Query psy12876
Match_columns 115
No_of_seqs 208 out of 1910
Neff 6.4
Searched_HMMs 29240
Date Fri Aug 16 22:00:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12876.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12876hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1l9x_A Gamma-glutamyl hydrolas 100.0 1.8E-31 6.2E-36 209.2 9.8 109 5-115 206-315 (315)
2 1wl8_A GMP synthase [glutamine 99.2 2.4E-11 8.1E-16 87.5 6.1 55 5-77 134-188 (189)
3 3fij_A LIN1909 protein; 11172J 99.1 1.1E-10 3.9E-15 88.1 7.9 60 4-79 183-244 (254)
4 3tqi_A GMP synthase [glutamine 99.1 4.1E-11 1.4E-15 99.3 5.9 61 4-81 151-211 (527)
5 2w7t_A CTP synthetase, putativ 99.1 5.5E-11 1.9E-15 91.1 5.0 65 6-84 195-263 (273)
6 1gpm_A GMP synthetase, XMP ami 99.1 1.1E-10 3.6E-15 96.7 6.2 59 5-80 149-207 (525)
7 2vpi_A GMP synthase; guanine m 99.1 1.5E-10 5.2E-15 85.9 6.3 58 4-80 157-215 (218)
8 2v4u_A CTP synthase 2; pyrimid 99.1 4.6E-11 1.6E-15 92.3 3.5 64 4-83 217-282 (289)
9 2a9v_A GMP synthase; structura 99.1 1.9E-10 6.4E-15 84.9 6.6 55 5-77 147-201 (212)
10 2ywb_A GMP synthase [glutamine 99.1 2E-10 6.7E-15 94.6 6.3 59 5-81 132-190 (503)
11 1qdl_B Protein (anthranilate s 99.0 6E-10 2E-14 80.8 7.7 38 5-45 142-180 (195)
12 1a9x_B Carbamoyl phosphate syn 99.0 6E-10 2.1E-14 89.5 7.5 56 5-77 319-375 (379)
13 3uow_A GMP synthetase; structu 99.0 2.7E-10 9.4E-15 95.1 5.1 60 5-81 177-236 (556)
14 1i1q_B Anthranilate synthase c 98.9 1.8E-09 6E-14 78.0 7.0 39 4-46 137-175 (192)
15 2vxo_A GMP synthase [glutamine 98.9 1.3E-09 4.4E-14 93.3 6.7 60 4-81 162-221 (697)
16 4gud_A Imidazole glycerol phos 98.9 1.3E-09 4.6E-14 79.2 4.0 54 6-78 154-207 (211)
17 3d54_D Phosphoribosylformylgly 98.9 2.2E-09 7.5E-14 77.8 4.9 60 7-76 151-212 (213)
18 2ywj_A Glutamine amidotransfer 98.8 5.4E-09 1.9E-13 74.7 5.9 50 5-77 135-185 (186)
19 3nva_A CTP synthase; rossman f 98.8 4.2E-09 1.4E-13 87.9 5.0 54 7-77 480-534 (535)
20 1s1m_A CTP synthase; CTP synth 98.7 5.6E-09 1.9E-13 87.3 4.6 55 7-78 483-539 (545)
21 1vco_A CTP synthetase; tetrame 98.7 9.1E-09 3.1E-13 86.1 4.5 58 8-79 486-547 (550)
22 1gpw_B Amidotransferase HISH; 98.6 2.4E-08 8.4E-13 72.1 3.5 49 9-77 149-199 (201)
23 3r75_A Anthranilate/para-amino 98.6 6.6E-08 2.3E-12 82.1 6.1 36 5-45 583-618 (645)
24 1o1y_A Conserved hypothetical 98.5 1.6E-07 5.4E-12 70.3 5.9 35 5-44 155-189 (239)
25 2ywd_A Glutamine amidotransfer 98.5 1.7E-07 5.8E-12 66.8 5.3 48 5-76 143-190 (191)
26 2nv0_A Glutamine amidotransfer 98.4 5.2E-07 1.8E-11 64.8 6.0 49 5-77 141-189 (196)
27 3m3p_A Glutamine amido transfe 98.4 2.6E-07 9.1E-12 70.0 4.5 36 5-44 145-180 (250)
28 1q7r_A Predicted amidotransfer 98.4 4.5E-07 1.5E-11 66.7 5.5 49 5-77 163-211 (219)
29 3l7n_A Putative uncharacterize 98.3 4.3E-07 1.5E-11 67.5 3.9 37 4-44 147-183 (236)
30 2iss_D Glutamine amidotransfer 98.3 5E-07 1.7E-11 65.8 3.9 33 6-44 162-194 (208)
31 2abw_A PDX2 protein, glutamina 98.3 9E-07 3.1E-11 65.1 4.9 49 7-78 163-216 (227)
32 1ka9_H Imidazole glycerol phos 98.2 7.4E-07 2.5E-11 64.4 2.9 30 11-44 152-182 (200)
33 1jvn_A Glutamine, bifunctional 97.8 8E-06 2.7E-10 68.0 2.7 36 7-44 165-200 (555)
34 2vdj_A Homoserine O-succinyltr 96.8 0.0012 4.2E-08 51.3 4.3 33 9-44 207-239 (301)
35 2h2w_A Homoserine O-succinyltr 96.6 0.0019 6.5E-08 50.5 4.5 34 8-44 217-250 (312)
36 4h5i_A Guanine nucleotide-exch 45.6 13 0.00045 27.6 2.7 24 21-44 4-27 (365)
37 3ugj_A Phosphoribosylformylgly 28.5 34 0.0012 31.4 2.9 27 24-50 1252-1278(1303)
38 4gl6_A Hypothetical protein; s 27.0 1.6E+02 0.0055 21.2 5.7 38 7-44 19-64 (247)
No 1
>1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1
Probab=99.97 E-value=1.8e-31 Score=209.25 Aligned_cols=109 Identities=34% Similarity=0.696 Sum_probs=101.0
Q ss_pred CCCCCcEEEEEecCCCCeeEEEEEeCCCcEEEEeecCCCCccccccCCCCCCCHhHHHHHHHHHHHHHHHHHhCCCCCCC
Q psy12876 5 GLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNAYEWTESQHNPHSHDDIISARFFSDWFIDKARLNNNSFAS 84 (115)
Q Consensus 5 ~L~~~f~v~a~s~d~~~~fv~aie~~~~pi~gvQfHPE~~~~e~~~~~~~~hs~~~~~~~q~l~~fFv~~ar~~~~~f~~ 84 (115)
.||++++++|++.|+..++|+++++++.|++|||||||+..++|+....++||.++++.++.|++.|+++||++.|+|+|
T Consensus 206 ~l~~g~~v~A~s~dg~ve~i~~i~~~~~~i~GVQfHPE~~~~e~~~~~~~p~s~~a~~~~~~lf~~Fv~~a~~~~~~f~~ 285 (315)
T 1l9x_A 206 KLKKFFNVLTTNTDGKIEFISTMEGYKYPVYGVQWHPEKAPYEWKNLDGISHAPNAVKTAFYLAEFFVNEARKNNHHFKS 285 (315)
T ss_dssp HHHHHEEEEEEEESSSCEEEEEEEESSSCEEEESSCTTHHHHCCSSCTTCCCCHHHHHHHHHHHHHHHHHHTTSCCCCSS
T ss_pred ccCCCCEEEEEcCCCCEEEEEEeccCCCCEEEEEeCCCCCcccccccccCCccHHHHHHHHHHHHHHHHHHHhccCCCCC
Confidence 57789999999998888888999999889999999999999999875567999999999999999999999999999999
Q ss_pred HHHHHhhccccccccccCCCCC-ceeEEEecC
Q psy12876 85 RDDLYKSLIQNYPNVMSYPNKL-GFEQIYLFK 115 (115)
Q Consensus 85 ~~~~~~~li~n~~~~~~~~~~~-~~~q~Y~f~ 115 (115)
.++|.++|||||+|+ |||.. +|+|||||+
T Consensus 286 ~~~~~~~liyn~~p~--~~~~~~~~~q~y~f~ 315 (315)
T 1l9x_A 286 ESEEEKALIYQFSPI--YTGNISSFQQCYIFD 315 (315)
