RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12875
(308 letters)
>d1l9xa_ c.23.16.1 (A:) gamma-glutamyl hydrolase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 288
Score = 98.8 bits (245), Expect = 9e-25
Identities = 79/292 (27%), Positives = 116/292 (39%), Gaps = 66/292 (22%)
Query: 19 PVIGILAQEYTHIPSYVKAYPNYT-SYIAASYVKNIEAAGARVVPILIGQDREYYAEILT 77
P+IGIL Q K NY YIAASYVK +E+AGARVVP+ + +
Sbjct: 4 PIIGILMQ-----KCRNKVMKNYGRYYIAASYVKYLESAGARVVPVRLDLTEKD------ 52
Query: 78 QINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQVSNND 137
L IN G+ FP V L +V+
Sbjct: 53 --------------------------YEILFKSIN--GILFPGGSVDLRRSDYAKVAKIF 84
Query: 138 TDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDF 197
+ Q ++G FPV G CLGFE + + + +
Sbjct: 85 YNLSI------------------------QSFDDGDYFPVWGTCLGFEELSLLISGECLL 120
Query: 198 RKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKY-G 256
V + L F G S +F P++ + +PLT N H W ++ ++
Sbjct: 121 TA-TDTVDVAMPLNFTGGQLHSRMFQNFPTELLLSLAVEPLTANFHKWSLSVKNFTMNEK 179
Query: 257 LTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNAYEWTESQHNPHS 308
L + +N+LT + EF+ST+E +YP+ G+Q+HPEK YEW H+
Sbjct: 180 LKKFFNVLTTNTDGKIEFISTMEGYKYPVYGVQWHPEKAPYEWKNLDGISHA 231
>d1jvna2 c.23.16.1 (A:-3-229) GAT subunit, HisH, (or domain) of
imidazoleglycerolphosphate synthase HisF {Baker's yeast
(Saccharomyces cerevisiae), His7 [TaxId: 4932]}
Length = 232
Score = 42.6 bits (99), Expect = 2e-05
Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 240 HNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEK 294
+ H + K L + +KY S EF++ V I QFHPEK
Sbjct: 147 YFVHSFAAILNSEKKKNLENDGWKIAKAKYGSEEFIAAVNKN--NIFATQFHPEK 199
>d1a9xb2 c.23.16.1 (B:1653-1880) Carbamoyl phosphate synthetase,
small subunit C-terminal domain {Escherichia coli
[TaxId: 562]}
Length = 228
Score = 39.8 bits (92), Expect = 2e-04
Identities = 17/118 (14%), Positives = 34/118 (28%), Gaps = 26/118 (22%)
Query: 176 PVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQ 235
PV G+CLG +L+ S K+ K++ + ++ + +
Sbjct: 112 PVFGICLGHQLLALASGA-----KTVKMKFGHHGGNHPVKDVEKNVVMITAQNHGFAVDE 166
Query: 236 KPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPE 293
L N + + D + + + P Q +PE
Sbjct: 167 ATLPANLRVTHKSLFDGT---------------------LQGIHRTDKPAFSFQGNPE 203
>d1k9vf_ c.23.16.1 (F:) GAT subunit, HisH, (or domain) of
imidazoleglycerolphosphate synthase HisF {Thermotoga
maritima [TaxId: 2336]}
Length = 200
Score = 38.8 bits (89), Expect = 3e-04
Identities = 19/92 (20%), Positives = 32/92 (34%), Gaps = 16/92 (17%)
Query: 222 FSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHK 281
++P + K N + + + E ++L ++Y F S V
Sbjct: 115 SRRLPHMGWNEVIFKDTFPNGYYYF----VHTYRAVCEEEHVLGTTEYDGEIFPSAVRKG 170
Query: 282 EYPIVGIQFHPEK----------NAYEWTESQ 303
I+G QFHPEK E + S+
Sbjct: 171 --RILGFQFHPEKSSKIGRKLLEKVIECSLSR 200
>d1qdlb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG
{Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Length = 195
Score = 38.3 bits (88), Expect = 5e-04
Identities = 26/118 (22%), Positives = 45/118 (38%), Gaps = 19/118 (16%)
Query: 176 PVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQ 235
P+LGVCLG + I + +++ + SL+ + ++ Y
Sbjct: 79 PILGVCLGHQAIGYAFGAKIRRARKVFHGKISNIILVNN--SPLSLYYGIAKEFKATRY- 135
Query: 236 KPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPE 293
H+ + + R ++ E I + H+EYPI G+QFHPE
