BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12876
(115 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1L9X|A Chain A, Structure Of Gamma-Glutamyl Hydrolase
pdb|1L9X|B Chain B, Structure Of Gamma-Glutamyl Hydrolase
pdb|1L9X|C Chain C, Structure Of Gamma-Glutamyl Hydrolase
pdb|1L9X|D Chain D, Structure Of Gamma-Glutamyl Hydrolase
Length = 315
Score = 72.0 bits (175), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 66/109 (60%), Gaps = 1/109 (0%)
Query: 6 LTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNAYEWTESQHNPHSHDDIISAR 65
L + +N+LT + EF+ST+E +YP+ G+Q+HPEK YEW H+ + + +A
Sbjct: 207 LKKFFNVLTTNTDGKIEFISTMEGYKYPVYGVQWHPEKAPYEWKNLDGISHAPNAVKTAF 266
Query: 66 FFSDWFIDKARLNNNSFASRDDLYKSLIQNYPNVMSYPNKLGFEQIYLF 114
+ +++F+++AR NN+ F S + K+LI + + + N F+Q Y+F
Sbjct: 267 YLAEFFVNEARKNNHHFKSESEEEKALIYQFSPIYT-GNISSFQQCYIF 314
>pdb|1QDL|B Chain B, The Crystal Structure Of Anthranilate Synthase From
Sulfolobus Solfataricus
Length = 195
Score = 32.7 bits (73), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 24 VSTVEHKEYPIVGIQFHPE 42
+ + H+EYPI G+QFHPE
Sbjct: 159 IMAIHHEEYPIYGVQFHPE 177
>pdb|1WL8|A Chain A, Crystal Structure Of Ph1346 Protein From Pyrococcus
Horikoshii
Length = 189
Score = 29.6 bits (65), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 24 VSTVEHKEYPIVGIQFHPE 42
+ ++H+E PI G+QFHPE
Sbjct: 150 IEAMKHEELPIYGVQFHPE 168
>pdb|2D7J|A Chain A, Crystal Structure Analysis Of Glutamine Amidotransferase
From Pyrococcus Horikoshii Ot3
Length = 209
Score = 29.6 bits (65), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 24 VSTVEHKEYPIVGIQFHPE 42
+ ++H+E PI G+QFHPE
Sbjct: 170 IEAMKHEELPIYGVQFHPE 188
>pdb|1KXJ|A Chain A, The Crystal Structure Of Glutamine Amidotransferase From
Thermotoga Maritima
pdb|1KXJ|B Chain B, The Crystal Structure Of Glutamine Amidotransferase From
Thermotoga Maritima
Length = 205
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 6 LTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNA 45
+ E ++L ++Y F S V ++ I+G QFHPEK++
Sbjct: 148 VCEEEHVLGTTEYDGEIFPSAV--RKGRILGFQFHPEKSS 185
>pdb|3U1H|A Chain A, Crystal Structure Of Ipmdh From The Last Common Ancestor
Of Bacillus
pdb|3U1H|B Chain B, Crystal Structure Of Ipmdh From The Last Common Ancestor
Of Bacillus
Length = 390
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Query: 11 NILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNAYEWTESQHNPHSHDDIISARFFSDW 70
N+L S+ W V+ KEYP V ++ NA + NP D I++ F D
Sbjct: 213 NVLESSRL--WREVAEEVAKEYPDVELEHMLVDNAA--MQLIRNPRQFDVIVTENMFGDI 268
Query: 71 FIDKARLNNNSFA 83
D+A + S
Sbjct: 269 LSDEASMITGSLG 281
>pdb|1GPW|B Chain B, Structural Evidence For Ammonia Tunneling Across The
(BetaALPHA)8 BARREL OF THE IMIDAZOLE GLYCEROL PHOSPHATE
Synthase Bienzyme Complex.
