....+||++...... + ....+...+.+.+++.|..+.......+.+. ++.. -.++||||+.+.
T Consensus 6 ~~~~~Ig~i~~~~~~-~--------~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~ 73 (293)
T 3l6u_A 6 PKRNIVGFTIVNDKH-E--------FAQRLINAFKAEAKANKYEALVATSQNSRISEREQILEFVHLKVDAIFITTL 73 (293)
T ss_dssp ---CEEEEEESCSCS-H--------HHHHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHHHTTCSEEEEECS
T ss_pred CCCcEEEEEEecCCc-H--------HHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 345889998764332 1 1123455677888889999988876655432 2221 247999999765
No 123
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=66.81 E-value=43 Score=28.19 Aligned_cols=62 Identities=16% Similarity=0.264 Sum_probs=38.6
Q ss_pred CCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChhH----HHHh-cCCCCEEEEcCC
Q psy12875 17 DTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREY----YAEI-LTQINGVVIPGG 87 (308)
Q Consensus 17 ~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~----~~~~-l~~~dGlilpGG 87 (308)
..-+||+....... + ...-+...+.+.+++.|..+.......+.+. ++.. -.++||||+.+.
T Consensus 4 ~~~~Ig~i~~~~~~-~--------~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 70 (291)
T 3l49_A 4 EGKTIGITAIGTDH-D--------WDLKAYQAQIAEIERLGGTAIALDAGRNDQTQVSQIQTLIAQKPDAIIEQLG 70 (291)
T ss_dssp TTCEEEEEESCCSS-H--------HHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHHCCSEEEEESS
T ss_pred CCcEEEEEeCCCCC-h--------HHHHHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 34689998764322 0 1122445677888889999988876555332 2221 247999999765
No 124
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=65.66 E-value=3.8 Score=33.08 Aligned_cols=68 Identities=7% Similarity=-0.003 Sum_probs=35.7
Q ss_pred CCCCEEEEeccccCCCCcccccCCCCccchHHHHHHH----HHHcCCeEEEEE-cCCChhHH----HHhcC-CCCEEEEc
Q psy12875 16 TDTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKN----IEAAGARVVPIL-IGQDREYY----AEILT-QINGVVIP 85 (308)
Q Consensus 16 ~~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----l~~aG~~~~~i~-~~~~~~~~----~~~l~-~~dGlilp 85 (308)
+|.|.++|++.-.... ..... ++ -...+.++ |++.|+++.... ..++.+.+ .+.++ .+|-||.+
T Consensus 3 ~m~~~v~Ii~~GdEl~--~G~i~---D~-n~~~l~~~~~~~l~~~G~~v~~~~iv~Dd~~~I~~~l~~a~~~~~DlVitt 76 (167)
T 2g2c_A 3 AMHIKSAIIVVSDRIS--TGTRE---NK-ALPLLQRLMSDELQDYSYELISEVVVPEGYDTVVEAIATALKQGARFIITA 76 (167)
T ss_dssp -CEEEEEEEEECHHHH--HTSSC---CC-HHHHHHHHHCC----CEEEEEEEEEECSSHHHHHHHHHHHHHTTCSEEEEE
T ss_pred CCccEEEEEEECCccc--CCcee---cc-HHHHHHHhHHhHHHHCCCEEeEEEEeCCCHHHHHHHHHHHHhCCCCEEEEC
Confidence 4678999987754320 00111 11 11234567 888998876543 33444433 33344 49999999
Q ss_pred CCCC
Q psy12875 86 GGGT 89 (308)
Q Consensus 86 GG~~ 89 (308)
||-+
T Consensus 77 GG~g 80 (167)
T 2g2c_A 77 GGTG 80 (167)
T ss_dssp SCCS
T ss_pred CCCC
Confidence 9873
No 125
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=64.07 E-value=41 Score=28.81 Aligned_cols=62 Identities=18% Similarity=0.132 Sum_probs=38.7
Q ss_pred CCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChhH----HHHh-cCCCCEEEEcCCC
Q psy12875 18 TPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREY----YAEI-LTQINGVVIPGGG 88 (308)
Q Consensus 18 ~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~----~~~~-l~~~dGlilpGG~ 88 (308)
+.+||+....... + ...-+...+.+.+++.|..+.......+.+. ++.. -.++||||+.+..
T Consensus 2 ~~~Igvi~~~~~~-~--------~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~ 68 (313)
T 3m9w_A 2 EVKIGMAIDDLRL-E--------RWQKDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPYN 68 (313)
T ss_dssp -CEEEEEESCCSS-S--------TTHHHHHHHHHHHHHTSCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECSS
T ss_pred CcEEEEEeCCCCC-h--------HHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 4689988764332 1 1123455677888899999888776554432 2221 2579999997653
No 126
>1g8l_A Molybdopterin biosynthesis MOEA protein; molybdenum cofactor biosynthesis, metal binding protein; 1.95A {Escherichia coli} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1fc5_A 1g8r_A 2nqu_A 2nro_A 2nqq_A 2nqk_A 2nqr_A 2nqm_A 2nqs_A 2nrp_A 2nqv_A 2nrs_A 2nqn_A
Probab=63.96 E-value=12 Score=34.87 Aligned_cols=82 Identities=13% Similarity=0.049 Sum_probs=44.4
Q ss_pred hhcccCCCCEEEEeccccCCCCcccccCCCC-ccchHHHHHHHHHHcCCeEEEEEc-CCChhHHH----HhcCCCCEEEE
Q psy12875 11 STVTSTDTPVIGILAQEYTHIPSYVKAYPNY-TSYIAASYVKNIEAAGARVVPILI-GQDREYYA----EILTQINGVVI 84 (308)
Q Consensus 11 ~~~~~~~~P~IGI~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~l~~aG~~~~~i~~-~~~~~~~~----~~l~~~dGlil 84 (308)
..|.-..+|.|+|++.-..-..-.....++. .+.-...+..+|++.|+++..... .++.+.+. +.++++|-||.
T Consensus 170 ~~V~V~~~~rv~iistGdEl~~~g~~~~~G~i~dsn~~~L~~~l~~~G~~v~~~~iv~Dd~~~i~~al~~a~~~~Dlvit 249 (411)
T 1g8l_A 170 AEVPVIRKVRVALFSTGDELQLPGQPLGDGQIYDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEADSQADVVIS 249 (411)
T ss_dssp CEEEEECCCEEEEEEECTTEECTTSCCCSSCEECCHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHHCSEEEE
T ss_pred ceEEecCCCEEEEEEcCccccCCCCCCCCCcEEcCchHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHhhcCCEEEE
Confidence 3344446899999976443200000001111 111122456788999998876543 34444333 33457899999
Q ss_pred cCCCCCCCC
Q psy12875 85 PGGGTGFDH 93 (308)
Q Consensus 85 pGG~~~~~~ 93 (308)
+||.+ ..+
T Consensus 250 tGG~s-~g~ 257 (411)
T 1g8l_A 250 SGGVS-VGE 257 (411)
T ss_dssp CSSSC-SSS
T ss_pred CCCCC-CCC
Confidence 99874 444
No 127
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=63.68 E-value=10 Score=30.87 Aligned_cols=67 Identities=15% Similarity=0.145 Sum_probs=37.0
Q ss_pred CCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHH---HcCCeEEEEEcCCChhHH----HHhcC--CCCEEEEcCC
Q psy12875 17 DTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIE---AAGARVVPILIGQDREYY----AEILT--QINGVVIPGG 87 (308)
Q Consensus 17 ~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~---~aG~~~~~i~~~~~~~~~----~~~l~--~~dGlilpGG 87 (308)
.+|.++|++.-... .....+ ++ -...+..+|+ +.|+++......++.+.+ .+.++ ++|-||.+||
T Consensus 4 ~~~rv~IistGdE~--~~G~i~---Ds-n~~~l~~~l~~l~~~G~~v~~~iv~Dd~~~I~~~l~~~~~~~~~DlVittGG 77 (178)
T 2pbq_A 4 KKAVIGVVTISDRA--SKGIYE---DI-SGKAIIDYLKDVIITPFEVEYRVIPDERDLIEKTLIELADEKGCSLILTTGG 77 (178)
T ss_dssp -CCEEEEEEECHHH--HHTSSC---CH-HHHHHHHHHHHHBCSCCEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESC
T ss_pred CCCEEEEEEeCCcC--CCCCee---cc-hHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 57999999765431 000111 11 1123345666 789988433344554443 33344 7899999998
Q ss_pred CC
Q psy12875 88 GT 89 (308)
Q Consensus 88 ~~ 89 (308)
-+
T Consensus 78 ~g 79 (178)
T 2pbq_A 78 TG 79 (178)
T ss_dssp CS
T ss_pred CC
Confidence 63
No 128
>1t0b_A THUA-like protein; trehalose metabolism, NCS symmetry, structural genomics, PSI, protein structure initiative; 1.70A {Geobacillus stearothermophilus} SCOP: c.23.16.6
Probab=62.09 E-value=16 Score=31.54 Aligned_cols=73 Identities=14% Similarity=0.181 Sum_probs=45.1
Q ss_pred hHHHHHHHHHHcCCeEEEEEcCCChhHH-HHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEe
Q psy12875 45 IAASYVKNIEAAGARVVPILIGQDREYY-AEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGV 123 (308)
Q Consensus 45 i~~~~~~~l~~aG~~~~~i~~~~~~~~~-~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGI 123 (308)
+...+.++|+..|+.+..+..++....+ ++.|+++|.||+-|... .........+.+++++++| ..++|+
T Consensus 33 ~~~~i~~~L~~~gf~V~~~t~dd~~~~~~~~~L~~~DvvV~~~~~~-------~~~l~~~~~~al~~~V~~G--gG~vgi 103 (252)
T 1t0b_A 33 MHTVIASYLAEAGFDAATAVLDEPEHGLTDEVLDRCDVLVWWGHIA-------HDEVKDEVVERVHRRVLEG--MGLIVL 103 (252)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSSGGGGCCHHHHHTCSEEEEECSSC-------GGGSCHHHHHHHHHHHHTT--CEEEEE
T ss_pred HHHHHHHHHhhCCcEEEEEeccCccccCCHhHHhcCCEEEEecCCC-------CCcCCHHHHHHHHHHHHcC--CCEEEE
Confidence 4456678899999998876643332222 24688999999943210 0111124455566777755 899999
Q ss_pred chh
Q psy12875 124 CLG 126 (308)
Q Consensus 124 C~G 126 (308)
=.|
T Consensus 104 H~a 106 (252)
T 1t0b_A 104 HSG 106 (252)
T ss_dssp GGG
T ss_pred ccc
Confidence 544
No 129
>1ehs_A STB, heat-stable enterotoxin B; disulfide; NMR {Escherichia coli} SCOP: g.2.1.1
Probab=59.80 E-value=1.9 Score=26.15 Aligned_cols=15 Identities=20% Similarity=0.722 Sum_probs=12.1
Q ss_pred eeeehhHHHHHHHhC
Q psy12875 178 LGVCLGFELILQVSN 192 (308)
Q Consensus 178 lGiClG~Qll~~~~G 192 (308)
.|.|+|.|+|-.+-|
T Consensus 33 agacfgaqimvaakg 47 (48)
T 1ehs_A 33 AGACFGAQIMVAAKG 47 (48)
T ss_dssp CCTTTTTHHHHTTTT
T ss_pred cccccchhHhhhccc
Confidence 578999999977654
No 130
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=59.78 E-value=43 Score=28.87 Aligned_cols=62 Identities=16% Similarity=0.116 Sum_probs=39.3
Q ss_pred CCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChhH----HHHh-cCCCCEEEEcCC
Q psy12875 17 DTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREY----YAEI-LTQINGVVIPGG 87 (308)
Q Consensus 17 ~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~----~~~~-l~~~dGlilpGG 87 (308)
.+.+||+....... + ....+...+.+.+++.|..+.......+.+. ++.. -.++||||+.+.
T Consensus 2 ~~~~Igvi~~~~~~-~--------~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiIi~~~ 68 (330)
T 3uug_A 2 DKGSVGIAMPTKSS-A--------RWIDDGNNIVKQLQEAGYKTDLQYADDDIPNQLSQIENMVTKGVKVLVIASI 68 (330)
T ss_dssp CCCEEEEEECCSSS-T--------HHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHHTCSEEEECCS
T ss_pred CCcEEEEEeCCCcc-h--------HHHHHHHHHHHHHHHcCCEEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEEcC
Confidence 46789998765432 1 1123456677888899999887775544332 2222 247999999765
No 131
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=58.80 E-value=56 Score=27.47 Aligned_cols=62 Identities=11% Similarity=0.160 Sum_probs=36.3
Q ss_pred CCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChhH----HHHh-cCCCCEEEEcCC
Q psy12875 17 DTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREY----YAEI-LTQINGVVIPGG 87 (308)
Q Consensus 17 ~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~----~~~~-l~~~dGlilpGG 87 (308)
|+-+||++...... + ....+...+.+.+++.|..+.......+.+. ++.. -.++||||+.+.
T Consensus 1 ~~~~Ig~i~~~~~~-~--------~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~ 67 (290)
T 2fn9_A 1 MKGKMAIVISTLNN-P--------WFVVLAETAKQRAEQLGYEATIFDSQNDTAKESAHFDAIIAAGYDAIIFNPT 67 (290)
T ss_dssp --CEEEEEESCSSS-H--------HHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred CceEEEEEeCCCCC-h--------HHHHHHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 35678988753321 0 1122445667788889998887665444321 2222 257999999764
No 132
>2fts_A Gephyrin; gephyrin, neuroreceptor anchoring, structu protein; 2.41A {Rattus norvegicus} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 2fu3_A 1t3e_A
Probab=58.65 E-value=11 Score=35.15 Aligned_cols=79 Identities=14% Similarity=0.264 Sum_probs=42.7
Q ss_pred hhcccCCCCEEEEeccccCCCCcccccCCCC-ccchHHHHHHHHHHcCCeEEEEEc-CCChhHHH----HhcCCCCEEEE
Q psy12875 11 STVTSTDTPVIGILAQEYTHIPSYVKAYPNY-TSYIAASYVKNIEAAGARVVPILI-GQDREYYA----EILTQINGVVI 84 (308)
Q Consensus 11 ~~~~~~~~P~IGI~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~l~~aG~~~~~i~~-~~~~~~~~----~~l~~~dGlil 84 (308)
..|.-..+|.++|++.-..-..-.....++. .+.-...+..+|++.|+++..... .++.+.+. +.++++|-||.
