RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12876
         (115 letters)



>d1l9xa_ c.23.16.1 (A:) gamma-glutamyl hydrolase {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 288

 Score = 96.5 bits (239), Expect = 4e-26
 Identities = 37/109 (33%), Positives = 66/109 (60%), Gaps = 1/109 (0%)

Query: 6   LTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNAYEWTESQHNPHSHDDIISAR 65
           L + +N+LT +     EF+ST+E  +YP+ G+Q+HPEK  YEW       H+ + + +A 
Sbjct: 180 LKKFFNVLTTNTDGKIEFISTMEGYKYPVYGVQWHPEKAPYEWKNLDGISHAPNAVKTAF 239

Query: 66  FFSDWFIDKARLNNNSFASRDDLYKSLIQNYPNVMSYPNKLGFEQIYLF 114
           + +++F+++AR NN+ F S  +  K+LI  +  + +  N   F+Q Y+F
Sbjct: 240 YLAEFFVNEARKNNHHFKSESEEEKALIYQFSPIYT-GNISSFQQCYIF 287


>d1jvna2 c.23.16.1 (A:-3-229) GAT subunit, HisH, (or domain) of
           imidazoleglycerolphosphate synthase HisF {Baker's yeast
           (Saccharomyces cerevisiae), His7 [TaxId: 4932]}
          Length = 232

 Score = 35.7 bits (81), Expect = 5e-04
 Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 8   ETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEK 43
                +  +KY S EF++ V      I   QFHPEK
Sbjct: 166 NDGWKIAKAKYGSEEFIAAVNKN--NIFATQFHPEK 199


>d1a9xb2 c.23.16.1 (B:1653-1880) Carbamoyl phosphate synthetase,
           small subunit C-terminal domain {Escherichia coli
           [TaxId: 562]}
          Length = 228

 Score = 33.2 bits (75), Expect = 0.004
 Identities = 6/36 (16%), Positives = 11/36 (30%), Gaps = 8/36 (22%)

Query: 27  VEHKEYPIVGIQFHPEKNAYEWTESQHNPHSHDDII 62
           +   + P    Q +P        E+   PH    + 
Sbjct: 188 IHRTDKPAFSFQGNP--------EASPGPHDAAPLF 215


>d1k9vf_ c.23.16.1 (F:) GAT subunit, HisH, (or domain) of
           imidazoleglycerolphosphate synthase HisF {Thermotoga
           maritima [TaxId: 2336]}
          Length = 200

 Score = 32.7 bits (73), Expect = 0.005
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 2/43 (4%)

Query: 1   MIKYGLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEK 43
                + E  ++L  ++Y    F S V      I+G QFHPEK
Sbjct: 141 HTYRAVCEEEHVLGTTEYDGEIFPSAVRKG--RILGFQFHPEK 181


>d1i7qb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG
           {Serratia marcescens [TaxId: 615]}
          Length = 192

 Score = 31.4 bits (70), Expect = 0.013
 Identities = 7/16 (43%), Positives = 8/16 (50%)

Query: 27  VEHKEYPIVGIQFHPE 42
           V      + G QFHPE
Sbjct: 156 VRDDRRRVCGFQFHPE 171


>d1qdlb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG
           {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
          Length = 195

 Score = 31.0 bits (69), Expect = 0.019
 Identities = 11/16 (68%), Positives = 14/16 (87%)

Query: 27  VEHKEYPIVGIQFHPE 42
           + H+EYPI G+QFHPE
Sbjct: 162 IHHEEYPIYGVQFHPE 177


>d1s1ma1 c.23.16.1 (A:287-544) CTP synthase PyrG, C-terminal domain
           {Escherichia coli [TaxId: 562]}
          Length = 258

 Score = 29.6 bits (66), Expect = 0.058
 Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 1/34 (2%)

Query: 10  WNILTLSKYKSWEFVSTVEHKEYP-IVGIQFHPE 42
             +    +    + V  +E   +P  V  QFHPE
Sbjct: 198 AGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPE 231


>d2abwa1 c.23.16.1 (A:2-219) Pyridoxine biosynthesis protein 2, Pdx2
           {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}
          Length = 218

 Score = 29.5 bits (65), Expect = 0.060
 Identities = 7/22 (31%), Positives = 10/22 (45%), Gaps = 2/22 (9%)

Query: 22  EFVSTVEHKEYPIVGIQFHPEK 43
             ++ VE      +G  FHPE 
Sbjct: 179 NIIAAVEQN--NCLGTVFHPEL 198


>d1ka9h_ c.23.16.1 (H:) GAT subunit, HisH, (or domain) of
           imidazoleglycerolphosphate synthase HisF {Thermus
           thermophilus [TaxId: 274]}
          Length = 195

 Score = 29.6 bits (65), Expect = 0.062
 Identities = 8/26 (30%), Positives = 14/26 (53%), Gaps = 2/26 (7%)