T ss_dssp HHHHHHHSGGGCCCE--ECTTTSSCSEEEEEC
T ss_pred HHHHHHhhhccCCCE--ecCCCCCeeEEEeeC
Confidence 999999999999999 99965 899999996
No 2
>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A
Probab=99.19 E-value=2.4e-11 Score=87.49 Aligned_cols=55 Identities=29% Similarity=0.424 Sum_probs=44.6
Q ss_pred CCCCCcEEEEEecCCCCeeEEEEEeCCCcEEEEeecCCCCccccccCCCCCCCHhHHHHHHHHHHHHHHHHHh
Q psy12876 5 GLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNAYEWTESQHNPHSHDDIISARFFSDWFIDKARL 77 (115)
Q Consensus 5 ~L~~~f~v~a~s~d~~~~fv~aie~~~~pi~gvQfHPE~~~~e~~~~~~~~hs~~~~~~~q~l~~fFv~~ar~ 77 (115)
+||++++++|+++|+. ++|+++++.|++|+|||||+..++ .+ ..|++-|++.|++
T Consensus 134 ~l~~~~~vla~s~~g~---i~a~~~~~~~~~gvQfHPE~~~~~-----------~g----~~l~~~f~~~~~~ 188 (189)
T 1wl8_A 134 ELPPKFKILARSETCP---IEAMKHEELPIYGVQFHPEVAHTE-----------KG----EEILRNFAKLCGE 188 (189)
T ss_dssp ECCTTEEEEEEESSCS---CSEEEESSSCEEEESSCTTSTTST-----------TH----HHHHHHHHHHHCC
T ss_pred hCCCCcEEEEEcCCCC---EEEEEeCCceEEEEecCCCcCCCc-----------ch----HHHHHHHHHHHhh
Confidence 5789999999998887 999999999999999999996332 22 3477777788853
No 3
>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua}
Probab=99.14 E-value=1.1e-10 Score=88.14 Aligned_cols=60 Identities=15% Similarity=0.233 Sum_probs=48.6
Q ss_pred CCCCCCcEEEEEecCCCCeeEEEEEeC-CCc-EEEEeecCCCCccccccCCCCCCCHhHHHHHHHHHHHHHHHHHhCC
Q psy12876 4 YGLTETWNILTLSKYKSWEFVSTVEHK-EYP-IVGIQFHPEKNAYEWTESQHNPHSHDDIISARFFSDWFIDKARLNN 79 (115)
Q Consensus 4 ~~L~~~f~v~a~s~d~~~~fv~aie~~-~~p-i~gvQfHPE~~~~e~~~~~~~~hs~~~~~~~q~l~~fFv~~ar~~~ 79 (115)
..||++++++|++.|+. |+|++++ +.| ++|||||||+.... +.. +..|++.|++.|++..
T Consensus 183 ~~l~~g~~v~a~s~dg~---ieai~~~~~~~~~~gvQfHPE~~~~~---------~~~----~~~lf~~Fv~~~~~~~ 244 (254)
T 3fij_A 183 KKLAPSFKVTARTADGM---IEAVEGDNLPSWYLGVQWHPELMFQT---------DPE----SEQLFQALVDESKKTM 244 (254)
T ss_dssp SSCCSSEEEEEEETTCC---EEEEEESSCSSCEEEESSCGGGTGGG---------CHH----HHHHHHHHHHHHHSCC
T ss_pred hccCCCcEEEEEeCCCc---EEEEEecCCCCeEEEEEcCCccCCCC---------Cch----HHHHHHHHHHHHHHHH
Confidence 36899999999999887 9999999 988 99999999996321 222 3558888899998654
No 4
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=99.14 E-value=4.1e-11 Score=99.29 Aligned_cols=61 Identities=16% Similarity=0.259 Sum_probs=52.6
Q ss_pred CCCCCCcEEEEEecCCCCeeEEEEEeCCCcEEEEeecCCCCccccccCCCCCCCHhHHHHHHHHHHHHHHHHHhCCCC
Q psy12876 4 YGLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNAYEWTESQHNPHSHDDIISARFFSDWFIDKARLNNNS 81 (115)
Q Consensus 4 ~~L~~~f~v~a~s~d~~~~fv~aie~~~~pi~gvQfHPE~~~~e~~~~~~~~hs~~~~~~~q~l~~fFv~~ar~~~~~ 81 (115)
..||++|+++|++.++. ++|+++++.|+||+|||||+. |++.|.++ |.||+.++|++....
T Consensus 151 ~~lp~g~~v~A~s~~~~---i~ai~~~~~~~~GvQFHPE~~-----------~t~~G~~l---l~nF~~~i~~~~~~w 211 (527)
T 3tqi_A 151 SELPPGFEATACTDNSP---LAAMADFKRRFFGLQFHPEVT-----------HTPQGHRI---LAHFVIHICQCIPNW 211 (527)
T ss_dssp CSCCTTCEEEEEETTEE---EEEEECSSSCEEEESBCSSST-----------TSTTHHHH---HHHHHHTTSCCCCCC
T ss_pred hccCCCCEEEEEeCCCc---EEEEEcCCCCEEEEEeccccc-----------cccccchh---hhhhhhhcccccchh
Confidence 46899999999998777 999999999999999999995 66667644 899999999988754
No 5
>2w7t_A CTP synthetase, putative cytidine triphosphate synthase; glutaminase domain, trypsanosoma brucei, ligase, acivicin; HET: 5CS; 2.10A {Trypanosoma brucei}
Probab=99.11 E-value=5.5e-11 Score=91.11 Aligned_cols=65 Identities=18% Similarity=0.134 Sum_probs=49.4
Q ss_pred C-CCCcEEEEEecCCC--CeeEEEEEeCCCcEE-EEeecCCCCccccccCCCCCCCHhHHHHHHHHHHHHHHHHHhCCCC
Q psy12876 6 L-TETWNILTLSKYKS--WEFVSTVEHKEYPIV-GIQFHPEKNAYEWTESQHNPHSHDDIISARFFSDWFIDKARLNNNS 81 (115)
Q Consensus 6 L-~~~f~v~a~s~d~~--~~fv~aie~~~~pi~-gvQfHPE~~~~e~~~~~~~~hs~~~~~~~q~l~~fFv~~ar~~~~~ 81 (115)
| |++++++|++.|+. ..+|++++++++|++ |||||||+...+. . ...|++-|++.|+++.+.
T Consensus 195 l~~~g~~v~A~s~d~~~~g~~ieaie~~~~p~~~GvQfHPE~~~~~~--------~------~~~l~~~Fv~~~~~~~~~ 260 (273)
T 2w7t_A 195 LRKAGLCISAVTDPTFSSRCRVEAVENPSLRFFLAVQFHPEFISTPM--------D------PAPTYLSFMAAAAKKDYV 260 (273)
T ss_dssp HHHTTCEEEEESCTTCCTTCCEEEEECTTSSSEEEESSCGGGSCBTT--------B------CCHHHHHHHHHHHTCCCC
T ss_pred hccCCcEEEEEcCCcCCCCCeEEEEEcCCCCeEEEEeCCCCcCCCCC--------c------hHHHHHHHHHHHHHHHHh
Confidence 5 68899999998621 135999999999965 9999999974421 1 024888889999998888
Q ss_pred CCC
Q psy12876 82 FAS 84 (115)
Q Consensus 82 f~~ 84 (115)
|.+
T Consensus 261 ~~~ 263 (273)
T 2w7t_A 261 WPQ 263 (273)
T ss_dssp CCS
T ss_pred hhh
Confidence 764
No 6
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=99.09 E-value=1.1e-10 Score=96.70 Aligned_cols=59 Identities=15% Similarity=0.327 Sum_probs=50.0
Q ss_pred CCCCCcEEEEEecCCCCeeEEEEEeCCCcEEEEeecCCCCccccccCCCCCCCHhHHHHHHHHHHHHHHHHHhCCC
Q psy12876 5 GLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNAYEWTESQHNPHSHDDIISARFFSDWFIDKARLNNN 80 (115)
Q Consensus 5 ~L~~~f~v~a~s~d~~~~fv~aie~~~~pi~gvQfHPE~~~~e~~~~~~~~hs~~~~~~~q~l~~fFv~~ar~~~~ 80 (115)
.||++|+++|++.++. ++|+++++.|++|||||||+. |++.|.+ .|.+|+.++|++...