T Consensus 174 ~~v~V~~~prv~IistGdEl~~~g~~~~~G~i~dsN~~~L~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~DlVit 253 (419)
T 2fts_A 174 TEVEVNKFPVVAVMSTGNELLNPEDDLLPGKIRDSNRSTLLATIQEHGYPTINLGIVGDNPDDLLNALNEGISRADVIIT 253 (419)
T ss_dssp CEEEEECCCCEEEEEECTTEECTTSCCCTTCEECCHHHHHHHHHHTTTCCEEEEEEECSSHHHHHHHHHHHHHHCSEEEE
T ss_pred CeeEecCCCEEEEEEechhccCCCCCCCCCcEecCchHHHHHHHHHCCCEEEEEeecCCCHHHHHHHHHHHHhcCCEEEE
Confidence 3444446899999976432100000001111 111112356788899998875544 33434333 33456899999
Q ss_pred cCCCC
Q psy12875 85 PGGGT 89 (308)
Q Consensus 85 pGG~~ 89 (308)
+||.+
T Consensus 254 tGG~s 258 (419)
T 2fts_A 254 SGGVS 258 (419)
T ss_dssp ESCCS
T ss_pred cCCCc
Confidence 99874
No 133
>1uz5_A MOEA protein, 402AA long hypothetical molybdopterin biosynthesis MOEA protein; MOEA molybdopterin, MOCF biosynthesis; 2.05A {Pyrococcus horikoshii} SCOP: b.85.6.1 b.103.1.1 c.57.1.2
Probab=57.38 E-value=15 Score=34.20 Aligned_cols=78 Identities=17% Similarity=0.244 Sum_probs=42.2
Q ss_pred hcccCCCCEEEEeccccCCCCcccccCCCC-ccchHHHHHHHHHHcCCeEEEEEc-CCChhHHH----HhcCCCCEEEEc
Q psy12875 12 TVTSTDTPVIGILAQEYTHIPSYVKAYPNY-TSYIAASYVKNIEAAGARVVPILI-GQDREYYA----EILTQINGVVIP 85 (308)
Q Consensus 12 ~~~~~~~P~IGI~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~l~~aG~~~~~i~~-~~~~~~~~----~~l~~~dGlilp 85 (308)
.|.-..+|.++|++.-+.-..-.....++. .+.-...+...|++.|+++..... .++.+.+. +.++++|-||.+
T Consensus 174 ~V~V~~~prv~IistGdEl~~~g~~~~~G~i~DsN~~~L~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~DlVitt 253 (402)
T 1uz5_A 174 KVKVFRKPKVAVISTGNEIVPPGNELKPGQIYDINGRALCDAINELGGEGIFMGVARDDKESLKALIEKAVNVGDVVVIS 253 (402)
T ss_dssp EEEEECCCEEEEEEECTTEECTTSCCCTTCEECCHHHHHHHHHHHHTSEEEEEEEECSSHHHHHHHHHHHHHHCSEEEEE
T ss_pred eeeecCCCEEEEEEcCccccCCCCCCCCCcEEcchHHHHHHHHHhCCCeEEEEEEeCCCHHHHHHHHHHHhhCCCEEEEc
Confidence 344446899999976533200000001111 111122456788899998876543 34434333 334568999999
Q ss_pred CCCC
Q psy12875 86 GGGT 89 (308)
Q Consensus 86 GG~~ 89 (308)
||.+
T Consensus 254 GG~s 257 (402)
T 1uz5_A 254 GGAS 257 (402)
T ss_dssp CCC-
T ss_pred CCCC
Confidence 9974
No 134
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=53.39 E-value=22 Score=31.00 Aligned_cols=83 Identities=19% Similarity=0.172 Sum_probs=45.1
Q ss_pred CEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCCh--------hHHHHhcCCCCEEEEcCCCCC
Q psy12875 19 PVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDR--------EYYAEILTQINGVVIPGGGTG 90 (308)
Q Consensus 19 P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~--------~~~~~~l~~~dGlilpGG~~~ 90 (308)
..|+|...+... .. .-....+.++|++.|.++......... ...+...+++|.||.-||.
T Consensus 6 kki~ii~np~~~---------~~-~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~GGD-- 73 (292)
T 2an1_A 6 KCIGIVGHPRHP---------TA-LTTHEMLYRWLCDQGYEVIVEQQIAHELQLKNVPTGTLAEIGQQADLAVVVGGD-- 73 (292)
T ss_dssp CEEEEECC-----------------CHHHHHHHHHHHTTCEEEEEHHHHHHTTCSSCCEECHHHHHHHCSEEEECSCH--
T ss_pred cEEEEEEcCCCH---------HH-HHHHHHHHHHHHHCCCEEEEecchhhhcccccccccchhhcccCCCEEEEEcCc--
Confidence 468888876532 11 123457789999999987654311000 0011123468999999982
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechh
Q psy12875 91 FDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLG 126 (308)
Q Consensus 91 ~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G 126 (308)
- -+.+.++.... .++|++||=.|
T Consensus 74 G-----------T~l~a~~~~~~--~~~P~lGI~~G 96 (292)
T 2an1_A 74 G-----------NMLGAARTLAR--YDINVIGINRG 96 (292)
T ss_dssp H-----------HHHHHHHHHTT--SSCEEEEBCSS
T ss_pred H-----------HHHHHHHHhhc--CCCCEEEEECC
Confidence 1 23444444444 34899999655
No 135
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=53.34 E-value=65 Score=26.93 Aligned_cols=63 Identities=13% Similarity=0.175 Sum_probs=39.6
Q ss_pred CCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChhH----HHHh-cCCCCEEEEcCCC
Q psy12875 17 DTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREY----YAEI-LTQINGVVIPGGG 88 (308)
Q Consensus 17 ~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~----~~~~-l~~~dGlilpGG~ 88 (308)
...+||+....... + ....+...+.+.+++.|..+.......+.+. ++.. -.++||||+.+..
T Consensus 6 ~s~~Igvi~~~~~~-~--------~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 73 (276)
T 3jy6_A 6 SSKLIAVIVANIDD-Y--------FSTELFKGISSILESRGYIGVLFDANADIEREKTLLRAIGSRGFDGLILQSFS 73 (276)
T ss_dssp CCCEEEEEESCTTS-H--------HHHHHHHHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHTTTCSEEEEESSC
T ss_pred CCcEEEEEeCCCCc-h--------HHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCC
Confidence 45789998764322 1 1122445667788888999988876555432 1222 2479999998763
No 136
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=52.86 E-value=61 Score=27.51 Aligned_cols=62 Identities=11% Similarity=0.033 Sum_probs=37.4
Q ss_pred CCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcC--CChhH----HHH-hcCCCCEEEEcCC
Q psy12875 17 DTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIG--QDREY----YAE-ILTQINGVVIPGG 87 (308)
Q Consensus 17 ~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~--~~~~~----~~~-~l~~~dGlilpGG 87 (308)
.+-.||+....... + ....+...+.+.+++.|..+...... .+.+. ++. .-.++||||+.+.
T Consensus 2 ~~~~Igvi~~~~~~-~--------~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 70 (297)
T 3rot_A 2 VRDKYYLITHGSQD-P--------YWTSLFQGAKKAAEELKVDLQILAPPGANDVPKQVQFIESALATYPSGIATTIP 70 (297)
T ss_dssp -CCEEEEECSCCCS-H--------HHHHHHHHHHHHHHHHTCEEEEECCSSSCCHHHHHHHHHHHHHTCCSEEEECCC
T ss_pred ceEEEEEEecCCCC-c--------hHHHHHHHHHHHHHHhCcEEEEECCCCcCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 35689988765422 1 11234566778888889998876544 23221 222 2357999999765
No 137
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=50.78 E-value=93 Score=26.78 Aligned_cols=61 Identities=11% Similarity=0.102 Sum_probs=35.0
Q ss_pred CCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHc-CCeEEEEEcCCChhH----HHHh-cCCCCEEEEcCC
Q psy12875 17 DTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAA-GARVVPILIGQDREY----YAEI-LTQINGVVIPGG 87 (308)
Q Consensus 17 ~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~a-G~~~~~i~~~~~~~~----~~~~-l~~~dGlilpGG 87 (308)
...+||++... .. + +...+...+.+.+++. |..+.......+.+. ++.. -.++||||+.+.
T Consensus 5 ~~~~Igvi~~~-~~-~--------~~~~~~~gi~~~a~~~~g~~l~i~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 71 (325)
T 2x7x_A 5 PHFRIGVAQCS-DD-S--------WRHKMNDEILREAMFYNGVSVEIRSAGDDNSKQAEDVHYFMDEGVDLLIISAN 71 (325)
T ss_dssp -CCEEEEEESC-CS-H--------HHHHHHHHHHHHHTTSSSCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred CCeEEEEEecC-CC-H--------HHHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 45789998754 21 1 1112334556667777 888877665444321 2222 257999999754
No 138
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=50.39 E-value=84 Score=26.31 Aligned_cols=67 Identities=10% Similarity=0.077 Sum_probs=37.1
Q ss_pred CCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChhH----HHHh-cCCCCEEEEcCC
Q psy12875 17 DTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREY----YAEI-LTQINGVVIPGG 87 (308)
Q Consensus 17 ~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~----~~~~-l~~~dGlilpGG 87 (308)
...+||++...... ..........+...+.+.+++.|..+.......+.+. ++.. -.++||||+.+.
T Consensus 7 ~~~~Igvi~~~~~~----~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~ 78 (292)
T 3k4h_A 7 TTKTLGLVMPSSAS----KAFQNPFFPEVIRGISSFAHVEGYALYMSTGETEEEIFNGVVKMVQGRQIGGIILLYS 78 (292)
T ss_dssp CCCEEEEECSSCHH----HHTTSTHHHHHHHHHHHHHHHTTCEEEECCCCSHHHHHHHHHHHHHTTCCCEEEESCC
T ss_pred CCCEEEEEecCCcc----ccccCHHHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEeCC
Confidence 45789998775110 0000001123445667888889998876554333221 1111 257999999765
No 139
>1wu2_A MOEA protein, molybdopterin biosynthesis MOEA protein; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.30A {Pyrococcus horikoshii} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1xi8_A
Probab=50.00 E-value=15 Score=33.97 Aligned_cols=78 Identities=14% Similarity=0.092 Sum_probs=40.0
Q ss_pred hhcccCCCCEEEEeccccCCCCcccc--c-CCC-CccchHHHHHHHHHHcCCeEEEEEcC-CChhH----HHHhcCCCCE
Q psy12875 11 STVTSTDTPVIGILAQEYTHIPSYVK--A-YPN-YTSYIAASYVKNIEAAGARVVPILIG-QDREY----YAEILTQING 81 (308)
Q Consensus 11 ~~~~~~~~P~IGI~~~~~~~~~~~~~--~-~~~-~~~~i~~~~~~~l~~aG~~~~~i~~~-~~~~~----~~~~l~~~dG 81 (308)
..|.-..+|.|+|++.-+.-...... . .+. .++ -...+...|++.|+++.....- ++.+. +.+.++++|-
T Consensus 175 ~~V~V~~~prv~IistGdEl~~~~g~~~~~~G~i~Ds-n~~~L~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~Dl 253 (396)
T 1wu2_A 175 KKVPVKVKPKVGIIITGSELIEEPSEEGFKEGKIVET-NSIMLQGLVEKFFGEPILYGVLPDDESIIKETLEKAKNECDI 253 (396)
T ss_dssp SEEEEECCCEEEEEEECTTEESSCCHHHHHTTCEECC-HHHHHHHHHHHTTCEEEEEEEECSCHHHHTTHHHHHHHCSEE
T ss_pred ceeeecCCCEEEEEEcCcccccCCCCcccCCCcEecc-hHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHhhCCCE
Confidence 34444468999999765432000000 0 011 111 1224567888999988765443 33333 3344557899
Q ss_pred EEEcCCCC
Q psy12875 82 VVIPGGGT 89 (308)
Q Consensus 82 lilpGG~~ 89 (308)
||.+||.+
T Consensus 254 vittGG~s 261 (396)
T 1wu2_A 254 VLITGGSA 261 (396)
T ss_dssp EECC----
T ss_pred EEEeCCCC
Confidence 99999863
No 140
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=49.21 E-value=13 Score=29.75 Aligned_cols=42 Identities=7% Similarity=0.069 Sum_probs=27.6
Q ss_pred HHHHHHHHcCCeEEEEE-cCCChhHH----HHhcC--CCCEEEEcCCCC
Q psy12875 48 SYVKNIEAAGARVVPIL-IGQDREYY----AEILT--QINGVVIPGGGT 89 (308)
Q Consensus 48 ~~~~~l~~aG~~~~~i~-~~~~~~~~----~~~l~--~~dGlilpGG~~ 89 (308)
.+..+|++.|+++.... ..++.+.+ .+.++ ++|-||.+||-+
T Consensus 25 ~l~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~g 73 (164)
T 2is8_A 25 AIREVLAGGPFEVAAYELVPDEPPMIKKVLRLWADREGLDLILTNGGTG 73 (164)
T ss_dssp HHHHHHTTSSEEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCCS
T ss_pred HHHHHHHHCCCeEeEEEEcCCCHHHHHHHHHHHHhcCCCCEEEEcCCCC
Confidence 34678888998876543 33444433 33344 689999999974
No 141
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=49.05 E-value=55 Score=27.16 Aligned_cols=60 Identities=10% Similarity=0.107 Sum_probs=35.5
Q ss_pred CEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcC--CChh----HHHHh-cCC-CCEEEEcCC
Q psy12875 19 PVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIG--QDRE----YYAEI-LTQ-INGVVIPGG 87 (308)
Q Consensus 19 P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~--~~~~----~~~~~-l~~-~dGlilpGG 87 (308)
|.||+....... + ....+.+.+.+.+++.|..+...... .+.+ .++.. -.+ +||||+.+.
T Consensus 1 ~~Ig~i~~~~~~-~--------~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~~vdgii~~~~ 68 (276)
T 3ksm_A 1 PKLLLVLKGDSN-A--------YWRQVYLGAQKAADEAGVTLLHRSTKDDGDIAGQIQILSYHLSQAPPDALILAPN 68 (276)
T ss_dssp CEEEEECSCSSS-T--------HHHHHHHHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHHSCCSEEEECCS
T ss_pred CeEEEEeCCCCC-h--------HHHHHHHHHHHHHHHcCCEEEEECCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 578888764332 1 11234456778888889988876532 2222 12222 236 999999775
No 142
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=47.76 E-value=65 Score=26.90 Aligned_cols=61 Identities=10% Similarity=0.147 Sum_probs=35.9
Q ss_pred CCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChhH----HHHhc-CCCCEEEEcCC
Q psy12875 18 TPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREY----YAEIL-TQINGVVIPGG 87 (308)
Q Consensus 18 ~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~----~~~~l-~~~dGlilpGG 87 (308)
+.+||+....... + ....+-..+.+.+++.|..+.......+.+. ++..+ .++||||+.+.
T Consensus 1 ~~~Igvi~~~~~~-~--------f~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 66 (271)
T 2dri_A 1 KDTIALVVSTLNN-P--------FFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPT 66 (271)
T ss_dssp CCEEEEEESCSSS-H--------HHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHTTTTEEEEEECCS
T ss_pred CcEEEEEecCCCC-H--------HHHHHHHHHHHHHHHcCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 4688988753321 1 1123445667778888998887654444321 22222 46999999654
No 143
>2gk3_A Putative cytoplasmic protein; STM3548, structural genomics, PSI, P structure initiative; 2.25A {Salmonella typhimurium} SCOP: c.23.16.9
Probab=47.09 E-value=42 Score=28.75 Aligned_cols=75 Identities=12% Similarity=0.151 Sum_probs=41.5
Q ss_pred HHHHHHHHHcCCeEEEEEcCCChhHH---HHhcCCCCEEEEcCCCCC-CCCC-CchhH--HHHHHHHHHHHHHHcCCCcc
Q psy12875 47 ASYVKNIEAAGARVVPILIGQDREYY---AEILTQINGVVIPGGGTG-FDHP-NGYAD--AGRQILHLVDKINEEGVTFP 119 (308)
Q Consensus 47 ~~~~~~l~~aG~~~~~i~~~~~~~~~---~~~l~~~dGlilpGG~~~-~~~~-~~~~~--~~~~~~e~~~~~~~~g~~~P 119 (308)
..+.++|+..|.++..++.....+.+ .+.|+++|.||+.+.+.. +... ..+.+ ......+.+++++++| ..
