Query psy12876
Match_columns 115
No_of_seqs 208 out of 1910
Neff 6.4
Searched_HMMs 46136
Date Fri Aug 16 22:00:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12876.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12876hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1559|consensus 100.0 8.9E-33 1.9E-37 213.0 7.3 109 3-115 229-340 (340)
2 cd01747 GATase1_Glutamyl_Hydro 100.0 1.5E-31 3.2E-36 208.3 11.9 98 5-104 175-273 (273)
3 COG0512 PabA Anthranilate/para 99.4 9.6E-13 2.1E-17 98.3 6.3 44 4-50 137-181 (191)
4 PLN02347 GMP synthetase 99.3 9.1E-12 2E-16 105.2 8.0 60 4-80 149-208 (536)
5 PRK08857 para-aminobenzoate sy 99.3 1.3E-11 2.8E-16 91.3 7.1 46 4-49 135-182 (193)
6 TIGR00888 guaA_Nterm GMP synth 99.2 2.2E-11 4.8E-16 89.3 7.3 57 4-77 131-187 (188)
7 PRK11366 puuD gamma-glutamyl-g 99.2 2.2E-11 4.8E-16 94.0 7.1 58 4-77 188-246 (254)
8 PRK08007 para-aminobenzoate sy 99.2 3.6E-11 7.7E-16 88.8 7.3 40 4-46 135-174 (187)
9 TIGR01368 CPSaseIIsmall carbam 99.2 6.6E-11 1.4E-15 95.8 8.2 56 5-77 301-358 (358)
10 PRK07765 para-aminobenzoate sy 99.2 6.1E-11 1.3E-15 89.5 7.4 58 4-79 139-196 (214)
11 CHL00197 carA carbamoyl-phosph 99.2 6.8E-11 1.5E-15 96.4 8.0 59 4-79 318-378 (382)
12 COG2071 Predicted glutamine am 99.2 3.3E-11 7.1E-16 92.8 5.8 59 4-78 182-241 (243)
13 PRK05670 anthranilate synthase 99.2 1.3E-10 2.8E-15 85.5 7.4 54 5-76 136-189 (189)
14 PLN02335 anthranilate synthase 99.2 1.8E-10 3.9E-15 87.4 8.3 56 4-77 158-215 (222)
15 TIGR00566 trpG_papA glutamine 99.1 9.4E-11 2E-15 86.6 6.5 40 4-46 135-175 (188)
16 PRK00074 guaA GMP synthase; Re 99.1 1.3E-10 2.8E-15 97.6 7.8 61 4-81 136-196 (511)
17 PRK06895 putative anthranilate 99.1 1.3E-10 2.9E-15 85.6 6.6 44 4-50 136-179 (190)
18 PRK05637 anthranilate synthase 99.1 2.2E-10 4.7E-15 86.3 7.8 56 4-73 149-204 (208)
19 CHL00101 trpG anthranilate syn 99.1 2.5E-10 5.4E-15 84.3 7.3 37 5-44 136-173 (190)
20 PRK00758 GMP synthase subunit 99.1 2.6E-10 5.7E-15 83.4 7.3 38 4-44 128-165 (184)
21 PRK06774 para-aminobenzoate sy 99.1 3.4E-10 7.5E-15 83.4 7.5 41 4-44 135-176 (191)
22 PRK12564 carbamoyl phosphate s 99.1 2.9E-10 6.4E-15 92.0 7.7 54 4-74 305-359 (360)
23 PRK07649 para-aminobenzoate/an 99.1 5.5E-10 1.2E-14 83.2 7.7 39 4-45 135-173 (195)
24 cd01744 GATase1_CPSase Small c 99.1 3.5E-10 7.6E-15 82.6 6.3 39 4-45 126-165 (178)
25 cd01743 GATase1_Anthranilate_S 99.1 2.9E-10 6.3E-15 83.0 5.6 42 6-50 134-177 (184)
26 PRK12838 carbamoyl phosphate s 99.0 8.9E-10 1.9E-14 89.1 8.2 56 5-77 295-352 (354)
27 cd01742 GATase1_GMP_Synthase T 99.0 1.5E-09 3.3E-14 78.6 6.1 39 4-45 131-169 (181)
28 PRK14607 bifunctional glutamin 98.9 3.2E-09 6.9E-14 89.6 8.0 55 4-76 136-190 (534)
29 PF00117 GATase: Glutamine ami 98.9 2.3E-09 5E-14 78.1 5.7 52 6-74 140-192 (192)
30 PLN02889 oxo-acid-lyase/anthra 98.9 2.9E-09 6.2E-14 94.6 6.8 41 23-78 298-338 (918)
31 PRK09522 bifunctional glutamin 98.9 8.8E-09 1.9E-13 87.1 9.4 55 4-77 138-192 (531)
32 PRK06186 hypothetical protein; 98.9 4.5E-09 9.7E-14 80.7 6.5 54 7-77 174-228 (229)
33 COG0505 CarA Carbamoylphosphat 98.9 4.5E-09 9.8E-14 84.9 6.3 57 6-79 309-366 (368)
34 PF07722 Peptidase_C26: Peptid 98.9 2.3E-09 5E-14 80.9 3.9 36 4-42 180-217 (217)
35 TIGR01815 TrpE-clade3 anthrani 98.8 1.3E-08 2.8E-13 88.7 8.4 60 4-77 652-711 (717)
36 PLN02771 carbamoyl-phosphate s 98.8 6.6E-09 1.4E-13 85.6 5.5 40 4-46 367-407 (415)
37 cd01746 GATase1_CTP_Synthase T 98.8 1E-08 2.2E-13 78.6 5.2 37 6-45 184-222 (235)
38 PRK13566 anthranilate synthase 98.8 1.9E-08 4.2E-13 87.7 7.3 40 4-46 662-701 (720)
39 KOG1622|consensus 98.8 6.4E-09 1.4E-13 86.4 3.7 76 4-96 151-227 (552)
40 cd01745 GATase1_2 Subgroup of 98.7 2.1E-08 4.5E-13 74.0 6.0 38 5-45 137-175 (189)
41 KOG0026|consensus 98.7 1.1E-08 2.4E-13 75.9 3.8 44 3-49 158-203 (223)
42 PRK05380 pyrG CTP synthetase; 98.7 4.8E-08 1E-12 82.6 6.9 54 8-78 474-529 (533)
43 COG0518 GuaA GMP synthase - Gl 98.7 2.6E-08 5.7E-13 74.8 4.7 56 3-77 141-196 (198)
44 PLN02327 CTP synthase 98.6 1.3E-07 2.9E-12 80.3 6.4 57 7-79 493-550 (557)
45 TIGR00337 PyrG CTP synthase. C 98.5 1.7E-07 3.7E-12 79.3 6.2 35 8-45 474-510 (525)
46 TIGR01823 PabB-fungal aminodeo 98.5 3.7E-07 8E-12 79.9 7.7 53 11-79 156-208 (742)
47 PRK13141 hisH imidazole glycer 98.5 4.7E-07 1E-11 67.2 7.1 52 6-76 152-203 (205)
48 PRK13143 hisH imidazole glycer 98.4 9.3E-07 2E-11 65.7 7.2 36 6-44 148-183 (200)
49 PRK13525 glutamine amidotransf 98.4 1.2E-06 2.6E-11 64.8 6.4 49 4-76 140-188 (189)
50 PRK09065 glutamine amidotransf 98.3 8.8E-07 1.9E-11 67.7 4.9 37 4-44 153-189 (237)
51 cd01748 GATase1_IGP_Synthase T 98.3 2E-06 4.3E-11 63.5 6.3 35 7-44 152-186 (198)
52 PRK13527 glutamine amidotransf 98.3 2.4E-06 5.3E-11 63.4 6.4 49 4-76 150-198 (200)
53 PRK06490 glutamine amidotransf 98.3 1.5E-06 3.3E-11 66.7 5.2 37 4-44 146-182 (239)
54 cd01741 GATase1_1 Subgroup of 98.2 9.6E-07 2.1E-11 64.3 3.5 34 5-42 147-180 (188)
55 PRK13170 hisH imidazole glycer 98.2 3.2E-06 7E-11 62.8 6.1 36 6-44 147-182 (196)
56 TIGR03800 PLP_synth_Pdx2 pyrid 98.2 3.1E-06 6.8E-11 62.5 5.8 35 4-44 139-173 (184)
57 COG0118 HisH Glutamine amidotr 98.2 4.7E-06 1E-10 63.0 6.4 33 9-44 156-188 (204)
58 PRK13181 hisH imidazole glycer 98.2 5.7E-06 1.2E-10 61.2 6.8 33 9-44 153-185 (199)
59 CHL00188 hisH imidazole glycer 98.2 4.5E-06 9.7E-11 63.0 6.2 34 9-44 161-195 (210)
60 PRK13146 hisH imidazole glycer 98.1 8.2E-06 1.8E-10 61.2 6.4 33 9-44 161-193 (209)
61 PRK07567 glutamine amidotransf 98.1 4.9E-06 1.1E-10 63.9 5.0 37 4-44 157-193 (242)
62 TIGR01737 FGAM_synth_I phospho 98.0 3.1E-06 6.7E-11 64.3 2.4 41 17-63 179-219 (227)
63 PRK14004 hisH imidazole glycer 98.0 1.5E-05 3.3E-10 60.1 5.9 33 10-44 163-195 (210)
64 COG0504 PyrG CTP synthase (UTP 97.9 2.3E-05 5E-10 66.0 6.3 57 7-79 473-530 (533)
65 PRK13152 hisH imidazole glycer 97.9 2.9E-05 6.3E-10 57.7 6.0 32 10-44 156-187 (201)
66 PRK13142 hisH imidazole glycer 97.9 3.4E-05 7.3E-10 57.8 6.2 31 11-44 143-173 (192)
67 PRK05665 amidotransferase; Pro 97.9 2E-05 4.4E-10 60.6 5.0 37 4-44 153-189 (240)
68 TIGR01855 IMP_synth_hisH imida 97.9 3.8E-05 8.2E-10 56.9 6.3 30 12-44 153-182 (196)
69 PRK08250 glutamine amidotransf 97.8 2.8E-05 6E-10 59.4 4.6 36 5-44 148-183 (235)
70 KOG0370|consensus 97.8 3.2E-05 7E-10 69.5 5.4 63 3-82 296-359 (1435)
71 PRK07053 glutamine amidotransf 97.8 3.2E-05 6.9E-10 59.2 4.4 36 5-44 146-181 (234)
72 cd01749 GATase1_PB Glutamine A 97.7 3.2E-05 7E-10 56.7 3.8 34 5-44 140-173 (183)
73 PLN02617 imidazole glycerol ph 97.7 0.00014 3.1E-09 61.9 7.1 31 11-44 165-195 (538)
74 KOG1224|consensus 97.6 5.9E-05 1.3E-09 64.5 4.1 65 5-84 161-226 (767)
75 PLN02832 glutamine amidotransf 97.1 0.0011 2.4E-08 51.5 5.5 21 22-44 181-201 (248)
76 PRK05368 homoserine O-succinyl 96.8 0.0019 4.1E-08 51.6 4.6 37 5-44 203-239 (302)
77 PRK03619 phosphoribosylformylg 96.7 0.0021 4.5E-08 48.7 4.0 55 8-72 160-217 (219)
78 KOG0623|consensus 96.6 0.0019 4.1E-08 53.1 3.2 37 5-44 156-193 (541)
79 KOG2387|consensus 95.4 0.0073 1.6E-07 51.0 1.5 39 7-47 494-533 (585)
80 KOG3179|consensus 93.3 0.18 3.8E-06 38.9 4.7 79 5-93 160-238 (245)
81 PRK01175 phosphoribosylformylg 81.3 1.8 3.9E-05 33.8 3.3 26 24-49 208-233 (261)
82 PF13507 GATase_5: CobB/CobQ-l 81.0 3.7 7.9E-05 32.1 4.9 27 24-50 209-235 (259)
83 PRK13526 glutamine amidotransf 76.5 5.8 0.00013 29.5 4.6 34 5-44 134-167 (179)
84 cd01740 GATase1_FGAR_AT Type 1 75.2 2.1 4.5E-05 32.6 1.9 26 24-49 195-220 (238)
85 COG0311 PDX2 Predicted glutami 73.3 16 0.00035 27.6 6.2 32 7-44 146-177 (194)
86 PF01174 SNO: SNO glutamine am 72.8 9.6 0.00021 28.7 4.9 31 8-44 142-172 (188)
87 PF04204 HTS: Homoserine O-suc 63.2 15 0.00033 29.5 4.5 35 7-44 204-238 (298)
88 COG0047 PurL Phosphoribosylfor 60.8 16 0.00034 28.4 4.1 34 16-49 181-214 (231)
89 KOG3210|consensus 44.3 46 0.001 25.2 4.2 25 19-44 181-205 (226)
90 PF00400 WD40: WD domain, G-be 41.0 51 0.0011 16.7 3.3 21 24-44 4-24 (39)
91 KOG1273|consensus 39.6 15 0.00032 30.3 1.0 14 31-44 106-119 (405)
92 TIGR01001 metA homoserine O-su 35.1 64 0.0014 26.0 4.0 34 8-44 205-238 (300)
93 PF14124 DUF4291: Domain of un 35.1 20 0.00044 26.8 1.1 12 35-46 109-120 (181)
94 PF08343 RNR_N: Ribonucleotide 30.2 46 0.00099 21.6 2.0 31 65-95 24-54 (82)
95 smart00320 WD40 WD40 repeats. 27.1 71 0.0015 14.1 3.3 20 24-43 5-24 (40)
96 PHA03366 FGAM-synthase; Provis 25.2 43 0.00092 32.1 1.6 27 24-50 1247-1273(1304)
97 TIGR01739 tegu_FGAM_synt herpe 24.5 43 0.00093 31.7 1.5 27 24-50 1148-1174(1202)
98 PRK05297 phosphoribosylformylg 24.2 45 0.00097 31.9 1.6 27 24-50 1239-1265(1290)
99 PLN03206 phosphoribosylformylg 22.7 47 0.001 31.9 1.4 27 24-50 1252-1278(1307)
100 PF01606 Arteri_env: Arterivir 22.6 15 0.00033 27.7 -1.5 10 35-44 120-129 (214)
101 PF10210 MRP-S32: Mitochondria 22.5 2.5E+02 0.0054 18.8 4.9 14 37-50 16-30 (96)
102 TIGR01735 FGAM_synt phosphorib 22.0 43 0.00094 32.1 1.0 27 24-50 1260-1286(1310)
103 TIGR01857 FGAM-synthase phosph 20.7 1.1E+02 0.0024 29.3 3.4 25 24-48 1195-1219(1239)
104 KOG0717|consensus 20.3 61 0.0013 27.9 1.5 14 31-44 28-41 (508)
No 1
>KOG1559|consensus
Probab=99.98 E-value=8.9e-33 Score=213.03 Aligned_cols=109 Identities=39% Similarity=0.673 Sum_probs=100.0
Q ss_pred cCCCCCCcEEEEEecCC-CCeeEEEEEeCCCcEEEEeecCCCCccccccCCCCCCCHhHHHHHHHHHHHHHHHHHhCCCC
Q psy12876 3 KYGLTETWNILTLSKYK-SWEFVSTVEHKEYPIVGIQFHPEKNAYEWTESQHNPHSHDDIISARFFSDWFIDKARLNNNS 81 (115)
Q Consensus 3 ~~~L~~~f~v~a~s~d~-~~~fv~aie~~~~pi~gvQfHPE~~~~e~~~~~~~~hs~~~~~~~q~l~~fFv~~ar~~~~~ 81 (115)
+..|.+.|+|+.++.|+ ..+||+++++++||++|+|||||++++|||... +||++++++++|+.+++||++||++.|+
T Consensus 229 N~~Ls~FFnilTT~~D~~~k~fvSTv~~~kYPvtgfQWHPEKnafEWgss~-IpHsedAiqvtqhaA~~lVsEARKs~nr 307 (340)
T KOG1559|consen 229 NPALSSFFNILTTCTDGNSKTFVSTVESKKYPVTGFQWHPEKNAFEWGSSD-IPHSEDAIQVTQHAANYLVSEARKSLNR 307 (340)
T ss_pred CHHHHHHHhheeeecCCCceEEEEeecceeccceeeeecCccCccccccCC-CCCChhHHHHHHHHHHHHHHHHHhhcCC
Confidence 44677889999999755 789999999999999999999999999999854 9999999999999999999999999999
Q ss_pred CCCHHHHHhhccccccccccCCCCC--ceeEEEecC
Q psy12876 82 FASRDDLYKSLIQNYPNVMSYPNKL--GFEQIYLFK 115 (115)
Q Consensus 82 f~~~~~~~~~li~n~~~~~~~~~~~--~~~q~Y~f~ 115 (115)
|+|. ++.+.|||||.|+ |||.. +|+|||+|+
T Consensus 308 p~Se-kvlsnLIYnykPt--Y~Gy~gsg~devYIFt 340 (340)
T KOG1559|consen 308 PESE-KVLSNLIYNYKPT--YCGYAGSGYDEVYIFT 340 (340)
T ss_pred ccHH-HHHHHHHhccCcc--eeccccCccceEEeeC
Confidence 9885 7788999999999 99944 899999995
No 2
>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.97 E-value=1.5e-31 Score=208.29 Aligned_cols=98 Identities=43% Similarity=0.791 Sum_probs=91.9
Q ss_pred CCCCCcEEEEEec-CCCCeeEEEEEeCCCcEEEEeecCCCCccccccCCCCCCCHhHHHHHHHHHHHHHHHHHhCCCCCC
Q psy12876 5 GLTETWNILTLSK-YKSWEFVSTVEHKEYPIVGIQFHPEKNAYEWTESQHNPHSHDDIISARFFSDWFIDKARLNNNSFA 83 (115)
Q Consensus 5 ~L~~~f~v~a~s~-d~~~~fv~aie~~~~pi~gvQfHPE~~~~e~~~~~~~~hs~~~~~~~q~l~~fFv~~ar~~~~~f~ 83 (115)
.|++.|+++|++. +++.+||++++++++|+||+|||||++++||+....++||.++++++|++++||+++||+|.|+|.
