RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12876
(115 letters)
>1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1
Length = 315
Score = 107 bits (268), Expect = 1e-29
Identities = 36/109 (33%), Positives = 65/109 (59%), Gaps = 1/109 (0%)
Query: 6 LTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNAYEWTESQHNPHSHDDIISAR 65
L + +N+LT + EF+ST+E +YP+ G+Q+HPEK YEW H+ + + +A
Sbjct: 207 LKKFFNVLTTNTDGKIEFISTMEGYKYPVYGVQWHPEKAPYEWKNLDGISHAPNAVKTAF 266
Query: 66 FFSDWFIDKARLNNNSFASRDDLYKSLIQNYPNVMSYPNKLGFEQIYLF 114
+ +++F+++AR NN+ F S + K+LI + + + F+Q Y+F
Sbjct: 267 YLAEFFVNEARKNNHHFKSESEEEKALIYQFSPIYTGNIS-SFQQCYIF 314
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan
biosynthesis, glutamine amidotransferase, allosteric
interaction, lyase; 2.50A {Sulfolobus solfataricus}
SCOP: c.23.16.1
Length = 195
Score = 41.7 bits (99), Expect = 9e-06
Identities = 11/16 (68%), Positives = 14/16 (87%)
Query: 27 VEHKEYPIVGIQFHPE 42
+ H+EYPI G+QFHPE
Sbjct: 162 IHHEEYPIYGVQFHPE 177
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase;
HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1
PDB: 1i7q_B 1i7s_B*
Length = 192
Score = 40.9 bits (97), Expect = 1e-05
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 27 VEHKEYPIVGIQFHPE 42
V H + G QFHPE
Sbjct: 156 VRHDADRVCGFQFHPE 171
>1gpw_B Amidotransferase HISH; lyase/transferase, complex
(lyase/transferase), histidine biosynthesis,
glutaminase, glutamine amidotransferase; 2.4A
{Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A
2wjz_B
Length = 201
Score = 37.1 bits (87), Expect = 4e-04
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 4 YGLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEK 43
+ E ++L ++Y F S V I+G QFHPEK
Sbjct: 144 RAVCEEEHVLGTTEYDGEIFPSAVRKGR--ILGFQFHPEK 181
>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II,
structural genomics, protein structure initiative; 2.30A
{Listeria innocua}
Length = 254
Score = 37.3 bits (87), Expect = 4e-04
Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 15/52 (28%)
Query: 27 VEHKEYP--IVGIQFHPEKNAYEWTESQHNPHSHDDIISARFFSDWFIDKAR 76
VE P +G+Q+HPE D S + F +D+++
Sbjct: 203 VEGDNLPSWYLGVQWHPELMF------------QTDPESEQLF-QALVDESK 241
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf;
substrate channeling, amidotransferase, TIM-barrel AS A
SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae}
SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A
1ox4_A
Length = 555
Score = 37.1 bits (86), Expect = 5e-04
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 11 NILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEK 43
+ +KY S EF++ V I QFHPEK
Sbjct: 169 WKIAKAKYGSEEFIAAVNKNN--IFATQFHPEK 199
>1ka9_H Imidazole glycerol phosphtate synthase; riken structural
genomics/proteomics initiative, RSGI, structural
genomics, transferase; 2.30A {Thermus thermophilus}
SCOP: c.23.16.1
Length = 200
Score = 34.8 bits (81), Expect = 0.003
Identities = 10/40 (25%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 4 YGLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEK 43
YG +++ +Y+ F + + + ++ QFHPEK
Sbjct: 145 YGPLTPYSLGK-GEYEGTPFTALLAKE--NLLAPQFHPEK 181
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine
nucleotide biosy process, ligase; HET: XMP; 2.72A
{Plasmodium falciparum}
Length = 556
Score = 32.2 bits (74), Expect = 0.027
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 27 VEHKEYPIVGIQFHPE 42
+ +KEY I G+Q+HPE
Sbjct: 196 IYNKEYNIYGVQYHPE 211
>2a9v_A GMP synthase; structural genomics, joint center for structural
genomics, J protein structure initiative, PSI-2, ligase;
2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1
Length = 212
Score = 31.3 bits (72), Expect = 0.036
Identities = 9/16 (56%), Positives = 9/16 (56%)
Query: 27 VEHKEYPIVGIQFHPE 42
HK PI QFHPE
Sbjct: 166 FYHKTRPIYATQFHPE 181
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene,
phosphoprotein, GMP synthetase, guanine monophosphate
synthetase, chromosomal rearrangement; HET: XMP; 2.5A
{Homo sapiens}