T Consensus 149 ~lp~g~~v~A~s~~~~---i~ai~~~~~~i~gvQFHPE~~-----------~~~~g~~---ll~nF~~~i~~~~~~ 207 (525)
T 1gpm_A 149 AIPSDFITVASTESCP---FAIMANEEKRFYGVQFHPEVT-----------HTRQGMR---MLERFVRDICQCEAL 207 (525)
T ss_dssp ECCTTCEEEEECSSCS---CSEEEETTTTEEEESBCTTST-----------TSTTHHH---HHHHHHHTTSCCCCC
T ss_pred eCCCCCEEEEECCCCC---EEEEEECCCCEEEEecCCCCC-----------cchhHHH---HHHHHHHhhhhcccc
Confidence 5899999999998887 999999889999999999995 5656654 488888899987764
No 7
>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens}
Probab=99.08 E-value=1.5e-10 Score=85.95 Aligned_cols=58 Identities=19% Similarity=0.347 Sum_probs=44.9
Q ss_pred CCCCCCcEEEEEecCCCCeeEEEEEeCCCcEEEEeecCCCCccccccCCCCCCCHhHHHHHHHHHHHHH-HHHHhCCC
Q psy12876 4 YGLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNAYEWTESQHNPHSHDDIISARFFSDWFI-DKARLNNN 80 (115)
Q Consensus 4 ~~L~~~f~v~a~s~d~~~~fv~aie~~~~pi~gvQfHPE~~~~e~~~~~~~~hs~~~~~~~q~l~~fFv-~~ar~~~~ 80 (115)
..||++++++|++ ++. |+|+++++.|++|||||||+.. ++.+ ..|++-|+ +.|++.++
T Consensus 157 ~~l~~~~~vlA~s-~~~---i~ai~~~~~~i~gvQfHPE~~~-----------~~~g----~~l~~~F~~~~~~~~~~ 215 (218)
T 2vpi_A 157 DKVADGFKVVARS-GNI---VAGIANESKKLYGAQFHPEVGL-----------TENG----KVILKNFLYDIAGCSGT 215 (218)
T ss_dssp SSCCTTCEEEEEE-TTE---EEEEEETTTTEEEESSCTTSTT-----------STTH----HHHHHHHHTTTTCCCCC
T ss_pred hhcCCCCEEEEEc-CCe---EEEEEECCCCEEEEEcCCCCCC-----------ChhH----HHHHHHHHHHHhCCCCC
Confidence 3688999999999 554 9999999899999999999963 2223 33666666 88887654
No 8
>2v4u_A CTP synthase 2; pyrimidine biosynthesis, glutamine amidotransferase, glutaminase domain, 5-OXO-L-norleucine, DON, ligase, phosphoprotein; HET: CYD; 2.3A {Homo sapiens} PDB: 2vkt_A
Probab=99.08 E-value=4.6e-11 Score=92.29 Aligned_cols=64 Identities=19% Similarity=0.175 Sum_probs=50.2
Q ss_pred CCCC-CCcEEEEEecCCCCeeEEEEEeCCCcEE-EEeecCCCCccccccCCCCCCCHhHHHHHHHHHHHHHHHHHhCCCC
Q psy12876 4 YGLT-ETWNILTLSKYKSWEFVSTVEHKEYPIV-GIQFHPEKNAYEWTESQHNPHSHDDIISARFFSDWFIDKARLNNNS 81 (115)
Q Consensus 4 ~~L~-~~f~v~a~s~d~~~~fv~aie~~~~pi~-gvQfHPE~~~~e~~~~~~~~hs~~~~~~~q~l~~fFv~~ar~~~~~ 81 (115)
..|| ++++++|++.|+. +|+|++++++|++ |||||||+...+.. + ..|++.|++.|+++.+.
T Consensus 217 ~~l~~~g~~v~A~s~dg~--~ieaie~~~~p~~lGvQfHPE~~~~~~~-----~---------~~lf~~Fv~~~~~~~~~ 280 (289)
T 2v4u_A 217 KQFEQNDLSFVGQDVDGD--RMEIIELANHPYFVGVQFHPEFSSRPMK-----P---------SPPYLGLLLAATGNLNA 280 (289)
T ss_dssp GGGTTSSEEEEEEETTSC--SEEEEEESSSSCEEEESSBGGGGCBTTB-----C---------CHHHHHHHHHHHTCHHH
T ss_pred HhcccCCeEEEEEcCCCC--eEEEEEcCCCCeEEEEECCCCCCCCCCc-----h---------HHHHHHHHHHHHhhhhh
Confidence 3577 8999999998763 3999999999965 99999999743211 1 23889999999988877
Q ss_pred CC
Q psy12876 82 FA 83 (115)
Q Consensus 82 f~ 83 (115)
|.
T Consensus 281 ~~ 282 (289)
T 2v4u_A 281 YL 282 (289)
T ss_dssp HH
T ss_pred hh
Confidence 74
No 9
>2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1
Probab=99.08 E-value=1.9e-10 Score=84.87 Aligned_cols=55 Identities=27% Similarity=0.322 Sum_probs=44.6
Q ss_pred CCCCCcEEEEEecCCCCeeEEEEEeCCCcEEEEeecCCCCccccccCCCCCCCHhHHHHHHHHHHHHHHHHHh
Q psy12876 5 GLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNAYEWTESQHNPHSHDDIISARFFSDWFIDKARL 77 (115)
Q Consensus 5 ~L~~~f~v~a~s~d~~~~fv~aie~~~~pi~gvQfHPE~~~~e~~~~~~~~hs~~~~~~~q~l~~fFv~~ar~ 77 (115)
.||++++++|+++|+. ++|+++++.|++|||||||+.. ++.+ ..|++.|++.|++
T Consensus 147 ~l~~~~~vlA~s~d~~---i~ai~~~~~~i~gvQfHPE~~~-----------~~~g----~~l~~~F~~~~~~ 201 (212)
T 2a9v_A 147 NLPDDFTLAASSATCQ---VQGFYHKTRPIYATQFHPEVEH-----------TQYG----RDIFRNFIGICAS 201 (212)
T ss_dssp SCCTTEEEEEECSSCS---CSEEEESSSSEEEESSCTTSTT-----------STTH----HHHHHHHHHHHHH
T ss_pred hCCCCcEEEEEeCCCC---EEEEEECCCCEEEEEeCCCCCC-----------CccH----HHHHHHHHHHHHH
Confidence 5889999999998887 9999998889999999999963 2223 3477777788865
No 10
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=99.05 E-value=2e-10 Score=94.61 Aligned_cols=59 Identities=17% Similarity=0.427 Sum_probs=47.7
Q ss_pred CCCCCcEEEEEecCCCCeeEEEEEeCCCcEEEEeecCCCCccccccCCCCCCCHhHHHHHHHHHHHHHHHHHhCCCC
Q psy12876 5 GLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNAYEWTESQHNPHSHDDIISARFFSDWFIDKARLNNNS 81 (115)
Q Consensus 5 ~L~~~f~v~a~s~d~~~~fv~aie~~~~pi~gvQfHPE~~~~e~~~~~~~~hs~~~~~~~q~l~~fFv~~ar~~~~~ 81 (115)
.||++|+++|++.++. ++|+++++.|++|||||||+. |++.|.+ .|.||+ ++|++....