T Consensus 175 ~l~~~~~vla~~~d~~g~~fis~ie~~~~pi~gvQFHPEks~few~~~~~~~hs~~ai~~~q~~a~ffv~e~r~n~~~f~ 254 (273)
T cd01747 175 LLSDFFNVLTTNDDWNGVEFISTVEAYKYPIYGVQWHPEKNAFEWKKSSSIPHSEEAIRLTQYFANFFVNEARKSNNRFE 254 (273)
T ss_pred ccccceEEEEEEecCCCceEEEEEEecCCceEEEecCCCcccccccccCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 4557789999987 468899999999999999999999999999998778999999999999999999999999999999
Q ss_pred CHHHHHhhccccccccccCCC
Q psy12876 84 SRDDLYKSLIQNYPNVMSYPN 104 (115)
Q Consensus 84 ~~~~~~~~li~n~~~~~~~~~ 104 (115)
+.+||.++|||||+|+ |||
T Consensus 255 ~~~~~~~~lIyn~~p~--~~~ 273 (273)
T cd01747 255 SAEEETKHLIYNYKPT--YTG 273 (273)
T ss_pred CHHHHHHhhhccCCCc--cCC
Confidence 9999999999999999 886
No 3
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.38 E-value=9.6e-13 Score=98.32 Aligned_cols=44 Identities=34% Similarity=0.508 Sum_probs=39.0
Q ss_pred CCCCCCcEEEEEecCC-CCeeEEEEEeCCCcEEEEeecCCCCcccccc
Q psy12876 4 YGLTETWNILTLSKYK-SWEFVSTVEHKEYPIVGIQFHPEKNAYEWTE 50 (115)
Q Consensus 4 ~~L~~~f~v~a~s~d~-~~~fv~aie~~~~pi~gvQfHPE~~~~e~~~ 50 (115)
..+|+.++++|+++|+ . |||++|+++|++|||||||+.+++.|.
T Consensus 137 ~~lP~~l~vtA~~~d~~~---IMai~h~~~pi~gvQFHPESilT~~G~ 181 (191)
T COG0512 137 ETLPEELEVTAESEDGGV---IMAVRHKKLPIYGVQFHPESILTEYGH 181 (191)
T ss_pred CCCCCceEEEEEeCCCCE---EEEEeeCCCCEEEEecCCccccccchH
Confidence 3599999999999754 6 999999999999999999999887653
No 4
>PLN02347 GMP synthetase
Probab=99.29 E-value=9.1e-12 Score=105.15 Aligned_cols=60 Identities=25% Similarity=0.480 Sum_probs=53.4
Q ss_pred CCCCCCcEEEEEecCCCCeeEEEEEeCCCcEEEEeecCCCCccccccCCCCCCCHhHHHHHHHHHHHHHHHHHhCCC
Q psy12876 4 YGLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNAYEWTESQHNPHSHDDIISARFFSDWFIDKARLNNN 80 (115)
Q Consensus 4 ~~L~~~f~v~a~s~d~~~~fv~aie~~~~pi~gvQfHPE~~~~e~~~~~~~~hs~~~~~~~q~l~~fFv~~ar~~~~ 80 (115)
..||++|+++|+++++. ++|+++++.|+||+|||||+. |++.|.++ |.||+.++|+++..
T Consensus 149 ~~lP~g~~vlA~s~~~~---iaai~~~~~~i~GvQFHPE~~-----------~t~~G~~i---L~NFl~~ic~~~~~ 208 (536)
T PLN02347 149 VKLPEGFEVVAKSVQGA---VVAIENRERRIYGLQYHPEVT-----------HSPKGMET---LRHFLFDVCGVTAD 208 (536)
T ss_pred eeCCCCCEEEEEeCCCc---EEEEEECCCCEEEEEccCCCC-----------ccchHHHH---HHHHHHHHhCcCCC
Confidence 36899999999998887 999999999999999999994 77888765 99999999999863
No 5
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=99.27 E-value=1.3e-11 Score=91.32 Aligned_cols=46 Identities=28% Similarity=0.396 Sum_probs=38.6
Q ss_pred CCCCCCcEEEEEec--CCCCeeEEEEEeCCCcEEEEeecCCCCccccc
Q psy12876 4 YGLTETWNILTLSK--YKSWEFVSTVEHKEYPIVGIQFHPEKNAYEWT 49 (115)
Q Consensus 4 ~~L~~~f~v~a~s~--d~~~~fv~aie~~~~pi~gvQfHPE~~~~e~~ 49 (115)
.+||++++++|++. |+....|++++++++|+||||||||+..++||
T Consensus 135 ~~lp~~~~v~a~s~~~~~~~~~i~~~~~~~~pi~gvQfHPE~~~t~~g 182 (193)
T PRK08857 135 DTLPECFELTAWTELEDGSMDEIMGFQHKTLPIEAVQFHPESIKTEQG 182 (193)
T ss_pred CCCCCCeEEEEEecCcCCCcceEEEEEeCCCCEEEEeeCCCcCCCcch
Confidence 47899999999986 55556799999999999999999999755543
No 6
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=99.25 E-value=2.2e-11 Score=89.34 Aligned_cols=57 Identities=30% Similarity=0.473 Sum_probs=46.2
Q ss_pred CCCCCCcEEEEEecCCCCeeEEEEEeCCCcEEEEeecCCCCccccccCCCCCCCHhHHHHHHHHHHHHHHHHHh
Q psy12876 4 YGLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNAYEWTESQHNPHSHDDIISARFFSDWFIDKARL 77 (115)
Q Consensus 4 ~~L~~~f~v~a~s~d~~~~fv~aie~~~~pi~gvQfHPE~~~~e~~~~~~~~hs~~~~~~~q~l~~fFv~~ar~ 77 (115)
..||++++++|+++++. ++|+++++.|++|+|||||+. ++..|.++ |.+|+.++||+
T Consensus 131 ~~l~~~~~vla~~~~~~---v~a~~~~~~~~~g~QfHPE~~-----------~~~~g~~i---~~~f~~~~~~~ 187 (188)
T TIGR00888 131 KELPEGFKVLATSDNCP---VAAMAHEEKPIYGVQFHPEVT-----------HTEYGNEL---LENFVYDVCGC 187 (188)
T ss_pred ecCCCCCEEEEECCCCC---eEEEEECCCCEEEEeeCCccC-----------CChhhHHH---HHHHHHHhhCC
Confidence 35899999999998777 999999999999999999995 44455543 77766558876
No 7
>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional
Probab=99.24 E-value=2.2e-11 Score=93.99 Aligned_cols=58 Identities=24% Similarity=0.359 Sum_probs=47.4
Q ss_pred CCCCCCcEEEEEecCCCCeeEEEEEeCCCcE-EEEeecCCCCccccccCCCCCCCHhHHHHHHHHHHHHHHHHHh
Q psy12876 4 YGLTETWNILTLSKYKSWEFVSTVEHKEYPI-VGIQFHPEKNAYEWTESQHNPHSHDDIISARFFSDWFIDKARL 77 (115)
Q Consensus 4 ~~L~~~f~v~a~s~d~~~~fv~aie~~~~pi-~gvQfHPE~~~~e~~~~~~~~hs~~~~~~~q~l~~fFv~~ar~ 77 (115)
+.||++++++|+++||. |+|++++++|+ +|||||||+...+. +. .+.|++.|++.|+.
T Consensus 188 ~~l~~gl~v~A~s~dg~---ieAie~~~~~~~~GVQwHPE~~~~~~-----------~~--~~~lf~~fv~~~~~ 246 (254)
T PRK11366 188 KVVSPRLRVEARSPDGL---VEAVSVINHPFALGVQWHPEWNSSEY-----------AL--SRILFEGFITACQH 246 (254)
T ss_pred hhcccceEEEEEcCCCc---EEEEEeCCCCCEEEEEeCCCcCCCCC-----------ch--HHHHHHHHHHHHHH
Confidence 57899999999999998 99999999885 99999999864321 11 25589889999975
No 8
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=99.22 E-value=3.6e-11 Score=88.83 Aligned_cols=40 Identities=23% Similarity=0.513 Sum_probs=36.5
Q ss_pred CCCCCCcEEEEEecCCCCeeEEEEEeCCCcEEEEeecCCCCcc
Q psy12876 4 YGLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNAY 46 (115)
Q Consensus 4 ~~L~~~f~v~a~s~d~~~~fv~aie~~~~pi~gvQfHPE~~~~ 46 (115)
..||++++++|++.|+. |+|++++++|++|||||||+..+
T Consensus 135 ~~lp~~~~v~a~~~~~~---i~a~~~~~~~i~GvQfHPE~~~t 174 (187)
T PRK08007 135 DSLPACFEVTAWSETRE---IMGIRHRQWDLEGVQFHPESILS 174 (187)
T ss_pred CCCCCCeEEEEEeCCCc---EEEEEeCCCCEEEEEeCCcccCC
Confidence 46899999999999888 99999999999999999999743
No 9
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit. This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.
Probab=99.19 E-value=6.6e-11 Score=95.76 Aligned_cols=56 Identities=27% Similarity=0.541 Sum_probs=46.3
Q ss_pred CCC-CCcEEEEEec-CCCCeeEEEEEeCCCcEEEEeecCCCCccccccCCCCCCCHhHHHHHHHHHHHHHHHHHh
Q psy12876 5 GLT-ETWNILTLSK-YKSWEFVSTVEHKEYPIVGIQFHPEKNAYEWTESQHNPHSHDDIISARFFSDWFIDKARL 77 (115)
Q Consensus 5 ~L~-~~f~v~a~s~-d~~~~fv~aie~~~~pi~gvQfHPE~~~~e~~~~~~~~hs~~~~~~~q~l~~fFv~~ar~ 77 (115)
.|+ ++|++++++. |+. |+|++++++|++|||||||+.+. +|+ +++||+-|++.|++
T Consensus 301 ~l~~~~l~vta~~~nDg~---Vegi~h~~~pi~gVQfHPE~~~g--------p~d------~~~lF~~F~~~~~~ 358 (358)
T TIGR01368 301 SLPAGDLEVTHVNLNDGT---VEGIRHKDLPVFSVQYHPEASPG--------PHD------TEYLFDEFIDLIKK 358 (358)
T ss_pred ccCCCceEEEEEECCCCc---EEEEEECCCCEEEEEECCCCCCC--------CCC------hHHHHHHHHHHhhC
Confidence 456 6899999985 888 99999999999999999999743 244 46799999988753
No 10
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=99.19 E-value=6.1e-11 Score=89.45 Aligned_cols=58 Identities=24% Similarity=0.477 Sum_probs=47.1
Q ss_pred CCCCCCcEEEEEecCCCCeeEEEEEeCCCcEEEEeecCCCCccccccCCCCCCCHhHHHHHHHHHHHHHHHHHhCC
Q psy12876 4 YGLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNAYEWTESQHNPHSHDDIISARFFSDWFIDKARLNN 79 (115)
Q Consensus 4 ~~L~~~f~v~a~s~d~~~~fv~aie~~~~pi~gvQfHPE~~~~e~~~~~~~~hs~~~~~~~q~l~~fFv~~ar~~~ 79 (115)
..||++++++|++.++. ++|+++++.|++|||||||+. ++..|. +.|.+|+ ..|+...
T Consensus 139 ~~lp~~~~vla~s~~~~---vqa~~~~~~~i~gvQfHPE~~-----------~t~~g~---~~l~~f~-~~~~~~~ 196 (214)
T PRK07765 139 ETLPAELEVTARTDSGV---IMAVRHRELPIHGVQFHPESV-----------LTEGGH---RMLANWL-TVCGWAP 196 (214)
T ss_pred ccCCCceEEEEEcCCCc---EEEEEeCCCCEEEEeeCCCcc-----------cCcchH---HHHHHHH-HHhcccc
Confidence 46899999999998888 999999999999999999996 344444 3488887 6786654
No 11
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=99.19 E-value=6.8e-11 Score=96.42 Aligned_cols=59 Identities=24% Similarity=0.508 Sum_probs=48.5
Q ss_pred CCCCC-CcEEEEEec-CCCCeeEEEEEeCCCcEEEEeecCCCCccccccCCCCCCCHhHHHHHHHHHHHHHHHHHhCC
Q psy12876 4 YGLTE-TWNILTLSK-YKSWEFVSTVEHKEYPIVGIQFHPEKNAYEWTESQHNPHSHDDIISARFFSDWFIDKARLNN 79 (115)
Q Consensus 4 ~~L~~-~f~v~a~s~-d~~~~fv~aie~~~~pi~gvQfHPE~~~~e~~~~~~~~hs~~~~~~~q~l~~fFv~~ar~~~ 79 (115)
..++. ++++++.+. |+. |++++++++|++|||||||+.+. +|+ +++|++.|++.|+++.
T Consensus 318 ~sv~~~~~~vt~~~~nDgt---vegi~h~~~pi~gVQFHPE~~~g--------p~d------~~~lf~~Fv~~~~~~~ 378 (382)
T CHL00197 318 ESLAKNKFYITHFNLNDGT---VAGISHSPKPYFSVQYHPEASPG--------PHD------ADYLFEYFIEIIKHSK 378 (382)
T ss_pred cccCCCCcEEEEEECCCCC---EEEEEECCCCcEEEeeCCCCCCC--------CCC------HHHHHHHHHHHHHhhh
Confidence 34554 699999885 777 99999999999999999999754 355 3679999999998764
No 12
>COG2071 Predicted glutamine amidotransferases [General function prediction only]
Probab=99.19 E-value=3.3e-11 Score=92.84 Aligned_cols=59 Identities=19% Similarity=0.208 Sum_probs=48.3
Q ss_pred CCCCCCcEEEEEecCCCCeeEEEEEeCC-CcEEEEeecCCCCccccccCCCCCCCHhHHHHHHHHHHHHHHHHHhC
Q psy12876 4 YGLTETWNILTLSKYKSWEFVSTVEHKE-YPIVGIQFHPEKNAYEWTESQHNPHSHDDIISARFFSDWFIDKARLN 78 (115)
Q Consensus 4 ~~L~~~f~v~a~s~d~~~~fv~aie~~~-~pi~gvQfHPE~~~~e~~~~~~~~hs~~~~~~~q~l~~fFv~~ar~~ 78 (115)
++|+++|+|+|+++||. |||+|+++ ..+.|||||||...-+ . ..++.||+.|+++|+..
T Consensus 182 k~La~~L~V~A~a~DG~---VEAie~~~~~fvlGVQWHPE~~~~~---------~----~~~~~LFe~F~~~~~~~ 241 (243)
T COG2071 182 KKLAPGLVVEARAPDGT---VEAVEVKNDAFVLGVQWHPEYLVDT---------N----PLSLALFEAFVNACKKH 241 (243)
T ss_pred HHhCCCcEEEEECCCCc---EEEEEecCCceEEEEecChhhhccC---------C----hHHHHHHHHHHHHHHhh
Confidence 47899999999999999 99999996 5578999999985221 1 12467999999999865
No 13
>PRK05670 anthranilate synthase component II; Provisional
Probab=99.15 E-value=1.3e-10 Score=85.51 Aligned_cols=54 Identities=30% Similarity=0.495 Sum_probs=43.6
Q ss_pred CCCCCcEEEEEecCCCCeeEEEEEeCCCcEEEEeecCCCCccccccCCCCCCCHhHHHHHHHHHHHHHHHHH
Q psy12876 5 GLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNAYEWTESQHNPHSHDDIISARFFSDWFIDKAR 76 (115)
Q Consensus 5 ~L~~~f~v~a~s~d~~~~fv~aie~~~~pi~gvQfHPE~~~~e~~~~~~~~hs~~~~~~~q~l~~fFv~~ar 76 (115)
.||++++++|+++++. ++|+++++.|++|+|||||+..+ ..| +.|++-|++.||
T Consensus 136 ~lp~~~~~la~s~~~~---i~a~~~~~~~~~gvQfHPE~~~~-----------~~g----~~i~~~F~~~~~ 189 (189)
T PRK05670 136 SLPDCLEVTAWTDDGE---IMGVRHKELPIYGVQFHPESILT-----------EHG----HKLLENFLELAR 189 (189)
T ss_pred cCCCceEEEEEeCCCc---EEEEEECCCCEEEEeeCCCcCCC-----------cch----HHHHHHHHHhhC
Confidence 5899999999998777 99999999999999999999532 222 447777777764
No 14
>PLN02335 anthranilate synthase
Probab=99.15 E-value=1.8e-10 Score=87.38 Aligned_cols=56 Identities=20% Similarity=0.359 Sum_probs=43.4
Q ss_pred CCCCCC-cEEEEEecCCCCeeEEEEEeCCCc-EEEEeecCCCCccccccCCCCCCCHhHHHHHHHHHHHHHHHHHh
Q psy12876 4 YGLTET-WNILTLSKYKSWEFVSTVEHKEYP-IVGIQFHPEKNAYEWTESQHNPHSHDDIISARFFSDWFIDKARL 77 (115)
Q Consensus 4 ~~L~~~-f~v~a~s~d~~~~fv~aie~~~~p-i~gvQfHPE~~~~e~~~~~~~~hs~~~~~~~q~l~~fFv~~ar~ 77 (115)
.++|++ ++++|++.++. |++++++++| +||||||||+.. +..| ..|++-|++.|+.
