RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12875
(308 letters)
>1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1
Length = 315
Score = 139 bits (351), Expect = 2e-39
Identities = 75/291 (25%), Positives = 113/291 (38%), Gaps = 64/291 (21%)
Query: 19 PVIGILAQEYTHIPSYVKAYPNY-TSYIAASYVKNIEAAGARVVPILIGQDREYYAEILT 77
P+IGIL Q K NY YIAASYVK +E+AGARVVP+ + + Y +
Sbjct: 31 PIIGILMQ-----KCRNKVMKNYGRYYIAASYVKYLESAGARVVPVRLDLTEKDYEILFK 85
Query: 78 QINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQVSNND 137
ING++ PGG + YA + +L + ++G FPV G CLGFE + + +
Sbjct: 86 SINGILFPGGSVDLR-RSDYAKVAKIFYNLSIQSFDDGDYFPVWGTCLGFEELSLLISG- 143
Query: 138 TDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDF 197
+ V + L F G S +F
Sbjct: 144 ECLLTATDTVDVAMPLNFTGGQLHSRMFQNFP---------------------------- 175
Query: 198 RKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGL 257
+ L + + + + H + K L
Sbjct: 176 ---------------------TELLLSLAVEPLTANF-----HKWSLSVKNFTMNEK--L 207
Query: 258 TETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNAYEWTESQHNPHS 308
+ +N+LT + EF+ST+E +YP+ G+Q+HPEK YEW H+
Sbjct: 208 KKFFNVLTTNTDGKIEFISTMEGYKYPVYGVQWHPEKAPYEWKNLDGISHA 258
>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II,
structural genomics, protein structure initiative; 2.30A
{Listeria innocua}
Length = 254
Score = 58.1 bits (141), Expect = 4e-10
Identities = 27/126 (21%), Positives = 45/126 (35%), Gaps = 23/126 (18%)
Query: 19 PVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILI-GQDREYYAEILT 77
PVIGI + +Y YV I+ G PI + D + ++
Sbjct: 5 PVIGITGNRLVKGVDVFYGHR--VTYTQQRYVDAIQKVGG--FPIALPIDDPSTAVQAIS 60
Query: 78 QINGVVIPGGGTGFD-HPNGY----------ADAGRQI--LHLVDKINEEGVTFPVLGVC 124
++G+++ GG D P Y R + LV + G P+ +C
Sbjct: 61 LVDGLLLTGGQ---DITPQLYLEEPSQEIGAYFPPRDSYEIALVRAALDAGK--PIFAIC 115
Query: 125 LGFELI 130
G +L+
Sbjct: 116 RGMQLV 121
Score = 31.9 bits (73), Expect = 0.18
Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 278 VEHKEYP--IVGIQFHPEKNAYEWTESQ 303
VE P +G+Q+HPE ES+
Sbjct: 203 VEGDNLPSWYLGVQWHPELMFQTDPESE 230
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan
biosynthesis, glutamine amidotransferase, allosteric
interaction, lyase; 2.50A {Sulfolobus solfataricus}
SCOP: c.23.16.1
Length = 195
Score = 41.3 bits (98), Expect = 1e-04
Identities = 11/16 (68%), Positives = 14/16 (87%)
Query: 278 VEHKEYPIVGIQFHPE 293
+ H+EYPI G+QFHPE
Sbjct: 162 IHHEEYPIYGVQFHPE 177
Score = 34.0 bits (79), Expect = 0.037
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 15/58 (25%)
Query: 80 NGVVI-PGGGTGFDHPNGYADAG---RQILHLVDKINEEGVTFPVLGVCLGFELILQV 133
+ ++I PG GT P D G I +L + P+LGVCLG + I
Sbjct: 47 DRLIISPGPGT----PEKREDIGVSLDVIKYLGKRT-------PILGVCLGHQAIGYA 93
Score = 27.0 bits (61), Expect = 6.8
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 168 INEEGVTFPVLGVCLGFELILQV 190
I G P+LGVCLG + I
Sbjct: 71 IKYLGKRTPILGVCLGHQAIGYA 93
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.9 bits (100), Expect = 1e-04
Identities = 55/327 (16%), Positives = 95/327 (29%), Gaps = 98/327 (29%)
Query: 20 VIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQD--R-EYYAEI- 75
V +L Y + S +K S + Y++ + + + R + Y ++
