BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12877
(814 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IB7|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB7|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB7|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB7|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
Length = 395
Score = 461 bits (1186), Expect = e-130, Method: Compositional matrix adjust.
Identities = 218/322 (67%), Positives = 264/322 (81%), Gaps = 1/322 (0%)
Query: 1 MGNVCQAGLGQAPCRQAVIFAGLPKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMVA 60
MGNV Q G GQAP RQAV+ AGLP ST CTT+NKVCASGMKAIM+ASQ+L GHQDVMVA
Sbjct: 59 MGNVLQGGEGQAPTRQAVLGAGLPISTPCTTINKVCASGMKAIMMASQSLMCGHQDVMVA 118
Query: 61 GGMESMSNVPFYLNRGETKYGGMNLIDGIVYDGLSDVYNKIHMGNCAENTAKKFNISRDE 120
GGMESMSNVP+ +NRG T YGG+ L D IV DGL+DVYNKIHMG+CAENTAKK NI+R+E
Sbjct: 119 GGMESMSNVPYVMNRGSTPYGGVKLEDLIVKDGLTDVYNKIHMGSCAENTAKKLNIARNE 178
Query: 121 QDEYALSSYKKSADAYKNNVFSSQIVPVSIPQRKGKADIIVNEDEEYKKINFEKFKSLAT 180
QD YA++SY +S A++ F ++++PV++ KG+ D++V EDEEYK+++F K L T
Sbjct: 179 QDAYAINSYTRSKAAWEAGKFGNEVIPVTV-TVKGQPDVVVKEDEEYKRVDFSKVPKLKT 237
Query: 181 VFQKENGTVTAGNASTLNDGAAACVLMTEEAVRKFNAKPLARIIAYFDAATEPIDFPIAP 240
VFQKENGTVTA NASTLNDGAAA VLMT +A ++ N PLARI+A+ DAA EPIDFPIAP
Sbjct: 238 VFQKENGTVTAANASTLNDGAAALVLMTADAAKRLNVTPLARIVAFADAAVEPIDFPIAP 297
Query: 241 AFAIPTLLKNGGVAKQDVALWEINEAFSVVVLANIKKLDIDPSKVNVHGGAVSLGHPIGM 300
+A +LK+ G+ K+D+A+WE+NEAFS+VVLANIK L+IDP KVN++GGAVSLGHPIGM
Sbjct: 298 VYAASMVLKDVGLKKEDIAMWEVNEAFSLVVLANIKMLEIDPQKVNINGGAVSLGHPIGM 357
Query: 301 SGARIVIHLCHALKSGQKGQLS 322
SGARIV HL HALK G+ G S
Sbjct: 358 SGARIVGHLTHALKQGEYGLAS 379
Score = 409 bits (1051), Expect = e-114, Method: Compositional matrix adjust.
Identities = 199/310 (64%), Positives = 245/310 (79%), Gaps = 3/310 (0%)
Query: 373 FASKPG--DVFIVSGSRTPMGSFRSSLVSLSATKLGAVAIESAIQKANMDKSDVQEVYMG 430
ASKP +V IVS +RTP+GSF SL L ATKLG++AI+ AI+KA + K +V+E YMG
Sbjct: 1 MASKPTLKEVVIVSATRTPIGSFLGSLSLLPATKLGSIAIQGAIEKAGIPKEEVKEAYMG 60
Query: 431 NVCQAGLGQAPCRQAVIFAGLPKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMVAGG 490
NV Q G GQAP RQAV+ AGLP ST CTT+NKVCASGMKAIM+ASQ+L GHQDVMVAGG
Sbjct: 61 NVLQGGEGQAPTRQAVLGAGLPISTPCTTINKVCASGMKAIMMASQSLMCGHQDVMVAGG 120
Query: 491 MESMSNVPFYLNRGETKYGGMNLIDGIVYDGLSDVYNKIHMGNCAENTAKKFNISRDEQD 550
MESMSNVP+ +NRG T YGG+ L D IV DGL+DVYNKIHMG+CAENTAKK NI+R+EQD
Sbjct: 121 MESMSNVPYVMNRGSTPYGGVKLEDLIVKDGLTDVYNKIHMGSCAENTAKKLNIARNEQD 180
Query: 551 EYALSSYKKSADAYKNNVFSSQIVPVSIPQRKGKADIIVNEDEEYKKINFEKFKSLATVF 610
YA++SY +S A++ F ++++PV++ KG+ D++V EDEEYK+++F K L TVF
Sbjct: 181 AYAINSYTRSKAAWEAGKFGNEVIPVTV-TVKGQPDVVVKEDEEYKRVDFSKVPKLKTVF 239
Query: 611 QKENGTVTAGNASTLNDGAAACVLMTEEAVRKFNAKPLARIIAYFDAATEPIDFPIAPAF 670
QKENGTVTA NASTLNDGAAA VLMT +A ++ N PLARI+A+ DAA EPIDFPIAP +
Sbjct: 240 QKENGTVTAANASTLNDGAAALVLMTADAAKRLNVTPLARIVAFADAAVEPIDFPIAPVY 299
Query: 671 AIPTLLKNGG 680
A +LK+ G
Sbjct: 300 AASMVLKDVG 309
>pdb|2IBU|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-coa Thiolase (t2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBU|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-coa Thiolase (t2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBU|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-coa Thiolase (t2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBU|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-coa Thiolase (t2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBW|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBW|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBW|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBW|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBY|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBY|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBY|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBY|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
Length = 395
Score = 457 bits (1177), Expect = e-129, Method: Compositional matrix adjust.
Identities = 217/322 (67%), Positives = 263/322 (81%), Gaps = 1/322 (0%)
Query: 1 MGNVCQAGLGQAPCRQAVIFAGLPKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMVA 60
MGNV Q G GQAP RQAV+ AGLP ST CTT+NKV ASGMKAIM+ASQ+L GHQDVMVA
Sbjct: 59 MGNVLQGGEGQAPTRQAVLGAGLPISTPCTTINKVXASGMKAIMMASQSLMCGHQDVMVA 118
Query: 61 GGMESMSNVPFYLNRGETKYGGMNLIDGIVYDGLSDVYNKIHMGNCAENTAKKFNISRDE 120
GGMESMSNVP+ +NRG T YGG+ L D IV DGL+DVYNKIHMG+CAENTAKK NI+R+E
Sbjct: 119 GGMESMSNVPYVMNRGSTPYGGVKLEDLIVKDGLTDVYNKIHMGSCAENTAKKLNIARNE 178
Query: 121 QDEYALSSYKKSADAYKNNVFSSQIVPVSIPQRKGKADIIVNEDEEYKKINFEKFKSLAT 180
QD YA++SY +S A++ F ++++PV++ KG+ D++V EDEEYK+++F K L T
Sbjct: 179 QDAYAINSYTRSKAAWEAGKFGNEVIPVTV-TVKGQPDVVVKEDEEYKRVDFSKVPKLKT 237
Query: 181 VFQKENGTVTAGNASTLNDGAAACVLMTEEAVRKFNAKPLARIIAYFDAATEPIDFPIAP 240
VFQKENGTVTA NASTLNDGAAA VLMT +A ++ N PLARI+A+ DAA EPIDFPIAP
Sbjct: 238 VFQKENGTVTAANASTLNDGAAALVLMTADAAKRLNVTPLARIVAFADAAVEPIDFPIAP 297
Query: 241 AFAIPTLLKNGGVAKQDVALWEINEAFSVVVLANIKKLDIDPSKVNVHGGAVSLGHPIGM 300
+A +LK+ G+ K+D+A+WE+NEAFS+VVLANIK L+IDP KVN++GGAVSLGHPIGM
Sbjct: 298 VYAASMVLKDVGLKKEDIAMWEVNEAFSLVVLANIKMLEIDPQKVNINGGAVSLGHPIGM 357
Query: 301 SGARIVIHLCHALKSGQKGQLS 322
SGARIV HL HALK G+ G S
Sbjct: 358 SGARIVGHLTHALKQGEYGLAS 379
Score = 405 bits (1041), Expect = e-113, Method: Compositional matrix adjust.