T Consensus 158 ~~lp~~~~~v~a~~~~~~---v~ai~~~~~~~i~GvQfHPE~~~-----------~~~g----~~i~~nF~~~~~~ 215 (222)
T PLN02335 158 DTFPSDELEVTAWTEDGL---IMAARHRKYKHIQGVQFHPESII-----------TTEG----KTIVRNFIKIIEK 215 (222)
T ss_pred ccCCCCceEEEEEcCCCC---EEEEEecCCCCEEEEEeCCCCCC-----------ChhH----HHHHHHHHHHHHh
Confidence 457776 99999998888 9999999988 999999999963 3334 3366666677743
No 15
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=99.15 E-value=9.4e-11 Score=86.56 Aligned_cols=40 Identities=23% Similarity=0.479 Sum_probs=35.2
Q ss_pred CCCCCCcEEEEEecC-CCCeeEEEEEeCCCcEEEEeecCCCCcc
Q psy12876 4 YGLTETWNILTLSKY-KSWEFVSTVEHKEYPIVGIQFHPEKNAY 46 (115)
Q Consensus 4 ~~L~~~f~v~a~s~d-~~~~fv~aie~~~~pi~gvQfHPE~~~~ 46 (115)
..||++++++|++.+ +. ++|++++++|++|||||||+..+
T Consensus 135 ~~l~~~~~v~a~s~~~~~---v~a~~~~~~~i~gvQfHPE~~~t 175 (188)
T TIGR00566 135 ETLPTCFPVTAWEEENIE---IMAIRHRDLPLEGVQFHPESILS 175 (188)
T ss_pred ccCCCceEEEEEcCCCCE---EEEEEeCCCCEEEEEeCCCccCC
Confidence 478999999999975 46 99999999999999999999744
No 16
>PRK00074 guaA GMP synthase; Reviewed
Probab=99.14 E-value=1.3e-10 Score=97.58 Aligned_cols=61 Identities=18% Similarity=0.380 Sum_probs=52.5
Q ss_pred CCCCCCcEEEEEecCCCCeeEEEEEeCCCcEEEEeecCCCCccccccCCCCCCCHhHHHHHHHHHHHHHHHHHhCCCC
Q psy12876 4 YGLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNAYEWTESQHNPHSHDDIISARFFSDWFIDKARLNNNS 81 (115)
Q Consensus 4 ~~L~~~f~v~a~s~d~~~~fv~aie~~~~pi~gvQfHPE~~~~e~~~~~~~~hs~~~~~~~q~l~~fFv~~ar~~~~~ 81 (115)
..||++++++|++.++. ++++++.+.|+||+|||||+. |++.|.++ |.||+.++|++..+.
T Consensus 136 ~~lp~g~~vlA~s~~~~---v~ai~~~~~~i~GvQFHPE~~-----------~t~~G~~i---l~nFl~~i~~~~~~~ 196 (511)
T PRK00074 136 TELPEGFKVIASTENCP---IAAIANEERKFYGVQFHPEVT-----------HTPQGKKL---LENFVFDICGCKGDW 196 (511)
T ss_pred EecCCCcEEEEEeCCCC---EEEEEeCCCCEEEEeCCCCcC-----------CchhHHHH---HHHHHHHhcCCCCCc
Confidence 35899999999998888 999999999999999999995 77777754 899988999887643
No 17
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=99.13 E-value=1.3e-10 Score=85.62 Aligned_cols=44 Identities=32% Similarity=0.536 Sum_probs=37.6
Q ss_pred CCCCCCcEEEEEecCCCCeeEEEEEeCCCcEEEEeecCCCCcccccc
Q psy12876 4 YGLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNAYEWTE 50 (115)
Q Consensus 4 ~~L~~~f~v~a~s~d~~~~fv~aie~~~~pi~gvQfHPE~~~~e~~~ 50 (115)
..||+.+.++|.+.++. +++++++++|+||+|||||+..++||.
T Consensus 136 ~~lp~~l~~~a~~~~~~---i~a~~~~~~pi~GvQFHPE~~~~~~g~ 179 (190)
T PRK06895 136 ENFPTPLEITAVCDENV---VMAMQHKTLPIYGVQFHPESYISEFGE 179 (190)
T ss_pred cccCCCeEEEEECCCCc---EEEEEECCCCEEEEEeCCCcCCCcchH
Confidence 35788899998887666 999999999999999999998777653
No 18
>PRK05637 anthranilate synthase component II; Provisional
Probab=99.13 E-value=2.2e-10 Score=86.29 Aligned_cols=56 Identities=20% Similarity=0.178 Sum_probs=43.4
Q ss_pred CCCCCCcEEEEEecCCCCeeEEEEEeCCCcEEEEeecCCCCccccccCCCCCCCHhHHHHHHHHHHHHHH
Q psy12876 4 YGLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNAYEWTESQHNPHSHDDIISARFFSDWFID 73 (115)
Q Consensus 4 ~~L~~~f~v~a~s~d~~~~fv~aie~~~~pi~gvQfHPE~~~~e~~~~~~~~hs~~~~~~~q~l~~fFv~ 73 (115)
.++|++++++|+++++....++++++++.|+||||||||+. ||+.|.++ |.||+-+
T Consensus 149 ~~lp~~~~vlA~s~~~~~~v~~a~~~~~~~~~GvQfHPE~~-----------~T~~G~~i---l~nfl~~ 204 (208)
T PRK05637 149 VVAPDGMESLGTCSSEIGPVIMAAETTDGKAIGLQFHPESV-----------LSPTGPII---LSRCVEQ 204 (208)
T ss_pred hcCCCCeEEEEEecCCCCCEEEEEEECCCCEEEEEeCCccC-----------cCCCHHHH---HHHHHHH
Confidence 46899999999986432234899999999999999999985 77777654 6666543
No 19
>CHL00101 trpG anthranilate synthase component 2
Probab=99.11 E-value=2.5e-10 Score=84.33 Aligned_cols=37 Identities=32% Similarity=0.541 Sum_probs=34.6
Q ss_pred CCCCCcEEEEEecCCCCeeEEEEEeCCCc-EEEEeecCCCC
Q psy12876 5 GLTETWNILTLSKYKSWEFVSTVEHKEYP-IVGIQFHPEKN 44 (115)
Q Consensus 5 ~L~~~f~v~a~s~d~~~~fv~aie~~~~p-i~gvQfHPE~~ 44 (115)
.||++++++|+++++. +++++++++| ++|||||||+.
T Consensus 136 ~lp~~~~vla~s~~~~---v~a~~~~~~~~i~gvQfHPE~~ 173 (190)
T CHL00101 136 NLPSPLEITAWTEDGL---IMACRHKKYKMLRGIQFHPESL 173 (190)
T ss_pred cCCCceEEEEEcCCCc---EEEEEeCCCCCEEEEEeCCccC
Confidence 6899999999998888 9999999999 99999999995
No 20
>PRK00758 GMP synthase subunit A; Validated
Probab=99.11 E-value=2.6e-10 Score=83.36 Aligned_cols=38 Identities=42% Similarity=0.666 Sum_probs=34.9
Q ss_pred CCCCCCcEEEEEecCCCCeeEEEEEeCCCcEEEEeecCCCC
Q psy12876 4 YGLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKN 44 (115)
Q Consensus 4 ~~L~~~f~v~a~s~d~~~~fv~aie~~~~pi~gvQfHPE~~ 44 (115)
..||++++++|+++++. |+|+++++.|++|+|||||+.
T Consensus 128 ~~l~~~~~~la~~~~~~---v~a~~~~~~~~~g~QfHPE~~ 165 (184)
T PRK00758 128 KELPDGFEILARSDICE---VEAMKHKEKPIYGVQFHPEVA 165 (184)
T ss_pred hhCCCCCEEEEECCCCC---EEEEEECCCCEEEEEcCCccC
Confidence 36899999999998888 999999999999999999995
No 21
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=99.10 E-value=3.4e-10 Score=83.39 Aligned_cols=41 Identities=24% Similarity=0.470 Sum_probs=34.3
Q ss_pred CCCCCCcEEEEEec-CCCCeeEEEEEeCCCcEEEEeecCCCC
Q psy12876 4 YGLTETWNILTLSK-YKSWEFVSTVEHKEYPIVGIQFHPEKN 44 (115)
Q Consensus 4 ~~L~~~f~v~a~s~-d~~~~fv~aie~~~~pi~gvQfHPE~~ 44 (115)
..||++++++|++. ++..+-|+++++++.|++|||||||+.
T Consensus 135 ~~lp~~~~vlA~s~~d~~~~~i~~~~~~~~~i~GvQfHPE~~ 176 (191)
T PRK06774 135 DSLPGCFELTAWSERGGEMDEIMGIRHRTLPLEGVQFHPESI 176 (191)
T ss_pred cCCCCCeEEEEEeCCCCCcceEEEEEeCCCCEEEEEECCCcC
Confidence 46899999999997 544345778899989999999999995
No 22
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed
Probab=99.10 E-value=2.9e-10 Score=92.04 Aligned_cols=54 Identities=22% Similarity=0.450 Sum_probs=44.3
Q ss_pred CCCCCCcEEEEEec-CCCCeeEEEEEeCCCcEEEEeecCCCCccccccCCCCCCCHhHHHHHHHHHHHHHHH
Q psy12876 4 YGLTETWNILTLSK-YKSWEFVSTVEHKEYPIVGIQFHPEKNAYEWTESQHNPHSHDDIISARFFSDWFIDK 74 (115)
Q Consensus 4 ~~L~~~f~v~a~s~-d~~~~fv~aie~~~~pi~gvQfHPE~~~~e~~~~~~~~hs~~~~~~~q~l~~fFv~~ 74 (115)
.+||++++++|++. |+. |+|++++++|+||||||||+.+.+ ++ ++.|++-|++.
T Consensus 305 ~~lp~~l~v~a~~~~Dg~---iegi~~~~~pi~gVQfHPE~~~gp--------~d------~~~lF~~F~~~ 359 (360)
T PRK12564 305 DSLPANLEVTHVNLNDGT---VEGLRHKDLPAFSVQYHPEASPGP--------HD------SAYLFDEFVEL 359 (360)
T ss_pred cccCCceEEEEEeCCCCc---EEEEEECCCCEEEEEeCCcCCCCC--------CC------HHHHHHHHHHh
Confidence 47889999999995 777 999999999999999999997542 33 35688877764
No 23
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=99.07 E-value=5.5e-10 Score=83.19 Aligned_cols=39 Identities=28% Similarity=0.532 Sum_probs=35.4
Q ss_pred CCCCCCcEEEEEecCCCCeeEEEEEeCCCcEEEEeecCCCCc
Q psy12876 4 YGLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNA 45 (115)
Q Consensus 4 ~~L~~~f~v~a~s~d~~~~fv~aie~~~~pi~gvQfHPE~~~ 45 (115)
..||++++++|.++++. ++|+++++.|+||+|||||+..
T Consensus 135 ~~lp~~~~~~a~s~~~~---v~a~~~~~~~i~gvQFHPE~~~ 173 (195)
T PRK07649 135 ETLPDCLEVTSWTEEGE---IMAIRHKTLPIEGVQFHPESIM 173 (195)
T ss_pred ccCCCCeEEEEEcCCCc---EEEEEECCCCEEEEEECCCCCC
Confidence 36899999999998888 9999999999999999999963
No 24
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=99.06 E-value=3.5e-10 Score=82.61 Aligned_cols=39 Identities=26% Similarity=0.510 Sum_probs=34.9
Q ss_pred CCCCCCcEEEEEec-CCCCeeEEEEEeCCCcEEEEeecCCCCc
Q psy12876 4 YGLTETWNILTLSK-YKSWEFVSTVEHKEYPIVGIQFHPEKNA 45 (115)
Q Consensus 4 ~~L~~~f~v~a~s~-d~~~~fv~aie~~~~pi~gvQfHPE~~~ 45 (115)
..||++++++|++. |+. ++|+++++.|++|||||||+..
T Consensus 126 ~~lp~~~~v~a~s~~~~~---i~a~~~~~~~i~GvQfHPE~~~ 165 (178)
T cd01744 126 DSLPGGLEVTHVNLNDGT---VEGIRHKDLPVFSVQFHPEASP 165 (178)
T ss_pred cccCCceEEEEEECCCCc---EEEEEECCCCeEEEeeCCCCCC
Confidence 46899999999985 777 9999999999999999999963
No 25
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=99.06 E-value=2.9e-10 Score=83.03 Aligned_cols=42 Identities=24% Similarity=0.419 Sum_probs=35.8
Q ss_pred CCCC--cEEEEEecCCCCeeEEEEEeCCCcEEEEeecCCCCcccccc
Q psy12876 6 LTET--WNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNAYEWTE 50 (115)
Q Consensus 6 L~~~--f~v~a~s~d~~~~fv~aie~~~~pi~gvQfHPE~~~~e~~~ 50 (115)
++.+ ++++|.++++. |+|++++++|+||+|||||+..++||.
T Consensus 134 ~~~~~~~~~la~~~~~~---v~a~~~~~~~i~gvQfHPE~~~~~~g~ 177 (184)
T cd01743 134 DPLPDLLEVTASTEDGV---IMALRHRDLPIYGVQFHPESILTEYGL 177 (184)
T ss_pred CCCCceEEEEEeCCCCe---EEEEEeCCCCEEEEeeCCCcCCCcchH
Confidence 4444 88999988776 999999999999999999998887754
No 26
>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed
Probab=99.04 E-value=8.9e-10 Score=89.11 Aligned_cols=56 Identities=27% Similarity=0.501 Sum_probs=45.2
Q ss_pred CCCC-CcEEEEEec-CCCCeeEEEEEeCCCcEEEEeecCCCCccccccCCCCCCCHhHHHHHHHHHHHHHHHHHh
Q psy12876 5 GLTE-TWNILTLSK-YKSWEFVSTVEHKEYPIVGIQFHPEKNAYEWTESQHNPHSHDDIISARFFSDWFIDKARL 77 (115)
Q Consensus 5 ~L~~-~f~v~a~s~-d~~~~fv~aie~~~~pi~gvQfHPE~~~~e~~~~~~~~hs~~~~~~~q~l~~fFv~~ar~ 77 (115)
.|+. ++++++.+. |+. |+|++++++|++|||||||+.+. +|+ ++.|++-|++.|++
T Consensus 295 sl~~~~l~v~a~~~~Dg~---Veai~~~~~pi~gVQfHPE~~~g--------p~d------~~~lF~~F~~~~~~ 352 (354)
T PRK12838 295 SLDGTPLSVRFFNVNDGS---IEGLRHKKKPVLSVQFHPEAHPG--------PHD------AEYIFDEFLEMMEK 352 (354)
T ss_pred ccCCCCcEEEEEECCCCe---EEEEEECCCCEEEEEeCCCCCCC--------Ccc------HHHHHHHHHHHHHh
Confidence 4553 589999875 787 99999999999999999999643 244 46689999998864
No 27
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=98.96 E-value=1.5e-09 Score=78.64 Aligned_cols=39 Identities=31% Similarity=0.523 Sum_probs=35.1
Q ss_pred CCCCCCcEEEEEecCCCCeeEEEEEeCCCcEEEEeecCCCCc
Q psy12876 4 YGLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNA 45 (115)
Q Consensus 4 ~~L~~~f~v~a~s~d~~~~fv~aie~~~~pi~gvQfHPE~~~ 45 (115)
.+||++++++|++.++. ++++++++.|++|+|||||+..