Sbjct: 136 ----HSLVVDEVHRPLIVDAISAEDNEI------------MAIHHEEYPIYGVQFHPE 177
>d1ka9h_ c.23.16.1 (H:) GAT subunit, HisH, (or domain) of
imidazoleglycerolphosphate synthase HisF {Thermus
thermophilus [TaxId: 274]}
Length = 195
Score = 35.8 bits (81), Expect = 0.003
Identities = 9/67 (13%), Positives = 19/67 (28%), Gaps = 3/67 (4%)
Query: 228 KYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEYPIVG 287
+ + YG +++ F + + + ++
Sbjct: 116 QMGWNALEFGGAFAPLTGRHFYFANSYYGPLTPYSLGKGEYE-GTPFTALLAKE--NLLA 172
Query: 288 IQFHPEK 294
QFHPEK
Sbjct: 173 PQFHPEK 179
>d1i7qb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG
{Serratia marcescens [TaxId: 615]}
Length = 192
Score = 35.2 bits (80), Expect = 0.005
Identities = 9/74 (12%), Positives = 18/74 (24%), Gaps = 5/74 (6%)
Query: 225 VPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVST-----VE 279
+ I + H+ + + + + + V
Sbjct: 98 GQAGEILHGKASAIAHDGEGMFAGMANPLPVARYHSLVGSNIPADLTVNARFGEMVMAVR 157
Query: 280 HKEYPIVGIQFHPE 293
+ G QFHPE
Sbjct: 158 DDRRRVCGFQFHPE 171
>d2abwa1 c.23.16.1 (A:2-219) Pyridoxine biosynthesis protein 2, Pdx2
{Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}
Length = 218
Score = 35.3 bits (80), Expect = 0.005
Identities = 20/142 (14%), Positives = 41/142 (28%), Gaps = 11/142 (7%)
Query: 159 AKRSSLFSQINEEGVTF--PVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNL----KF 212
+ +L++ + P+ G C G L+ + N + +
Sbjct: 62 YENDTLYNALVHFIHVLKKPIWGTCAGCILLSKNVENIKLYSNFGNKFSFGGLDITICRN 121
Query: 213 LPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSW 272
G++ S + ++K LT R+ + +
Sbjct: 122 FYGSQNDSFICSLNIISDSSAFKKDLTAACIRAPYIREILSDE---VKVLATFSHESYGP 178
Query: 273 EFVSTVEHKEYPIVGIQFHPEK 294
++ VE +G FHPE
Sbjct: 179 NIIAAVEQN--NCLGTVFHPEL 198
>d2a9va1 c.23.16.1 (A:1-196) GMP synthase subunit A, GuaAA {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 196
Score = 34.9 bits (79), Expect = 0.007
Identities = 21/161 (13%), Positives = 41/161 (25%), Gaps = 21/161 (13%)
Query: 133 VSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSN 192
+ ND D + + + L+ + + + + + +
Sbjct: 30 IVPNDIDSSELDGLDGLVLSGGAPNIDEELDKLGSVGKYIDDHNYPILGICVGAQFIALH 89
Query: 193 NDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDM 252
K+ + + + ++F +PS+ NH I
Sbjct: 90 FGASVVKAKHPEFGKTKVSVMHS---ENIFGGLPSEIT--------VWENHNDEIINLPD 138
Query: 253 IKYGLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPE 293
+ V HK PI QFHPE
Sbjct: 139 DFTLAASSA----------TCQVQGFYHKTRPIYATQFHPE 169
>d1wl8a1 c.23.16.1 (A:1-188) GMP synthase subunit A, GuaAA {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 188
Score = 33.0 bits (74), Expect = 0.027
Identities = 10/17 (58%), Positives = 14/17 (82%)
Query: 278 VEHKEYPIVGIQFHPEK 294
++H+E PI G+QFHPE
Sbjct: 153 MKHEELPIYGVQFHPEV 169
>d1gpma2 c.23.16.1 (A:3-207) GMP synthetase {Escherichia coli
[TaxId: 562]}
Length = 205
Score = 32.6 bits (73), Expect = 0.038
Identities = 8/57 (14%), Positives = 16/57 (28%), Gaps = 1/57 (1%)
Query: 239 THNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTV-EHKEYPIVGIQFHPEK 294
+ M ++ + + ++E G+QFHPE
Sbjct: 126 ALTADGKPLLDVWMSHGDKVTAIPSDFITVASTESCPFAIMANEEKRFYGVQFHPEV 182
>d1s1ma1 c.23.16.1 (A:287-544) CTP synthase PyrG, C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 258
Score = 32.3 bits (73), Expect = 0.052
Identities = 29/145 (20%), Positives = 45/145 (31%), Gaps = 26/145 (17%)