Sbjct: 83 VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL-YNDNQVFAKYNVSRLQPYLKLR 141
Query: 76 -----LTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVT----FPV----LG 122
L V+I G G G+ + +D V F + L
Sbjct: 142 QALLELRPAKNVLIDGVL-GS---------GKTWV-ALDVCLSYKVQCKMDFKIFWLNLK 190
Query: 123 VCLGFELILQVSNN-----DTDFRKSCK-VQQVNLNLKFLPGAKRSSLFSQINEEGVTFP 176
C E +L++ D ++ + L + + R L S+ E
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN----- 245
Query: 177 VLGVCLGFELIL-QVSNNDT--DFRKSCKV------QQVNLNLKFLPGAKRS-------- 219
CL L+L V N F SCK+ +QV FL A +
Sbjct: 246 ----CL---LVLLNVQNAKAWNAFNLSCKILLTTRFKQV---TDFLSAATTTHISLDHHS 295
Query: 220 ---------SLFSQVPSKYIKKFYQK---------PLTHNNHIWCITRQDMIKYGLTETW 261
SL KY+ Q P + I R + + + W
Sbjct: 296 MTLTPDEVKSLL----LKYLDCRPQDLPREVLTTNPRRL-SIIAESIRDGLATW---DNW 347
Query: 262 NILTLSKYK-----SWEFVSTVEHKEY 283
+ K S + E+++
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPAEYRKM 374
Score = 29.8 bits (66), Expect = 1.3
Identities = 17/124 (13%), Positives = 32/124 (25%), Gaps = 30/124 (24%)
Query: 187 ILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWC 246
IL V + F + + V K S+ S + I
Sbjct: 21 ILSV--FEDAFVDNFDCKDVQDMPK--------SILS---KEEIDHIIMSKDA------- 60
Query: 247 ITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNA----YEWTES 302
++ + W +L+ + +FV V Y + E+
Sbjct: 61 VSGTLRL------FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE 114
Query: 303 QHNP 306
Q +
Sbjct: 115 QRDR 118
>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved
protein, structural genomics; 1.90A {Methanocaldococcus
jannaschii}
Length = 186
Score = 40.4 bits (95), Expect = 2e-04
Identities = 20/95 (21%), Positives = 38/95 (40%), Gaps = 19/95 (20%)
Query: 47 ASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQI-- 104
+ + I+ AG + + E L I+ ++IPGG + G+ +
Sbjct: 13 EEHEEAIKKAGYEAKKV-----KR--VEDLEGIDALIIPGGEST--------AIGKLMKK 57
Query: 105 LHLVDKINEEGVTFPVLGVCLGFELILQVSNNDTD 139
L++KI P+LG C G L+ + + +
Sbjct: 58 YGLLEKIKNSN--LPILGTCAGMVLLSKGTGINQI 90
Score = 30.8 bits (70), Expect = 0.36
Identities = 22/156 (14%), Positives = 52/156 (33%), Gaps = 41/156 (26%)
Query: 155 FLPG---------AKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQ 205
+PG K+ L +I P+LG C G L+ + + + + +
Sbjct: 42 IIPGGESTAIGKLMKKYGLLEKIKNSN--LPILGTCAGMVLLSKGTGINQILLELMDIT- 98
Query: 206 VNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMI-----KYGLTET 260
KR++ QV S F ++ + + + + +
Sbjct: 99 ----------VKRNAYGRQVDS-----FEKEIEFKD-----LGKVYGVFIRAPVVDKILS 138
Query: 261 WNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNA 296
++ +++ + + V+ + + FHPE +
Sbjct: 139 DDVEVIARDG--DKIVGVKQG--KYMALSFHPELSE 170
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase;
HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1
PDB: 1i7q_B 1i7s_B*
Length = 192
Score = 40.5 bits (96), Expect = 2e-04
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 278 VEHKEYPIVGIQFHPE 293
V H + G QFHPE
Sbjct: 156 VRHDADRVCGFQFHPE 171
Score = 29.0 bits (66), Expect = 1.3
Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 18/57 (31%)
Query: 81 GVVI-PGGGTGFDHPNGYADAG---RQILHLVDKINEEGVTFPVLGVCLGFELILQV 133