pdb|1GPW|D Chain D, Structural Evidence For Ammonia Tunneling Across The
(BetaALPHA)8 BARREL OF THE IMIDAZOLE GLYCEROL PHOSPHATE
Synthase Bienzyme Complex.
pdb|1GPW|F Chain F, Structural Evidence For Ammonia Tunneling Across The
(BetaALPHA)8 BARREL OF THE IMIDAZOLE GLYCEROL PHOSPHATE
Synthase Bienzyme Complex.
pdb|1K9V|F Chain F, Structural Evidence For Ammonia Tunelling Across The
(Beta- Alpha)8-Barrel Of The Imidazole Glycerol
Phosphate Synthase Bienzyme Complex
pdb|3ZR4|B Chain B, Structural Evidence For Ammonia Tunneling Across The
(Beta- Alpha)8 Barrel Of The Imidazole Glycerol
Phosphate Synthase Bienzyme Complex
pdb|3ZR4|D Chain D, Structural Evidence For Ammonia Tunneling Across The
(Beta- Alpha)8 Barrel Of The Imidazole Glycerol
Phosphate Synthase Bienzyme Complex
pdb|3ZR4|F Chain F, Structural Evidence For Ammonia Tunneling Across The
(Beta- Alpha)8 Barrel Of The Imidazole Glycerol
Phosphate Synthase Bienzyme Complex
Length = 201
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 6 LTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNA 45
+ E ++L ++Y F S V ++ I+G QFHPEK++
Sbjct: 146 VCEEEHVLGTTEYDGEIFPSAV--RKGRILGFQFHPEKSS 183
>pdb|3UOW|A Chain A, Crystal Structure Of Pf10_0123, A Gmp Synthetase From
Plasmodium Falciparum
pdb|3UOW|B Chain B, Crystal Structure Of Pf10_0123, A Gmp Synthetase From
Plasmodium Falciparum
Length = 556
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 23 FVSTVEHKEYPIVGIQFHPE 42
+ ++ +KEY I G+Q+HPE
Sbjct: 192 LICSIYNKEYNIYGVQYHPE 211
>pdb|4GZ9|A Chain A, Mouse Neuropilin-1, Extracellular Domains 1-4 (A1a2b1b2)
pdb|4GZA|H Chain H, Complex Of Mouse Plexin A2 - Semaphorin 3a - Neuropilin-1
Length = 577
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 56 HSHDDIISARFFSDWFIDKARLN--NNSFASRDDLYKSLIQNYPNVMSYPNKLG 107
HS S+++ ++W ++++RLN N + +D YK IQ ++ + +G
Sbjct: 269 HSDQITASSQYGTNWSVERSRLNYPENGWTPGEDSYKEWIQVDLGLLRFVTAVG 322
>pdb|2ORX|A Chain A, Structural Basis For Ligand Binding And Heparin Mediated
Activation Of Neuropilin
pdb|2ORZ|A Chain A, Structural Basis For Ligand Binding And Heparin Mediated
Activation Of Neuropilin
Length = 314
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/56 (23%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 56 HSHDDIISARFFSDWFIDKARLN--NNSFASRDDLYKSLIQNYPNVMSYPNKLGFE 109
HS S+++ ++W ++++RLN N + +D Y+ IQ ++ + +G +
Sbjct: 15 HSDQITASSQYGTNWSVERSRLNYPENGWTPGEDSYREWIQVDLGLLRFVTAVGTQ 70
>pdb|2AL2|A Chain A, Crystal Structure Analysis Of Enolase Mg Subunit Complex
At Ph 8.0
Length = 436
Score = 26.2 bits (56), Expect = 4.4, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 7/47 (14%)
Query: 60 DIISARFFSDWFIDKARLNNNSFASR-------DDLYKSLIQNYPNV 99