T Consensus 131 ~~l~~~~~~la~~~~~~---i~a~~~~~~~~~g~QfHPE~~~ 169 (181)
T cd01742 131 VKLPEGFKVIASSDNCP---VAAIANEEKKIYGVQFHPEVTH 169 (181)
T ss_pred hhcCCCcEEEEeCCCCC---EEEEEeCCCcEEEEEcCCcccc
Confidence 36889999999998877 9999999889999999999963
No 28
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=98.93 E-value=3.2e-09 Score=89.59 Aligned_cols=55 Identities=29% Similarity=0.448 Sum_probs=44.0
Q ss_pred CCCCCCcEEEEEecCCCCeeEEEEEeCCCcEEEEeecCCCCccccccCCCCCCCHhHHHHHHHHHHHHHHHHH
Q psy12876 4 YGLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNAYEWTESQHNPHSHDDIISARFFSDWFIDKAR 76 (115)
Q Consensus 4 ~~L~~~f~v~a~s~d~~~~fv~aie~~~~pi~gvQfHPE~~~~e~~~~~~~~hs~~~~~~~q~l~~fFv~~ar 76 (115)
..||++++++|++.|+. |+|++++++|+||||||||+. |+..|.. |++-|++.|+
T Consensus 136 ~~lp~~~~vlA~s~d~~---i~a~~~~~~pi~GvQFHPE~~-----------~t~~g~~----i~~nFl~~~~ 190 (534)
T PRK14607 136 ASLPECLEVTAKSDDGE---IMGIRHKEHPIFGVQFHPESI-----------LTEEGKR----ILKNFLNYQR 190 (534)
T ss_pred ccCCCCeEEEEEcCCCC---EEEEEECCCCEEEEEeCCCCC-----------CChhHHH----HHHHHHHHhh
Confidence 36899999999998888 999999999999999999985 4545443 4555556665
No 29
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=98.92 E-value=2.3e-09 Score=78.11 Aligned_cols=52 Identities=31% Similarity=0.636 Sum_probs=42.2
Q ss_pred CCCCcEEEEEecCC-CCeeEEEEEeCCCcEEEEeecCCCCccccccCCCCCCCHhHHHHHHHHHHHHHHH
Q psy12876 6 LTETWNILTLSKYK-SWEFVSTVEHKEYPIVGIQFHPEKNAYEWTESQHNPHSHDDIISARFFSDWFIDK 74 (115)
Q Consensus 6 L~~~f~v~a~s~d~-~~~fv~aie~~~~pi~gvQfHPE~~~~e~~~~~~~~hs~~~~~~~q~l~~fFv~~ 74 (115)
+|++++++|++.++ . ++++.+++.|++|+|||||+.. +..+. +.|.|||++.
T Consensus 140 ~p~~~~~la~s~~~~~---~~~~~~~~~~i~g~QfHPE~~~-----------~~~~~---~~l~nf~~~~ 192 (192)
T PF00117_consen 140 LPEGFEVLASSSDGCP---IQAIRHKDNPIYGVQFHPEFSS-----------SPGGP---QLLKNFFLKA 192 (192)
T ss_dssp HHTTEEEEEEETTTTE---EEEEEECTTSEEEESSBTTSTT-----------STTHH---HHHHHHHHHH
T ss_pred cccccccccccccccc---cccccccccEEEEEecCCcCCC-----------CCCcc---hhhhheeEeC
Confidence 78899999999754 6 8999999989999999999963 33343 4499999863
No 30
>PLN02889 oxo-acid-lyase/anthranilate synthase
Probab=98.90 E-value=2.9e-09 Score=94.61 Aligned_cols=41 Identities=24% Similarity=0.304 Sum_probs=31.8
Q ss_pred eEEEEEeCCCcEEEEeecCCCCccccccCCCCCCCHhHHHHHHHHHHHHHHHHHhC
Q psy12876 23 FVSTVEHKEYPIVGIQFHPEKNAYEWTESQHNPHSHDDIISARFFSDWFIDKARLN 78 (115)
Q Consensus 23 fv~aie~~~~pi~gvQfHPE~~~~e~~~~~~~~hs~~~~~~~q~l~~fFv~~ar~~ 78 (115)
.|||++|+.+|+||||||||+.+++. |. .|++-|+++|+..
T Consensus 298 viMairH~~~P~~GVQfHPESi~t~~-----------G~----~l~~nF~~~~~~~ 338 (918)
T PLN02889 298 ILMGIMHSTRPHYGLQFHPESIATCY-----------GR----QIFKNFREITQDY 338 (918)
T ss_pred eeEEEEECCCceEEEEeCCccccCch-----------hH----HHHHHHHHHHHHH
Confidence 59999999999999999999986543 32 3556666788754
No 31
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=98.90 E-value=8.8e-09 Score=87.08 Aligned_cols=55 Identities=20% Similarity=0.203 Sum_probs=43.2
Q ss_pred CCCCCCcEEEEEecCCCCeeEEEEEeCCCcEEEEeecCCCCccccccCCCCCCCHhHHHHHHHHHHHHHHHHHh
Q psy12876 4 YGLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNAYEWTESQHNPHSHDDIISARFFSDWFIDKARL 77 (115)
Q Consensus 4 ~~L~~~f~v~a~s~d~~~~fv~aie~~~~pi~gvQfHPE~~~~e~~~~~~~~hs~~~~~~~q~l~~fFv~~ar~ 77 (115)
..||++++++|.+ |+. ++++++++.|+||||||||+. ||+.|.++ |.|| ++.|.+
T Consensus 138 ~~lP~~l~vlA~s-d~~---v~ai~~~~~~i~GVQFHPEs~-----------~T~~G~~i---l~NF-l~~~~~ 192 (531)
T PRK09522 138 SNIPAGLTINAHF-NGM---VMAVRHDADRVCGFQFHPESI-----------LTTQGARL---LEQT-LAWAQQ 192 (531)
T ss_pred ccCCCCcEEEEec-CCC---EEEEEECCCCEEEEEecCccc-----------cCcchHHH---HHHH-HHHHhh
Confidence 4689999999974 677 999999999999999999997 55556543 6665 455543
No 32
>PRK06186 hypothetical protein; Validated
Probab=98.88 E-value=4.5e-09 Score=80.67 Aligned_cols=54 Identities=24% Similarity=0.308 Sum_probs=42.6
Q ss_pred CCCcEEEEEecCCCCeeEEEEEeCCCc-EEEEeecCCCCccccccCCCCCCCHhHHHHHHHHHHHHHHHHHh
Q psy12876 7 TETWNILTLSKYKSWEFVSTVEHKEYP-IVGIQFHPEKNAYEWTESQHNPHSHDDIISARFFSDWFIDKARL 77 (115)
Q Consensus 7 ~~~f~v~a~s~d~~~~fv~aie~~~~p-i~gvQfHPE~~~~e~~~~~~~~hs~~~~~~~q~l~~fFv~~ar~ 77 (115)
+.+++++|+++||. |+++|.++.| +.|||||||.....- .+ +.||..|++.|+.
T Consensus 174 ~~GL~vsa~s~DG~---iEaiE~~~hpf~lGVQwHPE~~s~~~-----~~---------~~LF~~Fv~aa~~ 228 (229)
T PRK06186 174 SGDLRVTGWDEDGD---VRAVELPGHPFFVATLFQPERAALAG-----RP---------PPLVRAFLRAARA 228 (229)
T ss_pred cCCeEEEEEcCCCC---EEEEEeCCCCcEEEEeCCCCccCCCC-----CC---------CHHHHHHHHHHhc
Confidence 67899999999988 9999999988 469999999853210 11 2399999998863
No 33
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=98.87 E-value=4.5e-09 Score=84.93 Aligned_cols=57 Identities=30% Similarity=0.554 Sum_probs=48.3
Q ss_pred CCCCcEEEEEec-CCCCeeEEEEEeCCCcEEEEeecCCCCccccccCCCCCCCHhHHHHHHHHHHHHHHHHHhCC
Q psy12876 6 LTETWNILTLSK-YKSWEFVSTVEHKEYPIVGIQFHPEKNAYEWTESQHNPHSHDDIISARFFSDWFIDKARLNN 79 (115)
Q Consensus 6 L~~~f~v~a~s~-d~~~~fv~aie~~~~pi~gvQfHPE~~~~e~~~~~~~~hs~~~~~~~q~l~~fFv~~ar~~~ 79 (115)
+++..+++.++. |+. +++++|+++|++.||||||..+. ||+ +.+||+-|++.++...
T Consensus 309 ~~~~~~vth~nlnDgT---vEGi~h~~~P~fSVQ~HPEAsPG--------PhD------t~ylFd~Fi~~~~~~~ 366 (368)
T COG0505 309 LVETLKVTHVNLNDGT---VEGIRHKDLPAFSVQYHPEASPG--------PHD------TRYLFDEFIELMEAAK 366 (368)
T ss_pred cCCCceeEEEeCCCCC---ccceecCCCceEEEccCCCCCCC--------Ccc------cHHHHHHHHHHHHHhh
Confidence 444347888887 888 99999999999999999999877 476 6889999999997654
No 34
>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.
Probab=98.85 E-value=2.3e-09 Score=80.93 Aligned_cols=36 Identities=36% Similarity=0.612 Sum_probs=29.6
Q ss_pred CCCCCCcEEEEEecCCCCeeEEEEEeCC--CcEEEEeecCC
Q psy12876 4 YGLTETWNILTLSKYKSWEFVSTVEHKE--YPIVGIQFHPE 42 (115)
Q Consensus 4 ~~L~~~f~v~a~s~d~~~~fv~aie~~~--~pi~gvQfHPE 42 (115)
+.|+++|+++|++.|+. |+++|..+ +|++|||||||
T Consensus 180 ~~l~~~l~v~A~s~Dg~---iEaie~~~~~~~~~GvQwHPE 217 (217)
T PF07722_consen 180 KPLGEGLRVTARSPDGV---IEAIESPEHKYPILGVQWHPE 217 (217)
T ss_dssp CCHHCCEEEEEEECTSS---EEEEEECCESS-EEEESS-CC
T ss_pred hccCCCceEEEEecCCc---EEEEEEcCCCCCEEEEEeCCC
Confidence 35788999999999999 78887776 57999999999
No 35
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=98.83 E-value=1.3e-08 Score=88.71 Aligned_cols=60 Identities=18% Similarity=0.201 Sum_probs=46.9
Q ss_pred CCCCCCcEEEEEecCCCCeeEEEEEeCCCcEEEEeecCCCCccccccCCCCCCCHhHHHHHHHHHHHHHHHHHh
Q psy12876 4 YGLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNAYEWTESQHNPHSHDDIISARFFSDWFIDKARL 77 (115)
Q Consensus 4 ~~L~~~f~v~a~s~d~~~~fv~aie~~~~pi~gvQfHPE~~~~e~~~~~~~~hs~~~~~~~q~l~~fFv~~ar~ 77 (115)
..||++++++|++.++. ++|+++++.|++|||||||+.+++. ...|.+ .|.||+...|+.
T Consensus 652 ~~LP~~~~vlA~s~d~~---v~Ai~~~~~~i~GVQFHPEsi~T~s--------g~~G~~---ilkNfl~~~~~~ 711 (717)
T TIGR01815 652 DRLPAELTVTAESADGL---IMAIEHRRLPLAAVQFHPESIMTLD--------GGAGLA---MIGNVVDRLAAG 711 (717)
T ss_pred ccCCCCeEEEEEeCCCc---EEEEEECCCCEEEEEeCCeeCCccC--------chhHHH---HHHHHHHHHhhc
Confidence 46899999999998887 9999999999999999999975432 123444 478877777644
No 36
>PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing)
Probab=98.81 E-value=6.6e-09 Score=85.62 Aligned_cols=40 Identities=18% Similarity=0.280 Sum_probs=36.4
Q ss_pred CCCCCCcEEEEEec-CCCCeeEEEEEeCCCcEEEEeecCCCCcc
Q psy12876 4 YGLTETWNILTLSK-YKSWEFVSTVEHKEYPIVGIQFHPEKNAY 46 (115)
Q Consensus 4 ~~L~~~f~v~a~s~-d~~~~fv~aie~~~~pi~gvQfHPE~~~~ 46 (115)
..||+++++++.+. |+. |+|++++++|++|||||||+.+.
T Consensus 367 ~sLp~~~~vt~~nlnDgt---vegi~~~~~pi~gVQFHPEa~pg 407 (415)
T PLN02771 367 ASLPEGVEVTHVNLNDGS---CAGLAFPALNVMSLQYHPEASPG 407 (415)
T ss_pred ccCCCceEEEEEeCCCCc---EEEEEECCCCEEEEEcCCCCCCC
Confidence 57899999999985 888 99999999999999999999765
No 37
>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th
Probab=98.77 E-value=1e-08 Score=78.61 Aligned_cols=37 Identities=27% Similarity=0.299 Sum_probs=32.8
Q ss_pred CCCCcEEEEEec-CCCCeeEEEEEeCCCcEE-EEeecCCCCc
Q psy12876 6 LTETWNILTLSK-YKSWEFVSTVEHKEYPIV-GIQFHPEKNA 45 (115)
Q Consensus 6 L~~~f~v~a~s~-d~~~~fv~aie~~~~pi~-gvQfHPE~~~ 45 (115)
++++++++|++. |+. |+|+|++++|++ |||||||...
T Consensus 184 ~~~~l~v~a~~~ddg~---ieaie~~~~pf~lgvQ~HPE~~~ 222 (235)
T cd01746 184 EEAGLRFSGTDPDGGL---VEIVELPDHPFFVGTQFHPEFKS 222 (235)
T ss_pred hhCCeEEEEEeCCCCe---EEEEEcCCCCcEEEEECCCCCcC
Confidence 378899999998 677 999999999987 9999999863
No 38
>PRK13566 anthranilate synthase; Provisional
Probab=98.77 E-value=1.9e-08 Score=87.67 Aligned_cols=40 Identities=25% Similarity=0.424 Sum_probs=36.2
Q ss_pred CCCCCCcEEEEEecCCCCeeEEEEEeCCCcEEEEeecCCCCcc
Q psy12876 4 YGLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNAY 46 (115)
Q Consensus 4 ~~L~~~f~v~a~s~d~~~~fv~aie~~~~pi~gvQfHPE~~~~ 46 (115)
..||++++++|.++|+. |+++++++.|++|||||||+.++
T Consensus 662 ~~Lp~~~~vlA~s~dg~---V~ai~~~~~pi~GVQFHPE~i~t 701 (720)
T PRK13566 662 ETLPDELLVTAETEDGV---IMAIEHKTLPVAAVQFHPESIMT 701 (720)
T ss_pred ccCCCceEEEEEeCCCc---EEEEEECCCCEEEEeccCeeCCc
Confidence 35899999999998887 99999999999999999999754
No 39
>KOG1622|consensus
Probab=98.75 E-value=6.4e-09 Score=86.38 Aligned_cols=76 Identities=18% Similarity=0.336 Sum_probs=63.9
Q ss_pred CCCCCCcEEEEEecCCCCeeEEEEEeCCCcEEEEeecCCCCccccccCCCCCCCHhHHHHHHHHHHHHHHHHHhCC-CCC
Q psy12876 4 YGLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNAYEWTESQHNPHSHDDIISARFFSDWFIDKARLNN-NSF 82 (115)
Q Consensus 4 ~~L~~~f~v~a~s~d~~~~fv~aie~~~~pi~gvQfHPE~~~~e~~~~~~~~hs~~~~~~~q~l~~fFv~~ar~~~-~~f 82 (115)
.+++++|++.|.+.... ++++.+..+++||+|||||+. ||..|.++ +.||++++|.+.. -+.
T Consensus 151 ~~v~~g~kv~a~s~n~~---va~i~~e~kkiyglqfhpEV~-----------~t~~g~~l---l~nFl~~vc~~~~n~tm 213 (552)
T KOG1622|consen 151 SKVPEGFKVVAFSGNKP---VAGILNELKKIYGLQFHPEVT-----------LTPNGKEL---LKNFLFDVCGCSGNFTM 213 (552)
T ss_pred hhccccceeEEeecCcc---eeeehhhhhhhhcCCCCCccc-----------ccCchhHH---HHHHHHHHcCCccCcch
Confidence 46899999999998887 899999999999999999994 77888755 9999999999877 467
Q ss_pred CCHHHHHhhccccc
Q psy12876 83 ASRDDLYKSLIQNY 96 (115)
Q Consensus 83 ~~~~~~~~~li~n~ 96 (115)
.+++++....|+.+
T Consensus 214 enre~e~I~~i~k~ 227 (552)
T KOG1622|consen 214 ENREEECINEIRKW 227 (552)
T ss_pred hhhhHHHHHHHHHH
Confidence 77777776666654
No 40
>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=98.75 E-value=2.1e-08 Score=74.04 Aligned_cols=38 Identities=21% Similarity=0.341 Sum_probs=34.3
Q ss_pred CCCCCcEEEEEecCCCCeeEEEEEeCC-CcEEEEeecCCCCc
Q psy12876 5 GLTETWNILTLSKYKSWEFVSTVEHKE-YPIVGIQFHPEKNA 45 (115)
Q Consensus 5 ~L~~~f~v~a~s~d~~~~fv~aie~~~-~pi~gvQfHPE~~~ 45 (115)
.||++++++|++.|+. |+++++++ .+++|+|||||...