T Consensus 132 ~lp~g~~v~A~s~~~~---i~ai~~~~~~~~gvQFHPE~~-----------~~~~g~~---ll~~F~-~~~~~~~~~ 190 (503)
T 2ywb_A 132 APPPGWRVVAETEENP---VAAIASPDGRAYGVQFHPEVA-----------HTPKGMQ---ILENFL-ELAGVKRDW 190 (503)
T ss_dssp ECCTTCEEEEECSSCS---CSEEECTTSSEEEESBCTTST-----------TSTTHHH---HHHHHH-HHTTCCCCC
T ss_pred cCCCCCEEEEEECCCC---EEEEEeCCCCEEEEecCCCcc-----------cccccHH---HHHHHH-HHhhhhccc
Confidence 5899999999998887 999999889999999999995 5555543 255555 999877643
No 11
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1
Probab=99.04 E-value=6e-10 Score=80.79 Aligned_cols=38 Identities=32% Similarity=0.629 Sum_probs=34.7
Q ss_pred CCCCCcEEEEEe-cCCCCeeEEEEEeCCCcEEEEeecCCCCc
Q psy12876 5 GLTETWNILTLS-KYKSWEFVSTVEHKEYPIVGIQFHPEKNA 45 (115)
Q Consensus 5 ~L~~~f~v~a~s-~d~~~~fv~aie~~~~pi~gvQfHPE~~~ 45 (115)
.||++++++|++ +++. ++|++++++|++|+|||||+..
T Consensus 142 ~l~~~~~vla~s~~~g~---i~a~~~~~~~~~gvQfHPE~~~ 180 (195)
T 1qdl_B 142 EVHRPLIVDAISAEDNE---IMAIHHEEYPIYGVQFHPESVG 180 (195)
T ss_dssp CCCTTEEEEEEESSSCC---EEEEEESSSSEEEESSBTTSTT
T ss_pred hCCCCcEEEEEECCCCc---EEEEEeCCCCEEEEecCCCCCC
Confidence 688999999999 7887 9999999889999999999964
No 12
>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B*
Probab=99.01 E-value=6e-10 Score=89.54 Aligned_cols=56 Identities=21% Similarity=0.274 Sum_probs=46.4
Q ss_pred CCCCCcEEEEEec-CCCCeeEEEEEeCCCcEEEEeecCCCCccccccCCCCCCCHhHHHHHHHHHHHHHHHHHh
Q psy12876 5 GLTETWNILTLSK-YKSWEFVSTVEHKEYPIVGIQFHPEKNAYEWTESQHNPHSHDDIISARFFSDWFIDKARL 77 (115)
Q Consensus 5 ~L~~~f~v~a~s~-d~~~~fv~aie~~~~pi~gvQfHPE~~~~e~~~~~~~~hs~~~~~~~q~l~~fFv~~ar~ 77 (115)
.||+++++++++. |+. ++|++++++|++|||||||+... +|+ +..|++-|++.|++
T Consensus 319 ~Lp~~~~v~a~s~~Dg~---ieai~~~~~pi~gVQFHPE~~~~--------p~d------~~~Lf~~Fl~~~~~ 375 (379)
T 1a9x_B 319 TLPANLRVTHKSLFDGT---LQGIHRTDKPAFSFQGNPEASPG--------PHD------AAPLFDHFIELIEQ 375 (379)
T ss_dssp TCCTTEEEEEEETTTCC---EEEEEESSSSEEEESSCTTCSSS--------CST------TTHHHHHHHHHHHH
T ss_pred cCCCCeEEEEEeCCCCc---EEEEEECCCCEEEEEeCCcCCCC--------ccc------HHHHHHHHHHHHHH
Confidence 5899999999994 788 99999999999999999999743 233 24588889998865
No 13
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}
Probab=99.00 E-value=2.7e-10 Score=95.05 Aligned_cols=60 Identities=23% Similarity=0.429 Sum_probs=50.1
Q ss_pred CCCCCcEEEEEecCCCCeeEEEEEeCCCcEEEEeecCCCCccccccCCCCCCCHhHHHHHHHHHHHHHHHHHhCCCC
Q psy12876 5 GLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNAYEWTESQHNPHSHDDIISARFFSDWFIDKARLNNNS 81 (115)
Q Consensus 5 ~L~~~f~v~a~s~d~~~~fv~aie~~~~pi~gvQfHPE~~~~e~~~~~~~~hs~~~~~~~q~l~~fFv~~ar~~~~~ 81 (115)
.||++++++|+++++. ++|+++++.|++|+|||||+. |++.|.++ |.||+.++|++..+.
T Consensus 177 ~lp~g~~vlA~s~~~~---i~ai~~~~~~i~GvQFHPE~~-----------~~~~G~~l---l~nFl~~i~g~~~~~ 236 (556)
T 3uow_A 177 KIPENFYLVSSSENCL---ICSIYNKEYNIYGVQYHPEVY-----------ESLDGELM---FYNFAYNICKCKKQF 236 (556)
T ss_dssp ECCTTCEEEEEETTEE---EEEEEETTTTEEEESSCTTST-----------TSTTHHHH---HHHHHTTTTCCCC-C
T ss_pred ccCCCcEEEEEeCCCC---EEEEEECCCCEEEEEcCCCCC-----------ccccchHH---HHHHHHHhhcccccc
Confidence 5899999999998887 999999888999999999995 56666643 888888999886643
No 14
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=98.94 E-value=1.8e-09 Score=78.02 Aligned_cols=39 Identities=26% Similarity=0.285 Sum_probs=32.7
Q ss_pred CCCCCCcEEEEEecCCCCeeEEEEEeCCCcEEEEeecCCCCcc
Q psy12876 4 YGLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNAY 46 (115)
Q Consensus 4 ~~L~~~f~v~a~s~d~~~~fv~aie~~~~pi~gvQfHPE~~~~ 46 (115)
..||++++++|.+ |+. ++++++++.|++|+|||||+..+
T Consensus 137 ~~lp~~~~v~a~~-~~~---~~ai~~~~~~~~gvQfHPE~~~~ 175 (192)
T 1i1q_B 137 SNVPAGLTINAHF-NGM---VMAVRHDADRVCGFQFHPESILT 175 (192)
T ss_dssp CCCCTTCEEEEEE-TTE---EEEEEETTTTEEEESSBTTSTTC
T ss_pred hhCCCccEEEECC-CCc---EEEEEECCCCEEEEEccCcccCC
Confidence 4688999999854 554 99999998999999999999643
No 15
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}
Probab=98.93 E-value=1.3e-09 Score=93.30 Aligned_cols=60 Identities=17% Similarity=0.348 Sum_probs=47.6
Q ss_pred CCCCCCcEEEEEecCCCCeeEEEEEeCCCcEEEEeecCCCCccccccCCCCCCCHhHHHHHHHHHHHHHHHHHhCCCC
Q psy12876 4 YGLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNAYEWTESQHNPHSHDDIISARFFSDWFIDKARLNNNS 81 (115)
Q Consensus 4 ~~L~~~f~v~a~s~d~~~~fv~aie~~~~pi~gvQfHPE~~~~e~~~~~~~~hs~~~~~~~q~l~~fFv~~ar~~~~~ 81 (115)
..||++|+++|+++ +. ++|+++++.|++|||||||+. |++.|.+ .|.+|+.++|++....