D S+ FF D D N NS S+ DLY SL++ YP V
Sbjct: 246 DCASSEFFKDGKYDLDFKNPNSDKSKWLTGPQLADLYHSLMKRYPIV 292
>pdb|2XH0|A Chain A, Engineering The Enolase Active Site Pocket: Crystal
Structure Of The S39n Q167k D321r Mutant Of Yeast
Enolase 1
pdb|2XH0|B Chain B, Engineering The Enolase Active Site Pocket: Crystal
Structure Of The S39n Q167k D321r Mutant Of Yeast
Enolase 1
pdb|2XH0|C Chain C, Engineering The Enolase Active Site Pocket: Crystal
Structure Of The S39n Q167k D321r Mutant Of Yeast
Enolase 1
pdb|2XH0|D Chain D, Engineering The Enolase Active Site Pocket: Crystal
Structure Of The S39n Q167k D321r Mutant Of Yeast
Enolase 1
Length = 443
Score = 26.2 bits (56), Expect = 4.4, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 7/47 (14%)
Query: 60 DIISARFFSDWFIDKARLNNNSFASR-------DDLYKSLIQNYPNV 99
D S+ FF D D N NS S+ DLY SL++ YP V
Sbjct: 246 DCASSEFFKDGKYDLDFKNPNSDKSKWLTGPQLADLYHSLMKRYPIV 292
>pdb|1L8P|A Chain A, Mg-phosphonoacetohydroxamate Complex Of S39a Yeast Enolase
1
pdb|1L8P|B Chain B, Mg-phosphonoacetohydroxamate Complex Of S39a Yeast Enolase
1
pdb|1L8P|C Chain C, Mg-phosphonoacetohydroxamate Complex Of S39a Yeast Enolase
1
pdb|1L8P|D Chain D, Mg-phosphonoacetohydroxamate Complex Of S39a Yeast Enolase
1
Length = 436
Score = 26.2 bits (56), Expect = 4.4, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 7/47 (14%)
Query: 60 DIISARFFSDWFIDKARLNNNSFASR-------DDLYKSLIQNYPNV 99
D S+ FF D D N NS S+ DLY SL++ YP V
Sbjct: 246 DCASSEFFKDGKYDLDFKNPNSDKSKWLTGPQLADLYHSLMKRYPIV 292
>pdb|2AL2|B Chain B, Crystal Structure Analysis Of Enolase Mg Subunit Complex
At Ph 8.0
Length = 436
Score = 26.2 bits (56), Expect = 4.4, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 7/47 (14%)
Query: 60 DIISARFFSDWFIDKARLNNNSFASR-------DDLYKSLIQNYPNV 99
D S+ FF D D N NS S+ DLY SL++ YP V
Sbjct: 246 DCASSEFFKDGKYDLDFKNPNSDKSKWLTGPQLADLYHSLMKRYPIV 292
>pdb|2XH7|A Chain A, Engineering The Enolase Active Site Pocket: Crystal
Structure Of The D321a Mutant Of Yeast Enolase 1
pdb|2XH7|B Chain B, Engineering The Enolase Active Site Pocket: Crystal
Structure Of The D321a Mutant Of Yeast Enolase 1
Length = 443
Score = 26.2 bits (56), Expect = 4.4, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 7/47 (14%)
Query: 60 DIISARFFSDWFIDKARLNNNSFASR-------DDLYKSLIQNYPNV 99
D S+ FF D D N NS S+ DLY SL++ YP V
Sbjct: 246 DCASSEFFKDGKYDLDFKNPNSDKSKWLTGPQLADLYHSLMKRYPIV 292
>pdb|2XH4|A Chain A, Engineering The Enolase Active Site Pocket: Crystal
Structure Of The S39a D321a Mutant Of Yeast Enolase 1
pdb|2XH4|B Chain B, Engineering The Enolase Active Site Pocket: Crystal
Structure Of The S39a D321a Mutant Of Yeast Enolase 1