T Consensus 137 ~~~~~~~vla~~~d~~---vea~~~~~~~~~~gvQfHPE~~~ 175 (189)
T cd01745 137 RLADGLRVEARAPDGV---IEAIESPDRPFVLGVQWHPEWLA 175 (189)
T ss_pred hcCCCCEEEEECCCCc---EEEEEeCCCCeEEEEecCCCcCc
Confidence 5789999999988888 99999987 78999999999964
No 41
>KOG0026|consensus
Probab=98.72 E-value=1.1e-08 Score=75.88 Aligned_cols=44 Identities=25% Similarity=0.399 Sum_probs=38.6
Q ss_pred cCCCC-CCcEEEEEecCCCCeeEEEEEeCCCc-EEEEeecCCCCccccc
Q psy12876 3 KYGLT-ETWNILTLSKYKSWEFVSTVEHKEYP-IVGIQFHPEKNAYEWT 49 (115)
Q Consensus 3 ~~~L~-~~f~v~a~s~d~~~~fv~aie~~~~p-i~gvQfHPE~~~~e~~ 49 (115)
...|| +.++|+|+++||. ||+.+|++|. |-|||||||+..++.|
T Consensus 158 ~sSlP~d~L~VTawTEnG~---iMgaRHkKY~~ieGVQfHPESIlteeG 203 (223)
T KOG0026|consen 158 KDSFPSDELEVTAWTEDGL---VMAARHRKYKHIQGVQFHPESIITTEG 203 (223)
T ss_pred cccCCccceeeeEeccCcE---EEeeeccccccccceeecchhhhhhhh
Confidence 35678 7899999999999 9999999998 8999999999876543
No 42
>PRK05380 pyrG CTP synthetase; Validated
Probab=98.68 E-value=4.8e-08 Score=82.64 Aligned_cols=54 Identities=26% Similarity=0.241 Sum_probs=42.2
Q ss_pred CCcEEEEEecCC-CCeeEEEEEeCCCcEE-EEeecCCCCccccccCCCCCCCHhHHHHHHHHHHHHHHHHHhC
Q psy12876 8 ETWNILTLSKYK-SWEFVSTVEHKEYPIV-GIQFHPEKNAYEWTESQHNPHSHDDIISARFFSDWFIDKARLN 78 (115)
Q Consensus 8 ~~f~v~a~s~d~-~~~fv~aie~~~~pi~-gvQfHPE~~~~e~~~~~~~~hs~~~~~~~q~l~~fFv~~ar~~ 78 (115)
.+++++|++.|+ . |+++|.+++|++ |||||||....+ .. ...||..|++.|++.
T Consensus 474 ~GL~vsa~s~Dggl---VEaIEl~~hpfflGVQwHPE~~s~p--------~~------~~pLF~~FV~Aa~~~ 529 (533)
T PRK05380 474 AGLVFSGTSPDGRL---VEIVELPDHPWFVGVQFHPEFKSRP--------RR------PHPLFAGFVKAALEN 529 (533)
T ss_pred cCeEEEEEcCCCCc---EEEEEeCCCCEEEEEeCCCCCCCCC--------Cc------hHHHHHHHHHHHHHH
Confidence 479999999765 6 999999999975 999999985321 11 234899999999764
No 43
>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=98.67 E-value=2.6e-08 Score=74.75 Aligned_cols=56 Identities=20% Similarity=0.189 Sum_probs=44.4
Q ss_pred cCCCCCCcEEEEEecCCCCeeEEEEEeCCCcEEEEeecCCCCccccccCCCCCCCHhHHHHHHHHHHHHHHHHHh
Q psy12876 3 KYGLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNAYEWTESQHNPHSHDDIISARFFSDWFIDKARL 77 (115)
Q Consensus 3 ~~~L~~~f~v~a~s~d~~~~fv~aie~~~~pi~gvQfHPE~~~~e~~~~~~~~hs~~~~~~~q~l~~fFv~~ar~ 77 (115)
..+||++++++|+|+.+. +++++.. .++||+|||||.. | +.+. +.+.||-.++|..
T Consensus 141 v~~lP~g~~vlA~s~~cp---~qa~~~~-~~~~gvQFHpEv~-----------~-~~~~---~~l~nf~~~i~~~ 196 (198)
T COG0518 141 VVELPEGAVVLASSETCP---NQAFRYG-KRAYGVQFHPEVT-----------H-EYGE---ALLENFAHEICGE 196 (198)
T ss_pred cccCCCCCEEEecCCCCh---hhheecC-CcEEEEeeeeEEe-----------H-HHHH---HHHHHhhhhhccc
Confidence 457999999999998888 8999998 8899999999984 4 3343 3466666677754
No 44
>PLN02327 CTP synthase
Probab=98.56 E-value=1.3e-07 Score=80.29 Aligned_cols=57 Identities=19% Similarity=0.156 Sum_probs=44.1
Q ss_pred CCCcEEEEEecCCCCeeEEEEEeCCCcEE-EEeecCCCCccccccCCCCCCCHhHHHHHHHHHHHHHHHHHhCC
Q psy12876 7 TETWNILTLSKYKSWEFVSTVEHKEYPIV-GIQFHPEKNAYEWTESQHNPHSHDDIISARFFSDWFIDKARLNN 79 (115)
Q Consensus 7 ~~~f~v~a~s~d~~~~fv~aie~~~~pi~-gvQfHPE~~~~e~~~~~~~~hs~~~~~~~q~l~~fFv~~ar~~~ 79 (115)
..+++++|++.|++ .|+++|++++|++ |||||||....+ .. .+.||..|++.|.++.
T Consensus 493 ~~gL~vsa~s~dg~--~IEaiE~~~~pffvGVQfHPE~~s~p--------~~------~~pLF~~Fv~Aa~~~~ 550 (557)
T PLN02327 493 KAGLSFVGKDETGR--RMEIVELPSHPFFVGVQFHPEFKSRP--------GK------PSPLFLGLIAAASGQL 550 (557)
T ss_pred hcCcEEEEEcCCCC--EEEEEEeCCCCEEEEEEcCCCCCCCC--------CC------chHHHHHHHHHHHHhH
Confidence 47899999998663 2999999999987 999999986322 11 1349999999997644
No 45
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=98.53 E-value=1.7e-07 Score=79.26 Aligned_cols=35 Identities=26% Similarity=0.304 Sum_probs=30.9
Q ss_pred CCcEEEEEecCC-CCeeEEEEEeCCCcEE-EEeecCCCCc
Q psy12876 8 ETWNILTLSKYK-SWEFVSTVEHKEYPIV-GIQFHPEKNA 45 (115)
Q Consensus 8 ~~f~v~a~s~d~-~~~fv~aie~~~~pi~-gvQfHPE~~~ 45 (115)
++++++|++.|+ . |+|+|.+++|++ |||||||...
T Consensus 474 ~GL~vsa~s~Dgg~---VEaIE~~~hpfflGVQwHPE~~s 510 (525)
T TIGR00337 474 KGLIVSGTSPDGRL---VEIIELPDHPFFVACQFHPEFTS 510 (525)
T ss_pred CCeEEEEEECCCCE---EEEEEECCCCeEEEEecCCCCCC
Confidence 689999999874 6 999999999976 9999999863
No 46
>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade. This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.
Probab=98.50 E-value=3.7e-07 Score=79.92 Aligned_cols=53 Identities=26% Similarity=0.323 Sum_probs=36.3
Q ss_pred EEEEEecCCCCeeEEEEEeCCCcEEEEeecCCCCccccccCCCCCCCHhHHHHHHHHHHHHHHHHHhCC
Q psy12876 11 NILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNAYEWTESQHNPHSHDDIISARFFSDWFIDKARLNN 79 (115)
Q Consensus 11 ~v~a~s~d~~~~fv~aie~~~~pi~gvQfHPE~~~~e~~~~~~~~hs~~~~~~~q~l~~fFv~~ar~~~ 79 (115)
.+++.+.++ ..+||+++++.|+||||||||+..++ .+ +..|++-|++.|.+.+
T Consensus 156 ~~~a~~~~~--~~i~ai~h~~~pi~GVQFHPE~~~s~-----------~g---~~~Lf~nFl~~~~~~~ 208 (742)
T TIGR01823 156 LCLTEDEEG--IILMSAQTKKKPWFGVQYHPESCCSE-----------LG---SGKLVSNFLKLAFINN 208 (742)
T ss_pred EEEEEcCCC--CeEEEEEEcCCceEEEEeCcccCCCC-----------cc---HHHHHHHHHHHHHHhh
Confidence 444444432 23999999999999999999996432 22 1336666778887654
No 47
>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=98.49 E-value=4.7e-07 Score=67.25 Aligned_cols=52 Identities=19% Similarity=0.294 Sum_probs=34.2
Q ss_pred CCCCcEEEEEecCCCCeeEEEEEeCCCcEEEEeecCCCCccccccCCCCCCCHhHHHHHHHHHHHHHHHHH
Q psy12876 6 LTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNAYEWTESQHNPHSHDDIISARFFSDWFIDKAR 76 (115)
Q Consensus 6 L~~~f~v~a~s~d~~~~fv~aie~~~~pi~gvQfHPE~~~~e~~~~~~~~hs~~~~~~~q~l~~fFv~~ar 76 (115)
+++++.++|.++++ .+ ++++.. +.+++|||||||+. +..+. .|+.-|+++|+
T Consensus 152 ~~~~~~v~a~~~~~-~~-~~a~~~-~~~i~GvQfHPE~~------------~~~g~----~l~~~fl~~~~ 203 (205)
T PRK13141 152 PCDEEYVAATTDYG-VE-FPAAVG-KDNVFGAQFHPEKS------------GDVGL----KILKNFVEMVE 203 (205)
T ss_pred cCCcCeEEEEEeCC-cE-EEEEEe-cCCEEEEeCCCccc------------hHHHH----HHHHHHHHHhh
Confidence 45678888888655 22 555544 45899999999984 12333 35555678884
No 48
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=98.43 E-value=9.3e-07 Score=65.73 Aligned_cols=36 Identities=31% Similarity=0.493 Sum_probs=24.9
Q ss_pred CCCCcEEEEEecCCCCeeEEEEEeCCCcEEEEeecCCCC
Q psy12876 6 LTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKN 44 (115)
Q Consensus 6 L~~~f~v~a~s~d~~~~fv~aie~~~~pi~gvQfHPE~~ 44 (115)
++++..++|+++++. .++++.+ +.|++|+|||||+.
T Consensus 148 ~~~~~~~la~~~~~~-~~~~~~~--~~~~~gvQfHPE~~ 183 (200)
T PRK13143 148 PDDEDYVVATTDYGI-EFPAAVC--NDNVFGTQFHPEKS 183 (200)
T ss_pred CCCcceEEEEEcCCC-EEEEEEE--cCCEEEEeCCCccc
Confidence 445678888887543 2344444 34899999999984
No 49
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=98.36 E-value=1.2e-06 Score=64.79 Aligned_cols=49 Identities=16% Similarity=0.311 Sum_probs=36.6
Q ss_pred CCCCCCcEEEEEecCCCCeeEEEEEeCCCcEEEEeecCCCCccccccCCCCCCCHhHHHHHHHHHHHHHHHHH
Q psy12876 4 YGLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNAYEWTESQHNPHSHDDIISARFFSDWFIDKAR 76 (115)
Q Consensus 4 ~~L~~~f~v~a~s~d~~~~fv~aie~~~~pi~gvQfHPE~~~~e~~~~~~~~hs~~~~~~~q~l~~fFv~~ar 76 (115)
..||++++++|+++ +. +.+++.+ ++||+|||||... + ..|++.|++.|+
T Consensus 140 ~~lp~~~~vlA~~~-~~---~~~~~~~--~~~g~QfHPE~~~-----------~-------~~~~~~f~~~~~ 188 (189)
T PRK13525 140 EEVGPGVEVLATVG-GR---IVAVRQG--NILATSFHPELTD-----------D-------TRVHRYFLEMVK 188 (189)
T ss_pred eccCCCcEEEEEcC-CE---EEEEEeC--CEEEEEeCCccCC-----------C-------chHHHHHHHHhh
Confidence 36899999999985 34 5566643 7999999999842 1 237778888886
No 50
>PRK09065 glutamine amidotransferase; Provisional
Probab=98.32 E-value=8.8e-07 Score=67.72 Aligned_cols=37 Identities=24% Similarity=0.245 Sum_probs=32.6
Q ss_pred CCCCCCcEEEEEecCCCCeeEEEEEeCCCcEEEEeecCCCC
Q psy12876 4 YGLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKN 44 (115)
Q Consensus 4 ~~L~~~f~v~a~s~d~~~~fv~aie~~~~pi~gvQfHPE~~ 44 (115)
..||++++++|+++++. ++++++++ +++|+|||||..
T Consensus 153 ~~lp~~~~~la~s~~~~---iqa~~~~~-~i~gvQfHPE~~ 189 (237)
T PRK09065 153 LRLPPGAVVLARSAQDP---HQAFRYGP-HAWGVQFHPEFT 189 (237)
T ss_pred hhCCCCCEEEEcCCCCC---eeEEEeCC-CEEEEEeCCcCC
Confidence 35899999999998888 99999876 699999999974
No 51
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=98.30 E-value=2e-06 Score=63.51 Aligned_cols=35 Identities=34% Similarity=0.552 Sum_probs=24.4
Q ss_pred CCCcEEEEEecCCCCeeEEEEEeCCCcEEEEeecCCCC
Q psy12876 7 TETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKN 44 (115)
Q Consensus 7 ~~~f~v~a~s~d~~~~fv~aie~~~~pi~gvQfHPE~~ 44 (115)
++.+.++|+++++. ++.+ .+.+.++||+|||||+.
T Consensus 152 ~~~~~~la~s~~~~-~~~~--~~~~~~i~GvQFHPE~~ 186 (198)
T cd01748 152 DDPDYILATTDYGG-KFPA--AVEKDNIFGTQFHPEKS 186 (198)
T ss_pred CCcceEEEEecCCC-eEEE--EEEcCCEEEEECCCccc
Confidence 44567888886554 3333 34566899999999985
No 52
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=98.28 E-value=2.4e-06 Score=63.35 Aligned_cols=49 Identities=18% Similarity=0.333 Sum_probs=36.4
Q ss_pred CCCCCCcEEEEEecCCCCeeEEEEEeCCCcEEEEeecCCCCccccccCCCCCCCHhHHHHHHHHHHHHHHHHH
Q psy12876 4 YGLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNAYEWTESQHNPHSHDDIISARFFSDWFIDKAR 76 (115)
Q Consensus 4 ~~L~~~f~v~a~s~d~~~~fv~aie~~~~pi~gvQfHPE~~~~e~~~~~~~~hs~~~~~~~q~l~~fFv~~ar 76 (115)
..||++++++|+++|+. .+++. .+++|+|||||.. ++ +.|++.|++.|+
T Consensus 150 ~~lp~~~~~la~~~~~~----~a~~~--~~~~g~QfHPE~~-----------~~-------~~l~~~f~~~~~ 198 (200)
T PRK13527 150 TKVGGDVEVLAKLDDRI----VAVEQ--GNVLATAFHPELT-----------DD-------TRIHEYFLKKVK 198 (200)
T ss_pred cccCCCeEEEEEECCEE----EEEEE--CCEEEEEeCCCCC-----------CC-------CHHHHHHHHHHh
Confidence 35899999999987654 46654 4699999999974 22 237888888774
No 53
>PRK06490 glutamine amidotransferase; Provisional
Probab=98.26 E-value=1.5e-06 Score=66.67 Aligned_cols=37 Identities=22% Similarity=0.327 Sum_probs=33.0
Q ss_pred CCCCCCcEEEEEecCCCCeeEEEEEeCCCcEEEEeecCCCC
Q psy12876 4 YGLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKN 44 (115)
Q Consensus 4 ~~L~~~f~v~a~s~d~~~~fv~aie~~~~pi~gvQfHPE~~ 44 (115)
..||++.+++|+++++. +++++..+ ++||+|||||+.