Query: 175 FPVLGVCLGFE--LILQVSN-------NDTDFRKSCKVQQVNLNLKFLPG--------AK 217
P LG+CLG + LI + N T+F CK V L ++ K
Sbjct: 87 IPYLGICLGMQVALIDYARHVANMENANSTEFVPDCKYPVVALITEWRDENGNVEVRSEK 146
Query: 218 RSSLFSQVPSKYIKKFYQKPLT----HNNHIW--CITRQDMI--KYGLTETWNILTLSKY 269
+ + L + I R ++ E + +
Sbjct: 147 SDLGGTMRLGAQQCQLVDDSLVRQLYNAPTIVERHRHRYEVNNMLLKQIEDAGLRVAGRS 206
Query: 270 KSWEFVSTVEHKEYP-IVGIQFHPE 293
+ V +E +P V QFHPE
Sbjct: 207 GDDQLVEIIEVPNHPWFVACQFHPE 231
>d1q7ra_ c.23.16.1 (A:) Hypothetical protein YaaE {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 202
Score = 31.0 bits (69), Expect = 0.12
Identities = 8/67 (11%), Positives = 18/67 (26%), Gaps = 4/67 (5%)
Query: 228 KYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEYPIVG 287
+ + F + + + + + L+ Y + +G
Sbjct: 116 RQRESFEAELSIKGVGDGFVGVFIRAPHIVEAGDGVDVLATYNDR--IVAARQG--QFLG 171
Query: 288 IQFHPEK 294
FHPE
Sbjct: 172 CSFHPEL 178
>d1vcoa1 c.23.16.1 (A:298-547) CTP synthase PyrG, C-terminal domain
{Thermus thermophilus [TaxId: 274]}
Length = 250
Score = 30.8 bits (69), Expect = 0.16
Identities = 22/140 (15%), Positives = 46/140 (32%), Gaps = 21/140 (15%)
Query: 175 FPVLGVCLGF---------ELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRS------ 219
P LG+CLG + N T+F ++L + L
Sbjct: 88 IPYLGICLGLQIAVIEFARNVAGLKGANSTEFDPHTPHPVIDLMPEQLEVEGLGGTMRLG 147
Query: 220 --SLFSQVPSKYIKKFYQKPLT-HNNHIWCITRQDMIKYGLTETWNILTLSKYKSW--EF 274
+ + + + + ++ + + H + + + T +
Sbjct: 148 DWPMRIKPGTLLHRLYGKEEVLERHRHRYEVNPLYVDGLERAGLVVSATTPGMRGRGAGL 207
Query: 275 VSTVEHKEYP-IVGIQFHPE 293
V +E K++P +G+Q HPE
Sbjct: 208 VEAIELKDHPFFLGLQSHPE 227
>d2nv0a1 c.23.16.1 (A:1-195) Hypothetical protein YaaE {Bacillus
subtilis [TaxId: 1423]}
Length = 195
Score = 28.7 bits (63), Expect = 0.75
Identities = 8/67 (11%), Positives = 18/67 (26%), Gaps = 7/67 (10%)
Query: 233 FYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSW-----EFVSTVEHKEYPIVG 287
F ++ + + + +IL + + + +G
Sbjct: 109 FGRQVDSFEADLTIKGLDEPFTGVFIRAPHILEAGENVEVLSEHNGRIVAAKQG--QFLG 166
Query: 288 IQFHPEK 294
FHPE
Sbjct: 167 CSFHPEL 173
>d1o1ya_ c.23.16.1 (A:) Hypothetical protein TM1158 {Thermotoga
maritima [TaxId: 2336]}
Length = 230
Score = 27.7 bits (60), Expect = 1.6
Identities = 7/33 (21%), Positives = 11/33 (33%)
Query: 261 WNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPE 293
++ + E VG+QFH E
Sbjct: 146 DLPRRATRVFTSEKYENQGFVYGKAVGLQFHIE 178
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus
niger), endo-polygalacturonase II [TaxId: 5061]}
Length = 335
Score = 25.8 bits (56), Expect = 6.8
Identities = 13/57 (22%), Positives = 20/57 (35%)
Query: 28 YTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVI 84
+ +K T ++ NI +G ++I QD E NGV I
Sbjct: 223 NSENAVRIKTISGATGSVSEITYSNIVMSGISDYGVVIQQDYEDGKPTGKPTNGVTI 279
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.136 0.410
Gapped
Lambda K H
0.267 0.0675 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,147,945
Number of extensions: 53831
Number of successful extensions: 121
Number of sequences better than 10.0: 1
Number of HSP's gapped: 116
Number of HSP's successfully gapped: 21
Length of query: 308
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 223
Effective length of database: 1,240,546
Effective search space: 276641758
Effective search space used: 276641758
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.3 bits)