Identities = 198/310 (63%), Positives = 244/310 (78%), Gaps = 3/310 (0%)
Query: 373 FASKPG--DVFIVSGSRTPMGSFRSSLVSLSATKLGAVAIESAIQKANMDKSDVQEVYMG 430
ASKP +V IVS +RTP+GSF SL L ATKLG++AI+ AI+KA + K +V+E YMG
Sbjct: 1 MASKPTLKEVVIVSATRTPIGSFLGSLSLLPATKLGSIAIQGAIEKAGIPKEEVKEAYMG 60
Query: 431 NVCQAGLGQAPCRQAVIFAGLPKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMVAGG 490
NV Q G GQAP RQAV+ AGLP ST CTT+NKV ASGMKAIM+ASQ+L GHQDVMVAGG
Sbjct: 61 NVLQGGEGQAPTRQAVLGAGLPISTPCTTINKVXASGMKAIMMASQSLMCGHQDVMVAGG 120
Query: 491 MESMSNVPFYLNRGETKYGGMNLIDGIVYDGLSDVYNKIHMGNCAENTAKKFNISRDEQD 550
MESMSNVP+ +NRG T YGG+ L D IV DGL+DVYNKIHMG+CAENTAKK NI+R+EQD
Sbjct: 121 MESMSNVPYVMNRGSTPYGGVKLEDLIVKDGLTDVYNKIHMGSCAENTAKKLNIARNEQD 180
Query: 551 EYALSSYKKSADAYKNNVFSSQIVPVSIPQRKGKADIIVNEDEEYKKINFEKFKSLATVF 610
YA++SY +S A++ F ++++PV++ KG+ D++V EDEEYK+++F K L TVF
Sbjct: 181 AYAINSYTRSKAAWEAGKFGNEVIPVTV-TVKGQPDVVVKEDEEYKRVDFSKVPKLKTVF 239
Query: 611 QKENGTVTAGNASTLNDGAAACVLMTEEAVRKFNAKPLARIIAYFDAATEPIDFPIAPAF 670
QKENGTVTA NASTLNDGAAA VLMT +A ++ N PLARI+A+ DAA EPIDFPIAP +
Sbjct: 240 QKENGTVTAANASTLNDGAAALVLMTADAAKRLNVTPLARIVAFADAAVEPIDFPIAPVY 299
Query: 671 AIPTLLKNGG 680
A +LK+ G
Sbjct: 300 AASMVLKDVG 309
>pdb|2F2S|A Chain A, Human Mitochondrial Acetoacetyl-Coa Thiolase
pdb|2F2S|B Chain B, Human Mitochondrial Acetoacetyl-Coa Thiolase
pdb|2F2S|C Chain C, Human Mitochondrial Acetoacetyl-Coa Thiolase
pdb|2F2S|D Chain D, Human Mitochondrial Acetoacetyl-Coa Thiolase
Length = 406
Score = 457 bits (1175), Expect = e-128, Method: Compositional matrix adjust.
Identities = 217/322 (67%), Positives = 263/322 (81%), Gaps = 1/322 (0%)
Query: 1 MGNVCQAGLGQAPCRQAVIFAGLPKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMVA 60
MGNV Q G GQAP RQAV+ AGLP ST CTT+NKV ASGMKAIM+ASQ+L GHQDVMVA
Sbjct: 70 MGNVLQGGEGQAPTRQAVLGAGLPISTPCTTINKVXASGMKAIMMASQSLMCGHQDVMVA 129
Query: 61 GGMESMSNVPFYLNRGETKYGGMNLIDGIVYDGLSDVYNKIHMGNCAENTAKKFNISRDE 120
GGMESMSNVP+ +NRG T YGG+ L D IV DGL+DVYNKIHMG+CAENTAKK NI+R+E
Sbjct: 130 GGMESMSNVPYVMNRGSTPYGGVKLEDLIVKDGLTDVYNKIHMGSCAENTAKKLNIARNE 189
Query: 121 QDEYALSSYKKSADAYKNNVFSSQIVPVSIPQRKGKADIIVNEDEEYKKINFEKFKSLAT 180
QD YA++SY +S A++ F ++++PV++ KG+ D++V EDEEYK+++F K L T
Sbjct: 190 QDAYAINSYTRSKAAWEAGKFGNEVIPVTV-TVKGQPDVVVKEDEEYKRVDFSKVPKLKT 248
Query: 181 VFQKENGTVTAGNASTLNDGAAACVLMTEEAVRKFNAKPLARIIAYFDAATEPIDFPIAP 240
VFQKENGTVTA NASTLNDGAAA VLMT +A ++ N PLARI+A+ DAA EPIDFPIAP
Sbjct: 249 VFQKENGTVTAANASTLNDGAAALVLMTADAAKRLNVTPLARIVAFADAAVEPIDFPIAP 308
Query: 241 AFAIPTLLKNGGVAKQDVALWEINEAFSVVVLANIKKLDIDPSKVNVHGGAVSLGHPIGM 300
+A +LK+ G+ K+D+A+WE+NEAFS+VVLANIK L+IDP KVN++GGAVSLGHPIGM
Sbjct: 309 VYAASMVLKDVGLKKEDIAMWEVNEAFSLVVLANIKMLEIDPQKVNINGGAVSLGHPIGM 368
Query: 301 SGARIVIHLCHALKSGQKGQLS 322
SGARIV HL HALK G+ G S
Sbjct: 369 SGARIVGHLTHALKQGEYGLAS 390
Score = 403 bits (1035), Expect = e-112, Method: Compositional matrix adjust.
Identities = 194/302 (64%), Positives = 240/302 (79%), Gaps = 1/302 (0%)
Query: 379 DVFIVSGSRTPMGSFRSSLVSLSATKLGAVAIESAIQKANMDKSDVQEVYMGNVCQAGLG 438
+V IVS +RTP+GSF SL L ATKLG++AI+ AI+KA + K +V+E YMGNV Q G G
Sbjct: 20 EVVIVSATRTPIGSFLGSLSLLPATKLGSIAIQGAIEKAGIPKEEVKEAYMGNVLQGGEG 79
Query: 439 QAPCRQAVIFAGLPKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMVAGGMESMSNVP 498
QAP RQAV+ AGLP ST CTT+NKV ASGMKAIM+ASQ+L GHQDVMVAGGMESMSNVP
Sbjct: 80 QAPTRQAVLGAGLPISTPCTTINKVXASGMKAIMMASQSLMCGHQDVMVAGGMESMSNVP 139
Query: 499 FYLNRGETKYGGMNLIDGIVYDGLSDVYNKIHMGNCAENTAKKFNISRDEQDEYALSSYK 558
+ +NRG T YGG+ L D IV DGL+DVYNKIHMG+CAENTAKK NI+R+EQD YA++SY
Sbjct: 140 YVMNRGSTPYGGVKLEDLIVKDGLTDVYNKIHMGSCAENTAKKLNIARNEQDAYAINSYT 199
Query: 559 KSADAYKNNVFSSQIVPVSIPQRKGKADIIVNEDEEYKKINFEKFKSLATVFQKENGTVT 618
+S A++ F ++++PV++ KG+ D++V EDEEYK+++F K L TVFQKENGTVT
Sbjct: 200 RSKAAWEAGKFGNEVIPVTV-TVKGQPDVVVKEDEEYKRVDFSKVPKLKTVFQKENGTVT 258
Query: 619 AGNASTLNDGAAACVLMTEEAVRKFNAKPLARIIAYFDAATEPIDFPIAPAFAIPTLLKN 678
A NASTLNDGAAA VLMT +A ++ N PLARI+A+ DAA EPIDFPIAP +A +LK+
Sbjct: 259 AANASTLNDGAAALVLMTADAAKRLNVTPLARIVAFADAAVEPIDFPIAPVYAASMVLKD 318
Query: 679 GG 680
G
Sbjct: 319 VG 320
>pdb|4E1L|A Chain A, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
pdb|4E1L|B Chain B, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
pdb|4E1L|C Chain C, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
pdb|4E1L|D Chain D, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
Length = 395
Score = 268 bits (685), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 142/318 (44%), Positives = 202/318 (63%), Gaps = 7/318 (2%)
Query: 1 MGNVCQAGLGQAPCRQAVIFAGLPKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMVA 60
+GNV Q GLGQ RQ I AG+P S TVNK+C SG+K++ LA+Q+++ G DV++A
Sbjct: 56 IGNVLQTGLGQNVARQIAINAGIPNSVPSYTVNKLCGSGLKSVQLAAQSITSGENDVVIA 115
Query: 61 GGMESMSNVPFYL--NRGETKYGGMNLIDGIVYDGLSDVYNKIHMGNCAENTAKKFNISR 118
GG E+MS P+ + R +K G + ++D ++ DGL D +N+ HMG AEN A KF +R
Sbjct: 116 GGTENMSQAPYIVPTARFGSKMGNITMVDSMLTDGLIDAFNQYHMGITAENIATKFEFTR 175
Query: 119 DEQDEYALSSYKKSADAYKNNVFSSQIVPVSIPQRKGKADIIVNEDEEYKKI--NFEKFK 176
+ QD+ AL S K+ +A KNN F +IVPV + R+GK + I + +EY K+ FE
Sbjct: 176 EMQDKLALESQNKAENAIKNNRFKEEIVPVDVLIRRGKIETI--DKDEYPKLGMTFEGLS 233
Query: 177 SLATVFQKENGTVTAGNASTLNDGAAACVLMTEEAVRKFNAKPLARIIAYFDAATEPIDF 236