T Consensus 43 ~~l~~aL~~~~~~v~~~~~~~~~~~fp~~~~~L~~yDvIIl~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~V~~G--Gg 120 (256)
T 2gk3_A 43 TWLLECLRKGGVDIDYMPAHTVQIAFPESIDELNRYDVIVISDIGSNTFLLQNETFYQLKIKPNALESIKEYVKNG--GG 120 (256)
T ss_dssp HHHHHHHHHTTCEEEEECHHHHHHCCCCSHHHHHTCSEEEEESCCHHHHHSCHHHHTTCCCCCCHHHHHHHHHHTT--CE
T ss_pred HHHHHHHHhcCceEEEEecccchhhCCcChhHHhcCCEEEEeCCchhhcccccccccccccChHHHHHHHHHHHhC--CE
Confidence 34678999899998887432100111 125789999999875421 1100 00000 0023456677777755 78
Q ss_pred EEEe
Q psy12875 120 VLGV 123 (308)
Q Consensus 120 vlGI 123 (308)
+++|
T Consensus 121 ll~i 124 (256)
T 2gk3_A 121 LLMI 124 (256)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8888
No 144
>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} SCOP: c.23.16.2 PDB: 1g2i_A
Probab=46.86 E-value=11 Score=29.73 Aligned_cols=26 Identities=15% Similarity=0.309 Sum_probs=21.0
Q ss_pred hhhHhhh-cCCCCeeeeehhHHHHHHH
Q psy12875 165 FSQINEE-GVTFPVLGVCLGFELILQV 190 (308)
Q Consensus 165 ~~~i~~~-~~~~PilGiClG~Qll~~~ 190 (308)
..++++. ...+|+.+||-|.++|+.+
T Consensus 85 ~~~l~~~~~~~k~i~aiC~G~~~La~a 111 (168)
T 3l18_A 85 VMITRRMFEDDKPVASICHGPQILISA 111 (168)
T ss_dssp HHHHHHHHHTTCCEEEETTTHHHHHHT
T ss_pred HHHHHHHHHCCCEEEEECHhHHHHHHC
Confidence 4456654 5689999999999999985
No 145
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=45.36 E-value=1.1e+02 Score=25.03 Aligned_cols=61 Identities=10% Similarity=0.148 Sum_probs=37.8
Q ss_pred CEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChhH----HHHh-cCCCCEEEEcCCC
Q psy12875 19 PVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREY----YAEI-LTQINGVVIPGGG 88 (308)
Q Consensus 19 P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~----~~~~-l~~~dGlilpGG~ 88 (308)
-+||+....... + ....+-..+.+.+++.|..+.......+.+. ++.. -.++||||+.+..
T Consensus 3 ~~Igvi~~~~~~-~--------~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 68 (272)
T 3o74_A 3 RTLGFILPDLEN-P--------SYARIAKQLEQGARARGYQLLIASSDDQPDSERQLQQLFRARRCDALFVASCL 68 (272)
T ss_dssp CEEEEEESCTTC-H--------HHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCC
T ss_pred eEEEEEeCCCcC-h--------hHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCc
Confidence 578888764332 1 1122445667888889999988876554332 1222 2579999997653
No 146
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=45.21 E-value=38 Score=26.96 Aligned_cols=67 Identities=16% Similarity=0.170 Sum_probs=36.5
Q ss_pred CCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHc-----CCeEEEEEc-CCChhHHH----Hhc--CCCCEEEE
Q psy12875 17 DTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAA-----GARVVPILI-GQDREYYA----EIL--TQINGVVI 84 (308)
Q Consensus 17 ~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~a-----G~~~~~i~~-~~~~~~~~----~~l--~~~dGlil 84 (308)
.+|.++|++.-+.. ..+...+--.....+.+++. |+++..... .++.+.+. +.+ +++|-||.
T Consensus 4 ~~~rv~IistGde~------~~G~~~d~n~~~l~~~l~~~~~~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVit 77 (167)
T 1uuy_A 4 PEYKVAILTVSDTV------SAGAGPDRSGPRAVSVVDSSSEKLGGAKVVATAVVPDEVERIKDILQKWSDVDEMDLILT 77 (167)
T ss_dssp CSEEEEEEEECHHH------HTTSSCCSHHHHHHHHHHHTTTTTTSEEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEE
T ss_pred CCcEEEEEEECCcc------cCCCCccCcHHHHHHHHHhccccCCCcEEeEEEEcCCCHHHHHHHHHHHHhcCCCCEEEE
Confidence 57899999864321 01111110011234566666 888765443 34444333 333 37899999
Q ss_pred cCCCC
Q psy12875 85 PGGGT 89 (308)
Q Consensus 85 pGG~~ 89 (308)
+||-+
T Consensus 78 tGG~g 82 (167)
T 1uuy_A 78 LGGTG 82 (167)
T ss_dssp ESCCS
T ss_pred CCCCC
Confidence 99874
No 147
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=44.40 E-value=60 Score=28.52 Aligned_cols=82 Identities=17% Similarity=0.170 Sum_probs=43.1
Q ss_pred EEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCCh------------------hHH--H-HhcCC
Q psy12875 20 VIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDR------------------EYY--A-EILTQ 78 (308)
Q Consensus 20 ~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~------------------~~~--~-~~l~~ 78 (308)
.|+|...+... . ..-....+.++|++.|.++......... ... . ...++
T Consensus 6 ki~iI~n~~~~---------~-~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 75 (307)
T 1u0t_A 6 SVLLVVHTGRD---------E-ATETARRVEKVLGDNKIALRVLSAEAVDRGSLHLAPDDMRAMGVEIEVVDADQHAADG 75 (307)
T ss_dssp EEEEEESSSGG---------G-GSHHHHHHHHHHHTTTCEEEEEC-----------------------------------
T ss_pred EEEEEEeCCCH---------H-HHHHHHHHHHHHHHCCCEEEEecchhhhhhcccccccccccccccccccccccccccC
Confidence 47888776432 0 1123457889999999887654322111 000 0 13346
Q ss_pred CCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechh
Q psy12875 79 INGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLG 126 (308)
Q Consensus 79 ~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G 126 (308)
+|.+|.-||. - -+.+.++.+... ++|++||-.|
T Consensus 76 ~d~vi~~GGD--G-----------T~l~a~~~~~~~--~~pvlgi~~G 108 (307)
T 1u0t_A 76 CELVLVLGGD--G-----------TFLRAAELARNA--SIPVLGVNLG 108 (307)
T ss_dssp CCCEEEEECH--H-----------HHHHHHHHHHHH--TCCEEEEECS
T ss_pred CCEEEEEeCC--H-----------HHHHHHHHhccC--CCCEEEEeCC
Confidence 7989988882 1 123333333332 3899999766
No 148
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=44.19 E-value=64 Score=26.99 Aligned_cols=60 Identities=12% Similarity=0.185 Sum_probs=35.8
Q ss_pred CCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCC
Q psy12875 17 DTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGG 87 (308)
Q Consensus 17 ~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG 87 (308)
...+||+....... + ...-+-..+.+.+++.|..+.......+.+.. ..+ ++||||+.+.
T Consensus 7 ~~~~Igvi~~~~~~--------~-~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~-~~~-~vdgiI~~~~ 66 (277)
T 3cs3_A 7 QTNIIGVYLADYGG--------S-FYGELLEGIKKGLALFDYEMIVCSGKKSHLFI-PEK-MVDGAIILDW 66 (277)
T ss_dssp CCCEEEEEECSSCT--------T-THHHHHHHHHHHHHTTTCEEEEEESTTTTTCC-CTT-TCSEEEEECT
T ss_pred CCcEEEEEecCCCC--------h-hHHHHHHHHHHHHHHCCCeEEEEeCCCCHHHH-hhc-cccEEEEecC
Confidence 45789998753221 1 11224456677788889988876654332211 112 8999999765
No 149
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=43.25 E-value=1.2e+02 Score=25.23 Aligned_cols=43 Identities=7% Similarity=0.103 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHcCCeEEEEEcCCChhH----HHHh-cCCCCEEEEcCC
Q psy12875 45 IAASYVKNIEAAGARVVPILIGQDREY----YAEI-LTQINGVVIPGG 87 (308)
Q Consensus 45 i~~~~~~~l~~aG~~~~~i~~~~~~~~----~~~~-l~~~dGlilpGG 87 (308)
+-..+.+.+++.|..+.......+.+. ++.. -.++||||+.+.
T Consensus 19 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 66 (283)
T 2ioy_A 19 LKNGAEEKAKELGYKIIVEDSQNDSSKELSNVEDLIQQKVDVLLINPV 66 (283)
T ss_dssp HHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred HHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 445667778888998877654444321 2222 247999999653
No 150
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=42.13 E-value=22 Score=31.20 Aligned_cols=59 Identities=20% Similarity=0.290 Sum_probs=38.0
Q ss_pred HHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEech
Q psy12875 46 AASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCL 125 (308)
Q Consensus 46 ~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~ 125 (308)
.+.+.++|++.|.++...... .. .++.+|.+|.-||. - -++..++.+.. . +||+||-.
T Consensus 42 ~~~l~~~L~~~g~~v~~~~~~--~~----~~~~~DlvIvlGGD--G-----------T~L~aa~~~~~--~-~PilGIN~ 99 (278)
T 1z0s_A 42 VKRIEEALKRLEVEVELFNQP--SE----ELENFDFIVSVGGD--G-----------TILRILQKLKR--C-PPIFGINT 99 (278)
T ss_dssp HHHHHHHHHHTTCEEEEESSC--CG----GGGGSSEEEEEECH--H-----------HHHHHHTTCSS--C-CCEEEEEC
T ss_pred HHHHHHHHHHCCCEEEEcccc--cc----ccCCCCEEEEECCC--H-----------HHHHHHHHhCC--C-CcEEEECC
Confidence 456789999999988754321 11 35678999999982 1 12232332221 3 89999998
Q ss_pred h
Q psy12875 126 G 126 (308)
Q Consensus 126 G 126 (308)
|
T Consensus 100 G 100 (278)
T 1z0s_A 100 G 100 (278)
T ss_dssp S
T ss_pred C
Confidence 7
No 151
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=40.68 E-value=99 Score=25.95 Aligned_cols=65 Identities=17% Similarity=0.141 Sum_probs=37.3
Q ss_pred CCCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChh---HHHHhc--CCCCEEEEcCC
Q psy12875 16 TDTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDRE---YYAEIL--TQINGVVIPGG 87 (308)
Q Consensus 16 ~~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~---~~~~~l--~~~dGlilpGG 87 (308)
....+||+....... ..+ ...-+-..+.+.+++.|..+.......+.+ .+...+ .++||||+.+.
T Consensus 6 ~~s~~Igvv~~~~~~------~~~-~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 75 (288)
T 3gv0_A 6 GKTNVIALVLSVDEE------LMG-FTSQMVFGITEVLSTTQYHLVVTPHIHAKDSMVPIRYILETGSADGVIISKI 75 (288)
T ss_dssp -CCCEEEEECBCCCC------SSC-HHHHHHHHHHHHHTTSSCEEEECCBSSGGGTTHHHHHHHHHTCCSEEEEESC
T ss_pred CCCCEEEEEecCCcc------ccH-HHHHHHHHHHHHHHHcCCEEEEecCCcchhHHHHHHHHHHcCCccEEEEecC
Confidence 345789998764321 011 112244556677778899888765543322 222222 58999999764
No 152
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=39.12 E-value=1.1e+02 Score=26.28 Aligned_cols=61 Identities=13% Similarity=0.135 Sum_probs=36.3
Q ss_pred CCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChhH----HHHhc-CC--CCEEEEcCC
Q psy12875 18 TPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREY----YAEIL-TQ--INGVVIPGG 87 (308)
Q Consensus 18 ~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~----~~~~l-~~--~dGlilpGG 87 (308)
..+||++...... + ...-+...+.+.+++.|..+.......+.+. ++..+ .+ +||||+.+.
T Consensus 5 s~~Igvi~~~~~~-~--------~~~~~~~gi~~~a~~~g~~l~~~~~~~~~~~~~~~i~~l~~~~~~vdgiIi~~~ 72 (332)
T 2rjo_A 5 QTTLACSFRSLTN-P--------YYTAFNKGAQSFAKSVGLPYVPLTTEGSSEKGIADIRALLQKTGGNLVLNVDPN 72 (332)
T ss_dssp CCEEEEEESCTTS-H--------HHHHHHHHHHHHHHHHTCCEEEEECTTCHHHHHHHHHHHHHHTTTCEEEEECCS
T ss_pred ccEEEEEecCCCc-H--------HHHHHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHHHHHHCCCCCCEEEEeCC
Confidence 4689998753321 1 1122445667778888998887765444321 22222 46 999999765
No 153
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=38.85 E-value=80 Score=26.68 Aligned_cols=60 Identities=20% Similarity=0.182 Sum_probs=36.3
Q ss_pred CCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChhH----HHHh-cCCCCEEEEcCC
Q psy12875 18 TPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREY----YAEI-LTQINGVVIPGG 87 (308)
Q Consensus 18 ~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~----~~~~-l~~~dGlilpGG 87 (308)
+.+||+....... + ....+.+.+.+.+++.|..+...... +.+. ++.. -.++||||+.+.
T Consensus 2 ~~~Ig~i~~~~~~-~--------~~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~i~~l~~~~vdgiii~~~ 66 (306)
T 8abp_A 2 NLKLGFLVKQPEE-P--------WFQTEWKFADKAGKDLGFEVIKIAVP-DGEKTLNAIDSLAASGAKGFVICTP 66 (306)
T ss_dssp CEEEEEEESCTTS-H--------HHHHHHHHHHHHHHHHTEEEEEEECC-SHHHHHHHHHHHHHTTCCEEEEECS
T ss_pred CeEEEEEeCCCCc-h--------HHHHHHHHHHHHHHHcCCEEEEeCCC-CHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 4578888764332 1 11234556777888889888766553 3321 2222 257999999765
No 154
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=38.62 E-value=1.9e+02 Score=24.88 Aligned_cols=61 Identities=15% Similarity=0.075 Sum_probs=37.6
Q ss_pred CCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChhHH----HHh-cCCCCEEEEcCC
Q psy12875 18 TPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYY----AEI-LTQINGVVIPGG 87 (308)
Q Consensus 18 ~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~----~~~-l~~~dGlilpGG 87 (308)
..+||+....... + ...-+-..+.+.+++.|..+.......+.+.. +.. -.++||||+.+.
T Consensus 62 ~~~Igvi~~~~~~-~--------~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~ 127 (339)
T 3h5o_A 62 SRTVLVLIPSLAN-T--------VFLETLTGIETVLDAAGYQMLIGNSHYDAGQELQLLRAYLQHRPDGVLITGL 127 (339)
T ss_dssp -CEEEEEESCSTT-C--------TTHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred CCEEEEEeCCCCC-H--------HHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHcCCCCEEEEeCC
Confidence 4678888764332 1 11234456778888899998877655444322 222 257999999765
No 155
>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A
Probab=37.02 E-value=16 Score=30.72 Aligned_cols=29 Identities=10% Similarity=0.146 Sum_probs=23.1
Q ss_pred hhhhHhhh-cCCCCeeeeehhHHHHHHHhC
Q psy12875 164 LFSQINEE-GVTFPVLGVCLGFELILQVSN 192 (308)
Q Consensus 164 ~~~~i~~~-~~~~PilGiClG~Qll~~~~G 192 (308)
...++++. ...+++.+||-|-++|+.++.