Query: 18  YKSWEFVSTVEHKEYPIVGIQFHPEK 43
           Y+   F + +  +   ++  QFHPEK
Sbjct: 156 YEGTPFTALLAKE--NLLAPQFHPEK 179


>d1gpma2 c.23.16.1 (A:3-207) GMP synthetase {Escherichia coli
           [TaxId: 562]}
          Length = 205

 Score = 29.5 bits (65), Expect = 0.062
 Identities = 7/17 (41%), Positives = 11/17 (64%)

Query: 27  VEHKEYPIVGIQFHPEK 43
           + ++E    G+QFHPE 
Sbjct: 166 MANEEKRFYGVQFHPEV 182


>d2a9va1 c.23.16.1 (A:1-196) GMP synthase subunit A, GuaAA {Archaeon
           Thermoplasma acidophilum [TaxId: 2303]}
          Length = 196

 Score = 29.5 bits (65), Expect = 0.068
 Identities = 9/16 (56%), Positives = 9/16 (56%)

Query: 27  VEHKEYPIVGIQFHPE 42
             HK  PI   QFHPE
Sbjct: 154 FYHKTRPIYATQFHPE 169


>d1wl8a1 c.23.16.1 (A:1-188) GMP synthase subunit A, GuaAA {Archaeon
           Pyrococcus horikoshii [TaxId: 53953]}
          Length = 188

 Score = 29.2 bits (64), Expect = 0.073
 Identities = 10/17 (58%), Positives = 14/17 (82%)

Query: 27  VEHKEYPIVGIQFHPEK 43
           ++H+E PI G+QFHPE 
Sbjct: 153 MKHEELPIYGVQFHPEV 169


>d1vcoa1 c.23.16.1 (A:298-547) CTP synthase PyrG, C-terminal domain
           {Thermus thermophilus [TaxId: 274]}
          Length = 250

 Score = 28.1 bits (62), Expect = 0.23
 Identities = 9/27 (33%), Positives = 16/27 (59%), Gaps = 1/27 (3%)

Query: 17  KYKSWEFVSTVEHKEYP-IVGIQFHPE 42
           + +    V  +E K++P  +G+Q HPE
Sbjct: 201 RGRGAGLVEAIELKDHPFFLGLQSHPE 227


>d2nv0a1 c.23.16.1 (A:1-195) Hypothetical protein YaaE {Bacillus
           subtilis [TaxId: 1423]}
          Length = 195

 Score = 26.4 bits (57), Expect = 0.90
 Identities = 5/11 (45%), Positives = 6/11 (54%)

Query: 33  PIVGIQFHPEK 43
             +G  FHPE 
Sbjct: 163 QFLGCSFHPEL 173


>d1q7ra_ c.23.16.1 (A:) Hypothetical protein YaaE {Bacillus
           stearothermophilus [TaxId: 1422]}
          Length = 202

 Score = 25.3 bits (54), Expect = 2.2
 Identities = 5/11 (45%), Positives = 6/11 (54%)

Query: 33  PIVGIQFHPEK 43
             +G  FHPE 
Sbjct: 168 QFLGCSFHPEL 178


>d1o1ya_ c.23.16.1 (A:) Hypothetical protein TM1158 {Thermotoga
           maritima [TaxId: 2336]}
          Length = 230

 Score = 24.2 bits (51), Expect = 4.2
 Identities = 7/33 (21%), Positives = 11/33 (33%)

Query: 10  WNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPE 42
                 ++  + E            VG+QFH E
Sbjct: 146 DLPRRATRVFTSEKYENQGFVYGKAVGLQFHIE 178


>d1pj3a2 c.58.1.3 (A:21-279) Mitochondrial NAD(P)-dependent malic
           enzyme {Human (Homo sapiens) [TaxId: 9606]}
          Length = 259

 Score = 23.6 bits (51), Expect = 6.9
 Identities = 5/18 (27%), Positives = 8/18 (44%)

Query: 22  EFVSTVEHKEYPIVGIQF 39
           EF+  +  +      IQF
Sbjct: 217 EFMKAITDRYGRNTLIQF 234


>d3bzka1 a.60.2.6 (A:474-563) Transcriptional accessory factor Tex
          {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 90

 Score = 22.7 bits (49), Expect = 8.8
 Identities = 8/19 (42%), Positives = 11/19 (57%)

Query: 72 IDKARLNNNSFASRDDLYK 90
          I   R  N +F +RD+L K
Sbjct: 51 IVAHRDANGAFRTRDELKK 69


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.134    0.425 

Gapped
Lambda     K      H
   0.267   0.0692    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 461,115
Number of extensions: 19375
Number of successful extensions: 72
Number of sequences better than 10.0: 1
Number of HSP's gapped: 70
Number of HSP's successfully gapped: 27
Length of query: 115
Length of database: 2,407,596
Length adjustment: 73
Effective length of query: 42
Effective length of database: 1,405,306
Effective search space: 59022852
Effective search space used: 59022852
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.0 bits)