+++ PG G P+ +AG + L K+ P++G+CLG + I++
Sbjct: 50 VLMLSPGPGV----PS---EAGCMPELLTRLRGKL-------PIIGICLGHQAIVEA 92
>1gpw_B Amidotransferase HISH; lyase/transferase, complex
(lyase/transferase), histidine biosynthesis,
glutaminase, glutamine amidotransferase; 2.4A
{Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A
2wjz_B
Length = 201
Score = 38.6 bits (91), Expect = 0.001
Identities = 30/134 (22%), Positives = 45/134 (33%), Gaps = 46/134 (34%)
Query: 176 PVLGVCLGFELILQVS--NNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKF 233
V+GVCLG +L+ + S L + G + K
Sbjct: 79 YVVGVCLGMQLLFEESEEAPGVK------------GLSLIEGN-------------VVKL 113
Query: 234 YQKPLTH---NNHIWCITRQDMIK----------YGLTETWNILTLSKYKSWEFVSTVEH 280
+ L H N I+ +D + E ++L ++Y F S V
Sbjct: 114 RSRRLPHMGWNEVIF----KDTFPNGYYYFVHTYRAVCEEEHVLGTTEYDGEIFPSAVRK 169
Query: 281 KEYPIVGIQFHPEK 294
I+G QFHPEK
Sbjct: 170 GR--ILGFQFHPEK 181
>2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis,
structural genomics, NPPSFA; 1.90A {Thermus
thermophilus}
Length = 191
Score = 38.4 bits (89), Expect = 0.001
Identities = 12/97 (12%), Positives = 32/97 (32%), Gaps = 19/97 (19%)
Query: 47 ASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQI-- 104
+ + ++ G + E L + +++PGG + G+
Sbjct: 15 REHKEALKRLGIEAKEV-------RKKEHLEGLKALIVPGGEST--------TIGKLARE 59
Query: 105 LHLVDKINE--EGVTFPVLGVCLGFELILQVSNNDTD 139
+ D++ + E + + G C G + + +
Sbjct: 60 YGIEDEVRKRVEEGSLALFGTCAGAIWLAKEIVGYPE 96
Score = 33.3 bits (76), Expect = 0.047
Identities = 15/139 (10%), Positives = 40/139 (28%), Gaps = 21/139 (15%)
Query: 159 AKRSSLFSQINE--EGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGA 216
A+ + ++ + E + + G C G + + + + ++ + G
Sbjct: 57 AREYGIEDEVRKRVEEGSLALFGTCAGAIWLAKEIVGYPEQPRLGVLEAWVE--RNAFGR 114
Query: 217 KRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVS 276
+ S + + + F+ R + L++ +
Sbjct: 115 QVESFEEDLEVEGLGSFHGV----FIRAPVFRRLG---------EGVEVLARLG--DLPV 159
Query: 277 TVEHKEYPIVGIQFHPEKN 295
V ++ FHPE
Sbjct: 160 LVRQG--KVLASSFHPELT 176
>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2,
predicted glutamine amidotransferase, PSI; HET: MSE;
1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1
Length = 219
Score = 38.3 bits (89), Expect = 0.002
Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 18/94 (19%)
Query: 47 ASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQI-- 104
+V+ IEA GA V + ++ +E L ++G+V+PGG + R I
Sbjct: 36 REHVRAIEACGAEAVIV-----KK--SEQLEGLDGLVLPGGEST--------TMRRLIDR 80
Query: 105 LHLVDKINEEGVT-FPVLGVCLGFELILQVSNND 137
L++ + + P+ G C G L+ +
Sbjct: 81 YGLMEPLKQFAAAGKPMFGTCAGLILLAKRIVGY 114
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf;
substrate channeling, amidotransferase, TIM-barrel AS A
SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae}
SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A
1ox4_A
Length = 555
Score = 38.2 bits (89), Expect = 0.003
Identities = 28/130 (21%), Positives = 49/130 (37%), Gaps = 22/130 (16%)
Query: 176 PVLGVCLGFELILQVSNNDTDFRK----SCKVQQVNLNLKFLP-------GAKRSSLFSQ 224
P++G+ +G + + S K+ + + + K +P + F
Sbjct: 81 PIMGIXVGLQALFAGSVESPKSTGLNYIDFKLSRFDDSEKPVPEIGWNSCIPSENLFFGL 140