L F+K+ GTVTAGNAS +NDGAA +LM+++ + +PLA+I +Y A EP
Sbjct: 234 KLKPAFKKD-GTVTAGNASGINDGAAMLILMSQQKADELGIRPLAKIKSYASAGVEPEVM 292
Query: 237 PIAPAFAIPTLLKNGGVAKQDVALWEINEAFSVVVLANIKKLDIDPSKVNVHGGAVSLGH 296
P A LK G++ D+ L E NEAF+ LA +L ID SK+NV+GGA++LGH
Sbjct: 293 GTGPIPATRKALKKAGLSINDIDLIEANEAFAAQALAVKNELQIDSSKLNVNGGAIALGH 352
Query: 297 PIGMSGARIVIHLCHALK 314
PIG SGARI++ L + ++
Sbjct: 353 PIGASGARILVTLIYEMQ 370
Score = 247 bits (630), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 132/306 (43%), Positives = 189/306 (61%), Gaps = 7/306 (2%)
Query: 379 DVFIVSGSRTPMGSFRSSLVSLSATKLGAVAIESAIQKANMDKSDVQEVYMGNVCQAGLG 438
DV IVS RTP+GSF + SA +LG +A++ AI + ++ S++ EV +GNV Q GLG
Sbjct: 6 DVVIVSAVRTPIGSFGGVFKNTSAVQLGTIAVKEAISRVGLNLSEIDEVIIGNVLQTGLG 65
Query: 439 QAPCRQAVIFAGLPKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMVAGGMESMSNVP 498
Q RQ I AG+P S TVNK+C SG+K++ LA+Q+++ G DV++AGG E+MS P
Sbjct: 66 QNVARQIAINAGIPNSVPSYTVNKLCGSGLKSVQLAAQSITSGENDVVIAGGTENMSQAP 125
Query: 499 FYL--NRGETKYGGMNLIDGIVYDGLSDVYNKIHMGNCAENTAKKFNISRDEQDEYALSS 556
+ + R +K G + ++D ++ DGL D +N+ HMG AEN A KF +R+ QD+ AL S
Sbjct: 126 YIVPTARFGSKMGNITMVDSMLTDGLIDAFNQYHMGITAENIATKFEFTREMQDKLALES 185
Query: 557 YKKSADAYKNNVFSSQIVPVSIPQRKGKADIIVNEDEEYKKI--NFEKFKSLATVFQKEN 614
K+ +A KNN F +IVPV + R+GK + I + +EY K+ FE L F+K+
Sbjct: 186 QNKAENAIKNNRFKEEIVPVDVLIRRGKIETI--DKDEYPKLGMTFEGLSKLKPAFKKD- 242
Query: 615 GTVTAGNASTLNDGAAACVLMTEEAVRKFNAKPLARIIAYFDAATEPIDFPIAPAFAIPT 674
GTVTAGNAS +NDGAA +LM+++ + +PLA+I +Y A EP P A
Sbjct: 243 GTVTAGNASGINDGAAMLILMSQQKADELGIRPLAKIKSYASAGVEPEVMGTGPIPATRK 302
Query: 675 LLKNGG 680
LK G
Sbjct: 303 ALKKAG 308
>pdb|4DD5|A Chain A, Biosynthetic Thiolase (Thla1) From Clostridium Difficile
Length = 396
Score = 250 bits (638), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 136/317 (42%), Positives = 195/317 (61%), Gaps = 6/317 (1%)
Query: 1 MGNVCQAGLGQAPCRQAVIFAGLPKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMVA 60
+G V AGLGQ RQ + AG+P T+N VC SG++++ +ASQ ++LG D+M+
Sbjct: 58 LGGVLTAGLGQNIARQIALGAGIPVEKPAMTINIVCGSGLRSVSMASQLIALGDADIMLV 117
Query: 61 GGMESMSNVPFYL--NRGETKYGGMNLIDGIVYDGLSDVYNKIHMGNCAENTAKKFNISR 118
GG E+MS P+ + R + G +D ++ DGLSD++N HMG AEN A+++NI+R
Sbjct: 118 GGAENMSMSPYLVPSARYGARMGDAAFVDSMIKDGLSDIFNNYHMGITAENIAEQWNITR 177
Query: 119 DEQDEYALSSYKKSADAYKNNVFSSQIVPVSIPQRKGKADIIVNEDEEYK-KINFEKFKS 177
+EQDE AL+S K+ A F +IVPV I RKG D +V++DE K EK
Sbjct: 178 EEQDELALASQNKAEKAQAEGKFDEEIVPVVIKGRKG--DTVVDKDEYIKPGTTMEKLAK 235
Query: 178 LATVFQKENGTVTAGNASTLNDGAAACVLMTEEAVRKFNAKPLARIIAYFDAATEPIDFP 237
L F+K+ GTVTAGNAS +NDGAA V+M +E + +PLA I++Y A +P
Sbjct: 236 LRPAFKKD-GTVTAGNASGINDGAAMLVVMAKEKAEELGIEPLATIVSYGTAGVDPKIMG 294
Query: 238 IAPAFAIPTLLKNGGVAKQDVALWEINEAFSVVVLANIKKLDIDPSKVNVHGGAVSLGHP 297
P A L+ + +D+ L E NEAF+ +A I+ L+ID +KVNV+GGA+++GHP
Sbjct: 295 YGPVPATKKALEAANMTIEDIDLVEANEAFAAQSVAVIRDLNIDMNKVNVNGGAIAIGHP 354
Query: 298 IGMSGARIVIHLCHALK 314
IG SGARI+ L + +K
Sbjct: 355 IGCSGARILTTLLYEMK 371
Score = 223 bits (569), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 121/286 (42%), Positives = 175/286 (61%), Gaps = 6/286 (2%)
Query: 379 DVFIVSGSRTPMGSFRSSLVSLSATKLGAVAIESAIQKANMDKSDVQEVYMGNVCQAGLG 438
+V I S +RT +GSF + S+SA +LG A + AI++AN+ + E +G V AGLG
Sbjct: 8 EVVIASAARTAVGSFGGAFKSVSAVELGVTAAKEAIKRANITPDMIDESLLGGVLTAGLG 67
Query: 439 QAPCRQAVIFAGLPKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMVAGGMESMSNVP 498
Q RQ + AG+P T+N VC SG++++ +ASQ ++LG D+M+ GG E+MS P
Sbjct: 68 QNIARQIALGAGIPVEKPAMTINIVCGSGLRSVSMASQLIALGDADIMLVGGAENMSMSP 127
Query: 499 FYL--NRGETKYGGMNLIDGIVYDGLSDVYNKIHMGNCAENTAKKFNISRDEQDEYALSS 556
+ + R + G +D ++ DGLSD++N HMG AEN A+++NI+R+EQDE AL+S
Sbjct: 128 YLVPSARYGARMGDAAFVDSMIKDGLSDIFNNYHMGITAENIAEQWNITREEQDELALAS 187
Query: 557 YKKSADAYKNNVFSSQIVPVSIPQRKGKADIIVNEDEEYK-KINFEKFKSLATVFQKENG 615
K+ A F +IVPV I RKG D +V++DE K EK L F+K+ G
Sbjct: 188 QNKAEKAQAEGKFDEEIVPVVIKGRKG--DTVVDKDEYIKPGTTMEKLAKLRPAFKKD-G 244
Query: 616 TVTAGNASTLNDGAAACVLMTEEAVRKFNAKPLARIIAYFDAATEP 661
TVTAGNAS +NDGAA V+M +E + +PLA I++Y A +P
Sbjct: 245 TVTAGNASGINDGAAMLVVMAKEKAEELGIEPLATIVSYGTAGVDP 290
>pdb|1WL4|A Chain A, Human Cytosolic Acetoacetyl-Coa Thiolase Complexed With
Coa
pdb|1WL5|A Chain A, Human Cytosolic Acetoacetyl-Coa Thiolase
Length = 397
Score = 243 bits (620), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 134/316 (42%), Positives = 189/316 (59%), Gaps = 5/316 (1%)
Query: 2 GNVCQAGLGQAPCRQAVIFAGLPKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMVAG 61
G+V AG GQ P RQA + AG+P S + + SG+KA+ LA Q++ +G ++VAG
Sbjct: 58 GHVLAAGCGQNPVRQASVGAGIPYSVPAWSCQMIXGSGLKAVCLAVQSIGIGDSSIVVAG 117
Query: 62 GMESMSNVPF--YLNRGETKYGGMNLIDGIVYDGLSDVYNKIHMGNCAENTAKKFNISRD 119
GME+MS P YL G K G M L D I+ DGL+D ++ HMG AEN AKK+ +SR+
Sbjct: 118 GMENMSKAPHLAYLRTG-VKIGEMPLTDSILCDGLTDAFHNCHMGITAENVAKKWQVSRE 176
Query: 120 EQDEYALSSYKKSADAYKNNVFSSQIVPVSIPQRKGKADIIVNEDEEYKKINFEKFKSLA 179
+QD+ A+ S ++ +A K F +IVPV + RKG ++ +E + N E L
Sbjct: 177 DQDKVAVLSQNRTENAQKAGHFDKEIVPVLVSTRKGLIEVKTDEFPRHGS-NIEAMSKLK 235
Query: 180 TVFQKE-NGTVTAGNASTLNDGAAACVLMTEEAVRKFNAKPLARIIAYFDAATEPIDFPI 238
F + GTVT NAS +NDGAAA VLM + K PLARI+++ EP I
Sbjct: 236 PYFLTDGTGTVTPANASGINDGAAAVVLMKKSEADKRGLTPLARIVSWSQVGVEPSIMGI 295