pdb|2XH4|C Chain C, Engineering The Enolase Active Site Pocket: Crystal
Structure Of The S39a D321a Mutant Of Yeast Enolase 1
pdb|2XH4|D Chain D, Engineering The Enolase Active Site Pocket: Crystal
Structure Of The S39a D321a Mutant Of Yeast Enolase 1
Length = 443
Score = 26.2 bits (56), Expect = 4.4, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 7/47 (14%)
Query: 60 DIISARFFSDWFIDKARLNNNSFASR-------DDLYKSLIQNYPNV 99
D S+ FF D D N NS S+ DLY SL++ YP V
Sbjct: 246 DCASSEFFKDGKYDLDFKNPNSDKSKWLTGPQLADLYHSLMKRYPIV 292
>pdb|2XH2|A Chain A, Engineering The Enolase Active Site Pocket: Crystal
Structure Of The S39n D321a Mutant Of Yeast Enolase 1
pdb|2XH2|B Chain B, Engineering The Enolase Active Site Pocket: Crystal
Structure Of The S39n D321a Mutant Of Yeast Enolase 1
pdb|2XH2|C Chain C, Engineering The Enolase Active Site Pocket: Crystal
Structure Of The S39n D321a Mutant Of Yeast Enolase 1
pdb|2XH2|D Chain D, Engineering The Enolase Active Site Pocket: Crystal
Structure Of The S39n D321a Mutant Of Yeast Enolase 1
Length = 443
Score = 26.2 bits (56), Expect = 4.4, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 7/47 (14%)
Query: 60 DIISARFFSDWFIDKARLNNNSFASR-------DDLYKSLIQNYPNV 99
D S+ FF D D N NS S+ DLY SL++ YP V
Sbjct: 246 DCASSEFFKDGKYDLDFKNPNSDKSKWLTGPQLADLYHSLMKRYPIV 292
>pdb|2XGZ|A Chain A, Engineering The Enolase Active Site Pocket: Crystal
Structure Of The S39n D321r Mutant Of Yeast Enolase 1
pdb|2XGZ|B Chain B, Engineering The Enolase Active Site Pocket: Crystal
Structure Of The S39n D321r Mutant Of Yeast Enolase 1
Length = 443
Score = 26.2 bits (56), Expect = 4.4, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 7/47 (14%)
Query: 60 DIISARFFSDWFIDKARLNNNSFASR-------DDLYKSLIQNYPNV 99
D S+ FF D D N NS S+ DLY SL++ YP V
Sbjct: 246 DCASSEFFKDGKYDLDFKNPNSDKSKWLTGPQLADLYHSLMKRYPIV 292
>pdb|1EBG|A Chain A, Chelation Of Ser 39 To Mg2+ Latches A Gate At The Active
Site Of Enolase: Structure Of The Bis(Mg2+) Complex Of
Yeast Enolase And The Intermediate Analog
Phosphonoacetohydroxamate At 2.1 Angstroms Resolution
pdb|1EBG|B Chain B, Chelation Of Ser 39 To Mg2+ Latches A Gate At The Active
Site Of Enolase: Structure Of The Bis(Mg2+) Complex Of
Yeast Enolase And The Intermediate Analog
Phosphonoacetohydroxamate At 2.1 Angstroms Resolution
pdb|1EBH|A Chain A, Octahedral Coordination At The High Affinity Metal Site In
Enolase; Crystallographic Analysis Of The Mg++-Enzyme
From Yeast At 1.9 Angstroms Resolution
pdb|1EBH|B Chain B, Octahedral Coordination At The High Affinity Metal Site In
Enolase; Crystallographic Analysis Of The Mg++-Enzyme
From Yeast At 1.9 Angstroms Resolution