Length = 697
Score = 30.7 bits (70), Expect = 0.088
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 24 VSTVEHKEYPIVGIQFHPE 42
V+ + ++ + G QFHPE
Sbjct: 178 VAGIANESKKLYGAQFHPE 196
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella
burnetii}
Length = 527
Score = 30.1 bits (69), Expect = 0.11
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 27 VEHKEYPIVGIQFHPE 42
+ + G+QFHPE
Sbjct: 171 MADFKRRFFGLQFHPE 186
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase,
N-type ATP pyrophosphata transferase (glutamine
amidotransferase); HET: AMP CIT; 2.20A {Escherichia
coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Length = 525
Score = 30.1 bits (69), Expect = 0.11
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 27 VEHKEYPIVGIQFHPE 42
+ ++E G+QFHPE
Sbjct: 168 MANEEKRFYGVQFHPE 183
>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel,
chorismate, type 1 glutamine amidotransfera phenazine
biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP}
PDB: 3r74_A* 3r76_A*
Length = 645
Score = 29.8 bits (67), Expect = 0.15
Identities = 5/19 (26%), Positives = 7/19 (36%), Gaps = 2/19 (10%)
Query: 24 VSTVEHKEYPIVGIQFHPE 42
V + +QFH E
Sbjct: 599 VHALRGP--TFSSMQFHAE 615
>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP
synthetase, GMP biosynthesis, glutamine
amidotransferase, ligase, cytoplasm; 2.40A {Homo
sapiens}
Length = 218
Score = 29.8 bits (68), Expect = 0.15
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 27 VEHKEYPIVGIQFHPE 42
+ ++ + G QFHPE
Sbjct: 176 IANESKKLYGAQFHPE 191
>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase,
thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP:
c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B*
1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B*
Length = 379
Score = 29.7 bits (68), Expect = 0.15
Identities = 5/20 (25%), Positives = 9/20 (45%), Gaps = 3/20 (15%)
Query: 26 TVE---HKEYPIVGIQFHPE 42
T++ + P Q +PE
Sbjct: 335 TLQGIHRTDKPAFSFQGNPE 354
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding,
ATP binding, purine nucleotide biosynthetic pathway,
structural genomics; 2.10A {Thermus thermophilus} PDB:
2ywc_A*
Length = 503
Score = 29.7 bits (68), Expect = 0.17
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 24 VSTVEHKEYPIVGIQFHPE 42
V+ + + G+QFHPE
Sbjct: 148 VAAIASPDGRAYGVQFHPE 166
>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold,
structural genomics, joint center for structural
genomics, JCSG; 1.70A {Thermotoga maritima} SCOP:
c.23.16.1
Length = 239
Score = 28.6 bits (64), Expect = 0.32
Identities = 11/66 (16%), Positives = 23/66 (34%), Gaps = 9/66 (13%)
Query: 34 IVGIQFHPE---KNAYEWTESQHNPHSHDDIISARFFSDWFIDKARLNNNSFASR-DDLY 89
VG+QFH E + W E D++ + ++ A L
Sbjct: 179 AVGLQFHIEVGARTMKRWIE-----AYKDELEKKKIDPRLLLETAEREEKVLKGLLRSLL 233
Query: 90 KSLIQN 95
+ ++++
Sbjct: 234 ERMVES 239
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.7 bits (63), Expect = 0.51
Identities = 15/89 (16%), Positives = 28/89 (31%), Gaps = 19/89 (21%)
Query: 10 WNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNA----YEWTESQHNPHSHDDIISAR 65
W +L+ + +FV V Y + E+ Q + +D+ +
Sbjct: 69 WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN----Q 124
Query: 66 FFSDWFIDKARLNNNSFASRDDLYKSLIQ 94
F+ + + SR Y L Q
Sbjct: 125 VFAKYNV-----------SRLQPYLKLRQ 142
>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics
initiative, RSGI, structural genomics, ligase; HET: GLN;
2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10
PDB: 1vcn_A 1vcm_A
Length = 550
Score = 28.2 bits (64), Expect = 0.57
Identities = 9/27 (33%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 17 KYKSWEFVSTVEHKEYP-IVGIQFHPE 42
+ + V +E K++P +G+Q HPE
Sbjct: 498 RGRGAGLVEAIELKDHPFFLGLQSHPE 524
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming),
cytidine 5 triphosphate synthase, ammonia lyase; 2.30A
{Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB:
2ad5_A*
Length = 545
Score = 28.2 bits (64), Expect = 0.62