T Consensus 146 ~~lP~~~~~LA~s~~~~---~qa~~~~~-~v~g~QfHPE~~ 182 (239)
T PRK06490 146 FDLPAGAELLATGDDFP---NQAFRYGD-NAWGLQFHPEVT 182 (239)
T ss_pred ccCCCCCEEEEeCCCCC---eEEEEeCC-CEEEEeeCccCC
Confidence 36899999999998888 99999865 699999999985
No 54
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=98.24 E-value=9.6e-07 Score=64.34 Aligned_cols=34 Identities=26% Similarity=0.290 Sum_probs=30.8
Q ss_pred CCCCCcEEEEEecCCCCeeEEEEEeCCCcEEEEeecCC
Q psy12876 5 GLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPE 42 (115)
Q Consensus 5 ~L~~~f~v~a~s~d~~~~fv~aie~~~~pi~gvQfHPE 42 (115)
.||++++++|+++++. +++++.+ .+++|+|||||
T Consensus 147 ~lp~~~~~la~~~~~~---v~~~~~~-~~~~g~QfHPE 180 (188)
T cd01741 147 ELPPGAVLLASSEACP---NQAFRYG-DRALGLQFHPE 180 (188)
T ss_pred hCCCCCEEeecCCCCC---cceEEec-CCEEEEccCch
Confidence 4899999999998888 9999987 68999999999
No 55
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=98.22 E-value=3.2e-06 Score=62.80 Aligned_cols=36 Identities=22% Similarity=0.469 Sum_probs=24.9
Q ss_pred CCCCcEEEEEecCCCCeeEEEEEeCCCcEEEEeecCCCC
Q psy12876 6 LTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKN 44 (115)
Q Consensus 6 L~~~f~v~a~s~d~~~~fv~aie~~~~pi~gvQfHPE~~ 44 (115)
+|.+..++|++..+ ..|++++++ .++||+|||||+.
T Consensus 147 lp~~~~~la~s~~~-~~~~~~~~~--~~i~G~QFHPE~~ 182 (196)
T PRK13170 147 MPVNEYTIAQCNYG-EPFSAAIQK--DNFFGVQFHPERS 182 (196)
T ss_pred cCCCCcEEEEecCC-CeEEEEEEc--CCEEEEECCCCCc
Confidence 44455677777643 456666554 4599999999995
No 56
>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.
Probab=98.21 E-value=3.1e-06 Score=62.52 Aligned_cols=35 Identities=23% Similarity=0.288 Sum_probs=28.2
Q ss_pred CCCCCCcEEEEEecCCCCeeEEEEEeCCCcEEEEeecCCCC
Q psy12876 4 YGLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKN 44 (115)
Q Consensus 4 ~~L~~~f~v~a~s~d~~~~fv~aie~~~~pi~gvQfHPE~~ 44 (115)
..||++++++|++++ . +.|++.. +++|+|||||+.
T Consensus 139 ~~lp~~~~vla~~~~-~---~~a~~~~--~~~gvQfHPE~~ 173 (184)
T TIGR03800 139 VSVGNGVEILAKVGN-R---IVAVRQG--NILVSSFHPELT 173 (184)
T ss_pred ccCCCCeEEEEEeCC-e---eEEEEeC--CEEEEEeCCccC
Confidence 468999999999864 4 5677644 599999999984
No 57
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=98.19 E-value=4.7e-06 Score=63.04 Aligned_cols=33 Identities=27% Similarity=0.491 Sum_probs=25.3
Q ss_pred CcEEEEEecCCCCeeEEEEEeCCCcEEEEeecCCCC
Q psy12876 9 TWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKN 44 (115)
Q Consensus 9 ~f~v~a~s~d~~~~fv~aie~~~~pi~gvQfHPE~~ 44 (115)
.-.++++++ .+.+|.++++..+ ++|+||||||+
T Consensus 156 ~~~v~~~~~-YG~~f~AaV~k~N--~~g~QFHPEKS 188 (204)
T COG0118 156 PETVVATTD-YGEPFPAAVAKDN--VFGTQFHPEKS 188 (204)
T ss_pred CceEEEecc-CCCeeEEEEEeCC--EEEEecCcccc
Confidence 344566654 5556999999876 99999999996
No 58
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=98.19 E-value=5.7e-06 Score=61.25 Aligned_cols=33 Identities=36% Similarity=0.605 Sum_probs=24.2
Q ss_pred CcEEEEEecCCCCeeEEEEEeCCCcEEEEeecCCCC
Q psy12876 9 TWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKN 44 (115)
Q Consensus 9 ~f~v~a~s~d~~~~fv~aie~~~~pi~gvQfHPE~~ 44 (115)
...++|++.+ +..|+++++. .++||+|||||+.
T Consensus 153 ~~~~lA~s~~-~~~~~~~~~~--~~i~GvQFHPE~~ 185 (199)
T PRK13181 153 PEDVLATTEY-GVPFCSAVAK--DNIYAVQFHPEKS 185 (199)
T ss_pred cccEEEEEcC-CCEEEEEEEC--CCEEEEECCCccC
Confidence 3467888765 3456777764 4699999999984
No 59
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional
Probab=98.19 E-value=4.5e-06 Score=63.03 Aligned_cols=34 Identities=29% Similarity=0.491 Sum_probs=23.5
Q ss_pred CcEEEEEecCC-CCeeEEEEEeCCCcEEEEeecCCCC
Q psy12876 9 TWNILTLSKYK-SWEFVSTVEHKEYPIVGIQFHPEKN 44 (115)
Q Consensus 9 ~f~v~a~s~d~-~~~fv~aie~~~~pi~gvQfHPE~~ 44 (115)
+...++.+... ...++++++.. +++|+|||||+.
T Consensus 161 ~~~~l~~t~~~~~~~~v~a~~~~--~i~GvQFHPE~s 195 (210)
T CHL00188 161 SQACATTTTFYGKQQMVAAIEYD--NIFAMQFHPEKS 195 (210)
T ss_pred CCceEEEEEecCCcceEEEEecC--CEEEEecCCccc
Confidence 44445444322 24579999963 799999999995
No 60
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=98.12 E-value=8.2e-06 Score=61.22 Aligned_cols=33 Identities=21% Similarity=0.431 Sum_probs=22.4
Q ss_pred CcEEEEEecCCCCeeEEEEEeCCCcEEEEeecCCCC
Q psy12876 9 TWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKN 44 (115)
Q Consensus 9 ~f~v~a~s~d~~~~fv~aie~~~~pi~gvQfHPE~~ 44 (115)
...++|++.++. + +.++. .+.++||||||||+.
T Consensus 161 ~~~~la~s~~~~-~-~~a~~-~~~~i~GvQFHPE~s 193 (209)
T PRK13146 161 PADVVAWTDYGG-P-FTAAV-ARDNLFATQFHPEKS 193 (209)
T ss_pred CCcEEEEEcCCC-E-EEEEE-ecCCEEEEEcCCccc
Confidence 457788776443 2 33443 346899999999984
No 61
>PRK07567 glutamine amidotransferase; Provisional
Probab=98.10 E-value=4.9e-06 Score=63.91 Aligned_cols=37 Identities=27% Similarity=0.278 Sum_probs=32.5
Q ss_pred CCCCCCcEEEEEecCCCCeeEEEEEeCCCcEEEEeecCCCC
Q psy12876 4 YGLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKN 44 (115)
Q Consensus 4 ~~L~~~f~v~a~s~d~~~~fv~aie~~~~pi~gvQfHPE~~ 44 (115)
..||++++++|+++++. +++++..+ +++|+|||||..
T Consensus 157 ~~lp~~~~vlA~s~~~~---vqa~~~~~-~~~gvQfHPE~~ 193 (242)
T PRK07567 157 SALPPGAVLLATSPTCP---VQMFRVGE-NVYATQFHPELD 193 (242)
T ss_pred hhCCCCCEEEEeCCCCC---EEEEEeCC-CEEEEEeCCcCC
Confidence 36899999999998888 99999865 699999999985
No 62
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I. In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.
Probab=98.01 E-value=3.1e-06 Score=64.28 Aligned_cols=41 Identities=15% Similarity=0.197 Sum_probs=31.7
Q ss_pred cCCCCeeEEEEEeCCCcEEEEeecCCCCccccccCCCCCCCHhHHHH
Q psy12876 17 KYKSWEFVSTVEHKEYPIVGIQFHPEKNAYEWTESQHNPHSHDDIIS 63 (115)
Q Consensus 17 ~d~~~~fv~aie~~~~pi~gvQfHPE~~~~e~~~~~~~~hs~~~~~~ 63 (115)
.+|....|+++.+++.+++|+|||||+...+|. ++..|.++
T Consensus 179 pngs~~~i~~i~~~~~~~~g~~~HpE~~~~~~~------~~~~g~~~ 219 (227)
T TIGR01737 179 PNGSVGNIAGIVNERGNVLGMMPHPERASEKLL------GGDDGLKL 219 (227)
T ss_pred CCCCHHHHcccCCCCCCEEEEecCchhhccccc------CCcccHHH
Confidence 344456799999999999999999999877662 45666543
No 63
>PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=98.00 E-value=1.5e-05 Score=60.13 Aligned_cols=33 Identities=39% Similarity=0.553 Sum_probs=20.4
Q ss_pred cEEEEEecCCCCeeEEEEEeCCCcEEEEeecCCCC
Q psy12876 10 WNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKN 44 (115)
Q Consensus 10 f~v~a~s~d~~~~fv~aie~~~~pi~gvQfHPE~~ 44 (115)
+.+++++..++..|.+++ .+.++||+|||||+.
T Consensus 163 l~~sa~~~~~g~~~~a~~--~~~~i~GvQFHPE~s 195 (210)
T PRK14004 163 NAITGLCDYYQEKFPAVV--EKENIFGTQFHPEKS 195 (210)
T ss_pred ceEEEeeeECCEEEEEEE--ecCCEEEEeCCcccC
Confidence 445555543232233333 466899999999996
No 64
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=97.93 E-value=2.3e-05 Score=66.01 Aligned_cols=57 Identities=25% Similarity=0.267 Sum_probs=44.4
Q ss_pred CCCcEEEEEecCCCCeeEEEEEeCCCcEE-EEeecCCCCccccccCCCCCCCHhHHHHHHHHHHHHHHHHHhCC
Q psy12876 7 TETWNILTLSKYKSWEFVSTVEHKEYPIV-GIQFHPEKNAYEWTESQHNPHSHDDIISARFFSDWFIDKARLNN 79 (115)
Q Consensus 7 ~~~f~v~a~s~d~~~~fv~aie~~~~pi~-gvQfHPE~~~~e~~~~~~~~hs~~~~~~~q~l~~fFv~~ar~~~ 79 (115)
..++++.+++.|+. .++.+|..++|+| |+|||||-...+. .||- +|.-|++.|...+
T Consensus 473 ~~Gl~~sg~s~d~~--lvEivE~~~hpfFv~~QfHPEf~SrP~-----~phP---------lf~~fv~Aa~~~~ 530 (533)
T COG0504 473 KAGLVFSGTSPDGG--LVEIVELPDHPFFVATQFHPEFKSRPL-----RPHP---------LFVGFVKAALEYK 530 (533)
T ss_pred hCCeEEEEEcCCCC--eEEEEEcCCCceEEEEcccccccCCCC-----CCCc---------cHHHHHHHHHHhh
Confidence 35799999998755 3999999999975 9999999864332 3565 8888888886654
No 65
>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=97.91 E-value=2.9e-05 Score=57.69 Aligned_cols=32 Identities=31% Similarity=0.536 Sum_probs=22.4
Q ss_pred cEEEEEecCCCCeeEEEEEeCCCcEEEEeecCCCC
Q psy12876 10 WNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKN 44 (115)
Q Consensus 10 f~v~a~s~d~~~~fv~aie~~~~pi~gvQfHPE~~ 44 (115)
..+++++.++. .++++++ +.+++|+|||||+.
T Consensus 156 ~~v~a~~~~g~-~~~~a~~--~~~i~GvQFHPE~~ 187 (201)
T PRK13152 156 EFVSAKAQYGH-KFVASLQ--KDNIFATQFHPEKS 187 (201)
T ss_pred CcEEEEECCCC-EEEEEEe--cCCEEEEeCCCeec
Confidence 34666666543 4566776 34799999999984
No 66
>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=97.90 E-value=3.4e-05 Score=57.83 Aligned_cols=31 Identities=35% Similarity=0.759 Sum_probs=22.7
Q ss_pred EEEEEecCCCCeeEEEEEeCCCcEEEEeecCCCC
Q psy12876 11 NILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKN 44 (115)
Q Consensus 11 ~v~a~s~d~~~~fv~aie~~~~pi~gvQfHPE~~ 44 (115)
.+++++.- +.+|+++++..+ ++|+|||||++
T Consensus 143 ~v~~~~~y-g~~~~~~v~~~n--~~g~QFHPEkS 173 (192)
T PRK13142 143 NVIAYAQY-GADIPAIVQFNN--YIGIQFHPEKS 173 (192)
T ss_pred CEEEEEEC-CCeEEEEEEcCC--EEEEecCcccC
Confidence 45566653 345788887655 99999999994
No 67
>PRK05665 amidotransferase; Provisional
Probab=97.89 E-value=2e-05 Score=60.56 Aligned_cols=37 Identities=19% Similarity=0.230 Sum_probs=32.2
Q ss_pred CCCCCCcEEEEEecCCCCeeEEEEEeCCCcEEEEeecCCCC
Q psy12876 4 YGLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKN 44 (115)
Q Consensus 4 ~~L~~~f~v~a~s~d~~~~fv~aie~~~~pi~gvQfHPE~~ 44 (115)
..||++++++|+|+.+. +++++..+ +++|+|||||..
T Consensus 153 ~~LP~ga~~La~s~~~~---~q~~~~~~-~~~g~QfHPE~~ 189 (240)
T PRK05665 153 TALPEGATVIASSDFCP---FAAYHIGD-QVLCFQGHPEFV 189 (240)
T ss_pred eeCCCCcEEEEeCCCCc---EEEEEeCC-CEEEEecCCcCc
Confidence 46999999999998888 99998654 699999999985
No 68
>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit. This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.
Probab=97.89 E-value=3.8e-05 Score=56.93 Aligned_cols=30 Identities=37% Similarity=0.680 Sum_probs=19.2
Q ss_pred EEEEecCCCCeeEEEEEeCCCcEEEEeecCCCC
Q psy12876 12 ILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKN 44 (115)
Q Consensus 12 v~a~s~d~~~~fv~aie~~~~pi~gvQfHPE~~ 44 (115)
+++.++++. .+.+. ....++||+|||||+.
T Consensus 153 ~~a~~~~g~-~~~~~--~~~~~i~GvQFHPE~~ 182 (196)
T TIGR01855 153 VLAYADYGE-KFPAA--VQKGNIFGTQFHPEKS 182 (196)
T ss_pred EEEEEcCCc-EEEEE--EecCCEEEEECCCccC
Confidence 455554433 33444 4455799999999984
No 69
>PRK08250 glutamine amidotransferase; Provisional
Probab=97.82 E-value=2.8e-05 Score=59.44 Aligned_cols=36 Identities=28% Similarity=0.293 Sum_probs=31.1
Q ss_pred CCCCCcEEEEEecCCCCeeEEEEEeCCCcEEEEeecCCCC
Q psy12876 5 GLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKN 44 (115)
Q Consensus 5 ~L~~~f~v~a~s~d~~~~fv~aie~~~~pi~gvQfHPE~~ 44 (115)
.||++.+++|+++.+. ++++...+ ++||+|||||..
T Consensus 148 ~lP~~a~~LA~s~~~~---~qa~~~~~-~~~g~QfHPE~~ 183 (235)
T PRK08250 148 GLTDQAKVLATSEGCP---RQIVQYSN-LVYGFQCHMEFT 183 (235)
T ss_pred cCCCCCEEEECCCCCC---ceEEEeCC-CEEEEeecCcCC
Confidence 5899999999998777 88888754 599999999974
No 70
>KOG0370|consensus
Probab=97.81 E-value=3.2e-05 Score=69.47 Aligned_cols=63 Identities=25% Similarity=0.454 Sum_probs=53.8
Q ss_pred cCCCCCCcEEEEEec-CCCCeeEEEEEeCCCcEEEEeecCCCCccccccCCCCCCCHhHHHHHHHHHHHHHHHHHhCCCC
Q psy12876 3 KYGLTETWNILTLSK-YKSWEFVSTVEHKEYPIVGIQFHPEKNAYEWTESQHNPHSHDDIISARFFSDWFIDKARLNNNS 81 (115)
Q Consensus 3 ~~~L~~~f~v~a~s~-d~~~~fv~aie~~~~pi~gvQfHPE~~~~e~~~~~~~~hs~~~~~~~q~l~~fFv~~ar~~~~~ 81 (115)
...||.+++.+-+|. |+. -++|.|..+|++.+|||||..+. ||| +.++|+-|++..++.+.+
T Consensus 296 ~~tLp~gWk~lFvN~NDgS---NEGI~Hss~P~fSvQFHPEat~G--------P~D------TeyLFDiFi~lvkk~kst 358 (1435)
T KOG0370|consen 296 PATLPAGWKPLFVNANDGS---NEGIMHSSKPFFSVQFHPEATPG--------PHD------TEYLFDVFIELVKKSKST 358 (1435)
T ss_pred cccccCCCchheeecccCC---CceEecCCCCceeeecCCcCCCC--------Ccc------hHHHHHHHHHHHHHHhcC
Confidence 457899999999997 888 89999999999999999999755 466 567999999999887765
Q ss_pred C
Q psy12876 82 F 82 (115)
Q Consensus 82 f 82 (115)
-
T Consensus 359 ~ 359 (1435)
T KOG0370|consen 359 P 359 (1435)
T ss_pred C
Confidence 4
No 71
>PRK07053 glutamine amidotransferase; Provisional
Probab=97.78 E-value=3.2e-05 Score=59.18 Aligned_cols=36 Identities=22% Similarity=0.317 Sum_probs=31.2
Q ss_pred CCCCCcEEEEEecCCCCeeEEEEEeCCCcEEEEeecCCCC
Q psy12876 5 GLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKN 44 (115)
Q Consensus 5 ~L~~~f~v~a~s~d~~~~fv~aie~~~~pi~gvQfHPE~~ 44 (115)
.||++.+++|+|+.+. +.++... .++||+|||||..