pdb|1ONE|A Chain A, Yeast Enolase Complexed With An Equilibrium Mixture Of 2'-
Phosphoglyceate And Phosphoenolpyruvate
pdb|1ONE|B Chain B, Yeast Enolase Complexed With An Equilibrium Mixture Of 2'-
Phosphoglyceate And Phosphoenolpyruvate
pdb|2ONE|A Chain A, Asymmetric Yeast Enolase Dimer Complexed With Resolved 2'-
Phosphoglycerate And Phosphoenolpyruvate
pdb|2ONE|B Chain B, Asymmetric Yeast Enolase Dimer Complexed With Resolved 2'-
Phosphoglycerate And Phosphoenolpyruvate
pdb|2AL1|A Chain A, Crystal Structure Analysis Of Enolase Mg Subunit Complex
At Ph 8.0
pdb|2AL1|B Chain B, Crystal Structure Analysis Of Enolase Mg Subunit Complex
At Ph 8.0
Length = 436
Score = 26.2 bits (56), Expect = 4.7, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 7/47 (14%)
Query: 60 DIISARFFSDWFIDKARLNNNSFASR-------DDLYKSLIQNYPNV 99
D S+ FF D D N NS S+ DLY SL++ YP V
Sbjct: 246 DCASSEFFKDGKYDLDFKNPNSDKSKWLTGPQLADLYHSLMKRYPIV 292
>pdb|1ELS|A Chain A, Catalytic Metal Ion Binding In Enolase: The Crystal
Structure Of Enolase-Mn2+-Phosphonoacetohydroxamate
Complex At 2.4 Angstroms Resolution
pdb|1NEL|A Chain A, Fluoride Inhibition Of Yeast Enolase: Crystal Structure Of
The Enolase-mg2+-f--pi Complex At 2.6-angstroms
Resolution
pdb|3ENL|A Chain A, Refined Structure Of Yeast Apo-Enolase At 2.25 Angstroms
Resolution
pdb|4ENL|A Chain A, Crystal Structure Of Holoenzyme Refined At 1.9 Angstroms
Resolution: Trigonal-Bipyramidal Geometry Of The Cation
Binding Site
pdb|5ENL|A Chain A, Inhibition Of Enolase: The Crystal Structures Of Enolase-
Ca2+-Phosphoglycerate And Enolase-Zn2+-Phosphoglycolate
Complexes At 2.2-Angstroms Resolution
pdb|6ENL|A Chain A, Inhibition Of Enolase: The Crystal Structures Of Enolase-
Ca2+-Phosphoglycerate And Enolase-Zn2+-Phosphoglycolate
Complexes At 2.2-Angstroms Resolution
pdb|7ENL|A Chain A, Mechanism Of Enolase: The Crystal Structure Of
Enolase-Mg2+- Phosphoglycerate(Slash)
Phosphoenolpyruvate Complex At 2.2-Angstroms Resolution
Length = 436
Score = 26.2 bits (56), Expect = 4.7, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 7/47 (14%)
Query: 60 DIISARFFSDWFIDKARLNNNSFASR-------DDLYKSLIQNYPNV 99
D S+ FF D D N NS S+ DLY SL++ YP V
Sbjct: 246 DCASSEFFKDGKYDLDFKNPNSDKSKWLTGPQLADLYHSLMKRYPIV 292
>pdb|1P48|A Chain A, Reverse Protonation Is The Key To General Acid-Base
Catalysis In Enolase
pdb|1P48|B Chain B, Reverse Protonation Is The Key To General Acid-Base
Catalysis In Enolase
Length = 436
Score = 26.2 bits (56), Expect = 4.7, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 7/47 (14%)
Query: 60 DIISARFFSDWFIDKARLNNNSFASR-------DDLYKSLIQNYPNV 99
D S+ FF D D N NS S+ DLY SL++ YP V
Sbjct: 246 DCASSEFFKDGKYDLDFKNPNSDKSKWLTGPQLADLYHSLMKRYPIV 292