Identities = 9/20 (45%), Positives = 11/20 (55%), Gaps = 1/20 (5%)
Query: 24 VSTVEHKEYP-IVGIQFHPE 42
V +E +P V QFHPE
Sbjct: 498 VEIIEVPNHPWFVACQFHPE 517
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A
{Sulfolobus solfataricus}
Length = 535
Score = 27.4 bits (62), Expect = 1.0
Identities = 7/20 (35%), Positives = 8/20 (40%), Gaps = 1/20 (5%)
Query: 24 VSTVEHKEYP-IVGIQFHPE 42
V +E V Q HPE
Sbjct: 494 VEIIELPSNKFFVATQAHPE 513
>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase,
gatases, riken structural genomics/proteomics
initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP:
c.23.16.1 PDB: 2d7j_A
Length = 189
Score = 26.9 bits (60), Expect = 1.6
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 24 VSTVEHKEYPIVGIQFHPE 42
+ ++H+E PI G+QFHPE
Sbjct: 150 IEAMKHEELPIYGVQFHPE 168
>3l7n_A Putative uncharacterized protein; glutamine amidotransferase,
transferas; 2.70A {Streptococcus mutans}
Length = 236
Score = 26.7 bits (59), Expect = 1.9
Identities = 3/9 (33%), Positives = 3/9 (33%)
Query: 34 IVGIQFHPE 42
Q H E
Sbjct: 173 QYAFQCHLE 181
>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2;
HET: MSE; 1.30A {Methylobacillus flagellatus} PDB:
3l83_A*
Length = 250
Score = 26.3 bits (58), Expect = 2.1
Identities = 4/9 (44%), Positives = 5/9 (55%)
Query: 34 IVGIQFHPE 42
+G Q H E
Sbjct: 170 HIGFQCHIE 178
>2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis,
structural genomics, NPPSFA; 1.90A {Thermus
thermophilus}
Length = 191
Score = 25.3 bits (55), Expect = 4.8
Identities = 4/11 (36%), Positives = 6/11 (54%)
Query: 34 IVGIQFHPEKN 44
++ FHPE
Sbjct: 166 VLASSFHPELT 176
>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel,
alpha/beta three layer sandwich, lyase transferase; HET:
5RP; 2.90A {Thermotoga maritima}
Length = 208
Score = 25.1 bits (55), Expect = 5.0
Identities = 5/11 (45%), Positives = 6/11 (54%)
Query: 34 IVGIQFHPEKN 44
I+ FHPE
Sbjct: 184 ILACTFHPELT 194
>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich,
rossmann fold, glutaminase; 1.73A {Bacillus subtilis}
SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*
Length = 196
Score = 25.0 bits (55), Expect = 6.1
Identities = 5/11 (45%), Positives = 6/11 (54%)
Query: 34 IVGIQFHPEKN 44
+G FHPE
Sbjct: 164 FLGCSFHPELT 174
>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2,
predicted glutamine amidotransferase, PSI; HET: MSE;
1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1
Length = 219
Score = 24.8 bits (54), Expect = 6.8
Identities = 7/34 (20%), Positives = 12/34 (35%), Gaps = 4/34 (11%)
Query: 11 NILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKN 44
+ L+ Y + + +G FHPE
Sbjct: 167 GVDVLATYN--DRIVAARQG--QFLGCSFHPELT 196
>2v4u_A CTP synthase 2; pyrimidine biosynthesis, glutamine
amidotransferase, glutaminase domain,
5-OXO-L-norleucine, DON, ligase, phosphoprotein; HET:
CYD; 2.3A {Homo sapiens} PDB: 2vkt_A
Length = 289
Score = 24.8 bits (54), Expect = 8.9
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 6/36 (16%)
Query: 22 EFVSTVEHKEYP-IVGIQFHPEKNAYEWTESQHNPH 56
+ + +E +P VG+QFHP E++ P
Sbjct: 234 DRMEIIELANHPYFVGVQFHP-----EFSSRPMKPS 264
>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved
protein, structural genomics; 1.90A {Methanocaldococcus
jannaschii}
Length = 186
Score = 24.2 bits (53), Expect = 9.4
Identities = 4/12 (33%), Positives = 7/12 (58%)
Query: 34 IVGIQFHPEKNA 45
+ + FHPE +
Sbjct: 159 YMALSFHPELSE 170
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.134 0.425
Gapped
Lambda K H
0.267 0.0814 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,805,422
Number of extensions: 91916
Number of successful extensions: 212
Number of sequences better than 10.0: 1
Number of HSP's gapped: 211
Number of HSP's successfully gapped: 37
Length of query: 115
Length of database: 6,701,793
Length adjustment: 78
Effective length of query: 37
Effective length of database: 4,523,955
Effective search space: 167386335
Effective search space used: 167386335
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.3 bits)