T Consensus 146 ~lP~ga~~La~s~~~~---~qaf~~g-~~~~g~QfHpE~~ 181 (234)
T PRK07053 146 DLPEGATLLASTPACR---HQAFAWG-NHVLALQFHPEAR 181 (234)
T ss_pred ecCCCCEEEEcCCCCC---eeEEEeC-CCEEEEeeCccCC
Confidence 5899999999998777 8898864 4799999999985
No 72
>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.
Probab=97.74 E-value=3.2e-05 Score=56.71 Aligned_cols=34 Identities=18% Similarity=0.291 Sum_probs=27.3
Q ss_pred CCCCCcEEEEEecCCCCeeEEEEEeCCCcEEEEeecCCCC
Q psy12876 5 GLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKN 44 (115)
Q Consensus 5 ~L~~~f~v~a~s~d~~~~fv~aie~~~~pi~gvQfHPE~~ 44 (115)
.+|++++++|.+++ . +.+++.+ +++|+|||||..
T Consensus 140 ~~p~~~~~la~~~~-~---~~a~~~~--~~~g~qfHPE~~ 173 (183)
T cd01749 140 EVGPGVEVLAEYDG-K---IVAVRQG--NVLATSFHPELT 173 (183)
T ss_pred EcCCCcEEEEecCC-E---EEEEEEC--CEEEEEcCCccC
Confidence 57899999999854 4 4577755 599999999985
No 73
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=97.67 E-value=0.00014 Score=61.89 Aligned_cols=31 Identities=35% Similarity=0.654 Sum_probs=22.2
Q ss_pred EEEEEecCCCCeeEEEEEeCCCcEEEEeecCCCC
Q psy12876 11 NILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKN 44 (115)
Q Consensus 11 ~v~a~s~d~~~~fv~aie~~~~pi~gvQfHPE~~ 44 (115)
.+++++..+ ..+++++++. +++|+|||||+.
T Consensus 165 ~v~a~~~~g-~~~IaAI~~g--nI~GVQFHPE~s 195 (538)
T PLN02617 165 WVLATCNYG-GEFIASVRKG--NVHAVQFHPEKS 195 (538)
T ss_pred EEEEEEccC-CCcEEEEEeC--CEEEEEcCCccC
Confidence 344555422 2469999975 699999999995
No 74
>KOG1224|consensus
Probab=97.63 E-value=5.9e-05 Score=64.48 Aligned_cols=65 Identities=23% Similarity=0.294 Sum_probs=43.7
Q ss_pred CCCC-CcEEEEEecCCCCeeEEEEEeCCCcEEEEeecCCCCccccccCCCCCCCHhHHHHHHHHHHHHHHHHHhCCCCCC
Q psy12876 5 GLTE-TWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNAYEWTESQHNPHSHDDIISARFFSDWFIDKARLNNNSFA 83 (115)
Q Consensus 5 ~L~~-~f~v~a~s~d~~~~fv~aie~~~~pi~gvQfHPE~~~~e~~~~~~~~hs~~~~~~~q~l~~fFv~~ar~~~~~f~ 83 (115)
.+|- -+-+++++.|+..-++|++.+++.|.||+|||||+...+.| . + |++-|.+++--++-+..
T Consensus 161 ~~pid~l~il~t~~ddng~ilMsi~~~~fPhfG~qyHPES~~s~~g-----------~---~-lfkNFl~lt~~~n~~c~ 225 (767)
T KOG1224|consen 161 SLPIDLLPILWTIYDDNGHILMSIMHSSFPHFGLQYHPESIASTYG-----------S---Q-LFKNFLDLTVNYNSRCK 225 (767)
T ss_pred CCchhhhcceeEeecCCceEEEEeeccCCCccceeeChHHhhhhhh-----------H---H-HHHHHHHhhccCccccc
Confidence 3443 34566677655556799999999999999999999755433 2 2 55555577655554444
Q ss_pred C
Q psy12876 84 S 84 (115)
Q Consensus 84 ~ 84 (115)
+
T Consensus 226 ~ 226 (767)
T KOG1224|consen 226 S 226 (767)
T ss_pred c
Confidence 4
No 75
>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex
Probab=97.11 E-value=0.0011 Score=51.51 Aligned_cols=21 Identities=24% Similarity=0.580 Sum_probs=18.1
Q ss_pred eeEEEEEeCCCcEEEEeecCCCC
Q psy12876 22 EFVSTVEHKEYPIVGIQFHPEKN 44 (115)
Q Consensus 22 ~fv~aie~~~~pi~gvQfHPE~~ 44 (115)
.|+.+++..+ ++|+|||||+.
T Consensus 181 ~~~~aV~qgn--vlatqFHPEls 201 (248)
T PLN02832 181 KVIVAVKQGN--LLATAFHPELT 201 (248)
T ss_pred ceEEEEEeCC--EEEEEccCccC
Confidence 6788888766 99999999995
No 76
>PRK05368 homoserine O-succinyltransferase; Provisional
Probab=96.82 E-value=0.0019 Score=51.55 Aligned_cols=37 Identities=24% Similarity=0.161 Sum_probs=32.1
Q ss_pred CCCCCcEEEEEecCCCCeeEEEEEeCCCcEEEEeecCCCC
Q psy12876 5 GLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKN 44 (115)
Q Consensus 5 ~L~~~f~v~a~s~d~~~~fv~aie~~~~pi~gvQfHPE~~ 44 (115)
.++++++|+|.|+..+ +.++..++..++++|+|||..
T Consensus 203 ~~~~~l~vLA~S~~~g---v~~~~~~~~r~~~vQgHPEYd 239 (302)
T PRK05368 203 RAATGLEILAESEEAG---VYLFASKDKREVFVTGHPEYD 239 (302)
T ss_pred ccCCCCEEEecCCCCC---eEEEEeCCCCEEEEECCCCCC
Confidence 3678999999998888 888888777899999999984
No 77
>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=96.73 E-value=0.0021 Score=48.66 Aligned_cols=55 Identities=13% Similarity=0.171 Sum_probs=32.7
Q ss_pred CCcEEEEEe---cCCCCeeEEEEEeCCCcEEEEeecCCCCccccccCCCCCCCHhHHHHHHHHHHHHH
Q psy12876 8 ETWNILTLS---KYKSWEFVSTVEHKEYPIVGIQFHPEKNAYEWTESQHNPHSHDDIISARFFSDWFI 72 (115)
Q Consensus 8 ~~f~v~a~s---~d~~~~fv~aie~~~~pi~gvQfHPE~~~~e~~~~~~~~hs~~~~~~~q~l~~fFv 72 (115)
+++.++..+ .++...=|+++...+..++|+|||||+....+ .|+..+.. ||.-|+
T Consensus 160 ~~~~~~~~~~~npngs~~~ia~i~~~~~~~~g~~~HPE~~~~~~------~~~~~g~~----lf~~~v 217 (219)
T PRK03619 160 NGQVVFRYCDENPNGSVNDIAGIVNEKGNVLGMMPHPERAVEPL------LGSTDGLK----LFESLL 217 (219)
T ss_pred CCcEEEEEcCCCCCCCHHHhcccCCCCCCEEEEeCCCCccccCc------cCCCcCHH----HHHHHh
Confidence 344444433 45543236677766667999999999975443 25555543 444454
No 78
>KOG0623|consensus
Probab=96.60 E-value=0.0019 Score=53.14 Aligned_cols=37 Identities=38% Similarity=0.744 Sum_probs=28.6
Q ss_pred CCC-CCcEEEEEecCCCCeeEEEEEeCCCcEEEEeecCCCC
Q psy12876 5 GLT-ETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKN 44 (115)
Q Consensus 5 ~L~-~~f~v~a~s~d~~~~fv~aie~~~~pi~gvQfHPE~~ 44 (115)
.|+ ++|++ |++.-|..+||++|...+ ++++|||||++
T Consensus 156 ~len~~wki-at~kYG~E~Fi~ai~knN--~~AtQFHPEKS 193 (541)
T KOG0623|consen 156 SLENKDWKI-ATCKYGSESFISAIRKNN--VHATQFHPEKS 193 (541)
T ss_pred CCCCCCceE-eeeccCcHHHHHHHhcCc--eeeEecccccc
Confidence 343 45774 666667788999998666 99999999995
No 79
>KOG2387|consensus
Probab=95.42 E-value=0.0073 Score=50.98 Aligned_cols=39 Identities=21% Similarity=0.342 Sum_probs=30.5
Q ss_pred CCCcEEEEEecCCCCeeEEEEEeCCCcEE-EEeecCCCCccc
Q psy12876 7 TETWNILTLSKYKSWEFVSTVEHKEYPIV-GIQFHPEKNAYE 47 (115)
Q Consensus 7 ~~~f~v~a~s~d~~~~fv~aie~~~~pi~-gvQfHPE~~~~e 47 (115)
..++.-++.+.+|.+ ++.+|-+++|+| |+|||||...-+
T Consensus 494 ~~Gl~FvGkd~~g~r--meI~El~~HP~fVg~QfHPE~~srp 533 (585)
T KOG2387|consen 494 QAGLSFVGKDVTGKR--MEIIELESHPFFVGVQFHPEFKSRP 533 (585)
T ss_pred hcCcEEEeecCCCcE--EEEEEcCCCCceeeeccCHHHhcCC
Confidence 457788888875544 888999999975 999999986444
No 80
>KOG3179|consensus
Probab=93.31 E-value=0.18 Score=38.89 Aligned_cols=79 Identities=20% Similarity=0.186 Sum_probs=50.3
Q ss_pred CCCCCcEEEEEecCCCCeeEEEEEeCCCcEEEEeecCCCCccccccCCCCCCCHhHHHHHHHHHHHHHHHHHhCCCCCCC
Q psy12876 5 GLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNAYEWTESQHNPHSHDDIISARFFSDWFIDKARLNNNSFAS 84 (115)
Q Consensus 5 ~L~~~f~v~a~s~d~~~~fv~aie~~~~pi~gvQfHPE~~~~e~~~~~~~~hs~~~~~~~q~l~~fFv~~ar~~~~~f~~ 84 (115)
.||++++++|.|+++. ++.+...+ .++++|=|||.+.--.-. -+... .-...+-..|.+.|++..-.+.+
T Consensus 160 e~PE~a~llasSe~ce---ve~fs~~~-~~l~fQGHPEyn~eil~~--ivdrv----~~~k~~~eef~~~ak~~~En~~~ 229 (245)
T KOG3179|consen 160 ELPEGAELLASSEKCE---VEMFSIED-HLLCFQGHPEYNKEILFE--IVDRV----LGTKLVEEEFAEKAKKTMENPEP 229 (245)
T ss_pred cCCchhhhhccccccc---eEEEEecc-eEEEecCCchhhHHHHHH--HHHHH----hcchhhHHHHHHHHHHhhhCCCc
Confidence 6899999999999888 88877655 488999999985110000 00000 00133556777888877766666
Q ss_pred HHHHHhhcc
Q psy12876 85 RDDLYKSLI 93 (115)
Q Consensus 85 ~~~~~~~li 93 (115)
....+..+.
T Consensus 230 d~~~~~~ic 238 (245)
T KOG3179|consen 230 DRQLAVSIC 238 (245)
T ss_pred cHHHHHHHH
Confidence 555554443
No 81
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=81.34 E-value=1.8 Score=33.76 Aligned_cols=26 Identities=19% Similarity=0.565 Sum_probs=23.3
Q ss_pred EEEEEeCCCcEEEEeecCCCCccccc
Q psy12876 24 VSTVEHKEYPIVGIQFHPEKNAYEWT 49 (115)
Q Consensus 24 v~aie~~~~pi~gvQfHPE~~~~e~~ 49 (115)
|+||-..+..++|..-|||+....|.
T Consensus 208 IAGi~~~~G~vlglMpHPEr~~~~~~ 233 (261)
T PRK01175 208 IAGITNEKGNVIGLMPHPERAFYGYQ 233 (261)
T ss_pred cceeECCCCCEEEEcCCHHHhhchhh
Confidence 88999999999999999999977773
No 82
>PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A.
Probab=80.98 E-value=3.7 Score=32.08 Aligned_cols=27 Identities=19% Similarity=0.417 Sum_probs=23.7
Q ss_pred EEEEEeCCCcEEEEeecCCCCcccccc
Q psy12876 24 VSTVEHKEYPIVGIQFHPEKNAYEWTE 50 (115)
Q Consensus 24 v~aie~~~~pi~gvQfHPE~~~~e~~~ 50 (115)
|+||-..+-.++|...|||+....|..
T Consensus 209 IAGics~~GrvlglMpHPEr~~~~~~~ 235 (259)
T PF13507_consen 209 IAGICSPDGRVLGLMPHPERAFEPWQW 235 (259)
T ss_dssp EEEEE-TTSSEEEESSBCCGTTCCCCS
T ss_pred eeEEEcCCCCEEEEcCChHHhCchhhc
Confidence 899999999999999999999888854
No 83
>PRK13526 glutamine amidotransferase subunit PdxT; Provisional
Probab=76.48 E-value=5.8 Score=29.46 Aligned_cols=34 Identities=24% Similarity=0.307 Sum_probs=25.2
Q ss_pred CCCCCcEEEEEecCCCCeeEEEEEeCCCcEEEEeecCCCC
Q psy12876 5 GLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKN 44 (115)
Q Consensus 5 ~L~~~f~v~a~s~d~~~~fv~aie~~~~pi~gvQfHPE~~ 44 (115)
+++++.+|+|+-. +. +-+++-.+ +.|.=||||-.
T Consensus 134 ~~~~~v~vla~~~-~~---~v~v~q~~--~l~~~FHPElt 167 (179)
T PRK13526 134 VVGNQVDILSKYQ-NS---PVLLRQAN--ILVSSFHPELT 167 (179)
T ss_pred EcCCCcEEEEEEC-CE---EEEEEECC--EEEEEeCCccC
Confidence 4567889998874 33 55666555 99999999973
No 84
>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase. Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site
Probab=75.20 E-value=2.1 Score=32.61 Aligned_cols=26 Identities=19% Similarity=0.556 Sum_probs=23.5
Q ss_pred EEEEEeCCCcEEEEeecCCCCccccc
Q psy12876 24 VSTVEHKEYPIVGIQFHPEKNAYEWT 49 (115)
Q Consensus 24 v~aie~~~~pi~gvQfHPE~~~~e~~ 49 (115)
|+||-..+..++|...|||+....|.
T Consensus 195 iAgi~~~~GrvlglMphPer~~~~~q 220 (238)
T cd01740 195 IAGICNEDGRVLGMMPHPERAVEPWQ 220 (238)
T ss_pred ceEEEcCCCCEEEEcCChHHcccccc
Confidence 89999999999999999999987764
No 85
>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]
Probab=73.35 E-value=16 Score=27.63 Aligned_cols=32 Identities=22% Similarity=0.360 Sum_probs=21.6
Q ss_pred CCCcEEEEEecCCCCeeEEEEEeCCCcEEEEeecCCCC
Q psy12876 7 TETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKN 44 (115)
Q Consensus 7 ~~~f~v~a~s~d~~~~fv~aie~~~~pi~gvQfHPE~~ 44 (115)
.+..+++|+-++ . +-+++-. ++.|.-||||-.
T Consensus 146 g~~V~vLa~l~~-~---iVav~qg--n~LatsFHPELT 177 (194)
T COG0311 146 GDGVEVLATLDG-R---IVAVKQG--NILATSFHPELT 177 (194)
T ss_pred cCcceEeeeeCC-E---EEEEEeC--CEEEEecCcccc
Confidence 345777776643 3 4455544 699999999974
No 86
>PF01174 SNO: SNO glutamine amidotransferase family; InterPro: IPR002161 Members of this family are involved in the pyridoxine biosynthetic pathway [, ]. The regulation of cellular growth and proliferation in response to environmental cues is critical for development and the maintenance of viability in all organisms. In unicellular organisms, such as the budding yeast Saccharomyces cerevisiae (Baker's yeast), growth and proliferation are regulated by nutrient availability. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes PdxT, the glutaminase subunit of the PLP synthase. It is involved in the hydrolysis of glutamine to glutamate and ammonia, channeling an ammonia molecule to PdxS. ; PDB: 2ISS_D 4ADS_J 2ABW_B 2YWD_A 2NV0_A 2NV2_N 1R9G_A 1Q7R_A 2YWJ_A.