>pdb|1P43|A Chain A, Reverse Protonation Is The Key To General Acid-Base
Catalysis In Enolase
pdb|1P43|B Chain B, Reverse Protonation Is The Key To General Acid-Base
Catalysis In Enolase
Length = 436
Score = 26.2 bits (56), Expect = 4.7, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 7/47 (14%)
Query: 60 DIISARFFSDWFIDKARLNNNSFASR-------DDLYKSLIQNYPNV 99
D S+ FF D D N NS S+ DLY SL++ YP V
Sbjct: 246 DCASSEFFKDGKYDLDFKNPNSDKSKWLTGPQLADLYHSLMKRYPIV 292
>pdb|3I97|A Chain A, B1 Domain Of Human Neuropilin-1 Bound With Small Molecule
Eg
pdb|3I97|B Chain B, B1 Domain Of Human Neuropilin-1 Bound With Small Molecule
Eg
Length = 158
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/56 (23%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 56 HSHDDIISARFFSDWFIDKARLN--NNSFASRDDLYKSLIQNYPNVMSYPNKLGFE 109
HS S+++ ++W +++RLN N + +D Y+ IQ ++ + +G +
Sbjct: 18 HSDQITASSQYSTNWSAERSRLNYPENGWTPGEDSYREWIQVDLGLLRFVTAVGTQ 73
>pdb|1KEX|A Chain A, Crystal Structure Of The B1 Domain Of Human Neuropilin-1
Length = 155
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/56 (23%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 56 HSHDDIISARFFSDWFIDKARLN--NNSFASRDDLYKSLIQNYPNVMSYPNKLGFE 109
HS S+++ ++W +++RLN N + +D Y+ IQ ++ + +G +
Sbjct: 15 HSDQITASSQYSTNWSAERSRLNYPENGWTPGEDSYREWIQVDLGLLRFVTAVGTQ 70
>pdb|2QQN|A Chain A, Neuropilin-1 B1 Domain In Complex With A Vegf-Blocking Fab
Length = 159
Score = 26.2 bits (56), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/56 (23%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 56 HSHDDIISARFFSDWFIDKARLN--NNSFASRDDLYKSLIQNYPNVMSYPNKLGFE 109
HS S+++ ++W +++RLN N + +D Y+ IQ ++ + +G +
Sbjct: 19 HSDQITASSQYSTNWSAERSRLNYPENGWTPGEDSYREWIQVDLGLLRFVTAVGTQ 74
>pdb|1X8B|A Chain A, Structure Of Human Wee1a Kinase: Kinase Domain Complexed
With Inhibitor Pd0407824
Length = 289
Score = 25.8 bits (55), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 56 HSHDDIISARFFSDWFIDKARLNNNSFASRDDLYKSLIQNYPNVMSY 102
HSH R+FS W D L N + + L ++ +NY +MSY
Sbjct: 70 HSH----VVRYFSAWAEDDHMLIQNEYCNGGSLADAISENY-RIMSY 111
>pdb|3BI6|A Chain A, Wee1 Kinase Complex With Inhibitor Pd352396
pdb|3BIZ|A Chain A, Wee1 Kinase Complex With Inhibitor Pd331618
pdb|3CQE|A Chain A, Wee1 Kinase Complex With Inhibitor Pd074291
pdb|3CR0|A Chain A, Wee1 Kinase Complex With Inhibitor Pd259_809
Length = 287
Score = 25.8 bits (55), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 56 HSHDDIISARFFSDWFIDKARLNNNSFASRDDLYKSLIQNYPNVMSY 102
HSH R+FS W D L N + + L ++ +NY +MSY
Sbjct: 68 HSH----VVRYFSAWAEDDHMLIQNEYCNGGSLADAISENY-RIMSY 109
>pdb|2Z4T|A Chain A, Crystal Structure Of Vibrionaceae Photobacterium Sp.