T Consensus 162 ~~lp~g~~vlA~s~-~~---i~ai~~~~~~i~GvQFHPE~~-----------~t~~g~~---ll~nFl~~i~~~~~~~ 221 (697)
T 2vxo_A 162 DKVADGFKVVARSG-NI---VAGIANESKKLYGAQFHPEVG-----------LTENGKV---ILKNFLYDIAGCSGTF 221 (697)
T ss_dssp SSCCTTCEEEEEET-TE---EEEEEETTTTEEEESSCTTSS-----------SSTTHHH---HHHHHHTTTTCCCSCC
T ss_pred ecCCCCeEEEEEeC-Cc---eEEEEeCCCCEEEEEecccCC-----------CCccchh---hhhhhhhccccccccc
Confidence 46899999999994 44 999999999999999999995 4555543 3666666999877644
No 16
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=98.87 E-value=1.3e-09 Score=79.25 Aligned_cols=54 Identities=20% Similarity=0.340 Sum_probs=34.1
Q ss_pred CCCCcEEEEEecCCCCeeEEEEEeCCCcEEEEeecCCCCccccccCCCCCCCHhHHHHHHHHHHHHHHHHHhC
Q psy12876 6 LTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNAYEWTESQHNPHSHDDIISARFFSDWFIDKARLN 78 (115)
Q Consensus 6 L~~~f~v~a~s~d~~~~fv~aie~~~~pi~gvQfHPE~~~~e~~~~~~~~hs~~~~~~~q~l~~fFv~~ar~~ 78 (115)
++.+..++|+++++. .++++++ +.|++|||||||++ ++.|.+ |.+-|++.|.+|
T Consensus 154 v~~~~~~~a~~~~g~-~~~~~v~--~~~v~GvQFHPE~s------------~~~G~~----ll~nFl~~~ge~ 207 (211)
T 4gud_A 154 MPVGDYTIAQCEYGQ-PFSAAIQ--AGNYYGVQFHPERS------------SKAGAR----LIQNFLELRGEN 207 (211)
T ss_dssp CCCCTTEEEEEESSS-EEEEEEE--ETTEEEESSCGGGS------------HHHHHH----HHHHHHHC----
T ss_pred eCCCCeEEEEecCCC-eEEEEEe--CCCEEEEEccCEec------------CccHHH----HHHHHHHHhccc
Confidence 455677888887654 4556655 45799999999983 344543 555566888765
No 17
>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima}
Probab=98.86 E-value=2.2e-09 Score=77.84 Aligned_cols=60 Identities=18% Similarity=0.183 Sum_probs=41.8
Q ss_pred CCCcEEEEEecC--CCCeeEEEEEeCCCcEEEEeecCCCCccccccCCCCCCCHhHHHHHHHHHHHHHHHHH
Q psy12876 7 TETWNILTLSKY--KSWEFVSTVEHKEYPIVGIQFHPEKNAYEWTESQHNPHSHDDIISARFFSDWFIDKAR 76 (115)
Q Consensus 7 ~~~f~v~a~s~d--~~~~fv~aie~~~~pi~gvQfHPE~~~~e~~~~~~~~hs~~~~~~~q~l~~fFv~~ar 76 (115)
|+++.++|++++ +...-|+|+++++.+++|||||||+....|.. +..+ +.|++-|++.|+
T Consensus 151 ~~~~~~~a~~~~~ng~~~~i~a~~~~~~~~~gvQfHPE~~~~~~~~------~~~g----~~l~~~f~~~~~ 212 (213)
T 3d54_D 151 DDVNVVLRYVKDVNGSDERIAGVLNESGNVFGLMPHPERAVEELIG------GEDG----KKVFQSILNYLK 212 (213)
T ss_dssp SCCEEEEEESSCSSCCGGGEEEEECSSSCEEEECSCSTTTTSTTTT------CSTT----SHHHHHHHHHCC
T ss_pred CCCcEEEEEcCCCCCCccceeEEEcCCCCEEEEeCCHHHhcCHhhh------cCcc----HHHHHHHHHHhh
Confidence 467889999865 41112999999888999999999998654421 2223 347777777774
No 18
>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics; 1.90A {Methanocaldococcus jannaschii}
Probab=98.82 E-value=5.4e-09 Score=74.75 Aligned_cols=50 Identities=12% Similarity=0.313 Sum_probs=39.4
Q ss_pred CC-CCCcEEEEEecCCCCeeEEEEEeCCCcEEEEeecCCCCccccccCCCCCCCHhHHHHHHHHHHHHHHHHHh
Q psy12876 5 GL-TETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNAYEWTESQHNPHSHDDIISARFFSDWFIDKARL 77 (115)
Q Consensus 5 ~L-~~~f~v~a~s~d~~~~fv~aie~~~~pi~gvQfHPE~~~~e~~~~~~~~hs~~~~~~~q~l~~fFv~~ar~ 77 (115)
.| |++++++|++ |+. ++|++++ +++|+|||||+. ++ + ..|++.|++.|++
T Consensus 135 ~l~~~~~~v~a~s-d~~---~~a~~~~--~~~gvQfHPE~~-----------~~--g----~~l~~~F~~~~~~ 185 (186)
T 2ywj_A 135 KILSDDVEVIARD-GDK---IVGVKQG--KYMALSFHPELS-----------ED--G----YKVYKYFVENCVK 185 (186)
T ss_dssp EECCTTCEEEEEE-TTE---EEEEEET--TEEEESSCGGGS-----------TT--H----HHHHHHHHHHHTC
T ss_pred ecCCCCeEEEEEE-CCE---EEEEeeC--CEEEEECCCCcC-----------Cc--h----hHHHHHHHHHHhh
Confidence 46 8899999999 665 9999985 699999999974 21 2 4578888888864
No 19
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}
Probab=98.79 E-value=4.2e-09 Score=87.91 Aligned_cols=54 Identities=20% Similarity=0.129 Sum_probs=43.3
Q ss_pred CCCcEEEEEecCCCCeeEEEEEeCCCc-EEEEeecCCCCccccccCCCCCCCHhHHHHHHHHHHHHHHHHHh
Q psy12876 7 TETWNILTLSKYKSWEFVSTVEHKEYP-IVGIQFHPEKNAYEWTESQHNPHSHDDIISARFFSDWFIDKARL 77 (115)
Q Consensus 7 ~~~f~v~a~s~d~~~~fv~aie~~~~p-i~gvQfHPE~~~~e~~~~~~~~hs~~~~~~~q~l~~fFv~~ar~ 77 (115)
+++|+++|+++|+. |||+|++++| ++|||||||....+.. + ..|+..|++.|+.