Query: 225 VPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEYP 284
P K ++Y H+ I + K + W + +KY S EF++ V
Sbjct: 141 DPYK---RYY---FVHSFA--AILNSEKKKNLENDGW-KIAKAKYGSEEFIAAVNKNN-- 189
Query: 285 IVGIQFHPEK 294
I QFHPEK
Sbjct: 190 IFATQFHPEK 199
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.1 bits (88), Expect = 0.004
Identities = 31/227 (13%), Positives = 59/227 (25%), Gaps = 77/227 (33%)
Query: 30 HIPSYVKAYP----NYTSY-----IAASY--VKNIEAAGARVVPIL-----IGQDREY-- 71
H SY + T + +++++ G +G EY
Sbjct: 1713 HSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLG---EYAA 1769
Query: 72 ---YAEILT------------QINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGV 116
A++++ V +P G + A ++ ++E +
Sbjct: 1770 LASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRV---AASFSQEAL 1826
Query: 117 TFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFP 176
++ +V V+ VN N + Q
Sbjct: 1827 Q----------YVVERVGKRTGWL-----VEIVNYN---VEN-------QQY-------- 1853
Query: 177 VLGVCLGFELI-LQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLF 222
V G +L L N +F K K+ + L LF
Sbjct: 1854 ---VAAG-DLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGHLF 1896
Score = 27.3 bits (60), Expect = 8.4
Identities = 12/50 (24%), Positives = 17/50 (34%), Gaps = 14/50 (28%)
Query: 29 THI----PSYVKAYPNYTSYIAASYVKNIEAAGARVVP---ILIGQDREY 71
THI P T +N + G RV+ + I D +Y
Sbjct: 499 THILDFGPGGASGLGVLTH-------RNKDGTGVRVIVAGTLDINPDDDY 541
>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich,
rossmann fold, glutaminase; 1.73A {Bacillus subtilis}
SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*
Length = 196
Score = 36.6 bits (85), Expect = 0.005
Identities = 18/87 (20%), Positives = 36/87 (41%), Gaps = 18/87 (20%)
Query: 47 ASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQI-- 104
++ IEA GA + + + E L +++G+++PGG + R I
Sbjct: 14 REHIHAIEACGAAGLVV-----KR--PEQLNEVDGLILPGGEST--------TMRRLIDT 58
Query: 105 LHLVDKINEEGVT-FPVLGVCLGFELI 130
++ + E P+ G C G ++
Sbjct: 59 YQFMEPLREFAAQGKPMFGTCAGLIIL 85
>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel,
alpha/beta three layer sandwich, lyase transferase; HET:
5RP; 2.90A {Thermotoga maritima}
Length = 208
Score = 36.7 bits (85), Expect = 0.005
Identities = 17/94 (18%), Positives = 36/94 (38%), Gaps = 18/94 (19%)
Query: 47 ASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQI-- 104
+V+ + G + + + E L ++G+++PGG + R +
Sbjct: 33 REHVEALHKLGVETLIV-----KL--PEQLDMVDGLILPGGEST--------TMIRILKE 77
Query: 105 LHLVDKINEEGVT-FPVLGVCLGFELILQVSNND 137
+ + +K+ E PV C G L+ + N
Sbjct: 78 MDMDEKLVERINNGLPVFATCAGVILLAKRIKNY 111
>2o2g_A Dienelactone hydrolase; YP_324580.1, structural genomics, JO center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: MSE; 1.92A {Anabaena variabilis}
Length = 223
Score = 34.9 bits (80), Expect = 0.022
Identities = 14/83 (16%), Positives = 27/83 (32%), Gaps = 6/83 (7%)
Query: 30 HIPSYVKAYPNYTSY--IAASYVKNIEAAGARVVPILIGQDREYYAEILTQING----VV 83
P V+A + +A S + +++A +V + L Q+ V+
Sbjct: 134 ERPETVQAVVSRGGRPDLAPSALPHVKAPTLLIVGGYDLPVIAMNEDALEQLQTSKRLVI 193
Query: 84 IPGGGTGFDHPNGYADAGRQILH 106
IP F+ P +
Sbjct: 194 IPRASHLFEEPGALTAVAQLASE 216