Query: 239 APAFAIPTLLKNGGVAKQDVALWEINEAFSVVVLANIKKLDIDPSKVNVHGGAVSLGHPI 298
P AI + G + +DV ++EINEAF+ V A +K+L ++P KVN+ GGA++LGHP+
Sbjct: 296 GPIPAIKQAVTKAGWSLEDVDIFEINEAFAAVSAAIVKELGLNPEKVNIEGGAIALGHPL 355
Query: 299 GMSGARIVIHLCHALK 314
G SG RI++ L H L+
Sbjct: 356 GASGCRILVTLLHTLE 371
Score = 211 bits (536), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 124/312 (39%), Positives = 174/312 (55%), Gaps = 7/312 (2%)
Query: 372 NFASKPGDVFIVSGSRTPMGSFRSSLVSLSATKLGAVAIESAIQKANMDKSDVQEVYMGN 431
N S P V IVS +RT +GSF +L ++ LG+ I+ +++A + DV EV G+
Sbjct: 2 NAGSDP--VVIVSAARTIIGSFNGALAAVPVQDLGSTVIKEVLKRATVAPEDVSEVIFGH 59
Query: 432 VCQAGLGQAPCRQAVIFAGLPKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMVAGGM 491
V AG GQ P RQA + AG+P S + + SG+KA+ LA Q++ +G ++VAGGM
Sbjct: 60 VLAAGCGQNPVRQASVGAGIPYSVPAWSCQMIXGSGLKAVCLAVQSIGIGDSSIVVAGGM 119
Query: 492 ESMSNVPF--YLNRGETKYGGMNLIDGIVYDGLSDVYNKIHMGNCAENTAKKFNISRDEQ 549
E+MS P YL G K G M L D I+ DGL+D ++ HMG AEN AKK+ +SR++Q
Sbjct: 120 ENMSKAPHLAYLRTG-VKIGEMPLTDSILCDGLTDAFHNCHMGITAENVAKKWQVSREDQ 178
Query: 550 DEYALSSYKKSADAYKNNVFSSQIVPVSIPQRKGKADIIVNEDEEYKKINFEKFKSLATV 609
D+ A+ S ++ +A K F +IVPV + RKG ++ +E + N E L
Sbjct: 179 DKVAVLSQNRTENAQKAGHFDKEIVPVLVSTRKGLIEVKTDEFPRHGS-NIEAMSKLKPY 237
Query: 610 FQKE-NGTVTAGNASTLNDGAAACVLMTEEAVRKFNAKPLARIIAYFDAATEPIDFPIAP 668
F + GTVT NAS +NDGAAA VLM + K PLARI+++ EP I P
Sbjct: 238 FLTDGTGTVTPANASGINDGAAAVVLMKKSEADKRGLTPLARIVSWSQVGVEPSIMGIGP 297
Query: 669 AFAIPTLLKNGG 680
AI + G
Sbjct: 298 IPAIKQAVTKAG 309
>pdb|2VU2|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex With S-
Pantetheine-11-pivalate.
pdb|2VU2|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex With S-
Pantetheine-11-pivalate.
pdb|2VU2|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex With S-
Pantetheine-11-pivalate.
pdb|2VU2|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex With S-
Pantetheine-11-pivalate
Length = 392
Score = 241 bits (615), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 135/316 (42%), Positives = 185/316 (58%), Gaps = 5/316 (1%)
Query: 1 MGNVCQAGLGQAPCRQAVIFAGLPKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMVA 60
+G V AG GQ P RQA + AG+P+ +N++C SG++A+ L Q ++ G ++VA
Sbjct: 54 LGQVLPAGEGQNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVA 113
Query: 61 GGMESMSNVPFYLN-RGETKYGGMNLIDGIVYDGLSDVYNKIHMGNCAENTAKKFNISRD 119
GGMESMS P + RG K G +ID ++ DGL+D + HMG AEN AK++ +SRD
Sbjct: 114 GGMESMSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRD 173
Query: 120 EQDEYALSSYKKSADAYKNNVFSSQIVPVSIPQRKGKADIIVNEDEEYKK-INFEKFKSL 178
EQD +A++S K+ A K+ F +IVP + RKG DI V+ DE + + L
Sbjct: 174 EQDAFAVASQNKAEAAQKDGRFKDEIVPFIVKGRKG--DITVDADEYIRHGATLDSMAKL 231
Query: 179 ATVFQKENGTVTAGNASTLNDGAAACVLMTEEAVRKFNAKPLARIIAYFDAATEPIDFPI 238
F KE GTVTAGNAS LNDGAAA +LM+E + +PL RI+++ +P
Sbjct: 232 RPAFDKE-GTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGT 290
Query: 239 APAFAIPTLLKNGGVAKQDVALWEINEAFSVVVLANIKKLDIDPSKVNVHGGAVSLGHPI 298
P A L+ G D+ L E NEAF+ A K L DPS VNV+GGA+++GHPI
Sbjct: 291 GPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPI 350
Query: 299 GMSGARIVIHLCHALK 314
G SGARI+ L +K
Sbjct: 351 GASGARILNTLLFEMK 366
Score = 220 bits (560), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 116/284 (40%), Positives = 169/284 (59%), Gaps = 5/284 (1%)
Query: 380 VFIVSGSRTPMGSFRSSLVSLSATKLGAVAIESAIQKANMDKSDVQEVYMGNVCQAGLGQ 439
+ I S +RT +GSF + + A +LGA I + +++A + +V EV +G V AG GQ
Sbjct: 5 IVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQ 64
Query: 440 APCRQAVIFAGLPKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMVAGGMESMSNVPF 499
P RQA + AG+P+ +N++C SG++A+ L Q ++ G ++VAGGMESMS P
Sbjct: 65 NPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMAPH 124
Query: 500 YLN-RGETKYGGMNLIDGIVYDGLSDVYNKIHMGNCAENTAKKFNISRDEQDEYALSSYK 558
+ RG K G +ID ++ DGL+D + HMG AEN AK++ +SRDEQD +A++S
Sbjct: 125 CAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQN 184
Query: 559 KSADAYKNNVFSSQIVPVSIPQRKGKADIIVNEDEEYKK-INFEKFKSLATVFQKENGTV 617
K+ A K+ F +IVP + RKG DI V+ DE + + L F KE GTV
Sbjct: 185 KAEAAQKDGRFKDEIVPFIVKGRKG--DITVDADEYIRHGATLDSMAKLRPAFDKE-GTV 241
Query: 618 TAGNASTLNDGAAACVLMTEEAVRKFNAKPLARIIAYFDAATEP 661
TAGNAS LNDGAAA +LM+E + +PL RI+++ +P
Sbjct: 242 TAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDP 285
>pdb|1DLU|A Chain A, Unliganded Biosynthetic Thiolase From Zoogloea Ramigera
pdb|1DLU|B Chain B, Unliganded Biosynthetic Thiolase From Zoogloea Ramigera
pdb|1DLU|C Chain C, Unliganded Biosynthetic Thiolase From Zoogloea Ramigera
pdb|1DLU|D Chain D, Unliganded Biosynthetic Thiolase From Zoogloea Ramigera
pdb|1DLV|A Chain A, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Coa
pdb|1DLV|B Chain B, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Coa
pdb|1DLV|C Chain C, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Coa
pdb|1DLV|D Chain D, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Coa
Length = 389
Score = 241 bits (615), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 135/316 (42%), Positives = 185/316 (58%), Gaps = 5/316 (1%)
Query: 1 MGNVCQAGLGQAPCRQAVIFAGLPKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMVA 60