Probab=72.77 E-value=9.6 Score=28.68 Aligned_cols=31 Identities=26% Similarity=0.402 Sum_probs=20.8
Q ss_pred CCcEEEEEecCCCCeeEEEEEeCCCcEEEEeecCCCC
Q psy12876 8 ETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKN 44 (115)
Q Consensus 8 ~~f~v~a~s~d~~~~fv~aie~~~~pi~gvQfHPE~~ 44 (115)
++.+++|... +. |-+++-. ++.|.=||||-.
T Consensus 142 ~~v~vla~~~-g~---iVav~qg--n~latsFHPELT 172 (188)
T PF01174_consen 142 EGVEVLAELD-GK---IVAVRQG--NILATSFHPELT 172 (188)
T ss_dssp TTEEEEEEET-TE---EEEEEET--TEEEESS-GGGS
T ss_pred cccccccccc-cc---eEEEEec--CEEEEEeCCccc
Confidence 5677777765 33 5566644 599999999974
No 87
>PF04204 HTS: Homoserine O-succinyltransferase ; InterPro: IPR005697 This family of enzymes, homoserine O-succinyltransferase, catalyses the first step in the biosynthesis of methionine: Succinyl-CoA + L-homoserine = CoA + O-succinyl-L-homoserine This enzyme is consequently essential for the survival of bacteria, plants and fungi. Since they are not found in humans, they make a promising new target for antimicrobial drug development. Homoserine O-succinyltransferase (HST) is a representative from this class and has recently had the key amino acids involved in substrate specificity and catalysis elucidated [].; GO: 0016746 transferase activity, transferring acyl groups, 0019281 L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine, 0005737 cytoplasm; PDB: 2H2W_A 2GHR_A 2VDJ_A.
Probab=63.18 E-value=15 Score=29.48 Aligned_cols=35 Identities=29% Similarity=0.199 Sum_probs=25.5
Q ss_pred CCCcEEEEEecCCCCeeEEEEEeCCCcEEEEeecCCCC
Q psy12876 7 TETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKN 44 (115)
Q Consensus 7 ~~~f~v~a~s~d~~~~fv~aie~~~~pi~gvQfHPE~~ 44 (115)
..+++|+|.+++.| +..+..++....=+|-|||..
T Consensus 204 ~~~L~vLa~s~~~G---~~l~~~~d~r~vfi~GH~EYd 238 (298)
T PF04204_consen 204 APGLEVLAESEEAG---VFLVASKDGRQVFITGHPEYD 238 (298)
T ss_dssp -TTEEEEEEETTTE---EEEEEECCCTEEEE-S-TT--
T ss_pred CCCcEEEeccCCcc---eEEEEcCCCCEEEEeCCCccC
Confidence 56899999998777 777777777777799999984
No 88
>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=60.79 E-value=16 Score=28.42 Aligned_cols=34 Identities=15% Similarity=0.245 Sum_probs=25.8
Q ss_pred ecCCCCeeEEEEEeCCCcEEEEeecCCCCccccc
Q psy12876 16 SKYKSWEFVSTVEHKEYPIVGIQFHPEKNAYEWT 49 (115)
Q Consensus 16 s~d~~~~fv~aie~~~~pi~gvQfHPE~~~~e~~ 49 (115)
|.+|...=|++|-..+-.+.|..-||||....|-
T Consensus 181 NPNGS~~~IaGI~n~~G~V~gmMPHPERa~~~~~ 214 (231)
T COG0047 181 NPNGSVNGIAGITNEDGNVLGMMPHPERASESLL 214 (231)
T ss_pred CCCCChhhceeEEcCCCCEEEecCCchhhhhccc
Confidence 4344333388999899999999999999876653
No 89
>KOG3210|consensus
Probab=44.27 E-value=46 Score=25.17 Aligned_cols=25 Identities=24% Similarity=0.480 Sum_probs=17.4
Q ss_pred CCCeeEEEEEeCCCcEEEEeecCCCC
Q psy12876 19 KSWEFVSTVEHKEYPIVGIQFHPEKN 44 (115)
Q Consensus 19 ~~~~fv~aie~~~~pi~gvQfHPE~~ 44 (115)
++.+-|-|.+- +.||.|.-||||-.
T Consensus 181 nG~~~iVAa~Q-~~~iL~TSFHPELa 205 (226)
T KOG3210|consen 181 NGQELIVAAKQ-KNNILATSFHPELA 205 (226)
T ss_pred CCcEEEEEEec-cCCEeeeecChhhh
Confidence 34444555553 45899999999974
No 90
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=40.97 E-value=51 Score=16.72 Aligned_cols=21 Identities=29% Similarity=0.422 Sum_probs=17.1
Q ss_pred EEEEEeCCCcEEEEeecCCCC
Q psy12876 24 VSTVEHKEYPIVGIQFHPEKN 44 (115)
Q Consensus 24 v~aie~~~~pi~gvQfHPE~~ 44 (115)
+..+++...+|.++.|||...
T Consensus 4 ~~~~~~h~~~i~~i~~~~~~~ 24 (39)
T PF00400_consen 4 VRTFRGHSSSINSIAWSPDGN 24 (39)
T ss_dssp EEEEESSSSSEEEEEEETTSS
T ss_pred EEEEcCCCCcEEEEEEecccc
Confidence 566777888999999999843
No 91
>KOG1273|consensus
Probab=39.65 E-value=15 Score=30.33 Aligned_cols=14 Identities=43% Similarity=0.916 Sum_probs=11.9
Q ss_pred CCcEEEEeecCCCC
Q psy12876 31 EYPIVGIQFHPEKN 44 (115)
Q Consensus 31 ~~pi~gvQfHPE~~ 44 (115)
+.||+|+||||-+.
T Consensus 106 ~spv~~~q~hp~k~ 119 (405)
T KOG1273|consen 106 DSPVWGAQWHPRKR 119 (405)
T ss_pred cCccceeeeccccC
Confidence 56999999999764
No 92
>TIGR01001 metA homoserine O-succinyltransferase. The apparent equivalog from Bacillus subtilis is broken into two tandem reading frames.
Probab=35.12 E-value=64 Score=26.04 Aligned_cols=34 Identities=24% Similarity=0.198 Sum_probs=26.8
Q ss_pred CCcEEEEEecCCCCeeEEEEEeCCCcEEEEeecCCCC
Q psy12876 8 ETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKN 44 (115)
Q Consensus 8 ~~f~v~a~s~d~~~~fv~aie~~~~pi~gvQfHPE~~ 44 (115)
++++|+|.+++.| +..+..++..-.=++=|||..
T Consensus 205 ~~L~vla~s~e~G---~~l~~s~d~r~vfi~GH~EYd 238 (300)
T TIGR01001 205 TDLEILAESDEAG---VYLAANKDERNIFVTGHPEYD 238 (300)
T ss_pred CCCeEEecCCCcc---eEEEEcCCCCEEEEcCCCccC
Confidence 5799999998777 777777765555599999984
No 93
>PF14124 DUF4291: Domain of unknown function (DUF4291)
Probab=35.07 E-value=20 Score=26.84 Aligned_cols=12 Identities=33% Similarity=0.744 Sum_probs=9.5
Q ss_pred EEEeecCCCCcc
Q psy12876 35 VGIQFHPEKNAY 46 (115)
Q Consensus 35 ~gvQfHPE~~~~ 46 (115)
.=|||.||+.+.
T Consensus 109 VrvQWDPErd~~ 120 (181)
T PF14124_consen 109 VRVQWDPERDPR 120 (181)
T ss_pred eEEEECcccCCC
Confidence 368999999753
No 94
>PF08343 RNR_N: Ribonucleotide reductase N-terminal; InterPro: IPR013554 This domain is found at the N terminus of bacterial ribonucleoside-diphosphate reductases (ribonucleotide reductases, RNRs) which catalyse the formation of deoxyribonucleotides []. It occurs together with the RNR all-alpha domain (IPR013509 from INTERPRO) and the RNR barrel domain (IPR000788 from INTERPRO). ; GO: 0004748 ribonucleoside-diphosphate reductase activity, 0006260 DNA replication, 0055114 oxidation-reduction process, 0005971 ribonucleoside-diphosphate reductase complex; PDB: 1PEM_A 2BQ1_E 1PEU_A 1PEQ_A 1PEO_A.
Probab=30.19 E-value=46 Score=21.61 Aligned_cols=31 Identities=19% Similarity=0.315 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHhCCCCCCCHHHHHhhcccc
Q psy12876 65 RFFSDWFIDKARLNNNSFASRDDLYKSLIQN 95 (115)
Q Consensus 65 q~l~~fFv~~ar~~~~~f~~~~~~~~~li~n 95 (115)
..+..+|.+.+..|..+|.|..|..+.||.|
T Consensus 24 eA~~~y~~~~V~pnt~~F~S~~Erl~yLv~~ 54 (82)
T PF08343_consen 24 EAVRAYFKEHVNPNTVKFNSLKERLDYLVEN 54 (82)
T ss_dssp HHHHHHHHHTTGGGB---SSHHHHHHHHHHT
T ss_pred HHHHHHHHHhcccceeecCCHHHHHHHHHHc
Confidence 3477788787999999999999999999976
No 95
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=27.14 E-value=71 Score=14.14 Aligned_cols=20 Identities=20% Similarity=0.542 Sum_probs=14.4
Q ss_pred EEEEEeCCCcEEEEeecCCC
Q psy12876 24 VSTVEHKEYPIVGIQFHPEK 43 (115)
Q Consensus 24 v~aie~~~~pi~gvQfHPE~ 43 (115)
+..+.....++.+++|+|..
T Consensus 5 ~~~~~~~~~~i~~~~~~~~~ 24 (40)
T smart00320 5 LKTLKGHTGPVTSVAFSPDG 24 (40)
T ss_pred EEEEEecCCceeEEEECCCC
Confidence 44555556678999999965
No 96
>PHA03366 FGAM-synthase; Provisional
Probab=25.20 E-value=43 Score=32.07 Aligned_cols=27 Identities=15% Similarity=0.244 Sum_probs=24.3
Q ss_pred EEEEEeCCCcEEEEeecCCCCcccccc
Q psy12876 24 VSTVEHKEYPIVGIQFHPEKNAYEWTE 50 (115)
Q Consensus 24 v~aie~~~~pi~gvQfHPE~~~~e~~~ 50 (115)
|+||-..+-.+.|...|||+..+.|.-
T Consensus 1247 IaGi~s~dGR~l~mMphPer~~~~~q~ 1273 (1304)
T PHA03366 1247 VAGLCSADGRHLALLFDPSLSFHPWQW 1273 (1304)
T ss_pred eeeEECCCCCEEEecCCHHHhhhhhhC
Confidence 899999999999999999999887753
No 97
>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase. This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model.
Probab=24.51 E-value=43 Score=31.74 Aligned_cols=27 Identities=11% Similarity=0.260 Sum_probs=24.1
Q ss_pred EEEEEeCCCcEEEEeecCCCCcccccc
Q psy12876 24 VSTVEHKEYPIVGIQFHPEKNAYEWTE 50 (115)
Q Consensus 24 v~aie~~~~pi~gvQfHPE~~~~e~~~ 50 (115)
|+||-..+-.+.|...|||+....|.-
T Consensus 1148 IAGi~s~dGR~l~lMphPer~~~~~q~ 1174 (1202)
T TIGR01739 1148 VAGLCSADGRHLALLIDPSLSFFPWQW 1174 (1202)
T ss_pred eeeEECCCCCEEEecCCHHHhhhhhhC
Confidence 899999999999999999999877753
No 98
>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional
Probab=24.20 E-value=45 Score=31.87 Aligned_cols=27 Identities=11% Similarity=0.130 Sum_probs=24.0
Q ss_pred EEEEEeCCCcEEEEeecCCCCcccccc
Q psy12876 24 VSTVEHKEYPIVGIQFHPEKNAYEWTE 50 (115)
Q Consensus 24 v~aie~~~~pi~gvQfHPE~~~~e~~~ 50 (115)
|+||-..+-.++|...|||+....|.-
T Consensus 1239 IaGi~s~dGrvlglMpHPEr~~~~~q~ 1265 (1290)
T PRK05297 1239 ITGLTTADGRVTIMMPHPERVFRTVQN 1265 (1290)
T ss_pred ceEeECCCCCEEEEcCChHHhcchhhc
Confidence 889999999999999999999887753
No 99
>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional
Probab=22.66 E-value=47 Score=31.86 Aligned_cols=27 Identities=15% Similarity=0.279 Sum_probs=24.1
Q ss_pred EEEEEeCCCcEEEEeecCCCCcccccc
Q psy12876 24 VSTVEHKEYPIVGIQFHPEKNAYEWTE 50 (115)
Q Consensus 24 v~aie~~~~pi~gvQfHPE~~~~e~~~ 50 (115)
|+||-..+..++|..-|||+....|.-
T Consensus 1252 IAGi~s~dGRvlgmMpHPER~~~~~q~ 1278 (1307)
T PLN03206 1252 IAALCSPDGRHLAMMPHPERCFLMWQF 1278 (1307)
T ss_pred ceeeECCCCCEEEEcCCHHHhhhhhhC
Confidence 889999999999999999999888753
No 100
>PF01606 Arteri_env: Arterivirus envelope protein; InterPro: IPR002556 This family consists of viral envelope proteins from the Arteriviridae; this includes Porcine reproductive and respiratory syndrome virus (PRRSV) envelope protein GP3 and Lactate dehydrogenase-elevating virus (LDV) structural glycoprotein. Arteriviruses consists of positive ssRNA and do not have a DNA stage.
Probab=22.57 E-value=15 Score=27.67 Aligned_cols=10 Identities=50% Similarity=0.677 Sum_probs=8.2
Q ss_pred EEEeecCCCC
Q psy12876 35 VGIQFHPEKN 44 (115)
Q Consensus 35 ~gvQfHPE~~ 44 (115)
|+.|||||.-
T Consensus 120 yaaqfhPEiF 129 (214)
T PF01606_consen 120 YAAQFHPEIF 129 (214)
T ss_pred HHHhhChhhh
Confidence 6789999973
No 101
>PF10210 MRP-S32: Mitochondrial 28S ribosomal protein S32; InterPro: IPR019346 This entry represents a family of short proteins; each approximately 100 amino acid residues in length. They are identified as the mitochondrial 28S ribosomal proteins S32.
Probab=22.49 E-value=2.5e+02 Score=18.84 Aligned_cols=14 Identities=50% Similarity=0.987 Sum_probs=9.8
Q ss_pred EeecCCCC-cccccc
Q psy12876 37 IQFHPEKN-AYEWTE 50 (115)
Q Consensus 37 vQfHPE~~-~~e~~~ 50 (115)
|-|||+.. +||...
T Consensus 16 VcwHP~~~fPYEhTK 30 (96)
T PF10210_consen 16 VCWHPEKDFPYEHTK 30 (96)
T ss_pred EEeCCCCCCCccccc
Confidence 67999874 666544
No 102
>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit.
Probab=21.97 E-value=43 Score=32.06 Aligned_cols=27 Identities=15% Similarity=0.321 Sum_probs=24.1
Q ss_pred EEEEEeCCCcEEEEeecCCCCcccccc
Q psy12876 24 VSTVEHKEYPIVGIQFHPEKNAYEWTE 50 (115)
Q Consensus 24 v~aie~~~~pi~gvQfHPE~~~~e~~~ 50 (115)
|+||-..+..++|...|||+....|.-
T Consensus 1260 IaGi~s~dGrvl~~MpHPEr~~~~~q~ 1286 (1310)
T TIGR01735 1260 IAGITSCDGRVTIMMPHPERVFRAWQN 1286 (1310)
T ss_pred ceEeECCCCCEEEEcCCHHHhhhHhhC
Confidence 889999999999999999999887753
No 103
>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP.
Probab=20.69 E-value=1.1e+02 Score=29.27 Aligned_cols=25 Identities=16% Similarity=0.163 Sum_probs=21.4
Q ss_pred EEEEEeCCCcEEEEeecCCCCcccc
Q psy12876 24 VSTVEHKEYPIVGIQFHPEKNAYEW 48 (115)
Q Consensus 24 v~aie~~~~pi~gvQfHPE~~~~e~ 48 (115)
|+||-..+..++|..-||||....+
T Consensus 1195 IaGi~s~dGrvlg~MpHpER~~~~~ 1219 (1239)
T TIGR01857 1195 IEGITSPDGRIFGKMGHSERYGDGL 1219 (1239)
T ss_pred hhEeECCCCCEEEECCCcccccCcc
Confidence 7888888999999999999975443
No 104
>KOG0717|consensus
Probab=20.29 E-value=61 Score=27.91 Aligned_cols=14 Identities=43% Similarity=0.997 Sum_probs=10.8
Q ss_pred CCcEEEEeecCCCC
Q psy12876 31 EYPIVGIQFHPEKN 44 (115)
Q Consensus 31 ~~pi~gvQfHPE~~ 44 (115)
+|.=.|+||||.++
T Consensus 28 ~YRklALq~HPDkn 41 (508)
T KOG0717|consen 28 NYRKLALQYHPDKN 41 (508)
T ss_pred HHHHHHHhhCCCCC
Confidence 34456999999995
Done!