>1ka9_H Imidazole glycerol phosphtate synthase; riken structural
genomics/proteomics initiative, RSGI, structural
genomics, transferase; 2.30A {Thermus thermophilus}
SCOP: c.23.16.1
Length = 200
Score = 34.4 bits (80), Expect = 0.022
Identities = 10/40 (25%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 255 YGLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEK 294
YG +++ +Y+ F + + + ++ QFHPEK
Sbjct: 145 YGPLTPYSLGK-GEYEGTPFTALLAKE--NLLAPQFHPEK 181
Score = 29.8 bits (68), Expect = 0.81
Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 21/93 (22%)
Query: 47 ASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQI-- 104
S K +EAAG V + QD + + + +V+PG G + R
Sbjct: 16 RSAAKALEAAGFSVA---VAQD----PKAHEEADLLVLPGQGH-------FGQVMRAFQE 61
Query: 105 LHLVDKINE---EGVTFPVLGVCLGFELILQVS 134
V+++ G+ P LG+C+G +++ + S
Sbjct: 62 SGFVERVRRHLERGL--PFLGICVGMQVLYEGS 92
>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure,
ATP-binding, cytoplasm, ligase, nucleotide-binding,
purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga
maritima}
Length = 213
Score = 33.2 bits (77), Expect = 0.069
Identities = 26/129 (20%), Positives = 41/129 (31%), Gaps = 48/129 (37%)
Query: 53 IEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYAD-------AGRQ-I 104
+E G + + L +++PGG F Y D A R+ I
Sbjct: 23 LEINGFEPSYV-------GLDDKLDDYELIILPGG---F----SYGDYLRPGAVAAREKI 68
Query: 105 LHLVDKINEEGVTFPVLGVCLGF------------------------ELILQVSNNDTDF 140
+ K E G ++G+C GF + L V NNDT F
Sbjct: 69 AFEIAKAAERGK--LIMGICNGFQILIEMGLLKGALLQNSSGKFICKWVDLIVENNDTPF 126
Query: 141 RKSCKVQQV 149
+ + +
Sbjct: 127 TNAFEKGEK 135
>2abw_A PDX2 protein, glutaminase; PLP-synthase, vitamin B6, malaria,
transferase; HET: PG4; 1.62A {Plasmodium falciparum}
SCOP: c.23.16.1 PDB: 4ads_G
Length = 227
Score = 33.1 bits (75), Expect = 0.087
Identities = 15/93 (16%), Positives = 31/93 (33%), Gaps = 10/93 (10%)
Query: 47 ASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILH 106
++ + + I+ ++ L +G+VIPGG + +
Sbjct: 16 EPHINHFIKLQIPSLNIIQVRNVH----DLGLCDGLVIPGGESTTV----RRCCAYENDT 67
Query: 107 LVDKINEEGVT--FPVLGVCLGFELILQVSNND 137
L + + P+ G C G L+ + N
Sbjct: 68 LYNALVHFIHVLKKPIWGTCAGCILLSKNVENI 100
Score = 29.6 bits (66), Expect = 0.95
Identities = 20/142 (14%), Positives = 45/142 (31%), Gaps = 11/142 (7%)
Query: 160 KRSSLFSQINEEGVT--FPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLN----LKFL 213
+ +L++ + P+ G C G L+ + N + +
Sbjct: 64 ENDTLYNALVHFIHVLKKPIWGTCAGCILLSKNVENIKLYSNFGNKFSFGGLDITICRNF 123
Query: 214 PGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWE 273
G++ S + ++K I I+ L++ +L ++S+
Sbjct: 124 YGSQNDSFICSLNIISDSSAFKKD-LTAACIRAP----YIREILSDEVKVLATFSHESYG 178
Query: 274 FVSTVEHKEYPIVGIQFHPEKN 295
++ +G FHPE
Sbjct: 179 PNIIAAVEQNNCLGTVFHPELL 200
>2a9v_A GMP synthase; structural genomics, joint center for structural
genomics, J protein structure initiative, PSI-2, ligase;
2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1
Length = 212
Score = 31.7 bits (73), Expect = 0.21
Identities = 9/16 (56%), Positives = 9/16 (56%)
Query: 278 VEHKEYPIVGIQFHPE 293
HK PI QFHPE
Sbjct: 166 FYHKTRPIYATQFHPE 181