T Consensus 480 ~~GL~vsA~s~DG~---IEAIE~~~~pf~vGVQfHPE~~~~p~~-----~---------~~LF~~Fv~Aa~~ 534 (535)
T 3nva_A 480 DAGLVVSGISENGL---VEIIELPSNKFFVATQAHPEFKSRPTN-----P---------SPIYLGFIRAVAS 534 (535)
T ss_dssp HTTCEEEEECTTCC---EEEEECTTSSCEEEESSCGGGGCCSSS-----C---------CHHHHHHHHHHTC
T ss_pred cCCeEEEEEeCCCC---EEEEEeCCCCcEEEEEeCCEecCCCCC-----h---------hHHHHHHHHHHHh
Confidence 47899999999888 9999999999 5899999998643211 1 2388889998853
No 20
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*
Probab=98.75 E-value=5.6e-09 Score=87.34 Aligned_cols=55 Identities=20% Similarity=0.169 Sum_probs=44.2
Q ss_pred CCCcEEEEEecCC-CCeeEEEEEeCCCcEE-EEeecCCCCccccccCCCCCCCHhHHHHHHHHHHHHHHHHHhC
Q psy12876 7 TETWNILTLSKYK-SWEFVSTVEHKEYPIV-GIQFHPEKNAYEWTESQHNPHSHDDIISARFFSDWFIDKARLN 78 (115)
Q Consensus 7 ~~~f~v~a~s~d~-~~~fv~aie~~~~pi~-gvQfHPE~~~~e~~~~~~~~hs~~~~~~~q~l~~fFv~~ar~~ 78 (115)
+++++++|++.|+ . |++++++++|++ |||||||+...+ ++ ...|++-|++.|+.+
T Consensus 483 ~~gl~v~a~s~dg~~---VEaie~~~~p~flGVQFHPE~~~~p--------~~------g~~LF~~Fv~aa~~~ 539 (545)
T 1s1m_A 483 DAGLRVAGRSGDDQL---VEIIEVPNHPWFVACQFHPEFTSTP--------RD------GHPLFAGFVKAASEF 539 (545)
T ss_dssp HTTCEEEEECSSSCC---EEEEECTTSSSEEEESSCGGGTCCT--------TT------CCHHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCc---eEEEEeCCCCEEEEEeCCCCCCCCC--------CC------hHHHHHHHHHHHHHH
Confidence 3789999999877 6 999999999987 999999997543 21 134888888888753
No 21
>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A
Probab=98.70 E-value=9.1e-09 Score=86.14 Aligned_cols=58 Identities=19% Similarity=0.148 Sum_probs=44.1
Q ss_pred CCcEEEEEecCCC---CeeEEEEEeCCCcEE-EEeecCCCCccccccCCCCCCCHhHHHHHHHHHHHHHHHHHhCC
Q psy12876 8 ETWNILTLSKYKS---WEFVSTVEHKEYPIV-GIQFHPEKNAYEWTESQHNPHSHDDIISARFFSDWFIDKARLNN 79 (115)
Q Consensus 8 ~~f~v~a~s~d~~---~~fv~aie~~~~pi~-gvQfHPE~~~~e~~~~~~~~hs~~~~~~~q~l~~fFv~~ar~~~ 79 (115)
++++++|++.|+. ..+|++++++++|++ |||||||+...+ ++ ...|++-|++.|+.++
T Consensus 486 ~gl~v~a~s~dG~g~~~~~VeaIe~~~~p~fvGVQFHPE~~~~p--------~~------g~~LF~~Fv~aa~~~~ 547 (550)
T 1vco_A 486 AGLVVSATTPGMRGRGAGLVEAIELKDHPFFLGLQSHPEFKSRP--------MR------PSPPFVGFVEAALAYQ 547 (550)
T ss_dssp HTEEEEEECCCBTTBSTTCEEEEEETTSSSEEEESSCGGGGCBT--------TB------CCHHHHHHHHHHHHHT
T ss_pred CCeEEEEEeCCCCccCCCcEEEEEeCCCCEEEEEEeCCccCCCC--------CC------hHHHHHHHHHHHHhhc
Confidence 6899999998741 225999999999988 999999997543 21 1248888888887653
No 22
>1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A 2wjz_B
Probab=98.59 E-value=2.4e-08 Score=72.11 Aligned_cols=49 Identities=27% Similarity=0.359 Sum_probs=37.3
Q ss_pred CcEEEEEecC-C-CCeeEEEEEeCCCcEEEEeecCCCCccccccCCCCCCCHhHHHHHHHHHHHHHHHHHh
Q psy12876 9 TWNILTLSKY-K-SWEFVSTVEHKEYPIVGIQFHPEKNAYEWTESQHNPHSHDDIISARFFSDWFIDKARL 77 (115)
Q Consensus 9 ~f~v~a~s~d-~-~~~fv~aie~~~~pi~gvQfHPE~~~~e~~~~~~~~hs~~~~~~~q~l~~fFv~~ar~ 77 (115)
+++++|++++ + . ++|+++++ +++|||||||+. . .. ...|++.|++.|+.
T Consensus 149 ~~~vla~s~~~g~~---~~a~~~~~-~i~gvQfHPE~~-~-----------~~----~~~l~~~f~~~~~~ 199 (201)
T 1gpw_B 149 EEHVLGTTEYDGEI---FPSAVRKG-RILGFQFHPEKS-S-----------KI----GRKLLEKVIECSLS 199 (201)
T ss_dssp GGGEEEEEEETTEE---EEEEEEET-TEEEESSCGGGS-H-----------HH----HHHHHHHHHHHSSC
T ss_pred CCEEEEEEccCCce---EEEEEECC-CEEEEECCCccc-C-----------Hh----HHHHHHHHHHHhhc
Confidence 5789999875 5 5 88998876 899999999985 1 12 34577888888754
No 23
>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A*
Probab=98.57 E-value=6.6e-08 Score=82.12 Aligned_cols=36 Identities=19% Similarity=0.147 Sum_probs=32.1
Q ss_pred CCCCCcEEEEEecCCCCeeEEEEEeCCCcEEEEeecCCCCc
Q psy12876 5 GLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNA 45 (115)
Q Consensus 5 ~L~~~f~v~a~s~d~~~~fv~aie~~~~pi~gvQfHPE~~~ 45 (115)
.||++++++|++.|+. |+++++++ ++|||||||+..
T Consensus 583 ~lp~g~~v~A~s~dg~---i~Ai~~~~--~~GVQFHPE~~~ 618 (645)
T 3r75_A 583 DGVGTVAISRDPRTGE---VHALRGPT--FSSMQFHAESVL 618 (645)
T ss_dssp TTTEEEEEEECTTTCB---EEEEEETT--EEEESSBTTSTT
T ss_pred cCCCCeEEEEEcCCCc---EEEEEcCC--EEEEEeCCeecC
Confidence 5889999999998887 99999986 699999999963
No 24
>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1
Probab=98.50 E-value=1.6e-07 Score=70.31 Aligned_cols=35 Identities=23% Similarity=0.164 Sum_probs=31.6
Q ss_pred CCCCCcEEEEEecCCCCeeEEEEEeCCCcEEEEeecCCCC
Q psy12876 5 GLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKN 44 (115)
Q Consensus 5 ~L~~~f~v~a~s~d~~~~fv~aie~~~~pi~gvQfHPE~~ 44 (115)
.||++++++|+++|+. ++|+++++ ++|||||||+.
T Consensus 155 ~lp~~~~vlA~s~~~~---iea~~~~~--i~gvQfHPE~~ 189 (239)
T 1o1y_A 155 DLPRRATRVFTSEKYE---NQGFVYGK--AVGLQFHIEVG 189 (239)
T ss_dssp CCCTTCEEEEECSSCS---CSEEEETT--EEEESSBSSCC
T ss_pred ccCCCCEEEEEcCCCC---EEEEEECC--EEEEEeCccCC
Confidence 5789999999998888 89999986 99999999984
No 25
>2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=98.48 E-value=1.7e-07 Score=66.83 Aligned_cols=48 Identities=21% Similarity=0.293 Sum_probs=36.8
Q ss_pred CCCCCcEEEEEecCCCCeeEEEEEeCCCcEEEEeecCCCCccccccCCCCCCCHhHHHHHHHHHHHHHHHHH
Q psy12876 5 GLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNAYEWTESQHNPHSHDDIISARFFSDWFIDKAR 76 (115)
Q Consensus 5 ~L~~~f~v~a~s~d~~~~fv~aie~~~~pi~gvQfHPE~~~~e~~~~~~~~hs~~~~~~~q~l~~fFv~~ar 76 (115)
.+|++++++|++ |+. ++++++++ ++|+|||||... + + .|++.|++.|+
T Consensus 143 ~l~~~~~~~a~~-~~~---~~a~~~~~--~~gvQfHPE~~~-----------~--~-----~l~~~f~~~~~ 190 (191)
T 2ywd_A 143 RLGEGVEVLARL-GDL---PVLVRQGK--VLASSFHPELTE-----------D--P-----RLHRYFLELAG 190 (191)
T ss_dssp EECTTCEEEEEE-TTE---EEEEEETT--EEEESSCGGGSS-----------C--C-----HHHHHHHHHHT
T ss_pred ccCCCcEEEEEE-CCE---EEEEEECC--EEEEEeCCCCCC-----------C--c-----HHHHHHHHHhc
Confidence 467889999999 544 99999875 999999999741 1 1 27777888875
No 26
>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*
Probab=98.39 E-value=5.2e-07 Score=64.83 Aligned_cols=49 Identities=16% Similarity=0.317 Sum_probs=37.3
Q ss_pred CCCCCcEEEEEecCCCCeeEEEEEeCCCcEEEEeecCCCCccccccCCCCCCCHhHHHHHHHHHHHHHHHHHh
Q psy12876 5 GLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNAYEWTESQHNPHSHDDIISARFFSDWFIDKARL 77 (115)
Q Consensus 5 ~L~~~f~v~a~s~d~~~~fv~aie~~~~pi~gvQfHPE~~~~e~~~~~~~~hs~~~~~~~q~l~~fFv~~ar~ 77 (115)
.+|++++++|++ |+. ++|+++. +++|+|||||.. .+ ..+++.|++.|++
T Consensus 141 ~~~~~~~v~a~~-d~~---~~a~~~~--~~~gvQfHPE~~-----------~~-------~~l~~~fl~~~~~ 189 (196)
T 2nv0_A 141 EAGENVEVLSEH-NGR---IVAAKQG--QFLGCSFHPELT-----------ED-------HRVTQLFVEMVEE 189 (196)
T ss_dssp EECTTCEEEEEE-TTE---EEEEEET--TEEEESSCTTSS-----------SC-------CHHHHHHHHHHHH
T ss_pred ccCCCcEEEEEE-CCE---EEEEEEC--CEEEEEECCccC-----------Cc-------hHHHHHHHHHHHh
Confidence 357889999998 555 8999874 699999999984 11 1277777888875
No 27
>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*
Probab=98.38 E-value=2.6e-07 Score=70.04 Aligned_cols=36 Identities=14% Similarity=0.038 Sum_probs=32.6
Q ss_pred CCCCCcEEEEEecCCCCeeEEEEEeCCCcEEEEeecCCCC
Q psy12876 5 GLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKN 44 (115)
Q Consensus 5 ~L~~~f~v~a~s~d~~~~fv~aie~~~~pi~gvQfHPE~~ 44 (115)
.||++++++|+++++. ++|+++++ +++|||||||+.