T Consensus 122 l~~~l~~~~~~gk~vaaIC~G~~~La~aL~ 151 (232)
T 1vhq_A 122 LKALAQAMHQAGKPLGFMCIAPAMLPKIFD 151 (232)
T ss_dssp HHHHHHHHHHTTCCEEEETTGGGGHHHHCS
T ss_pred HHHHHHHHHHcCCEEEEECHHHHHHHHHhc
Confidence 44566664 568999999999999999854
No 156
>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans}
Probab=36.77 E-value=16 Score=29.38 Aligned_cols=27 Identities=11% Similarity=0.240 Sum_probs=20.3
Q ss_pred hhhhHhhh-cCCCCeeeeehhHHHHHHH
Q psy12875 164 LFSQINEE-GVTFPVLGVCLGFELILQV 190 (308)
Q Consensus 164 ~~~~i~~~-~~~~PilGiClG~Qll~~~ 190 (308)
...++++. ...+|+.+||-|.++|+.+
T Consensus 97 l~~~l~~~~~~gk~i~aiC~G~~~La~a 124 (190)
T 2vrn_A 97 AMKFVRDMYDAGKPIAAICHGPWSLSET 124 (190)
T ss_dssp HHHHHHHHHHTTCCEEEC-CTTHHHHHT
T ss_pred HHHHHHHHHHcCCEEEEECHhHHHHHhC
Confidence 34456654 5689999999999999985
No 157
>2fex_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; 1.70A {Agrobacterium tumefaciens} SCOP: c.23.16.2
Probab=36.72 E-value=29 Score=27.90 Aligned_cols=29 Identities=14% Similarity=0.106 Sum_probs=23.0
Q ss_pred cchhhhHhhh-cCCCCeeeeehhHHHHHHH
Q psy12875 162 SSLFSQINEE-GVTFPVLGVCLGFELILQV 190 (308)
Q Consensus 162 ~~~~~~i~~~-~~~~PilGiClG~Qll~~~ 190 (308)
+....++++. ...+++.+||-|.++|+.+
T Consensus 81 ~~l~~~l~~~~~~~k~i~aiC~G~~~La~a 110 (188)
T 2fex_A 81 ADLGGLVKRFRDRDRLVAGICAAASALGGT 110 (188)
T ss_dssp CCCHHHHHHHHHTTCEEEEETHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCEEEEECHHHHHHHHC
Confidence 3456677765 5688999999999999985
No 158
>2r47_A Uncharacterized protein MTH_862; unknown function, structural genomics, APC5901, PSI-2; 1.88A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=36.63 E-value=10 Score=30.38 Aligned_cols=52 Identities=19% Similarity=0.267 Sum_probs=32.7
Q ss_pred CCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHHhcCC
Q psy12875 77 TQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQVSNND 137 (308)
Q Consensus 77 ~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~~~gg 137 (308)
.+.|.|++.||-+ -| .+.-...++.+.+.+..+. ...|.|||. |-+..- .|.
T Consensus 83 ~~~D~vVllGGLA--MP--k~~v~~e~v~~li~ki~~~--~~kiiGvCF--ms~F~k-agW 134 (157)
T 2r47_A 83 GNVDVLVLLGGLS--MP--GIGSDIEDVKKLVEDALEE--GGELMGLCY--MDMFAR-AGW 134 (157)
T ss_dssp CCEEEEEEEGGGG--ST--TTSCCHHHHHHHHHHHEEE--EEEEEEEEE--TTHHHH-TTH
T ss_pred CCCCEEEEecccc--CC--CCCCCHHHHHHHHHHhhcC--CCCEEEEEh--HHHHHH-cCC
Confidence 4789999999953 23 2444455666766666542 356999996 444444 443
No 159
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=36.34 E-value=57 Score=27.37 Aligned_cols=65 Identities=12% Similarity=-0.007 Sum_probs=40.7
Q ss_pred CCCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCCh--hHHHHhcCCCCEEEEc
Q psy12875 16 TDTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDR--EYYAEILTQINGVVIP 85 (308)
Q Consensus 16 ~~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~--~~~~~~l~~~dGlilp 85 (308)
.|+-++.|...|.... + .......+.+.+.+.+++.|.++..+.+.... ....+.+..+|+||+-
T Consensus 24 ~M~kiLiI~gsp~~~~---s--~~s~n~~L~~~~~~~l~~~g~ev~~~dL~~~~Dv~~~~~~l~~aD~iv~~ 90 (218)
T 3rpe_A 24 AMSNVLIINAMKEFAH---S--KGALNLTLTNVAADFLRESGHQVKITTVDQGYDIESEIENYLWADTIIYQ 90 (218)
T ss_dssp CCCCEEEEECCCCBTT---B--CSHHHHHHHHHHHHHHHHTTCCEEEEEGGGCCCHHHHHHHHHHCSEEEEE
T ss_pred cCcceEEEEeCCCccc---C--CChHHHHHHHHHHHHHhhCCCEEEEEECCCccCHHHHHHHHHhCCEEEEE
Confidence 3456888888875320 0 00112235556677788889999888876432 2334467889999994
No 160
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=36.31 E-value=74 Score=27.72 Aligned_cols=72 Identities=13% Similarity=0.022 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHcC-CeEEEEEcCC---ChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccE
Q psy12875 45 IAASYVKNIEAAG-ARVVPILIGQ---DREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPV 120 (308)
Q Consensus 45 i~~~~~~~l~~aG-~~~~~i~~~~---~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~Pv 120 (308)
....+.+.|++.| +++....-.. +.+.+...|+++|.||+--.+..+. ....+.+.+++++| .++
T Consensus 21 ~~~~l~~~l~~~g~f~V~~~~d~~~~~d~~~f~~~L~~~D~vV~~~~~~~l~---------~~~~~~l~~yV~~G--ggl 89 (281)
T 4e5v_A 21 SHVVLKQILENSGRFDVDFVISPEQGKDMSGFVLDFSPYQLVVLDYNGDSWP---------EETNRRFLEYVQNG--GGV 89 (281)
T ss_dssp HHHHHHHHHHHTTSEEEEEEECCCTTSCCTTCCCCCTTCSEEEECCCSSCCC---------HHHHHHHHHHHHTT--CEE
T ss_pred HHHHHHHHHHhcCCEEEEEEeCCccccchhHHhhhhhcCCEEEEeCCCCcCC---------HHHHHHHHHHHHcC--CCE
Confidence 3456778888888 7777664321 1112223588999999833221111 23444455566655 899
Q ss_pred EEechhh
Q psy12875 121 LGVCLGF 127 (308)
Q Consensus 121 lGIC~G~ 127 (308)
+|+..+.
T Consensus 90 v~~H~a~ 96 (281)
T 4e5v_A 90 VIYHAAD 96 (281)
T ss_dssp EEEGGGG
T ss_pred EEEeccc
Confidence 9998754
No 161
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=35.12 E-value=30 Score=25.91 Aligned_cols=56 Identities=18% Similarity=0.279 Sum_probs=33.1
Q ss_pred HHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEe
Q psy12875 47 ASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGV 123 (308)
Q Consensus 47 ~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGI 123 (308)
..+...|...|+.... ..++.+|.+|+.-|... .+.++.+..+ +.+.+ .++|++||
T Consensus 18 ~~L~~~l~~~~f~~~~-----------~~I~~~~~vIvL~G~~t-----~~s~wv~~EI---~~A~~--~gkpIigV 73 (111)
T 1eiw_A 18 RVFLERLEQSGLEWRP-----------ATPEDADAVIVLAGLWG-----TRRDEILGAV---DLARK--SSKPIITV 73 (111)
T ss_dssp HHHHHHHHHHCSCEEE-----------CCSSSCSEEEEEGGGTT-----TSHHHHHHHH---HHHTT--TTCCEEEE
T ss_pred HHHHHHHhCCCCeeec-----------CccccCCEEEEEeCCCc-----CCChHHHHHH---HHHHH--cCCCEEEE
Confidence 4556666666776553 25788999998766421 1223333333 33444 45999998
No 162
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=34.85 E-value=1.2e+02 Score=25.47 Aligned_cols=61 Identities=10% Similarity=-0.002 Sum_probs=35.0
Q ss_pred CCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEE-cCCChhH----HHHh-cCCCCEEEEcCC
Q psy12875 18 TPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPIL-IGQDREY----YAEI-LTQINGVVIPGG 87 (308)
Q Consensus 18 ~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~-~~~~~~~----~~~~-l~~~dGlilpGG 87 (308)
+..||+....... + ....+...+.+.+++.|..+..+. ...+.+. ++.. -.++||||+.+.
T Consensus 4 ~~~I~~i~~~~~~-~--------~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 70 (305)
T 3g1w_A 4 NETYMMITFQSGM-D--------YWKRCLKGFEDAAQALNVTVEYRGAAQYDIQEQITVLEQAIAKNPAGIAISAI 70 (305)
T ss_dssp -CEEEEEESSTTS-T--------HHHHHHHHHHHHHHHHTCEEEEEECSSSCHHHHHHHHHHHHHHCCSEEEECCS
T ss_pred CceEEEEEccCCC-h--------HHHHHHHHHHHHHHHcCCEEEEeCCCcCCHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 4567777664332 1 112344567788888899988743 2333221 2221 247999999765
No 163
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=34.48 E-value=1.7e+02 Score=24.54 Aligned_cols=60 Identities=13% Similarity=0.154 Sum_probs=34.9
Q ss_pred CEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCC-eEEEEEcCCChhH----HHHh-cCCCCEEEEcCC
Q psy12875 19 PVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGA-RVVPILIGQDREY----YAEI-LTQINGVVIPGG 87 (308)
Q Consensus 19 P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~-~~~~i~~~~~~~~----~~~~-l~~~dGlilpGG 87 (308)
.+||++...... + ....+...+.+.+++.|. .+.......+.+. ++.. -.++||||+.+.
T Consensus 3 ~~Igvi~~~~~~-~--------~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~ 68 (309)
T 2fvy_A 3 TRIGVTIYKYDD-N--------FMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLV 68 (309)
T ss_dssp EEEEEEESCTTS-H--------HHHHHHHHHHHHHHTCTTEEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred cEEEEEeccCCc-H--------HHHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 478888653221 1 112244566777888897 7776654434321 2222 257999999764
No 164
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=34.19 E-value=2.1e+02 Score=24.60 Aligned_cols=61 Identities=13% Similarity=0.106 Sum_probs=37.0
Q ss_pred CCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChhH----HHHh-cCCCCEEEEcCC
Q psy12875 18 TPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREY----YAEI-LTQINGVVIPGG 87 (308)
Q Consensus 18 ~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~----~~~~-l~~~dGlilpGG 87 (308)
.-+||+....... + ....+-..+.+.+++.|..+.......+.+. ++.. -.++||||+.+.
T Consensus 68 ~~~Ig~i~~~~~~-~--------~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdGiIi~~~ 133 (344)
T 3kjx_A 68 VNLVAVIIPSLSN-M--------VFPEVLTGINQVLEDTELQPVVGVTDYLPEKEEKVLYEMLSWRPSGVIIAGL 133 (344)
T ss_dssp CSEEEEEESCSSS-S--------SHHHHHHHHHHHHTSSSSEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred CCEEEEEeCCCCc-H--------HHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEECC
Confidence 4689998754322 1 1122445667777788999887765544432 2222 247999999764
No 165
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=33.11 E-value=1.8e+02 Score=25.31 Aligned_cols=61 Identities=13% Similarity=0.132 Sum_probs=36.6
Q ss_pred CCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChhHH----HHh-cCCCCEEEEcCC
Q psy12875 18 TPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYY----AEI-LTQINGVVIPGG 87 (308)
Q Consensus 18 ~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~----~~~-l~~~dGlilpGG 87 (308)
..+||+....... + ...-+-..+.+.+++.|..+.......+.+.. +.. -.++||||+.+.
T Consensus 70 ~~~Igvi~~~~~~-~--------~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~ 135 (355)
T 3e3m_A 70 SGFVGLLLPSLNN-L--------HFAQTAQSLTDVLEQGGLQLLLGYTAYSPEREEQLVETMLRRRPEAMVLSYD 135 (355)
T ss_dssp -CEEEEEESCSBC-H--------HHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTCCSEEEEECS
T ss_pred CCEEEEEeCCCCc-h--------HHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCC
Confidence 4678888654322 1 11224456677888899998877655444322 221 247999999765
No 166
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=33.09 E-value=93 Score=24.70 Aligned_cols=71 Identities=6% Similarity=0.059 Sum_probs=38.8
Q ss_pred CCCEEEEeccccCCCCcccccCCCC-ccchHHHHHHHHHHcCCeEEEEEc-CCChhHHHH----h--cCCCCEEEEcCCC
Q psy12875 17 DTPVIGILAQEYTHIPSYVKAYPNY-TSYIAASYVKNIEAAGARVVPILI-GQDREYYAE----I--LTQINGVVIPGGG 88 (308)
Q Consensus 17 ~~P~IGI~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~l~~aG~~~~~i~~-~~~~~~~~~----~--l~~~dGlilpGG~ 88 (308)
.++.+||.+.-+... -.....+. .+--...+.++|++.|+++..... .++.+.+.. . ...+|-|+.+||-
T Consensus 14 ~~~~v~iitvsd~~~--~~~~~~g~i~D~ng~~L~~~L~~~G~~v~~~~iV~Dd~~~i~~al~~~~a~~~~DlVittGG~ 91 (178)
T 3iwt_A 14 KSLNFYVITISTSRY--EKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTGGT 91 (178)
T ss_dssp CCCEEEEEEECHHHH--HHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEESCC
T ss_pred CCCEEEEEEEcCCCc--cccccCCCCCcchHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEecCCc
Confidence 457899997643210 00011111 111123356889999999875544 334343332 1 2468999999987
Q ss_pred C
Q psy12875 89 T 89 (308)
Q Consensus 89 ~ 89 (308)
+
T Consensus 92 g 92 (178)
T 3iwt_A 92 G 92 (178)
T ss_dssp S
T ss_pred c
Confidence 4
No 167
>3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein struct initiative, midwest center for structural genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron vpi-5482}
Probab=32.60 E-value=22 Score=28.17 Aligned_cols=26 Identities=15% Similarity=0.138 Sum_probs=20.5
Q ss_pred hhhHhhh-cCCCCeeeeehhHHHHHHH
Q psy12875 165 FSQINEE-GVTFPVLGVCLGFELILQV 190 (308)
Q Consensus 165 ~~~i~~~-~~~~PilGiClG~Qll~~~ 190 (308)
..++++. ...+++.+||-|.++|+.+
T Consensus 94 ~~~l~~~~~~gk~i~aiC~G~~~La~a 120 (175)
T 3cne_A 94 MEVIKTFGEKGKMMIGHCAGAMMFDFT 120 (175)
T ss_dssp HHHHHHHHHTTCEEEEETTHHHHHHHT
T ss_pred HHHHHHHHHCCCEEEEECHHHHHHHHC
Confidence 3455554 5678999999999999986
No 168
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=32.39 E-value=1.2e+02 Score=25.48 Aligned_cols=63 Identities=17% Similarity=0.187 Sum_probs=39.5
Q ss_pred CCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChhHH----HH-hcCCCCEEEEcCC
Q psy12875 17 DTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYY----AE-ILTQINGVVIPGG 87 (308)
Q Consensus 17 ~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~----~~-~l~~~dGlilpGG 87 (308)
...+||+....... .. +...+-..+.+.+++.|..+.......+.+.. +. .-.++||||+.+.