>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel,
chorismate, type 1 glutamine amidotransfera phenazine
biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP}
PDB: 3r74_A* 3r76_A*
Length = 645
Score = 32.1 bits (73), Expect = 0.27
Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 7/50 (14%)
Query: 82 VVIPGGGTGFDHPNGYADAGRQILH-LVDKINEEGVTFPVLGVCLGFELI 130
V+ PG G P+ D L+ + + +EG P + VCL +++
Sbjct: 491 VMGPGPGD----PSDAGDPRIARLYAWLRHLIDEGK--PFMAVCLSHQIL 534
Score = 29.0 bits (65), Expect = 2.3
Identities = 4/12 (33%), Positives = 8/12 (66%)
Query: 176 PVLGVCLGFELI 187
P + VCL +++
Sbjct: 523 PFMAVCLSHQIL 534
Score = 28.7 bits (64), Expect = 2.6
Identities = 5/19 (26%), Positives = 7/19 (36%), Gaps = 2/19 (10%)
Query: 275 VSTVEHKEYPIVGIQFHPE 293
V + +QFH E
Sbjct: 599 VHALRGP--TFSSMQFHAE 615
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine
nucleotide biosy process, ligase; HET: XMP; 2.72A
{Plasmodium falciparum}
Length = 556
Score = 31.8 bits (73), Expect = 0.29
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 278 VEHKEYPIVGIQFHPE 293
+ +KEY I G+Q+HPE
Sbjct: 196 IYNKEYNIYGVQYHPE 211
>3l7n_A Putative uncharacterized protein; glutamine amidotransferase,
transferas; 2.70A {Streptococcus mutans}
Length = 236
Score = 29.8 bits (67), Expect = 0.90
Identities = 21/128 (16%), Positives = 42/128 (32%), Gaps = 10/128 (7%)
Query: 53 IEAAGARVVPILIGQDREYYAEILTQINGVVIPGG--GTGFDHPNGYADAGRQILHLVDK 110
G V + + E + + + +++ GG + + L+ K
Sbjct: 21 AALRGHDVSMTKVYRY-EKLPKDIDDFDMLILMGGPQSPSSTKKEFPYYDAQAEVKLIQK 79
Query: 111 INEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINE 170
+ ++GVCLG +L+ D S K + N + K S S ++
Sbjct: 80 AAKSEK--IIVGVCLGAQLMGVAYGADYL--HSPKKEIGNYLISLTEAGKMDSYLSDFSD 135
Query: 171 EGVTFPVL 178
+ V
Sbjct: 136 D---LLVG 140
Score = 27.1 bits (60), Expect = 6.3
Identities = 3/9 (33%), Positives = 3/9 (33%)
Query: 285 IVGIQFHPE 293
Q H E
Sbjct: 173 QYAFQCHLE 181
>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP
synthetase, GMP biosynthesis, glutamine
amidotransferase, ligase, cytoplasm; 2.40A {Homo
sapiens}
Length = 218
Score = 29.4 bits (67), Expect = 0.96
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 278 VEHKEYPIVGIQFHPE 293
+ ++ + G QFHPE
Sbjct: 176 IANESKKLYGAQFHPE 191
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene,
phosphoprotein, GMP synthetase, guanine monophosphate
synthetase, chromosomal rearrangement; HET: XMP; 2.5A
{Homo sapiens}
Length = 697
Score = 30.3 bits (69), Expect = 0.99
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 275 VSTVEHKEYPIVGIQFHPE 293
V+ + ++ + G QFHPE
Sbjct: 178 VAGIANESKKLYGAQFHPE 196
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella
burnetii}
Length = 527
Score = 30.1 bits (69), Expect = 1.0
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 278 VEHKEYPIVGIQFHPE 293
+ + G+QFHPE
Sbjct: 171 MADFKRRFFGLQFHPE 186
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase,
N-type ATP pyrophosphata transferase (glutamine
amidotransferase); HET: AMP CIT; 2.20A {Escherichia
coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Length = 525
Score = 30.1 bits (69), Expect = 1.1