+G V AG GQ P RQA + AG+P+ +N++C SG++A+ L Q ++ G ++VA
Sbjct: 51 LGQVLPAGEGQNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVA 110
Query: 61 GGMESMSNVPFYLN-RGETKYGGMNLIDGIVYDGLSDVYNKIHMGNCAENTAKKFNISRD 119
GGMESMS P + RG K G +ID ++ DGL+D + HMG AEN AK++ +SRD
Sbjct: 111 GGMESMSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRD 170
Query: 120 EQDEYALSSYKKSADAYKNNVFSSQIVPVSIPQRKGKADIIVNEDEEYKK-INFEKFKSL 178
EQD +A++S K+ A K+ F +IVP + RKG DI V+ DE + + L
Sbjct: 171 EQDAFAVASQNKAEAAQKDGRFKDEIVPFIVKGRKG--DITVDADEYIRHGATLDSMAKL 228
Query: 179 ATVFQKENGTVTAGNASTLNDGAAACVLMTEEAVRKFNAKPLARIIAYFDAATEPIDFPI 238
F KE GTVTAGNAS LNDGAAA +LM+E + +PL RI+++ +P
Sbjct: 229 RPAFDKE-GTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGT 287
Query: 239 APAFAIPTLLKNGGVAKQDVALWEINEAFSVVVLANIKKLDIDPSKVNVHGGAVSLGHPI 298
P A L+ G D+ L E NEAF+ A K L DPS VNV+GGA+++GHPI
Sbjct: 288 GPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPI 347
Query: 299 GMSGARIVIHLCHALK 314
G SGARI+ L +K
Sbjct: 348 GASGARILNTLLFEMK 363
Score = 220 bits (561), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 120/303 (39%), Positives = 174/303 (57%), Gaps = 5/303 (1%)
Query: 380 VFIVSGSRTPMGSFRSSLVSLSATKLGAVAIESAIQKANMDKSDVQEVYMGNVCQAGLGQ 439
+ I S +RT +GSF + + A +LGA I + +++A + +V EV +G V AG GQ
Sbjct: 2 IVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQ 61
Query: 440 APCRQAVIFAGLPKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMVAGGMESMSNVPF 499
P RQA + AG+P+ +N++C SG++A+ L Q ++ G ++VAGGMESMS P
Sbjct: 62 NPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMAPH 121
Query: 500 YLN-RGETKYGGMNLIDGIVYDGLSDVYNKIHMGNCAENTAKKFNISRDEQDEYALSSYK 558
+ RG K G +ID ++ DGL+D + HMG AEN AK++ +SRDEQD +A++S
Sbjct: 122 CAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQN 181
Query: 559 KSADAYKNNVFSSQIVPVSIPQRKGKADIIVNEDEEYKK-INFEKFKSLATVFQKENGTV 617
K+ A K+ F +IVP + RKG DI V+ DE + + L F KE GTV
Sbjct: 182 KAEAAQKDGRFKDEIVPFIVKGRKG--DITVDADEYIRHGATLDSMAKLRPAFDKE-GTV 238
Query: 618 TAGNASTLNDGAAACVLMTEEAVRKFNAKPLARIIAYFDAATEPIDFPIAPAFAIPTLLK 677
TAGNAS LNDGAAA +LM+E + +PL RI+++ +P P A L+
Sbjct: 239 TAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRKALE 298
Query: 678 NGG 680
G
Sbjct: 299 RAG 301
>pdb|2WKV|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316d Mutant With Coenzyme A.
pdb|2WKV|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316d Mutant With Coenzyme A.
pdb|2WKV|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316d Mutant With Coenzyme A.
pdb|2WKV|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316d Mutant With Coenzyme A
Length = 392
Score = 239 bits (611), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 134/316 (42%), Positives = 185/316 (58%), Gaps = 5/316 (1%)
Query: 1 MGNVCQAGLGQAPCRQAVIFAGLPKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMVA 60
+G V AG GQ P RQA + AG+P+ +N++C SG++A+ L Q ++ G ++VA
Sbjct: 54 LGQVLPAGEGQNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVA 113
Query: 61 GGMESMSNVPFYLN-RGETKYGGMNLIDGIVYDGLSDVYNKIHMGNCAENTAKKFNISRD 119
GGMESMS P + RG K G +ID ++ DGL+D + HMG AEN AK++ +SRD
Sbjct: 114 GGMESMSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRD 173
Query: 120 EQDEYALSSYKKSADAYKNNVFSSQIVPVSIPQRKGKADIIVNEDEEYKK-INFEKFKSL 178
EQD +A++S K+ A K+ F +IVP + RKG DI V+ DE + + L
Sbjct: 174 EQDAFAVASQNKAEAAQKDGRFKDEIVPFIVKGRKG--DITVDADEYIRHGATLDSMAKL 231
Query: 179 ATVFQKENGTVTAGNASTLNDGAAACVLMTEEAVRKFNAKPLARIIAYFDAATEPIDFPI 238
F KE GTVTAGNAS LNDGAAA +LM+E + +PL RI+++ +P
Sbjct: 232 RPAFDKE-GTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGT 290
Query: 239 APAFAIPTLLKNGGVAKQDVALWEINEAFSVVVLANIKKLDIDPSKVNVHGGAVSLGHPI 298
P A L+ G D+ L E +EAF+ A K L DPS VNV+GGA+++GHPI
Sbjct: 291 GPIPASRKALERAGWKIGDLDLVEADEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPI 350
Query: 299 GMSGARIVIHLCHALK 314
G SGARI+ L +K
Sbjct: 351 GASGARILNTLLFEMK 366
Score = 220 bits (561), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 116/284 (40%), Positives = 169/284 (59%), Gaps = 5/284 (1%)
Query: 380 VFIVSGSRTPMGSFRSSLVSLSATKLGAVAIESAIQKANMDKSDVQEVYMGNVCQAGLGQ 439
+ I S +RT +GSF + + A +LGA I + +++A + +V EV +G V AG GQ
Sbjct: 5 IVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQ 64
Query: 440 APCRQAVIFAGLPKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMVAGGMESMSNVPF 499
P RQA + AG+P+ +N++C SG++A+ L Q ++ G ++VAGGMESMS P
Sbjct: 65 NPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMAPH 124
Query: 500 YLN-RGETKYGGMNLIDGIVYDGLSDVYNKIHMGNCAENTAKKFNISRDEQDEYALSSYK 558
+ RG K G +ID ++ DGL+D + HMG AEN AK++ +SRDEQD +A++S
Sbjct: 125 CAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQN 184
Query: 559 KSADAYKNNVFSSQIVPVSIPQRKGKADIIVNEDEEYKK-INFEKFKSLATVFQKENGTV 617
K+ A K+ F +IVP + RKG DI V+ DE + + L F KE GTV
Sbjct: 185 KAEAAQKDGRFKDEIVPFIVKGRKG--DITVDADEYIRHGATLDSMAKLRPAFDKE-GTV 241
Query: 618 TAGNASTLNDGAAACVLMTEEAVRKFNAKPLARIIAYFDAATEP 661
TAGNAS LNDGAAA +LM+E + +PL RI+++ +P
Sbjct: 242 TAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDP 285
>pdb|2WKU|A Chain A, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant.
pdb|2WKU|B Chain B, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant.
pdb|2WKU|C Chain C, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant.