T Consensus 12 ~s~~Igvi~~~~~~-----~~---~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~ 79 (301)
T 3miz_A 12 RSNTFGIITDYVST-----TP---YSVDIVRGIQDWANANGKTILIANTGGSSEREVEIWKMFQSHRIDGVLYVTM 79 (301)
T ss_dssp CCCEEEEEESSTTT-----CC---SCHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred CCCEEEEEeCCCcC-----cc---cHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEecC
Confidence 45789998764432 11 12134567788889999999887765544321 22 1247999999653
No 169
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=31.94 E-value=1.5e+02 Score=24.99 Aligned_cols=67 Identities=9% Similarity=0.110 Sum_probs=36.1
Q ss_pred CCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChhH---H-HHh-cCCCCEEEEcCC
Q psy12875 17 DTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREY---Y-AEI-LTQINGVVIPGG 87 (308)
Q Consensus 17 ~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~---~-~~~-l~~~dGlilpGG 87 (308)
...+||++...... +.+. .....-+-..+.+.+++.|..+.......+.+. + +.. -.++||||+.+.
T Consensus 6 ~s~~Igvi~~~~~~-~~~~---~~f~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~ 77 (295)
T 3hcw_A 6 QTYKIGLVLKGSEE-PIRL---NPFYINVLLGISETCNQHGYGTQTTVSNNMNDLMDEVYKMIKQRMVDAFILLYS 77 (295)
T ss_dssp CSCEEEEECSCCCH-HHHS---CHHHHHHHHHHHHHHHTTTCEEEECCCCSHHHHHHHHHHHHHTTCCSEEEESCC
T ss_pred CCcEEEEEeecCCc-cccc---ChHHHHHHHHHHHHHHHCCCEEEEEcCCCChHHHHHHHHHHHhCCcCEEEEcCc
Confidence 34789999743210 0000 001122445667778888998876554332221 1 222 257999999765
No 170
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=31.45 E-value=1.3e+02 Score=25.50 Aligned_cols=66 Identities=12% Similarity=0.178 Sum_probs=36.8
Q ss_pred CCCEEEEeccccCCCCcccccCCC-CccchHHHHHHHHHHcCCeEEEEEcCCChhH----HHHh-cCCCCEEEEcCC
Q psy12875 17 DTPVIGILAQEYTHIPSYVKAYPN-YTSYIAASYVKNIEAAGARVVPILIGQDREY----YAEI-LTQINGVVIPGG 87 (308)
Q Consensus 17 ~~P~IGI~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~----~~~~-l~~~dGlilpGG 87 (308)
...+||++...... ..... ....+-..+.+.+++.|..+.......+.+. ++.. -.++||||+.+.
T Consensus 21 ~~~~Igvi~~~~~~-----~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 92 (305)
T 3huu_A 21 KTLTIGLIQKSSAP-----EIRQNPFNSDVLNGINQACNVRGYSTRMTVSENSGDLYHEVKTMIQSKSVDGFILLYS 92 (305)
T ss_dssp CCCEEEEECSCCSH-----HHHTSHHHHHHHHHHHHHHHHHTCEEEECCCSSHHHHHHHHHHHHHTTCCSEEEESSC
T ss_pred CCCEEEEEeCCCcc-----ccccCcHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCC
Confidence 45789998765210 00000 1122445667778888998886654433221 1112 257999999765
No 171
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=30.69 E-value=70 Score=26.16 Aligned_cols=63 Identities=8% Similarity=-0.013 Sum_probs=38.1
Q ss_pred CCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCCh--hHHHHhcCCCCEEEEc
Q psy12875 18 TPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDR--EYYAEILTQINGVVIP 85 (308)
Q Consensus 18 ~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~--~~~~~~l~~~dGlilp 85 (308)
..++.|...|.... ........+.+.+.+.++++|.++..+.+...+ ..+.+.+..+|+|||-
T Consensus 13 ~~iLii~gsP~~~~-----s~~s~~~~l~~~~~~~~~~~g~~v~~~dL~~~~d~~~~~~~l~~AD~iV~~ 77 (204)
T 2amj_A 13 SNILIINGAKKFAH-----SNGQLNDTLTEVADGTLRDLGHDVRIVRADSDYDVKAEVQNFLWADVVIWQ 77 (204)
T ss_dssp CEEEEEECCC-----------CHHHHHHHHHHHHHHHHTTCEEEEEESSSCCCHHHHHHHHHHCSEEEEE
T ss_pred cCEEEEEcCCCccc-----CcCcHHHHHHHHHHHHHHHcCCEEEEEeCCccccHHHHHHHHHhCCEEEEE
Confidence 35667777765320 000112346667777888889999888876432 3444567889999994
No 172
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=30.68 E-value=2.3e+02 Score=23.76 Aligned_cols=60 Identities=10% Similarity=0.023 Sum_probs=34.9
Q ss_pred CEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChhH----HHHh-cCCCCEEEEcCC
Q psy12875 19 PVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREY----YAEI-LTQINGVVIPGG 87 (308)
Q Consensus 19 P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~----~~~~-l~~~dGlilpGG 87 (308)
.+||++...... + +..-+...+.+.+++.|..+.......+.+. ++.. -.++||||+.+.
T Consensus 3 ~~Ig~i~~~~~~-~--------~~~~~~~gi~~~a~~~g~~l~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 67 (306)
T 2vk2_A 3 LTVGFSQVGSES-G--------WRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPV 67 (306)
T ss_dssp CEEEEEECCCCS-H--------HHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHHTCSEEEECCS
T ss_pred eEEEEEeCCCCC-H--------HHHHHHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 478888764321 0 1112334566778888999887664444321 2222 247999999764
No 173
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=30.60 E-value=2.1e+02 Score=23.87 Aligned_cols=63 Identities=13% Similarity=0.113 Sum_probs=38.3
Q ss_pred CCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCC--ChhH----HHHh-cCCCCEEEEcCCC
Q psy12875 17 DTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQ--DREY----YAEI-LTQINGVVIPGGG 88 (308)
Q Consensus 17 ~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~--~~~~----~~~~-l~~~dGlilpGG~ 88 (308)
..-+||+....... + ....+...+.+.+++.|..+....... +.+. ++.. -.++||||+.+..
T Consensus 4 ~~~~Igvi~~~~~~-~--------~~~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~ 73 (304)
T 3o1i_D 4 SDEKICAIYPHLKD-S--------YWLSVNYGMVSEAEKQGVNLRVLEAGGYPNKSRQEQQLALCTQWGANAIILGTVD 73 (304)
T ss_dssp -CCEEEEEESCSCS-H--------HHHHHHHHHHHHHHHHTCEEEEEECSSTTCHHHHHHHHHHHHHHTCSEEEECCSS
T ss_pred CCcEEEEEeCCCCC-c--------HHHHHHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 34688988764322 1 112344567788888899998887664 4321 2221 2479999997653
No 174
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=30.28 E-value=1.4e+02 Score=24.86 Aligned_cols=64 Identities=11% Similarity=0.240 Sum_probs=39.8
Q ss_pred CCCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChhHH----HHh-cCCCCEEEEcCCC
Q psy12875 16 TDTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYY----AEI-LTQINGVVIPGGG 88 (308)
Q Consensus 16 ~~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~----~~~-l~~~dGlilpGG~ 88 (308)
....+||++...... + ....+...+.+.+++.|..+.......+.+.. +.. -.++||||+.+..
T Consensus 6 ~~~~~Igvv~~~~~~-~--------~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 74 (291)
T 3egc_A 6 KRSNVVGLIVSDIEN-V--------FFAEVASGVESEARHKGYSVLLANTAEDIVREREAVGQFFERRVDGLILAPSE 74 (291)
T ss_dssp -CCCEEEEEESCTTS-H--------HHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCS
T ss_pred CCCcEEEEEECCCcc-h--------HHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 345789998764322 1 11224456778888899999888765554321 221 2579999997764
No 175
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=29.88 E-value=1.3e+02 Score=23.43 Aligned_cols=43 Identities=21% Similarity=0.337 Sum_probs=31.5
Q ss_pred cchHHHHHHHHHHcCCeEEEEEcCCC--hhHHHHhcCCCCEEEEc
Q psy12875 43 SYIAASYVKNIEAAGARVVPILIGQD--REYYAEILTQINGVVIP 85 (308)
Q Consensus 43 ~~i~~~~~~~l~~aG~~~~~i~~~~~--~~~~~~~l~~~dGlilp 85 (308)
..+.+.+.+.+++.|..+..+..... ..++...+.++|+|||-
T Consensus 19 ~~iA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~d~ii~G 63 (159)
T 3fni_A 19 DRLAQAIINGITKTGVGVDVVDLGAAVDLQELRELVGRCTGLVIG 63 (159)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEESSSCCCHHHHHHHHHTEEEEEEE
T ss_pred HHHHHHHHHHHHHCCCeEEEEECcCcCCHHHHHHHHHhCCEEEEE
Confidence 45677788888889999888887653 34444556789998874
No 176
>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ...
Probab=29.79 E-value=24 Score=28.69 Aligned_cols=26 Identities=15% Similarity=0.197 Sum_probs=20.8
Q ss_pred hhhHhhh-cCCCCeeeeehhHHHHHHH
Q psy12875 165 FSQINEE-GVTFPVLGVCLGFELILQV 190 (308)
Q Consensus 165 ~~~i~~~-~~~~PilGiClG~Qll~~~ 190 (308)
..++++. ...+++.+||-|.++|+.+
T Consensus 89 ~~~l~~~~~~gk~i~aiC~G~~~La~a 115 (197)
T 2rk3_A 89 KEILKEQENRKGLIATICAGPTALLAH 115 (197)
T ss_dssp HHHHHHHHHTTCEEEEETTTHHHHHHT
T ss_pred HHHHHHHHHcCCEEEEECHHHHHHHHC
Confidence 4455654 5688999999999999986
No 177
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=29.75 E-value=1.9e+02 Score=24.18 Aligned_cols=43 Identities=9% Similarity=0.135 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHcCCeEEEEE--cCCChhH----HHHhc-CCCCEEEEcCC
Q psy12875 45 IAASYVKNIEAAGARVVPIL--IGQDREY----YAEIL-TQINGVVIPGG 87 (308)
Q Consensus 45 i~~~~~~~l~~aG~~~~~i~--~~~~~~~----~~~~l-~~~dGlilpGG 87 (308)
+...+.+.+++.|..+.... ...+.+. ++..+ .++||||+.+.
T Consensus 19 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~ 68 (288)
T 1gud_A 19 MKKGIEDEAKTLGVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPL 68 (288)
T ss_dssp HHHHHHHHHHHHTCCEEEEECSSTTCHHHHHHHHHHHHTSSEEEEEECCS
T ss_pred HHHHHHHHHHHcCCEEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 44566777888898887765 3333221 22222 46999999654
No 178
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=29.41 E-value=2e+02 Score=23.97 Aligned_cols=62 Identities=16% Similarity=0.145 Sum_probs=35.8
Q ss_pred CCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChh-------HHHHh-cCCCCEEEEcCC
Q psy12875 17 DTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDRE-------YYAEI-LTQINGVVIPGG 87 (308)
Q Consensus 17 ~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~-------~~~~~-l~~~dGlilpGG 87 (308)
...+||++...... + ...-+-..+.+.+++.|..+.......+.+ .++.. -.++||||+.+.
T Consensus 7 ~~~~Ig~i~~~~~~-~--------~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 76 (290)
T 2rgy_A 7 QLGIIGLFVPTFFG-S--------YYGTILKQTDLELRAVHRHVVVATGCGESTPREQALEAVRFLIGRDCDGVVVISH 76 (290)
T ss_dssp -CCEEEEECSCSCS-H--------HHHHHHHHHHHHHHHTTCEEEEECCCSSSCHHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred CCCeEEEEeCCCCC-c--------hHHHHHHHHHHHHHHCCCEEEEEeCCCchhhhhhHHHHHHHHHhcCccEEEEecC
Confidence 34689998753221 1 112244566777888899887665433221 12222 257999999765
No 179
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=29.35 E-value=2.5e+02 Score=23.39 Aligned_cols=61 Identities=18% Similarity=0.257 Sum_probs=36.7
Q ss_pred CCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChhH----HHHh-cCCCCEEEEcCC
Q psy12875 18 TPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREY----YAEI-LTQINGVVIPGG 87 (308)
Q Consensus 18 ~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~----~~~~-l~~~dGlilpGG 87 (308)
.-+||++...... + ...-+-..+.+.+++.|..+.......+.+. ++.. -.++||||+.+.
T Consensus 16 s~~Igvi~~~~~~-~--------~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 81 (289)
T 2fep_A 16 TTTVGVIIPDISS-I--------FYSELARGIEDIATMYKYNIILSNSDQNMEKELHLLNTMLGKQVDGIVFMGG 81 (289)
T ss_dssp CCEEEEEESCTTS-H--------HHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred CCeEEEEeCCCCC-c--------hHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecC
Confidence 4689998753221 1 1122445667788889998887765444321 2222 257999999765
No 180
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=29.12 E-value=2.9e+02 Score=24.14 Aligned_cols=88 Identities=11% Similarity=0.052 Sum_probs=49.0
Q ss_pred CEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChh--HH-HH-hcCCCCEEEEcCCCCCCCCC
Q psy12875 19 PVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDRE--YY-AE-ILTQINGVVIPGGGTGFDHP 94 (308)
Q Consensus 19 P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~--~~-~~-~l~~~dGlilpGG~~~~~~~ 94 (308)
..++|...|.... +...-+...+.++|+++|.++.........+ ++ .+ ..+.+|.|++.|| |-
T Consensus 25 ~~i~vI~NP~sg~--------~~~~~~~~~i~~~L~~~g~~~~~~~t~~~~~a~~~~~~~~~~~~d~vvv~GG--DG--- 91 (337)
T 2qv7_A 25 KRARIIYNPTSGK--------EQFKRELPDALIKLEKAGYETSAYATEKIGDATLEAERAMHENYDVLIAAGG--DG--- 91 (337)
T ss_dssp EEEEEEECTTSTT--------SCHHHHHHHHHHHHHHTTEEEEEEECCSTTHHHHHHHHHTTTTCSEEEEEEC--HH---
T ss_pred ceEEEEECCCCCC--------CchHHHHHHHHHHHHHcCCeEEEEEecCcchHHHHHHHHhhcCCCEEEEEcC--ch---
Confidence 4578888876531 1111223567889999998877665333211 22 22 2346899999998 21
Q ss_pred CchhHHHHHHHHHHHHHHHcCCCccEEEechhh
Q psy12875 95 NGYADAGRQILHLVDKINEEGVTFPVLGVCLGF 127 (308)
Q Consensus 95 ~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~ 127 (308)
-+.+.+....+.+...|+.+|=.|-
T Consensus 92 --------Tv~~v~~~l~~~~~~~pl~iIP~GT 116 (337)
T 2qv7_A 92 --------TLNEVVNGIAEKPNRPKLGVIPMGT 116 (337)
T ss_dssp --------HHHHHHHHHTTCSSCCEEEEEECSS
T ss_pred --------HHHHHHHHHHhCCCCCcEEEecCCc
Confidence 1223333332222457888887765
No 181
>2ioj_A Hypothetical protein AF_1212; NYSGXRC, PFAM:DRTGG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Archaeoglobus fulgidus} SCOP: c.98.2.2
Probab=28.93 E-value=1.2e+02 Score=22.87 Aligned_cols=69 Identities=12% Similarity=0.082 Sum_probs=38.8
Q ss_pred HHHHHHHHcCCeEEEEEcCCChhHHHHhc--CCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEech
Q psy12875 48 SYVKNIEAAGARVVPILIGQDREYYAEIL--TQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCL 125 (308)
Q Consensus 48 ~~~~~l~~aG~~~~~i~~~~~~~~~~~~l--~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~ 125 (308)
.+.+.++..-..+++++-+..+. ....+ .+..+||++||-. +. ..+.+.++ + .++||+-+=.