Jt-Ish-224 2,6- Sialyltransferase In A Ternary Complex
With Donor Product Cmp And Accepter Substrate Lactose
Length = 514
Score = 25.8 bits (55), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 8/22 (36%), Positives = 17/22 (77%)
Query: 92 LIQNYPNVMSYPNKLGFEQIYL 113
++QNYP+++ P+K+ FE + +
Sbjct: 415 IMQNYPSMVDIPSKISFEVLMM 436
>pdb|2IN6|A Chain A, Wee1 Kinase Complex With Inhibitor Pd311839
pdb|2IO6|A Chain A, Wee1 Kinase Complexed With Inhibitor Pd330961
Length = 287
Score = 25.8 bits (55), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 56 HSHDDIISARFFSDWFIDKARLNNNSFASRDDLYKSLIQNYPNVMSY 102
HSH R+FS W D L N + + L ++ +NY +MSY
Sbjct: 68 HSH----VVRYFSAWAEDDHMLIQNEYCNGGSLADAISENY-RIMSY 109
>pdb|2Z2W|A Chain A, Humand Wee1 Kinase Complexed With Inhibitor Pf0335770
Length = 285
Score = 25.8 bits (55), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 56 HSHDDIISARFFSDWFIDKARLNNNSFASRDDLYKSLIQNYPNVMSY 102
HSH R+FS W D L N + + L ++ +NY +MSY
Sbjct: 66 HSH----VVRYFSAWAEDDHMLIQNEYCNGGSLADAISENY-RIMSY 107
>pdb|1ASH|A Chain A, The Structure Of Ascaris Hemoglobin Domain I At 2.2
Angstroms Resolution: Molecular Features Of Oxygen
Avidity
Length = 150
Score = 25.4 bits (54), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 72 IDKARLNNNSFASRD--DLYKSLIQNYPNVMSY 102
++ A+++ ++ A +D DLYK + +NYP + Y
Sbjct: 12 LEHAKVDTSNEARQDGIDLYKHMFENYPPLRKY 44
>pdb|3CIF|A Chain A, Crystal Structure Of C153s Mutant Glyceraldehyde
3-Phosphate Dehydrogenase From Cryptosporidium Parvum
pdb|3CIF|B Chain B, Crystal Structure Of C153s Mutant Glyceraldehyde
3-Phosphate Dehydrogenase From Cryptosporidium Parvum
pdb|3CIF|C Chain C, Crystal Structure Of C153s Mutant Glyceraldehyde
3-Phosphate Dehydrogenase From Cryptosporidium Parvum
pdb|3CIF|D Chain D, Crystal Structure Of C153s Mutant Glyceraldehyde
3-Phosphate Dehydrogenase From Cryptosporidium Parvum
Length = 359
Score = 25.4 bits (54), Expect = 9.0, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 56 HSHDDIISARFFSDWFIDKARLNNNSFASRDDLYKSLIQNYPNVMSYPNKL 106
++ DD++S F + + L+ N+ + +D + LI Y N Y N+L
Sbjct: 299 YTSDDVVSTDFIGCKY--SSILDKNACIALNDSFVKLISWYDNESGYSNRL 347
>pdb|2QQI|A Chain A, Crystal Structure Of The B1b2 Domains From Human
Neuropilin-1
Length = 318
Score = 25.4 bits (54), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 13/56 (23%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 56 HSHDDIISARFFSDWFIDKARLN--NNSFASRDDLYKSLIQNYPNVMSYPNKLGFE 109
HS S+++ ++W +++RLN N + +D Y+ IQ ++ + +G +
Sbjct: 19 HSDQITASSQYSTNWSAERSRLNYPENGWTPGEDSYREWIQVDLGLLRFVTAVGTQ 74
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,878,552
Number of Sequences: 62578
Number of extensions: 149793
Number of successful extensions: 378
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 372
Number of HSP's gapped (non-prelim): 39
length of query: 115
length of database: 14,973,337
effective HSP length: 78
effective length of query: 37
effective length of database: 10,092,253
effective search space: 373413361
effective search space used: 373413361
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)