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 278 VEHKEYPIVGIQFHPE 293
+ ++E G+QFHPE
Sbjct: 168 MANEEKRFYGVQFHPE 183
>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase,
thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP:
c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B*
1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B*
Length = 379
Score = 29.4 bits (67), Expect = 1.4
Identities = 5/20 (25%), Positives = 9/20 (45%), Gaps = 3/20 (15%)
Query: 277 TVE---HKEYPIVGIQFHPE 293
T++ + P Q +PE
Sbjct: 335 TLQGIHRTDKPAFSFQGNPE 354
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding,
ATP binding, purine nucleotide biosynthetic pathway,
structural genomics; 2.10A {Thermus thermophilus} PDB:
2ywc_A*
Length = 503
Score = 29.4 bits (67), Expect = 1.7
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 275 VSTVEHKEYPIVGIQFHPE 293
V+ + + G+QFHPE
Sbjct: 148 VAAIASPDGRAYGVQFHPE 166
>1sfs_A Hypothetical protein; structural genomics, unknown function,
possible bacterial lysozyme, PSI, protein structure
initiative; 1.07A {Geobacillus stearothermophilus} SCOP:
c.1.8.8
Length = 240
Score = 28.9 bits (64), Expect = 2.0
Identities = 11/67 (16%), Positives = 18/67 (26%), Gaps = 20/67 (29%)
Query: 34 YVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDH 93
Y+ PN + + + I G +V+PI +
Sbjct: 59 YLSEVPNVSEGLTRDEIVRIRNYGVKVLPIY--NA------------------FREAVGY 98
Query: 94 PNGYADA 100
NG A
Sbjct: 99 ANGQVAA 105
>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold,
structural genomics, joint center for structural
genomics, JCSG; 1.70A {Thermotoga maritima} SCOP:
c.23.16.1
Length = 239
Score = 27.9 bits (62), Expect = 3.7
Identities = 17/81 (20%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
Query: 53 IEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKIN 112
+ + E L + + VV+ GG G Y + L+++I
Sbjct: 33 FREKNWSFDYLDTPKG-EKLERPLEEYSLVVLLGGYMGAYEEEKYPFL-KYEFQLIEEIL 90
Query: 113 EEGVTFPVLGVCLGFELILQV 133
++ + P LG+CLG +++ +V
Sbjct: 91 KKEI--PFLGICLGSQMLAKV 109
Score = 27.5 bits (61), Expect = 5.5
Identities = 6/9 (66%), Positives = 7/9 (77%)
Query: 285 IVGIQFHPE 293
VG+QFH E
Sbjct: 179 AVGLQFHIE 187
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance,
glycosylation, enzyme, macrolide, carbohydrate; HET: ERY
UDP; 1.7A {Streptomyces antibioticus}
Length = 430
Score = 28.2 bits (63), Expect = 3.9
Identities = 15/75 (20%), Positives = 23/75 (30%), Gaps = 10/75 (13%)
Query: 42 TSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAG 101
T I + + A G R V Y L + G T D+ + +
Sbjct: 39 TYAIPPVFADKVAATGPRPVL---------YHSTLPGPDADPEAWGSTLLDNVEPFLNDA 89
Query: 102 RQIL-HLVDKINEEG 115
Q L L D ++
Sbjct: 90 IQALPQLADAYADDI 104
>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics
initiative, RSGI, structural genomics, ligase; HET: GLN;
2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10
PDB: 1vcn_A 1vcm_A
Length = 550
Score = 27.8 bits (63), Expect = 4.9
Identities = 9/27 (33%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 268 KYKSWEFVSTVEHKEYP-IVGIQFHPE 293
+ + V +E K++P +G+Q HPE
Sbjct: 498 RGRGAGLVEAIELKDHPFFLGLQSHPE 524
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming),