pdb|2WKU|D Chain D, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant
Length = 392
Score = 239 bits (610), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 134/316 (42%), Positives = 185/316 (58%), Gaps = 5/316 (1%)
Query: 1 MGNVCQAGLGQAPCRQAVIFAGLPKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMVA 60
+G V AG GQ P RQA + AG+P+ +N++C SG++A+ L Q ++ G ++VA
Sbjct: 54 LGQVLPAGEGQNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVA 113
Query: 61 GGMESMSNVPFYLN-RGETKYGGMNLIDGIVYDGLSDVYNKIHMGNCAENTAKKFNISRD 119
GGMESMS P + RG K G +ID ++ DGL+D + HMG AEN AK++ +SRD
Sbjct: 114 GGMESMSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRD 173
Query: 120 EQDEYALSSYKKSADAYKNNVFSSQIVPVSIPQRKGKADIIVNEDEEYKK-INFEKFKSL 178
EQD +A++S K+ A K+ F +IVP + RKG DI V+ DE + + L
Sbjct: 174 EQDAFAVASQNKAEAAQKDGRFKDEIVPFIVKGRKG--DITVDADEYIRHGATLDSMAKL 231
Query: 179 ATVFQKENGTVTAGNASTLNDGAAACVLMTEEAVRKFNAKPLARIIAYFDAATEPIDFPI 238
F KE GTVTAGNAS LNDGAAA +LM+E + +PL RI+++ +P
Sbjct: 232 RPAFDKE-GTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGT 290
Query: 239 APAFAIPTLLKNGGVAKQDVALWEINEAFSVVVLANIKKLDIDPSKVNVHGGAVSLGHPI 298
P A L+ G D+ L E +EAF+ A K L DPS VNV+GGA+++GHPI
Sbjct: 291 GPIPASRKALERAGWKIGDLDLVEAHEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPI 350
Query: 299 GMSGARIVIHLCHALK 314
G SGARI+ L +K
Sbjct: 351 GASGARILNTLLFEMK 366
Score = 220 bits (561), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 116/284 (40%), Positives = 169/284 (59%), Gaps = 5/284 (1%)
Query: 380 VFIVSGSRTPMGSFRSSLVSLSATKLGAVAIESAIQKANMDKSDVQEVYMGNVCQAGLGQ 439
+ I S +RT +GSF + + A +LGA I + +++A + +V EV +G V AG GQ
Sbjct: 5 IVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQ 64
Query: 440 APCRQAVIFAGLPKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMVAGGMESMSNVPF 499
P RQA + AG+P+ +N++C SG++A+ L Q ++ G ++VAGGMESMS P
Sbjct: 65 NPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMAPH 124
Query: 500 YLN-RGETKYGGMNLIDGIVYDGLSDVYNKIHMGNCAENTAKKFNISRDEQDEYALSSYK 558
+ RG K G +ID ++ DGL+D + HMG AEN AK++ +SRDEQD +A++S
Sbjct: 125 CAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQN 184
Query: 559 KSADAYKNNVFSSQIVPVSIPQRKGKADIIVNEDEEYKK-INFEKFKSLATVFQKENGTV 617
K+ A K+ F +IVP + RKG DI V+ DE + + L F KE GTV
Sbjct: 185 KAEAAQKDGRFKDEIVPFIVKGRKG--DITVDADEYIRHGATLDSMAKLRPAFDKE-GTV 241
Query: 618 TAGNASTLNDGAAACVLMTEEAVRKFNAKPLARIIAYFDAATEP 661
TAGNAS LNDGAAA +LM+E + +PL RI+++ +P
Sbjct: 242 TAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDP 285
>pdb|1M1T|A Chain A, Biosynthetic Thiolase, Q64a Mutant
pdb|1M1T|B Chain B, Biosynthetic Thiolase, Q64a Mutant
pdb|1M1T|C Chain C, Biosynthetic Thiolase, Q64a Mutant
pdb|1M1T|D Chain D, Biosynthetic Thiolase, Q64a Mutant
Length = 392
Score = 238 bits (608), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 134/316 (42%), Positives = 184/316 (58%), Gaps = 5/316 (1%)
Query: 1 MGNVCQAGLGQAPCRQAVIFAGLPKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMVA 60
+G V AG G P RQA + AG+P+ +N++C SG++A+ L Q ++ G ++VA
Sbjct: 54 LGQVLPAGEGANPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVA 113
Query: 61 GGMESMSNVPFYLN-RGETKYGGMNLIDGIVYDGLSDVYNKIHMGNCAENTAKKFNISRD 119
GGMESMS P + RG K G +ID ++ DGL+D + HMG AEN AK++ +SRD
Sbjct: 114 GGMESMSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRD 173
Query: 120 EQDEYALSSYKKSADAYKNNVFSSQIVPVSIPQRKGKADIIVNEDEEYKK-INFEKFKSL 178
EQD +A++S K+ A K+ F +IVP + RKG DI V+ DE + + L
Sbjct: 174 EQDAFAVASQNKAEAAQKDGRFKDEIVPFIVKGRKG--DITVDADEYIRHGATLDSMAKL 231
Query: 179 ATVFQKENGTVTAGNASTLNDGAAACVLMTEEAVRKFNAKPLARIIAYFDAATEPIDFPI 238
F KE GTVTAGNAS LNDGAAA +LM+E + +PL RI+++ +P
Sbjct: 232 RPAFDKE-GTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGT 290
Query: 239 APAFAIPTLLKNGGVAKQDVALWEINEAFSVVVLANIKKLDIDPSKVNVHGGAVSLGHPI 298
P A L+ G D+ L E NEAF+ A K L DPS VNV+GGA+++GHPI
Sbjct: 291 GPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPI 350
Query: 299 GMSGARIVIHLCHALK 314
G SGARI+ L +K
Sbjct: 351 GASGARILNTLLFEMK 366
Score = 217 bits (553), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 115/284 (40%), Positives = 168/284 (59%), Gaps = 5/284 (1%)
Query: 380 VFIVSGSRTPMGSFRSSLVSLSATKLGAVAIESAIQKANMDKSDVQEVYMGNVCQAGLGQ 439
+ I S +RT +GSF + + A +LGA I + +++A + +V EV +G V AG G
Sbjct: 5 IVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGA 64
Query: 440 APCRQAVIFAGLPKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMVAGGMESMSNVPF 499
P RQA + AG+P+ +N++C SG++A+ L Q ++ G ++VAGGMESMS P
Sbjct: 65 NPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMAPH 124
Query: 500 YLN-RGETKYGGMNLIDGIVYDGLSDVYNKIHMGNCAENTAKKFNISRDEQDEYALSSYK 558
+ RG K G +ID ++ DGL+D + HMG AEN AK++ +SRDEQD +A++S
Sbjct: 125 CAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQN 184
Query: 559 KSADAYKNNVFSSQIVPVSIPQRKGKADIIVNEDEEYKK-INFEKFKSLATVFQKENGTV 617
K+ A K+ F +IVP + RKG DI V+ DE + + L F KE GTV
Sbjct: 185 KAEAAQKDGRFKDEIVPFIVKGRKG--DITVDADEYIRHGATLDSMAKLRPAFDKE-GTV 241
Query: 618 TAGNASTLNDGAAACVLMTEEAVRKFNAKPLARIIAYFDAATEP 661
TAGNAS LNDGAAA +LM+E + +PL RI+++ +P
Sbjct: 242 TAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDP 285
>pdb|2WL5|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348n Mutant With Coenzyme A.