T Consensus 43 ~~~~~~~~~~~~l~I~~G~r~~~-~l~a~~~~~~~~iIlt~g~~---~~-------~~i~~~A~---~--~~ipvl~t~~ 106 (139)
T 2ioj_A 43 SALRYLREARNAALVTGGDRSDL-LLTALEMPNVRCLILTGNLE---PV-------QLVLTKAE---E--RGVPVILTGH 106 (139)
T ss_dssp HHHHHHHTCSSEEEEEETTCHHH-HHHHTTCTTEEEEEEETTCC---CC-------HHHHHHHH---H--HTCCEEECSS
T ss_pred HHHHHHhcCCCEEEEEcCCHHHH-HHHHHhCCCCcEEEEcCCCC---CC-------HHHHHHHH---H--CCCeEEEECC
Confidence 45566664323556555444332 23334 3788999999952 21 24445444 3 3499998887
Q ss_pred hhhHHHH
Q psy12875 126 GFELILQ 132 (308)
Q Consensus 126 G~Qll~~ 132 (308)
..--.+.
T Consensus 107 ~T~~~~~ 113 (139)
T 2ioj_A 107 DTLTAVS 113 (139)
T ss_dssp CHHHHHH
T ss_pred CHHHHHH
Confidence 6644443
No 182
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=28.83 E-value=66 Score=27.41 Aligned_cols=77 Identities=13% Similarity=0.038 Sum_probs=43.6
Q ss_pred CEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCCh------------hHHHHhcCCCCEEEEcC
Q psy12875 19 PVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDR------------EYYAEILTQINGVVIPG 86 (308)
Q Consensus 19 P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~------------~~~~~~l~~~dGlilpG 86 (308)
-+++|..++... .....+.+.+.+.+++.|.++..+.+..-+ ..+.+.+..+|||||.-
T Consensus 36 kIliI~GS~r~~---------s~t~~La~~~~~~l~~~g~eve~idL~~~pl~~~d~~~~d~~~~l~~~i~~AD~iI~~s 106 (247)
T 2q62_A 36 RILILYGSLRTV---------SYSRLLAEEARRLLEFFGAEVKVFDPSGLPLPDAAPVSHPKVQELRELSIWSEGQVWVS 106 (247)
T ss_dssp EEEEEECCCCSS---------CHHHHHHHHHHHHHHHTTCEEEECCCTTCCCTTSSCTTSHHHHHHHHHHHHCSEEEEEE
T ss_pred eEEEEEccCCCC---------CHHHHHHHHHHHHHhhCCCEEEEEEhhcCCCCcCCCCCCHHHHHHHHHHHHCCEEEEEe
Confidence 466676665421 112345566677788889988877654321 23344677899999943
Q ss_pred CCCCCCCCCchhHHHHHHHHHH
Q psy12875 87 GGTGFDHPNGYADAGRQILHLV 108 (308)
Q Consensus 87 G~~~~~~~~~~~~~~~~~~e~~ 108 (308)
..... .+....+.+++++
T Consensus 107 P~Yn~----sipa~LKn~iD~l 124 (247)
T 2q62_A 107 PERHG----AMTGIMKAQIDWI 124 (247)
T ss_dssp ECSSS----SCCHHHHHHHHTS
T ss_pred CCCCC----CccHHHHHHHHHh
Confidence 32111 2334445556654
No 183
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=28.80 E-value=37 Score=31.02 Aligned_cols=69 Identities=17% Similarity=0.122 Sum_probs=39.3
Q ss_pred chHHHHHHHHHHcCCeEEEEEcCCChhH--------------------HHHhcCCCCEEEEcCCCCCCCCCCchhHHHHH
Q psy12875 44 YIAASYVKNIEAAGARVVPILIGQDREY--------------------YAEILTQINGVVIPGGGTGFDHPNGYADAGRQ 103 (308)
Q Consensus 44 ~i~~~~~~~l~~aG~~~~~i~~~~~~~~--------------------~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~ 103 (308)
.....+.+||.+.|..+.+-.-...... .++..+.+|-+|.-||. - .
T Consensus 54 ~~~~~l~~~L~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlvI~lGGD--G----T------- 120 (365)
T 3pfn_A 54 QPFKELCTHLMEENMIVYVEKKVLEDPAIASDESFGAVKKKFCTFREDYDDISNQIDFIICLGGD--G----T------- 120 (365)
T ss_dssp HHHHHHHHHHHHTSCEEEEEHHHHHSHHHHHCSTTHHHHHHCEEECTTTCCCTTTCSEEEEESST--T----H-------
T ss_pred HHHHHHHHHHHHCCCEEEEehHHhhhhccccccccccccccccccccChhhcccCCCEEEEEcCh--H----H-------
Confidence 3456788999999987764321100000 00122468999999983 1 1
Q ss_pred HHHHHHHHHHcCCCccEEEechhh
Q psy12875 104 ILHLVDKINEEGVTFPVLGVCLGF 127 (308)
Q Consensus 104 ~~e~~~~~~~~g~~~PvlGIC~G~ 127 (308)
++..++.+.. ...||+||-.|.
T Consensus 121 ~L~aa~~~~~--~~~PvlGiN~G~ 142 (365)
T 3pfn_A 121 LLYASSLFQG--SVPPVMAFHLGS 142 (365)
T ss_dssp HHHHHHHCSS--SCCCEEEEESSS
T ss_pred HHHHHHHhcc--CCCCEEEEcCCC
Confidence 2333333333 358999999874
No 184
>2kyr_A Fructose-like phosphotransferase enzyme IIB compo; ALP protein, structural genomics, PSI-2; NMR {Escherichia coli}
Probab=28.13 E-value=64 Score=24.16 Aligned_cols=59 Identities=10% Similarity=0.014 Sum_probs=38.1
Q ss_pred CCCCEEEEeccccCCCCcccccCCCCccchH-HHHHHHHHHcCCeEEEE-------EcCCChhHHHHhcCCCCEEEEcCC
Q psy12875 16 TDTPVIGILAQEYTHIPSYVKAYPNYTSYIA-ASYVKNIEAAGARVVPI-------LIGQDREYYAEILTQINGVVIPGG 87 (308)
Q Consensus 16 ~~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~l~~aG~~~~~i-------~~~~~~~~~~~~l~~~dGlilpGG 87 (308)
|+.-+++|++||+.- -.+|+. +.+.++-++.|..+.+- ....+.+ .++..|+||+-+.
T Consensus 4 m~mkIvaVTaCptGi----------AHTyMAAeaL~~aA~~~G~~ikVEtqGs~G~~n~Lt~~----~I~~Ad~VIiA~d 69 (111)
T 2kyr_A 4 MSKKLIALCACPMGL----------AHTFMAAQALEEAAVEAGYEVKIETQGADGIQNRLTAQ----DIAEATIIIHSVA 69 (111)
T ss_dssp CCCEEEEEEEESSCH----------HHHHHHHHHHHHHHHHTSSEEEEEEEETTEEESCCCHH----HHHHCSEEEEEES
T ss_pred ccccEEEEEcCCCcH----------HHHHHHHHHHHHHHHHCCCeEEEEecCCCCcCCCCCHH----HHHhCCEEEEEeC
Confidence 456799999998763 135654 44556667788876652 2222233 4667899999775
Q ss_pred C
Q psy12875 88 G 88 (308)
Q Consensus 88 ~ 88 (308)
.
T Consensus 70 ~ 70 (111)
T 2kyr_A 70 V 70 (111)
T ss_dssp S
T ss_pred C
Confidence 4
No 185
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=27.67 E-value=2.9e+02 Score=23.61 Aligned_cols=62 Identities=15% Similarity=0.146 Sum_probs=38.1
Q ss_pred CCCEEEEeccc--cCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChhH----HHHh-cCCCCEEEEcCC
Q psy12875 17 DTPVIGILAQE--YTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREY----YAEI-LTQINGVVIPGG 87 (308)
Q Consensus 17 ~~P~IGI~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~----~~~~-l~~~dGlilpGG 87 (308)
...+||++... ... + ....+-..+.+.+++.|..+.......+.+. ++.. -.++||||+.+.
T Consensus 60 ~~~~Igvi~~~~~~~~--------~-~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 128 (338)
T 3dbi_A 60 STQTLGLVVTNTLYHG--------I-YFSELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLDLRCDAIMIYPR 128 (338)
T ss_dssp CCSEEEEEECTTTTST--------T-HHHHHHHHHHHHHHHTTCEEEEEECTTSHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred CCCEEEEEecCCcccC--------h-hHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCC
Confidence 35789988764 211 0 1123445677888889999887775544332 1222 247999999765
No 186
>3dzv_A 4-methyl-5-(beta-hydroxyethyl)thiazole kinase; NP_816404.1, structural genomics, joint center for structural genomics, JCSG; HET: ADP; 2.57A {Enterococcus faecalis}
Probab=27.41 E-value=2.4e+02 Score=24.34 Aligned_cols=35 Identities=14% Similarity=0.234 Sum_probs=27.5
Q ss_pred HHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEE-cCC
Q psy12875 50 VKNIEAAGARVVPILIGQDREYYAEILTQINGVVI-PGG 87 (308)
Q Consensus 50 ~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlil-pGG 87 (308)
.+.+-..|+.|++.. ..+++.+.++.+|++++ +|=
T Consensus 33 AN~~La~GasP~M~~---~~~e~~e~~~~a~alvIn~G~ 68 (273)
T 3dzv_A 33 ANALLYIDAKPIMAD---DPREFPQMFQQTSALVLNLGH 68 (273)
T ss_dssp HHHHHHTTCEEECCC---CGGGHHHHHTTCSEEEEECCS
T ss_pred HHHHHHcCCchhhcC---CHHHHHHHHHHCCeEEEecCC
Confidence 467888999998653 45677778889999999 664
No 187
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=26.98 E-value=90 Score=25.43 Aligned_cols=56 Identities=13% Similarity=0.106 Sum_probs=37.4
Q ss_pred CEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCC-------ChhHHHHhcCCCCEEEEc
Q psy12875 19 PVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQ-------DREYYAEILTQINGVVIP 85 (308)
Q Consensus 19 P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~-------~~~~~~~~l~~~dGlilp 85 (308)
-++.|.+.|... .+-+++.+.+.+++.|.++..+.+.. +-....+.+..+|+|||-
T Consensus 3 kiLiI~gsp~~~-----------~s~l~~~l~~~~~~~g~ev~~~dL~~~~~~~~~dv~~~~~~l~~AD~iv~~ 65 (192)
T 3f2v_A 3 KTLIILAHPNIS-----------QSTVHKHWSDAVRQHTDRFTVHELYAVYPQGKIDVAAEQKLIETHDSLVWQ 65 (192)
T ss_dssp CEEEEECCTTGG-----------GCSHHHHHHHHHTTCTTTEEEEEHHHHCTTCCCCHHHHHHHHHTSSSEEEE
T ss_pred EEEEEEeCCCcc-----------HHHHHHHHHHHHHhCCCeEEEEEchhcCCCCchhHHHHHHHHHhCCEEEEE
Confidence 467777776542 13467778888888898888776532 222334467889999983
No 188
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=26.36 E-value=2.7e+02 Score=22.90 Aligned_cols=62 Identities=15% Similarity=0.146 Sum_probs=36.1
Q ss_pred CCCEEEEeccc--cCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChhH----HHHh-cCCCCEEEEcCC
Q psy12875 17 DTPVIGILAQE--YTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREY----YAEI-LTQINGVVIPGG 87 (308)
Q Consensus 17 ~~P~IGI~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~----~~~~-l~~~dGlilpGG 87 (308)
...+||++... ... + ....+...+.+.+++.|..+.......+.+. ++.. -.++||||+.+.
T Consensus 18 ~~~~Ig~i~~~~~~~~--------~-~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~ 86 (296)
T 3brq_A 18 STQTLGLVVTNTLYHG--------I-YFSELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLDLRCDAIMIYPR 86 (296)
T ss_dssp -CCEEEEEECGGGCC-----------CHHHHHHHHHHHHHHTTCEEEEECCTTSHHHHHHHHHHHHHTTCSEEEEECS
T ss_pred CCceEEEEeCCcccCC--------c-hHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEecC
Confidence 34789998764 221 1 1122445667778888998876654433321 2222 257999999765
No 189
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=26.27 E-value=62 Score=27.95 Aligned_cols=61 Identities=10% Similarity=0.016 Sum_probs=37.8
Q ss_pred HHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCC
Q psy12875 47 ASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGV 116 (308)
Q Consensus 47 ~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~ 116 (308)
..+.++|+..|..|..++...-... ...|+++|.||++--.. ........+.+++++++|.
T Consensus 20 ~~l~~aL~~~g~~V~~i~~~~~~~~-~~~L~~yDvIIl~d~~~--------~~l~~~~~~~L~~yV~~GG 80 (259)
T 3rht_A 20 GYLAGLMTSWQWEFDYIPSHVGLDV-GELLAKQDLVILSDYPA--------ERMTAQAIDQLVTMVKAGC 80 (259)
T ss_dssp HHHHHHHHHTTCCCEEECTTSCBCS-SHHHHTCSEEEEESCCG--------GGBCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCceEEEecccccccC-hhHHhcCCEEEEcCCcc--------ccCCHHHHHHHHHHHHhCC
Confidence 3557899999999998875432211 12578999999973221 1112345666677777653
No 190
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=26.16 E-value=2.9e+02 Score=23.58 Aligned_cols=61 Identities=18% Similarity=0.221 Sum_probs=36.1
Q ss_pred CCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChhH----HHHh-cCCCCEEEEcCC
Q psy12875 18 TPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREY----YAEI-LTQINGVVIPGG 87 (308)
Q Consensus 18 ~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~----~~~~-l~~~dGlilpGG 87 (308)
..+||++...... + ....+-..+.+.+++.|..+.......+.+. ++.. -.++||||+.+.