cytidine 5 triphosphate synthase, ammonia lyase; 2.30A
{Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB:
2ad5_A*
Length = 545
Score = 27.8 bits (63), Expect = 5.1
Identities = 9/20 (45%), Positives = 11/20 (55%), Gaps = 1/20 (5%)
Query: 275 VSTVEHKEYP-IVGIQFHPE 293
V +E +P V QFHPE
Sbjct: 498 VEIIEVPNHPWFVACQFHPE 517
>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics,
protein structure initiative; 2.06A {Bacillus subtilis}
Length = 206
Score = 27.4 bits (61), Expect = 5.4
Identities = 9/54 (16%), Positives = 23/54 (42%), Gaps = 9/54 (16%)
Query: 73 AEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLG 126
N +V+ GG + +++ +++LH V ++ + P+ +C
Sbjct: 58 GLEPANFNLLVMIGG-------DSWSNDNKKLLHFVKTAFQKNI--PIAAICGA 102
>3efe_A THIJ/PFPI family protein; structural GEN csgid, center for
structural genomics of infectious disease chaperone;
2.30A {Bacillus anthracis}
Length = 212
Score = 27.3 bits (61), Expect = 5.8
Identities = 10/51 (19%), Positives = 21/51 (41%), Gaps = 8/51 (15%)
Query: 76 LTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLG 126
L + +++PGG T + + + IL + + + G V +C
Sbjct: 72 LESKDLLILPGGTTWSEEIH------QPILERIGQALKIGT--IVAAICGA 114
>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2;
HET: MSE; 1.30A {Methylobacillus flagellatus} PDB:
3l83_A*
Length = 250
Score = 27.1 bits (60), Expect = 6.8
Identities = 4/9 (44%), Positives = 5/9 (55%)
Query: 285 IVGIQFHPE 293
+G Q H E
Sbjct: 170 HIGFQCHIE 178
>3l9q_A DNA primase large subunit; POL alpha, DNA replication, polymerase,
iron-sulfur DNA-binding, DNA-directed RNA polymerase,
iron, iron-sulfur binding; HET: DNA; 1.70A {Homo
sapiens} PDB: 3q36_A*
Length = 195
Score = 27.0 bits (59), Expect = 7.8
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 87 GGTGFDHPNGYADAGRQILHLVDKINEE 114
G +HPN + ++IL+ I +E
Sbjct: 168 CGFSLNHPNQFFCESQRILNGGKDIKKE 195
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A
{Sulfolobus solfataricus}
Length = 535
Score = 27.1 bits (61), Expect = 8.2
Identities = 7/20 (35%), Positives = 8/20 (40%), Gaps = 1/20 (5%)
Query: 275 VSTVEHKEYP-IVGIQFHPE 293
V +E V Q HPE
Sbjct: 494 VEIIELPSNKFFVATQAHPE 513
>1oqw_A Fimbrial protein; type IV pilin, fiber-forming protein, adhesion,
pseudomonas aerugionosa, PAK pilin, cell adhesion;
2.00A {Pseudomonas aeruginosa} SCOP: d.24.1.1
Length = 144
Score = 26.1 bits (57), Expect = 9.8
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 9/41 (21%)
Query: 20 VIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARV 60
+IGILA A P Y +Y+A S + A+ +
Sbjct: 12 IIGILA---------AIAIPQYQNYVARSEGASALASVNPL 43
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.410
Gapped
Lambda K H
0.267 0.0784 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,665,570
Number of extensions: 276917
Number of successful extensions: 710
Number of sequences better than 10.0: 1
Number of HSP's gapped: 693
Number of HSP's successfully gapped: 60
Length of query: 308
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 215
Effective length of database: 4,105,140
Effective search space: 882605100
Effective search space used: 882605100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.6 bits)