pdb|2WL5|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348n Mutant With Coenzyme A
Length = 392
Score = 238 bits (607), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 134/316 (42%), Positives = 185/316 (58%), Gaps = 5/316 (1%)
Query: 1 MGNVCQAGLGQAPCRQAVIFAGLPKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMVA 60
+G V AG GQ P RQA + AG+P+ +N++C SG++A+ L Q ++ G ++VA
Sbjct: 54 LGQVLPAGEGQNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVA 113
Query: 61 GGMESMSNVPFYLN-RGETKYGGMNLIDGIVYDGLSDVYNKIHMGNCAENTAKKFNISRD 119
GGMESMS P + RG K G +ID ++ DGL+D + HMG AEN AK++ +SRD
Sbjct: 114 GGMESMSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRD 173
Query: 120 EQDEYALSSYKKSADAYKNNVFSSQIVPVSIPQRKGKADIIVNEDEEYKK-INFEKFKSL 178
EQD +A++S K+ A K+ F +IVP + RKG DI V+ DE + + L
Sbjct: 174 EQDAFAVASQNKAEAAQKDGRFKDEIVPFIVKGRKG--DITVDADEYIRHGATLDSMAKL 231
Query: 179 ATVFQKENGTVTAGNASTLNDGAAACVLMTEEAVRKFNAKPLARIIAYFDAATEPIDFPI 238
F KE GTVTAGNAS LNDGAAA +LM+E + +PL RI+++ +P
Sbjct: 232 RPAFDKE-GTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGT 290
Query: 239 APAFAIPTLLKNGGVAKQDVALWEINEAFSVVVLANIKKLDIDPSKVNVHGGAVSLGHPI 298
P A L+ G D+ L E NEAF+ A K L DPS VNV+GGA+++G+PI
Sbjct: 291 GPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGNPI 350
Query: 299 GMSGARIVIHLCHALK 314
G SGARI+ L +K
Sbjct: 351 GASGARILNTLLFEMK 366
Score = 220 bits (560), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 116/284 (40%), Positives = 169/284 (59%), Gaps = 5/284 (1%)
Query: 380 VFIVSGSRTPMGSFRSSLVSLSATKLGAVAIESAIQKANMDKSDVQEVYMGNVCQAGLGQ 439
+ I S +RT +GSF + + A +LGA I + +++A + +V EV +G V AG GQ
Sbjct: 5 IVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQ 64
Query: 440 APCRQAVIFAGLPKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMVAGGMESMSNVPF 499
P RQA + AG+P+ +N++C SG++A+ L Q ++ G ++VAGGMESMS P
Sbjct: 65 NPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMAPH 124
Query: 500 YLN-RGETKYGGMNLIDGIVYDGLSDVYNKIHMGNCAENTAKKFNISRDEQDEYALSSYK 558
+ RG K G +ID ++ DGL+D + HMG AEN AK++ +SRDEQD +A++S
Sbjct: 125 CAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQN 184
Query: 559 KSADAYKNNVFSSQIVPVSIPQRKGKADIIVNEDEEYKK-INFEKFKSLATVFQKENGTV 617
K+ A K+ F +IVP + RKG DI V+ DE + + L F KE GTV
Sbjct: 185 KAEAAQKDGRFKDEIVPFIVKGRKG--DITVDADEYIRHGATLDSMAKLRPAFDKE-GTV 241
Query: 618 TAGNASTLNDGAAACVLMTEEAVRKFNAKPLARIIAYFDAATEP 661
TAGNAS LNDGAAA +LM+E + +PL RI+++ +P
Sbjct: 242 TAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDP 285
>pdb|1M1O|A Chain A, Crystal Structure Of Biosynthetic Thiolase, C89a Mutant,
Complexed With Acetoacetyl-Coa
pdb|1M1O|B Chain B, Crystal Structure Of Biosynthetic Thiolase, C89a Mutant,
Complexed With Acetoacetyl-Coa
pdb|1M1O|C Chain C, Crystal Structure Of Biosynthetic Thiolase, C89a Mutant,
Complexed With Acetoacetyl-Coa
pdb|1M1O|D Chain D, Crystal Structure Of Biosynthetic Thiolase, C89a Mutant,
Complexed With Acetoacetyl-Coa
pdb|1M3K|A Chain A, Biosynthetic Thiolase, Inactive C89a Mutant
pdb|1M3K|B Chain B, Biosynthetic Thiolase, Inactive C89a Mutant
pdb|1M3K|C Chain C, Biosynthetic Thiolase, Inactive C89a Mutant
pdb|1M3K|D Chain D, Biosynthetic Thiolase, Inactive C89a Mutant
pdb|1M3Z|A Chain A, Biosynthetic Thiolase, C89a Mutant, Complexed With Acetyl
Coenzyme A
pdb|1M3Z|B Chain B, Biosynthetic Thiolase, C89a Mutant, Complexed With Acetyl
Coenzyme A
pdb|1M3Z|C Chain C, Biosynthetic Thiolase, C89a Mutant, Complexed With Acetyl
Coenzyme A
pdb|1M3Z|D Chain D, Biosynthetic Thiolase, C89a Mutant, Complexed With Acetyl
Coenzyme A
pdb|2VTZ|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
C89a Mutant With Coenzyme A.
pdb|2VTZ|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
C89a Mutant With Coenzyme A.
pdb|2VTZ|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
C89a Mutant With Coenzyme A.
pdb|2VTZ|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
C89a Mutant With Coenzyme A
Length = 392
Score = 238 bits (607), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 134/316 (42%), Positives = 184/316 (58%), Gaps = 5/316 (1%)
Query: 1 MGNVCQAGLGQAPCRQAVIFAGLPKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMVA 60
+G V AG GQ P RQA + AG+P+ +N++ SG++A+ L Q ++ G ++VA
Sbjct: 54 LGQVLPAGEGQNPARQAAMKAGVPQEATAWGMNQLAGSGLRAVALGMQQIATGDASIIVA 113
Query: 61 GGMESMSNVPFYLN-RGETKYGGMNLIDGIVYDGLSDVYNKIHMGNCAENTAKKFNISRD 119
GGMESMS P + RG K G +ID ++ DGL+D + HMG AEN AK++ +SRD
Sbjct: 114 GGMESMSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRD 173
Query: 120 EQDEYALSSYKKSADAYKNNVFSSQIVPVSIPQRKGKADIIVNEDEEYKK-INFEKFKSL 178
EQD +A++S K+ A K+ F +IVP + RKG DI V+ DE + + L
Sbjct: 174 EQDAFAVASQNKAEAAQKDGRFKDEIVPFIVKGRKG--DITVDADEYIRHGATLDSMAKL 231
Query: 179 ATVFQKENGTVTAGNASTLNDGAAACVLMTEEAVRKFNAKPLARIIAYFDAATEPIDFPI 238
F KE GTVTAGNAS LNDGAAA +LM+E + +PL RI+++ +P
Sbjct: 232 RPAFDKE-GTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGT 290
Query: 239 APAFAIPTLLKNGGVAKQDVALWEINEAFSVVVLANIKKLDIDPSKVNVHGGAVSLGHPI 298
P A L+ G D+ L E NEAF+ A K L DPS VNV+GGA+++GHPI
Sbjct: 291 GPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPI 350
Query: 299 GMSGARIVIHLCHALK 314
G SGARI+ L +K
Sbjct: 351 GASGARILNTLLFEMK 366
Score = 217 bits (552), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 115/284 (40%), Positives = 168/284 (59%), Gaps = 5/284 (1%)
Query: 380 VFIVSGSRTPMGSFRSSLVSLSATKLGAVAIESAIQKANMDKSDVQEVYMGNVCQAGLGQ 439
+ I S +RT +GSF + + A +LGA I + +++A + +V EV +G V AG GQ
Sbjct: 5 IVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQ 64
Query: 440 APCRQAVIFAGLPKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMVAGGMESMSNVPF 499
P RQA + AG+P+ +N++ SG++A+ L Q ++ G ++VAGGMESMS P
Sbjct: 65 NPARQAAMKAGVPQEATAWGMNQLAGSGLRAVALGMQQIATGDASIIVAGGMESMSMAPH 124
Query: 500 YLN-RGETKYGGMNLIDGIVYDGLSDVYNKIHMGNCAENTAKKFNISRDEQDEYALSSYK 558
+ RG K G +ID ++ DGL+D + HMG AEN AK++ +SRDEQD +A++S
Sbjct: 125 CAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQN 184
Query: 559 KSADAYKNNVFSSQIVPVSIPQRKGKADIIVNEDEEYKK-INFEKFKSLATVFQKENGTV 617
K+ A K+ F +IVP + RKG DI V+ DE + + L F KE GTV
Sbjct: 185 KAEAAQKDGRFKDEIVPFIVKGRKG--DITVDADEYIRHGATLDSMAKLRPAFDKE-GTV 241
Query: 618 TAGNASTLNDGAAACVLMTEEAVRKFNAKPLARIIAYFDAATEP 661
TAGNAS LNDGAAA +LM+E + +PL RI+++ +P
Sbjct: 242 TAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDP 285