T Consensus 145 ~lp~~~~vlA~s~~~~---~~a~~~~~-~~~GvQfHPE~~ 180 (250)
T 3m3p_A 145 SIPPGAVHILRSEHCA---NQAYVLDD-LHIGFQCHIEMQ 180 (250)
T ss_dssp CCCTTEEEEEEETTEE---EEEEEETT-TEEEESSCTTCC
T ss_pred ecCCCCEEEEEeCCCC---EEEEEECC-eeEEEEeCCcCC
Confidence 5899999999998887 99999977 599999999985
No 28
>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1
Probab=98.37 E-value=4.5e-07 Score=66.67 Aligned_cols=49 Identities=14% Similarity=0.343 Sum_probs=38.0
Q ss_pred CCCCCcEEEEEecCCCCeeEEEEEeCCCcEEEEeecCCCCccccccCCCCCCCHhHHHHHHHHHHHHHHHHHh
Q psy12876 5 GLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNAYEWTESQHNPHSHDDIISARFFSDWFIDKARL 77 (115)
Q Consensus 5 ~L~~~f~v~a~s~d~~~~fv~aie~~~~pi~gvQfHPE~~~~e~~~~~~~~hs~~~~~~~q~l~~fFv~~ar~ 77 (115)
.||++++++|.+ |+. ++|+++. +++|+|||||.. .+ ..|++.|++.|++
T Consensus 163 ~l~~~~~v~a~s-dg~---~ea~~~~--~i~GvQfHPE~~-----------~~-------~~l~~~fl~~~~~ 211 (219)
T 1q7r_A 163 EAGDGVDVLATY-NDR---IVAARQG--QFLGCSFHPELT-----------DD-------HRLMQYFLNMVKE 211 (219)
T ss_dssp EECTTCEEEEEE-TTE---EEEEEET--TEEEESSCGGGS-----------SC-------CHHHHHHHHHHHH
T ss_pred ccCCCcEEEEEc-CCE---EEEEEEC--CEEEEEECcccC-----------CC-------HHHHHHHHHHHHH
Confidence 467899999998 665 8999984 699999999984 11 1277778888865
No 29
>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans}
Probab=98.30 E-value=4.3e-07 Score=67.54 Aligned_cols=37 Identities=19% Similarity=0.180 Sum_probs=32.2
Q ss_pred CCCCCCcEEEEEecCCCCeeEEEEEeCCCcEEEEeecCCCC
Q psy12876 4 YGLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKN 44 (115)
Q Consensus 4 ~~L~~~f~v~a~s~d~~~~fv~aie~~~~pi~gvQfHPE~~ 44 (115)
..||++++++|++.++. ++++++++ +++|+|||||+.
T Consensus 147 ~~lp~~~~vla~s~~~~---~~a~~~~~-~v~gvQfHPE~~ 183 (236)
T 3l7n_A 147 PGLPDKAQVLAISQGCP---RQIIKFGP-KQYAFQCHLEFT 183 (236)
T ss_dssp CCCCTTCEEEEECSSCS---CSEEEEET-TEEEESSBSSCC
T ss_pred ccCCChheEEEECCCCC---EEEEEECC-CEEEEEeCCCCC
Confidence 46889999999998887 88988865 899999999984
No 30
>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima}
Probab=98.28 E-value=5e-07 Score=65.83 Aligned_cols=33 Identities=24% Similarity=0.257 Sum_probs=27.9
Q ss_pred CCCCcEEEEEecCCCCeeEEEEEeCCCcEEEEeecCCCC
Q psy12876 6 LTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKN 44 (115)
Q Consensus 6 L~~~f~v~a~s~d~~~~fv~aie~~~~pi~gvQfHPE~~ 44 (115)
+|++++++|.+ |+. +++++.. +++|+|||||..
T Consensus 162 ~~~~~~v~a~~-d~~---~~a~~~~--~i~GvQfHPE~~ 194 (208)
T 2iss_D 162 TGKNVEILATY-DYD---PVLVKEG--NILACTFHPELT 194 (208)
T ss_dssp ECSSCEEEEEE-TTE---EEEEEET--TEEEESSCGGGS
T ss_pred CCCCcEEEEEE-CCE---EEEEEEC--CEEEEEeCCCcC
Confidence 57889999998 555 8999875 699999999985
No 31
>2abw_A PDX2 protein, glutaminase; PLP-synthase, vitamin B6, malaria, transferase; HET: PG4; 1.62A {Plasmodium falciparum} SCOP: c.23.16.1 PDB: 4ads_G
Probab=98.26 E-value=9e-07 Score=65.10 Aligned_cols=49 Identities=22% Similarity=0.396 Sum_probs=36.9
Q ss_pred CCCcEEEEEec-----CCCCeeEEEEEeCCCcEEEEeecCCCCccccccCCCCCCCHhHHHHHHHHHHHHHHHHHhC
Q psy12876 7 TETWNILTLSK-----YKSWEFVSTVEHKEYPIVGIQFHPEKNAYEWTESQHNPHSHDDIISARFFSDWFIDKARLN 78 (115)
Q Consensus 7 ~~~f~v~a~s~-----d~~~~fv~aie~~~~pi~gvQfHPE~~~~e~~~~~~~~hs~~~~~~~q~l~~fFv~~ar~~ 78 (115)
|++++++|++. |+. ++|++.. +++|+|||||+. ++ ..|++.|++.|++.
T Consensus 163 ~~~~~vla~~~~~~~g~~~---~~a~~~~--~v~gvQfHPE~~-----------~~-------~~l~~~Fl~~~~~~ 216 (227)
T 2abw_A 163 SDEVKVLATFSHESYGPNI---IAAVEQN--NCLGTVFHPELL-----------PH-------TAFQQYFYEKVKNY 216 (227)
T ss_dssp CTTCEEEEEEEETTTEEEE---EEEEEET--TEEEESSCGGGS-----------SC-------CHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcccccCCCCc---eEEEEEC--CEEEEEECCeeC-----------CC-------cHHHHHHHHHHHhh
Confidence 78899999986 344 8899874 599999999984 22 12777788888643
No 32
>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1
Probab=98.18 E-value=7.4e-07 Score=64.37 Aligned_cols=30 Identities=30% Similarity=0.552 Sum_probs=21.4
Q ss_pred EEEEEecC-CCCeeEEEEEeCCCcEEEEeecCCCC
Q psy12876 11 NILTLSKY-KSWEFVSTVEHKEYPIVGIQFHPEKN 44 (115)
Q Consensus 11 ~v~a~s~d-~~~~fv~aie~~~~pi~gvQfHPE~~ 44 (115)
++ |++.+ +. + ++++.+++ +++|||||||+.