T Consensus 63 ~~~Ig~i~~~~~~-~--------~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~ 128 (332)
T 2o20_A 63 TTTVGVILPTITS-T--------YFAAITRGVDDIASMYKYNMILANSDNDVEKEEKVLETFLSKQVDGIVYMGS 128 (332)
T ss_dssp CCEEEEEESCTTC-H--------HHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECSS
T ss_pred CCEEEEEeCCCCC-c--------HHHHHHHHHHHHHHHcCCEEEEEECCCChHHHHHHHHHHHhCCCCEEEEeCC
Confidence 4678888753221 0 1122445666777888999887765444321 2222 257999999765
No 191
>2zuv_A Lacto-N-biose phosphorylase; beta-alpha-barrel, TIM barrel, glycosyltransferase, transferase; HET: NDG; 1.85A {Bifidobacterium longum} PDB: 2zus_A* 2zuu_A* 2zut_A* 2zuw_A*
Probab=25.49 E-value=98 Score=30.80 Aligned_cols=97 Identities=18% Similarity=0.165 Sum_probs=58.7
Q ss_pred CCCEEEEeccccCCCCcccc-c------CCCCccchHHHHHHHHHHcCCeEEEEEcCCChhHH-H-HhcCCCCEEEEcCC
Q psy12875 17 DTPVIGILAQEYTHIPSYVK-A------YPNYTSYIAASYVKNIEAAGARVVPILIGQDREYY-A-EILTQINGVVIPGG 87 (308)
Q Consensus 17 ~~P~IGI~~~~~~~~~~~~~-~------~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~-~-~~l~~~dGlilpGG 87 (308)
....|||+-++... -+|.. + ++.-.+| .-+.++|..++..+..++.. ++ + ..++++|.||.+|-
T Consensus 437 ~~~kVAVLnsWGkl-RSW~~~~vaHak~~kq~ysy--~GilEALsg~~~dV~FIsfd----DI~e~e~L~d~DVIIn~G~ 509 (759)
T 2zuv_A 437 GELNVAILNSWGKM-RSWMAFTVAHALPNKQTYSY--YGILESLSGMRVNVRFISFD----DVLAHGIDSDIDVIINGGP 509 (759)
T ss_dssp CCSEEEEEESSGGG-GTTTTTCSSTTCCCTTTHHH--HHHHHHHHTSSSEEEEEEHH----HHHHHCCCTTCCEEEEEEC
T ss_pred cCceEEEEecCCCC-cccccccccccccccccccH--HHHHHHHhcCCCceEEecHH----HhccccccccCCEEEecCc
Confidence 34789999877543 12221 1 1111133 23789999999999999843 23 2 46889999999983
Q ss_pred C-CCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEec
Q psy12875 88 G-TGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVC 124 (308)
Q Consensus 88 ~-~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC 124 (308)
. +.+.....+.+ ..+.+.+|+++.+| ==++||.
T Consensus 510 A~TalSgg~~W~~--p~~~~aLR~fV~~G--GgLIgVG 543 (759)
T 2zuv_A 510 VDTAFTGGDVWTN--PKLVETVRAWVRGG--GAFVGVG 543 (759)
T ss_dssp TTSTTTCGGGGGC--HHHHHHHHHHHHTT--CEEEEEE
T ss_pred chhcccCccccCC--HHHHHHHHHHHHcC--CcEEEeC
Confidence 2 22222111222 57888899999876 3456554
No 192
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=24.21 E-value=3.2e+02 Score=23.14 Aligned_cols=61 Identities=7% Similarity=-0.022 Sum_probs=34.6
Q ss_pred CCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEE-EcCCChh----HHHHh-cCCCCEEEEcCC
Q psy12875 18 TPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPI-LIGQDRE----YYAEI-LTQINGVVIPGG 87 (308)
Q Consensus 18 ~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i-~~~~~~~----~~~~~-l~~~dGlilpGG 87 (308)
+..||++...... + +...+...+.+.+++.|..+... +...+.+ .++.. -.++||||+.+.
T Consensus 3 ~~~Igvi~~~~~~-~--------~~~~~~~g~~~~~~~~g~~~~~~~~~~~d~~~q~~~i~~li~~~vdgiii~~~ 69 (316)
T 1tjy_A 3 AERIAFIPKLVGV-G--------FFTSGGNGAQEAGKALGIDVTYDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAV 69 (316)
T ss_dssp CCEEEEECSSSSS-H--------HHHHHHHHHHHHHHHHTCEEEECCCSSCCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred CCEEEEEeCCCCC-h--------HHHHHHHHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 3689998754321 1 11224456677788889887754 2233322 12222 257999999654
No 193
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=23.88 E-value=1.6e+02 Score=24.45 Aligned_cols=61 Identities=5% Similarity=-0.021 Sum_probs=35.0
Q ss_pred CCEEEEeccccC--CCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcC--CChhH----HHHh-cCCCCEEEEcCC
Q psy12875 18 TPVIGILAQEYT--HIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIG--QDREY----YAEI-LTQINGVVIPGG 87 (308)
Q Consensus 18 ~P~IGI~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~--~~~~~----~~~~-l~~~dGlilpGG 87 (308)
..+||+...... . + ....+-..+.+.+++.|..+.....+ .+.+. ++.. -.++||||+.+.
T Consensus 5 ~~~Ig~v~~~~~~~~-~--------~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~ 74 (289)
T 3brs_A 5 QYYMICIPKVLDDSS-D--------FWSVLVEGAQMAAKEYEIKLEFMAPEKEEDYLVQNELIEEAIKRKPDVILLAAA 74 (289)
T ss_dssp CCEEEEECSCCCSSS-H--------HHHHHHHHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHTCCSEEEECCS
T ss_pred CcEEEEEeCCCCCCc-h--------HHHHHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 468999875332 1 0 11223455667778889888766542 23221 2222 257999999765
No 194
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=23.64 E-value=1.6e+02 Score=24.22 Aligned_cols=61 Identities=15% Similarity=0.168 Sum_probs=35.8
Q ss_pred CCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChhH----HHHh-cCCCCEEEEcCC
Q psy12875 18 TPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREY----YAEI-LTQINGVVIPGG 87 (308)
Q Consensus 18 ~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~----~~~~-l~~~dGlilpGG 87 (308)
..+||+....... + ...-+-..+.+.+++.|..+.......+.+. ++.. -.++||||+.+.
T Consensus 3 s~~Ig~i~~~~~~-~--------~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~ 68 (275)
T 3d8u_A 3 AYSIALIIPSLFE-K--------ACAHFLPSFQQALNKAGYQLLLGYSDYSIEQEEKLLSTFLESRPAGVVLFGS 68 (275)
T ss_dssp -CEEEEEESCSSC-H--------HHHHHHHHHHHHHHHTSCEECCEECTTCHHHHHHHHHHHHTSCCCCEEEESS
T ss_pred ceEEEEEeCCCcc-c--------cHHHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 3578888753221 1 1112445667788888998877665444322 2222 257999999765
No 195
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=23.45 E-value=3.2e+02 Score=22.71 Aligned_cols=67 Identities=6% Similarity=0.022 Sum_probs=37.9
Q ss_pred CCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCC--hhHHHHhc--CCCCEEEEcCCC
Q psy12875 17 DTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQD--REYYAEIL--TQINGVVIPGGG 88 (308)
Q Consensus 17 ~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~--~~~~~~~l--~~~dGlilpGG~ 88 (308)
...+||+....... ........-+-..+.+.+++.|..+........ ...+.+.+ .++||||+.+..
T Consensus 5 ~s~~Igvi~~~~~~-----~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~ 75 (294)
T 3qk7_A 5 RTDAIALAYPSRPR-----VLNNSTFLEMISWIGIELGKRGLDLLLIPDEPGEKYQSLIHLVETRRVDALIVAHTQ 75 (294)
T ss_dssp CCCEEEEEEESCSG-----GGSCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCCHHHHHHHHHTCCSEEEECSCC
T ss_pred ccceEEEEecCCCc-----cccChhHHHHHHHHHHHHHHCCCEEEEEeCCChhhHHHHHHHHHcCCCCEEEEeCCC
Confidence 34689998763211 000001122445667788889999887765431 11222222 479999997753
No 196
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=23.43 E-value=1.7e+02 Score=24.69 Aligned_cols=63 Identities=10% Similarity=0.104 Sum_probs=37.6
Q ss_pred CCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChhH----HHHh-cCCCCEEEEcCCC
Q psy12875 17 DTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREY----YAEI-LTQINGVVIPGGG 88 (308)
Q Consensus 17 ~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~----~~~~-l~~~dGlilpGG~ 88 (308)
..-+||+....... + ...-+-..+.+.+++.|..+.......+.+. ++.. -.++||||+.+..
T Consensus 14 ~s~~Igvi~~~~~~-~--------~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 81 (303)
T 3kke_A 14 RSGTIGLIVPDVNN-A--------VFADMFSGVQMAASGHSTDVLLGQIDAPPRGTQQLSRLVSEGRVDGVLLQRRE 81 (303)
T ss_dssp ---CEEEEESCTTS-T--------THHHHHHHHHHHHHHTTCCEEEEECCSTTHHHHHHHHHHHSCSSSEEEECCCT
T ss_pred CCCEEEEEeCCCcC-h--------HHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCcEEEEecCC
Confidence 34679988764332 1 1123445677888889999988776544332 2222 2479999997753
No 197
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=23.41 E-value=1e+02 Score=26.41 Aligned_cols=55 Identities=13% Similarity=0.109 Sum_probs=34.5
Q ss_pred HHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEech
Q psy12875 46 AASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCL 125 (308)
Q Consensus 46 ~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~ 125 (308)
.+.+.++|++.|.++. .+++|.||.-||. - -+.+.++.......++|++||-.
T Consensus 17 ~~~l~~~l~~~g~~v~--------------~~~~D~vv~lGGD--G-----------T~l~aa~~~~~~~~~~PilGIn~ 69 (272)
T 2i2c_A 17 RLNMIAGFGEYDMEYD--------------DVEPEIVISIGGD--G-----------TFLSAFHQYEERLDEIAFIGIHT 69 (272)
T ss_dssp HHHHHHHHTTSSCEEC--------------SSSCSEEEEEESH--H-----------HHHHHHHHTGGGTTTCEEEEEES
T ss_pred HHHHHHHHHHCCCEeC--------------CCCCCEEEEEcCc--H-----------HHHHHHHHHhhcCCCCCEEEEeC
Confidence 4566788888888751 2468999999982 1 13333343333201489999977
Q ss_pred hh
Q psy12875 126 GF 127 (308)
Q Consensus 126 G~ 127 (308)
|.
T Consensus 70 G~ 71 (272)
T 2i2c_A 70 GH 71 (272)
T ss_dssp SS
T ss_pred CC
Confidence 63
No 198
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=23.26 E-value=1e+02 Score=25.59 Aligned_cols=44 Identities=9% Similarity=-0.045 Sum_probs=28.4
Q ss_pred cchHHHHHHHHHHc-CCeEEEEEcCC-------------------------ChhHHHHhcCCCCEEEEcC
Q psy12875 43 SYIAASYVKNIEAA-GARVVPILIGQ-------------------------DREYYAEILTQINGVVIPG 86 (308)
Q Consensus 43 ~~i~~~~~~~l~~a-G~~~~~i~~~~-------------------------~~~~~~~~l~~~dGlilpG 86 (308)
..+.+.+.+.+++. |.++..+.+.. +-..+.+.+..+|+|||.-
T Consensus 18 ~~la~~i~~~l~~~~g~~v~~~dl~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~AD~iI~~s 87 (242)
T 1sqs_A 18 LEYTKRLSSIISSRNNVDISFRTPFNSELEISNSDSEELFKKGIDRQSNADDGGVIKKELLESDIIIISS 87 (242)
T ss_dssp HHHHHHHHHHHHHHSCCEEEEECTTTCCCCCCCCCHHHHHHHCCCSSTTTSTHHHHHHHHHHCSEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEcccCCCCCCCchHHhhccCCCCccchHHHHHHHHHHHHHCCEEEEEc
Confidence 34666777788777 99887775432 1122334567899999843
No 199
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=23.02 E-value=73 Score=25.75 Aligned_cols=43 Identities=21% Similarity=0.147 Sum_probs=30.1
Q ss_pred cchHHHHHHHHHHcCCeEEEEEcCCC--------------------h--hHHHHhcCCCCEEEEc
Q psy12875 43 SYIAASYVKNIEAAGARVVPILIGQD--------------------R--EYYAEILTQINGVVIP 85 (308)
Q Consensus 43 ~~i~~~~~~~l~~aG~~~~~i~~~~~--------------------~--~~~~~~l~~~dGlilp 85 (308)
..+.+.+.+.+++.|.++..+.+... + ......+..+|+|||-
T Consensus 21 ~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ii~g 85 (211)
T 1ydg_A 21 YAMAQEAAEAGRAAGAEVRLLKVRETAPQDVIDGQDAWKANIEAMKDVPEATPADLEWAEAIVFS 85 (211)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCCCSCHHHHTTCHHHHHHHHHTTTSCBCCHHHHHHCSEEEEE
T ss_pred HHHHHHHHHHHhcCCCEEEEEeccccccchhhhcccccccccccccchhHHHHHHHHHCCEEEEE
Confidence 45777788888888999988876552 0 1223356679999984
No 200
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=22.86 E-value=2.5e+02 Score=24.33 Aligned_cols=43 Identities=9% Similarity=0.132 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHcCCeEEEEEcCCChhH----HHHh-cCCCCEEEEcCC
Q psy12875 45 IAASYVKNIEAAGARVVPILIGQDREY----YAEI-LTQINGVVIPGG 87 (308)
Q Consensus 45 i~~~~~~~l~~aG~~~~~i~~~~~~~~----~~~~-l~~~dGlilpGG 87 (308)
+-..+.+.+++.|..+.......+.+. ++.. -.++||||+.+.
T Consensus 84 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~ 131 (348)
T 3bil_A 84 MVTEIQSTASKAGLATIITNSNEDATTMSGSLEFLTSHGVDGIICVPN 131 (348)
T ss_dssp HHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHHHHTTCSCEEECCC
T ss_pred HHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 445666777888998887765444321 2222 257999999765
No 201
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=22.81 E-value=2.6e+02 Score=23.19 Aligned_cols=62 Identities=15% Similarity=0.246 Sum_probs=37.3
Q ss_pred CCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChhH----HHHh-cCCCCEEEEcCC
Q psy12875 17 DTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREY----YAEI-LTQINGVVIPGG 87 (308)
Q Consensus 17 ~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~----~~~~-l~~~dGlilpGG 87 (308)
...+||++...... + ...-+-..+.+.+++.|..+.......+.+. ++.. -.++||||+.+.
T Consensus 7 ~~~~Igvi~~~~~~-~--------~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~ 73 (285)
T 3c3k_A 7 KTGMLLVMVSNIAN-P--------FCAAVVKGIEKTAEKNGYRILLCNTESDLARSRSCLTLLSGKMVDGVITMDA 73 (285)
T ss_dssp CCCEEEEEESCTTS-H--------HHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHTHHHHTTCCSEEEECCC
T ss_pred CCCEEEEEeCCCCC-c--------hHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 34689998753221 1 1122445667788888999887765444322 1222 247999999765
No 202
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=22.33 E-value=78 Score=25.44 Aligned_cols=44 Identities=7% Similarity=0.093 Sum_probs=28.7
Q ss_pred cchHHHHHHH-HHHcCCeEEEEEcCCCh--------------hHHHHhcCCCCEEEEcC
Q psy12875 43 SYIAASYVKN-IEAAGARVVPILIGQDR--------------EYYAEILTQINGVVIPG 86 (308)
Q Consensus 43 ~~i~~~~~~~-l~~aG~~~~~i~~~~~~--------------~~~~~~l~~~dGlilpG 86 (308)
..+.+.+.+. +++.|.++..+.+...+ ..+.+.+..+|+|||.-
T Consensus 19 ~~la~~i~~~~l~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~i~~aD~ii~~s 77 (197)
T 2vzf_A 19 AKLAEYALAHVLARSDSQGRHIHVIDLDPKALLRGDLSNAKLKEAVDATCNADGLIVAT 77 (197)
T ss_dssp HHHHHHHHHHHHHHSSEEEEEEEGGGSCHHHHHHTCTTSHHHHHHHHHHHHCSEEEEEE
T ss_pred HHHHHHHHHHHHHHCCCeEEEEEccccCchhhcccccCcHHHHHHHHHHHHCCEEEEEe
Confidence 3566666777 78789888888764321 12233567899999943
No 203
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=22.28 E-value=2.4e+02 Score=23.35 Aligned_cols=62 Identities=11% Similarity=0.143 Sum_probs=33.6
Q ss_pred CCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEE-EcCCChh----HHHHh-cCCCCEEEEcCC
Q psy12875 17 DTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPI-LIGQDRE----YYAEI-LTQINGVVIPGG 87 (308)
Q Consensus 17 ~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i-~~~~~~~----~~~~~-l~~~dGlilpGG 87 (308)
...+||++...... + ....+...+.+.+++.|..+... ....+.+ .++.. -.++||||+.+.
T Consensus 7 ~~~~Ig~i~~~~~~-~--------~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~ 74 (290)
T 3clk_A 7 SSNVIAAVVSSVRT-N--------FAQQILDGIQEEAHKNGYNLIIVYSGSADPEEQKHALLTAIERPVMGILLLSI 74 (290)
T ss_dssp -CCEEEEECCCCSS-S--------HHHHHHHHHHHHHHTTTCEEEEEC----------CHHHHHHSSCCSEEEEESC
T ss_pred cCCEEEEEeCCCCC-h--------HHHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEecc
Confidence 34789998753221 1 11224456667778889888766 4322221 12332 357999999765
No 204
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=21.78 E-value=2e+02 Score=23.86 Aligned_cols=62 Identities=13% Similarity=0.314 Sum_probs=37.7
Q ss_pred CCCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCe-EEEEEcCCChhH----HHHh-cCCCCEEEEcC
Q psy12875 16 TDTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGAR-VVPILIGQDREY----YAEI-LTQINGVVIPG 86 (308)
Q Consensus 16 ~~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~-~~~i~~~~~~~~----~~~~-l~~~dGlilpG 86 (308)
....+||+....... + ...-+...+.+.+++.|.. +.......+.+. ++.. -.++||||+.+
T Consensus 8 ~~~~~Igvi~~~~~~-~--------~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~ 75 (277)
T 3hs3_A 8 KKSKMIGIIIPDLNN-R--------FYAQIIDGIQEVIQKEGYTALISFSTNSDVKKYQNAIINFENNNVDGIITSA 75 (277)
T ss_dssp CCCCEEEEEESCTTS-H--------HHHHHHHHHHHHHHHTTCEEEEEECSSCCHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred CCCCEEEEEeCCCCC-h--------hHHHHHHHHHHHHHHCCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEcc
Confidence 345789998764332 1 1122445677888889999 666654444332 2221 25799999976
No 205
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=21.46 E-value=1.8e+02 Score=23.69 Aligned_cols=61 Identities=13% Similarity=0.154 Sum_probs=36.0
Q ss_pred CCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChhH----HHHh-cCCCCEEEEcCC
Q psy12875 18 TPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREY----YAEI-LTQINGVVIPGG 87 (308)
Q Consensus 18 ~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~----~~~~-l~~~dGlilpGG 87 (308)
..+||+....... + ...-+-..+.+.+++.|..+.......+.+. ++.. -.++||||+.+.
T Consensus 2 s~~Igvi~~~~~~-~--------~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~ 67 (255)
T 1byk_A 2 DKVVAIIVTRLDS-L--------SENLAVQTMLPAFYEQGYDPIMMESQFSPQLVAEHLGVLKRRNIDGVVLFGF 67 (255)
T ss_dssp CCEEEEEESCTTC-H--------HHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred CCEEEEEeCCCCC-c--------cHHHHHHHHHHHHHHcCCEEEEEeCCCcHHHHHHHHHHHHhcCCCEEEEecC
Confidence 3578888753221 1 1112445667778888999887765444321 2222 257999999764
No 206
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=21.26 E-value=2.4e+02 Score=20.43 Aligned_cols=42 Identities=14% Similarity=0.164 Sum_probs=29.3
Q ss_pred cchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCC
Q psy12875 43 SYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGG 87 (308)
Q Consensus 43 ~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG 87 (308)
..+.+.+.+.+++.|.++..+.....+. ..+.++|+|++-.+
T Consensus 14 ~~~a~~i~~~l~~~g~~v~~~~~~~~~~---~~l~~~d~vi~g~p 55 (137)
T 2fz5_A 14 EAMANEIEAAVKAAGADVESVRFEDTNV---DDVASKDVILLGCP 55 (137)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEETTSCCH---HHHHTCSEEEEECC
T ss_pred HHHHHHHHHHHHhCCCeEEEEEcccCCH---HHHhcCCEEEEEcc
Confidence 4566777888888899988887654321 24568899998543
No 207
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=20.83 E-value=89 Score=24.78 Aligned_cols=43 Identities=14% Similarity=0.101 Sum_probs=28.7
Q ss_pred cchHHHHHHHHHHcCCeEEEEEcCCCh----------------hHHHHhcCCCCEEEEc
Q psy12875 43 SYIAASYVKNIEAAGARVVPILIGQDR----------------EYYAEILTQINGVVIP 85 (308)
Q Consensus 43 ~~i~~~~~~~l~~aG~~~~~i~~~~~~----------------~~~~~~l~~~dGlilp 85 (308)
..+.+.+.+.+++.|.++..+.+.... ......+.++|+|||-
T Consensus 20 ~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~g 78 (200)
T 2a5l_A 20 AEMARQIARGVEQGGFEARVRTVPAVSTECEAVAPDIPAEGALYATLEDLKNCAGLALG 78 (200)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEBCCCEEC-------------CCBCCHHHHHTCSEEEEE
T ss_pred HHHHHHHHHHHhhCCCEEEEEEhhhccchhhhhccccccccCchhhHHHHHHCCEEEEE
Confidence 456777888888889888877654410 0112356789999984
No 208
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=20.81 E-value=3.9e+02 Score=22.67 Aligned_cols=41 Identities=7% Similarity=-0.033 Sum_probs=27.6
Q ss_pred HHHHHHHHHcCCeEEEEEcCCChhH---HHHhcCCCCEEEEcCC
Q psy12875 47 ASYVKNIEAAGARVVPILIGQDREY---YAEILTQINGVVIPGG 87 (308)
Q Consensus 47 ~~~~~~l~~aG~~~~~i~~~~~~~~---~~~~l~~~dGlilpGG 87 (308)
+.+.+..+..|.+++........+. +.....+.|+++++..
T Consensus 159 ~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~l~~~~d~i~~~~d 202 (302)
T 3lkv_A 159 ELLKLSAAKHGIKLVEATALKSADVQSATQAIAEKSDVIYALID 202 (302)
T ss_dssp HHHHHHHHHTTCEEEEEECSSGGGHHHHHHHHHTTCSEEEECSC
T ss_pred HHHHHHHHHcCCEEEEEecCChHHHHHHHHhccCCeeEEEEeCC
Confidence 4456677788999887776654432 2335578999998754
No 209
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=20.72 E-value=3.6e+02 Score=22.28 Aligned_cols=61 Identities=7% Similarity=0.095 Sum_probs=33.8
Q ss_pred CCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEE-cCCChhH----HHHh-cCCCCEEEEcCC
Q psy12875 18 TPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPIL-IGQDREY----YAEI-LTQINGVVIPGG 87 (308)
Q Consensus 18 ~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~-~~~~~~~----~~~~-l~~~dGlilpGG 87 (308)
..+||+....... + ....+...+.+.+++.|..+..+. ...+.+. ++.. -.++||||+.+.
T Consensus 4 ~~~Ig~i~~~~~~-~--------~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~ 70 (303)
T 3d02_A 4 EKTVVNISKVDGM-P--------WFNRMGEGVVQAGKEFNLNASQVGPSSTDAPQQVKIIEDLIARKVDAITIVPN 70 (303)
T ss_dssp CEEEEEECSCSSC-H--------HHHHHHHHHHHHHHHTTEEEEEECCSSSCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred ceEEEEEeccCCC-h--------HHHHHHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 4578888753321 0 112244566777888898876443 2223221 2222 257999998764
No 210
>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis}
Probab=20.58 E-value=57 Score=26.83 Aligned_cols=27 Identities=11% Similarity=0.399 Sum_probs=21.9
Q ss_pred hhhhHhhh-cCCCCeeeeehhHHHHHHH
Q psy12875 164 LFSQINEE-GVTFPVLGVCLGFELILQV 190 (308)
Q Consensus 164 ~~~~i~~~-~~~~PilGiClG~Qll~~~ 190 (308)
...++++. ...+++.+||-|.++|+.+
T Consensus 82 l~~~l~~~~~~gk~iaaiC~G~~~La~a 109 (206)
T 3f5d_A 82 LLHFVKTAFQKNIPIAAICGAVDFLAKN 109 (206)
T ss_dssp HHHHHHHHHHTTCCEEEETHHHHHHHHT
T ss_pred HHHHHHHHHHcCCEEEEECHHHHHHHHc
Confidence 45566664 5689999999999999986
No 211
>3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isopr biosynthesis; 1.90A {Ehrlichia chaffeensis}
Probab=20.36 E-value=60 Score=27.60 Aligned_cols=28 Identities=14% Similarity=0.324 Sum_probs=22.5
Q ss_pred hhhhHhhh-cCCCCeeeeehhHHHHHHHh
Q psy12875 164 LFSQINEE-GVTFPVLGVCLGFELILQVS 191 (308)
Q Consensus 164 ~~~~i~~~-~~~~PilGiClG~Qll~~~~ 191 (308)
...++++. ...+|+.+||-|-.+|+.+-
T Consensus 140 l~~~lr~~~~~gk~IaaIC~G~~~La~ag 168 (242)
T 3l3b_A 140 FKNAVREFYNAKKPIGAVCISPAVVVALL 168 (242)
T ss_dssp HHHHHHHHHHTTCCEEEETTHHHHHHHHH
T ss_pred HHHHHHHHHHcCCEEEEECHHHHHHHHhC
Confidence 34566654 56899999999999999876
No 212
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=20.10 E-value=1.9e+02 Score=23.99 Aligned_cols=63 Identities=10% Similarity=0.070 Sum_probs=35.8
Q ss_pred CCCCEEEEecccc-CCCCcccccCCCCccchHHHHHHHHHHc-CCeEEEEEcC---CChhH----HHHh-cCCCCEEEEc
Q psy12875 16 TDTPVIGILAQEY-THIPSYVKAYPNYTSYIAASYVKNIEAA-GARVVPILIG---QDREY----YAEI-LTQINGVVIP 85 (308)
Q Consensus 16 ~~~P~IGI~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~l~~a-G~~~~~i~~~---~~~~~----~~~~-l~~~dGlilp 85 (308)
...-+||+..... .. + ....+...+.+.+++. |..+...... .+.+. ++.. -.++||||+.
T Consensus 6 ~~~~~Igvi~~~~~~~-~--------~~~~~~~gi~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~ 76 (304)
T 3gbv_A 6 NKKYTFACLLPKHLEG-E--------YWTDVQKGIREAVTTYSDFNISANITHYDPYDYNSFVATSQAVIEEQPDGVMFA 76 (304)
T ss_dssp -CCEEEEEEEECCCTT-S--------HHHHHHHHHHHHHHHTGGGCEEEEEEEECSSCHHHHHHHHHHHHTTCCSEEEEC
T ss_pred CCcceEEEEecCCCCc-h--------HHHHHHHHHHHHHHHHHhCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEEC
Confidence 3457899887643 22 1 1123445667778887 7777665431 12221 2222 3579999998
Q ss_pred CC
Q psy12875 86 GG 87 (308)
Q Consensus 86 GG 87 (308)
+.
T Consensus 77 ~~ 78 (304)
T 3gbv_A 77 PT 78 (304)
T ss_dssp CS
T ss_pred CC
Confidence 65
No 213
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=20.02 E-value=1.7e+02 Score=24.29 Aligned_cols=64 Identities=6% Similarity=0.044 Sum_probs=34.7
Q ss_pred CCCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChh---H-HHHh-cCCCCEEEEcCC
Q psy12875 16 TDTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDRE---Y-YAEI-LTQINGVVIPGG 87 (308)
Q Consensus 16 ~~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~---~-~~~~-l~~~dGlilpGG 87 (308)
....+||++......++ ....+-..+.+.+++.|..+.......+.+ . ++.. -.++||||+.+.
T Consensus 9 ~~~~~Igvi~~~~~~~~--------~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 77 (289)
T 3g85_A 9 QSKPTIALYWSSDISVN--------IISRFLRGLQSKLAKQNYNYNVVICPYKTDCLHLEKGISKENSFDAAIIANI 77 (289)
T ss_dssp --CCEEEEEEETTSCGG--------GHHHHHHHHHHHHHHTTTCSEEEEEEECTTCGGGCGGGSTTTCCSEEEESSC
T ss_pred CCCceEEEEeccccchH--------HHHHHHHHHHHHHHHcCCeEEEEecCCCchhHHHHHHHHhccCCCEEEEecC
Confidence 34578999876221111 112244566778888898776654332211 1 1111 236999999765
No 214
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=20.01 E-value=1.4e+02 Score=24.59 Aligned_cols=61 Identities=20% Similarity=0.266 Sum_probs=36.1
Q ss_pred CCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChhHH----HH-hcCCCCEEEEcC
Q psy12875 17 DTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYY----AE-ILTQINGVVIPG 86 (308)
Q Consensus 17 ~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~----~~-~l~~~dGlilpG 86 (308)
...+||+....... + ...-+...+.+.+++.|..+.......+.+.. +. .-.++||||+.+
T Consensus 7 ~~~~Ig~i~~~~~~-~--------~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~dgiIi~~ 72 (277)
T 3e61_A 7 KSKLIGLLLPDMSN-P--------FFTLIARGVEDVALAHGYQVLIGNSDNDIKKAQGYLATFVSHNCTGMISTA 72 (277)
T ss_dssp ---CEEEEESCTTS-H--------HHHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHHHHTTCSEEEECG
T ss_pred CCCEEEEEECCCCC-H--------HHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEec
Confidence 34678988754322 1 11224456677888899998887765554321 22 125799999976
No 215
>3hpd_A Hydroxyethylthiazole kinase; alpha-beta, ATP binding, transferase, ATP-binding, M metal-binding, nucleotide-binding, thiamine biosynthesis; 1.85A {Pyrococcus horikoshii}
Probab=20.01 E-value=1.5e+02 Score=25.68 Aligned_cols=59 Identities=27% Similarity=0.318 Sum_probs=37.7
Q ss_pred HHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEE-cCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEE
Q psy12875 50 VKNIEAAGARVVPILIGQDREYYAEILTQINGVVI-PGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVL 121 (308)
Q Consensus 50 ~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlil-pGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~Pvl 121 (308)
.+.+-..|+.|++... .++..+.....|++++ +|-. + ..+.+......+.+++.+ +|+.
T Consensus 31 AN~lLA~GasPiMa~~---~~E~~e~~~~a~al~iNiGtl---~-----~~~~~~m~~A~~~A~~~~--~PvV 90 (265)
T 3hpd_A 31 ANALLALGASPVMAHA---EEELEEMIRLADAVVINIGTL---D-----SGWRRSMVKATEIANELG--KPIV 90 (265)
T ss_dssp HHHHHHHTCEEEECCC---TTTHHHHHHHCSEEEEECTTC---C-----HHHHHHHHHHHHHHHHHT--CCEE
T ss_pred HHHHHHhCCchhhcCC---HHHHHHHHHHCCeEEEECCCC---C-----hHHHHHHHHHHHHHHHcC--CCEE
Confidence 4677889999987543 3455566667899999 5532 2 223334555556667754 8876
Done!