T Consensus 152 ~v-a~s~~~g~-~-~~~~~~~~-~i~gvQfHPE~~ 182 (200)
T 1ka9_H 152 SL-GKGEYEGT-P-FTALLAKE-NLLAPQFHPEKS 182 (200)
T ss_dssp CC-EEEEETTE-E-EEEEEECS-SEEEESSCTTSS
T ss_pred cE-EEEEeCCe-E-EEEEEeeC-CEEEEecCCCcC
Confidence 56 77765 41 3 45555555 899999999995
No 33
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A
Probab=97.80 E-value=8e-06 Score=67.98 Aligned_cols=36 Identities=36% Similarity=0.504 Sum_probs=27.2
Q ss_pred CCCcEEEEEecCCCCeeEEEEEeCCCcEEEEeecCCCC
Q psy12876 7 TETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKN 44 (115)
Q Consensus 7 ~~~f~v~a~s~d~~~~fv~aie~~~~pi~gvQfHPE~~ 44 (115)
|+++.++|++..+...++++++. .+++|+|||||+.
T Consensus 165 ~~g~~vlA~s~~~~D~~i~ai~~--~~i~GvQFHPE~s 200 (555)
T 1jvn_A 165 ENDGWKIAKAKYGSEEFIAAVNK--NNIFATQFHPEKS 200 (555)
T ss_dssp HHTTCEEEEEEETTEEEEEEEEE--TTEEEESSBGGGS
T ss_pred CCCCEEEEEEcCCCCCeEEEEEe--CCEEEEEeCcEec
Confidence 56688889886321246999995 4799999999973
No 34
>2vdj_A Homoserine O-succinyltransferase; methionine biosynthesis, amino-acid biosynthesis, homoserine transacetylase, homoserine transsuccinylase; 2.00A {Bacillus cereus} PDB: 2ghr_A
Probab=96.76 E-value=0.0012 Score=51.29 Aligned_cols=33 Identities=24% Similarity=0.040 Sum_probs=29.5
Q ss_pred CcEEEEEecCCCCeeEEEEEeCCCcEEEEeecCCCC
Q psy12876 9 TWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKN 44 (115)
Q Consensus 9 ~f~v~a~s~d~~~~fv~aie~~~~pi~gvQfHPE~~ 44 (115)
+.+++|.|+.++ +.++..++..++|+|+|||..
T Consensus 207 ga~vLA~S~~~~---~~~~~~~~~~~~~vQgHpEyd 239 (301)
T 2vdj_A 207 ELTLLANSEEAG---VHLVIGQEGRQVFALGHSEYS 239 (301)
T ss_dssp TEEEEEEETTTE---EEEEEEGGGTEEEECSCTTCC
T ss_pred CCEEEEeCCCCc---ceEEEecCCCEEEEECCCCCC
Confidence 899999999888 899988666799999999984
No 35
>2h2w_A Homoserine O-succinyltransferase; TM0881, (EC 2.3.1.46), HOM O-transsuccinylase, HTS, (TM0881), structural genomics; 2.52A {Thermotoga maritima}
Probab=96.62 E-value=0.0019 Score=50.54 Aligned_cols=34 Identities=26% Similarity=0.222 Sum_probs=29.3
Q ss_pred CCcEEEEEecCCCCeeEEEEEeCCCcEEEEeecCCCC
Q psy12876 8 ETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKN 44 (115)
Q Consensus 8 ~~f~v~a~s~d~~~~fv~aie~~~~pi~gvQfHPE~~ 44 (115)
++.+++|.|+.++ +.++..++..++|+|+|||..
T Consensus 217 pga~vLA~S~~~~---~q~~~~~~~~~~~vQgHPEyd 250 (312)
T 2h2w_A 217 PELEILAESDEAG---VYVVANKSERQIFVTGHPEYD 250 (312)
T ss_dssp C-CEEEEEETTTE---EEEEECSSSSEEEECSCTTCC
T ss_pred CCCEEEEcCCCCc---ceEEEecCCCEEEEECCCCCC
Confidence 4899999999888 899998777799999999984
No 36
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=45.64 E-value=13 Score=27.58 Aligned_cols=24 Identities=25% Similarity=0.481 Sum_probs=19.4
Q ss_pred CeeEEEEEeCCCcEEEEeecCCCC
Q psy12876 21 WEFVSTVEHKEYPIVGIQFHPEKN 44 (115)
Q Consensus 21 ~~fv~aie~~~~pi~gvQfHPE~~ 44 (115)
+.|..+....++|||++.|.|...
T Consensus 4 m~~~~~~~~~g~PV~sv~fs~dg~ 27 (365)
T 4h5i_A 4 MKFVTASYNVGYPAYGAKFLNNDT 27 (365)
T ss_dssp CCCCEEEEECSSCEEEEEEEETTE
T ss_pred ccceeeecCCCCCEEEEEEeCCCc
Confidence 456777777889999999999854
No 37
>3ugj_A Phosphoribosylformylglycinamidine synthase; amidotransferase, glutaminase, thioester intermediate, ligas; HET: ADP; 1.78A {Salmonella enterica subsp} PDB: 1t3t_A* 3ujn_A* 3umm_A*
Probab=28.49 E-value=34 Score=31.40 Aligned_cols=27 Identities=15% Similarity=0.176 Sum_probs=23.8
Q ss_pred EEEEEeCCCcEEEEeecCCCCcccccc
Q psy12876 24 VSTVEHKEYPIVGIQFHPEKNAYEWTE 50 (115)
Q Consensus 24 v~aie~~~~pi~gvQfHPE~~~~e~~~ 50 (115)
|+||-..+..++|..-|||+....|..
T Consensus 1252 IaGi~s~~Grvlg~MpHPEr~~~~~~~ 1278 (1303)
T 3ugj_A 1252 ITAVTTENGRVTIMMPHPERVFRTVAN 1278 (1303)
T ss_dssp EEEEECTTSSEEEESSBGGGSSBGGGC
T ss_pred ceEeECCCCCEEEEcCChHHccccccc
Confidence 899999999999999999998776643
No 38
>4gl6_A Hypothetical protein; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS biology; 2.55A {Ruminococcus gnavus}
Probab=27.02 E-value=1.6e+02 Score=21.20 Aligned_cols=38 Identities=18% Similarity=0.404 Sum_probs=28.5
Q ss_pred CCCcEEEEEe------cCCCCeeEEEEEe--CCCcEEEEeecCCCC
Q psy12876 7 TETWNILTLS------KYKSWEFVSTVEH--KEYPIVGIQFHPEKN 44 (115)
Q Consensus 7 ~~~f~v~a~s------~d~~~~fv~aie~--~~~pi~gvQfHPE~~ 44 (115)
++.|+|++++ .|++-.+...|.. .++|+-|--|.||-.
T Consensus 19 geefevlswnqpkllpsdngaiyatci~k~dpkhpfegsyf~pee~ 64 (247)
T 4gl6_A 19 GEEFEVLSWNQPKLLPSDNGAIYATCISKNDPKHPFEGSYFNPEEP 64 (247)
T ss_dssp SSCEEEEEEECCCSSTTCCCCEEEEEEETTSTTSCEEEEEECCSST
T ss_pred cceeeeeecCCCccccCCCCcEEEEeeccCCCCCCCCCcccCCCCC
Confidence 5779999998 2666556666654 357899999999874
Done!