>pdb|2WL4|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348a Mutant With Coenzyme A
Length = 392
Score = 238 bits (606), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 134/316 (42%), Positives = 184/316 (58%), Gaps = 5/316 (1%)
Query: 1 MGNVCQAGLGQAPCRQAVIFAGLPKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMVA 60
+G V AG GQ P RQA + AG+P+ +N++C SG++A+ L Q ++ G ++VA
Sbjct: 54 LGQVLPAGEGQNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVA 113
Query: 61 GGMESMSNVPFYLN-RGETKYGGMNLIDGIVYDGLSDVYNKIHMGNCAENTAKKFNISRD 119
GGMESMS P + RG K G +ID ++ DGL+D + HMG AEN AK++ +SRD
Sbjct: 114 GGMESMSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRD 173
Query: 120 EQDEYALSSYKKSADAYKNNVFSSQIVPVSIPQRKGKADIIVNEDEEYKK-INFEKFKSL 178
EQD +A++S K+ A K+ F +IVP + RKG DI V+ DE + + L
Sbjct: 174 EQDAFAVASQNKAEAAQKDGRFKDEIVPFIVKGRKG--DITVDADEYIRHGATLDSMAKL 231
Query: 179 ATVFQKENGTVTAGNASTLNDGAAACVLMTEEAVRKFNAKPLARIIAYFDAATEPIDFPI 238
F KE GTVTAGNAS LNDGAAA +LM+E + +PL RI+++ +P
Sbjct: 232 RPAFDKE-GTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGT 290
Query: 239 APAFAIPTLLKNGGVAKQDVALWEINEAFSVVVLANIKKLDIDPSKVNVHGGAVSLGHPI 298
P A L+ G D+ L E NEAF+ A K L DPS VNV+GGA+++G PI
Sbjct: 291 GPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGAPI 350
Query: 299 GMSGARIVIHLCHALK 314
G SGARI+ L +K
Sbjct: 351 GASGARILNTLLFEMK 366
Score = 220 bits (561), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 116/284 (40%), Positives = 169/284 (59%), Gaps = 5/284 (1%)
Query: 380 VFIVSGSRTPMGSFRSSLVSLSATKLGAVAIESAIQKANMDKSDVQEVYMGNVCQAGLGQ 439
+ I S +RT +GSF + + A +LGA I + +++A + +V EV +G V AG GQ
Sbjct: 5 IVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQ 64
Query: 440 APCRQAVIFAGLPKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMVAGGMESMSNVPF 499
P RQA + AG+P+ +N++C SG++A+ L Q ++ G ++VAGGMESMS P
Sbjct: 65 NPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMAPH 124
Query: 500 YLN-RGETKYGGMNLIDGIVYDGLSDVYNKIHMGNCAENTAKKFNISRDEQDEYALSSYK 558
+ RG K G +ID ++ DGL+D + HMG AEN AK++ +SRDEQD +A++S
Sbjct: 125 CAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQN 184
Query: 559 KSADAYKNNVFSSQIVPVSIPQRKGKADIIVNEDEEYKK-INFEKFKSLATVFQKENGTV 617
K+ A K+ F +IVP + RKG DI V+ DE + + L F KE GTV
Sbjct: 185 KAEAAQKDGRFKDEIVPFIVKGRKG--DITVDADEYIRHGATLDSMAKLRPAFDKE-GTV 241
Query: 618 TAGNASTLNDGAAACVLMTEEAVRKFNAKPLARIIAYFDAATEP 661
TAGNAS LNDGAAA +LM+E + +PL RI+++ +P
Sbjct: 242 TAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDP 285
>pdb|2WL4|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348a Mutant With Coenzyme A
Length = 392
Score = 237 bits (605), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 134/316 (42%), Positives = 184/316 (58%), Gaps = 5/316 (1%)
Query: 1 MGNVCQAGLGQAPCRQAVIFAGLPKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMVA 60
+G V AG GQ P RQA + AG+P+ +N++C SG++A+ L Q ++ G ++VA
Sbjct: 54 LGQVLPAGEGQNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVA 113
Query: 61 GGMESMSNVPFYLN-RGETKYGGMNLIDGIVYDGLSDVYNKIHMGNCAENTAKKFNISRD 119
GGMESMS P + RG K G +ID ++ DGL+D + HMG AEN AK++ +SRD
Sbjct: 114 GGMESMSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRD 173
Query: 120 EQDEYALSSYKKSADAYKNNVFSSQIVPVSIPQRKGKADIIVNEDEEYKK-INFEKFKSL 178
EQD +A++S K+ A K+ F +IVP + RKG DI V+ DE + + L
Sbjct: 174 EQDAFAVASQNKAEAAQKDGRFKDEIVPFIVKGRKG--DITVDADEYIRHGATLDSMAKL 231
Query: 179 ATVFQKENGTVTAGNASTLNDGAAACVLMTEEAVRKFNAKPLARIIAYFDAATEPIDFPI 238
F KE GTVTAGNAS LNDGAAA +LM+E + +PL RI+++ +P
Sbjct: 232 RPAFDKE-GTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGT 290
Query: 239 APAFAIPTLLKNGGVAKQDVALWEINEAFSVVVLANIKKLDIDPSKVNVHGGAVSLGHPI 298
P A L+ G D+ L E NEAF+ A K L DPS VNV+GGA+++G PI
Sbjct: 291 GPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGAPI 350
Query: 299 GMSGARIVIHLCHALK 314
G SGARI+ L +K
Sbjct: 351 GASGARILNTLLFEMK 366
Score = 220 bits (561), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 116/284 (40%), Positives = 169/284 (59%), Gaps = 5/284 (1%)
Query: 380 VFIVSGSRTPMGSFRSSLVSLSATKLGAVAIESAIQKANMDKSDVQEVYMGNVCQAGLGQ 439
+ I S +RT +GSF + + A +LGA I + +++A + +V EV +G V AG GQ
Sbjct: 5 IVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQ 64
Query: 440 APCRQAVIFAGLPKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMVAGGMESMSNVPF 499
P RQA + AG+P+ +N++C SG++A+ L Q ++ G ++VAGGMESMS P
Sbjct: 65 NPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMAPH 124
Query: 500 YLN-RGETKYGGMNLIDGIVYDGLSDVYNKIHMGNCAENTAKKFNISRDEQDEYALSSYK 558
+ RG K G +ID ++ DGL+D + HMG AEN AK++ +SRDEQD +A++S
Sbjct: 125 CAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQN 184
Query: 559 KSADAYKNNVFSSQIVPVSIPQRKGKADIIVNEDEEYKK-INFEKFKSLATVFQKENGTV 617
K+ A K+ F +IVP + RKG DI V+ DE + + L F KE GTV
Sbjct: 185 KAEAAQKDGRFKDEIVPFIVKGRKG--DITVDADEYIRHGATLDSMAKLRPAFDKE-GTV 241
Query: 618 TAGNASTLNDGAAACVLMTEEAVRKFNAKPLARIIAYFDAATEP 661
TAGNAS LNDGAAA +LM+E + +PL RI+++ +P
Sbjct: 242 TAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDP 285
>pdb|1M4S|A Chain A, Biosynthetic Thiolase, Cys89 Acetylated, Unliganded Form
pdb|1M4S|B Chain B, Biosynthetic Thiolase, Cys89 Acetylated, Unliganded Form
pdb|1M4S|C Chain C, Biosynthetic Thiolase, Cys89 Acetylated, Unliganded Form
pdb|1M4S|D Chain D, Biosynthetic Thiolase, Cys89 Acetylated, Unliganded Form
pdb|1M4T|A Chain A, Biosynthetic Thiolase, Cys89 Butyrylated
pdb|1M4T|B Chain B, Biosynthetic Thiolase, Cys89 Butyrylated
pdb|1M4T|C Chain C, Biosynthetic Thiolase, Cys89 Butyrylated
pdb|1M4T|D Chain D, Biosynthetic Thiolase, Cys89 Butyrylated
pdb|1NL7|A Chain A, Z. Ramigera Biosynthetic Thiolase, Acetylated Enzyme
Complexed With Coa At Ph 9.5
pdb|1NL7|B Chain B, Z. Ramigera Biosynthetic Thiolase, Acetylated Enzyme
Complexed With Coa At Ph 9.5
pdb|1NL7|C Chain C, Z. Ramigera Biosynthetic Thiolase, Acetylated Enzyme
Complexed With Coa At Ph 9.5
pdb|1NL7|D Chain D, Z. Ramigera Biosynthetic Thiolase, Acetylated Enzyme
Complexed With Coa At Ph 9.5
pdb|1OU6|A Chain A, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Acetyl-O- Pantetheine-11-Pivalate
pdb|1OU6|B Chain B, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Acetyl-O- Pantetheine-11-Pivalate
pdb|1OU6|C Chain C, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Acetyl-O- Pantetheine-11-Pivalate
pdb|1OU6|D Chain D, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Acetyl-O- Pantetheine-11-Pivalate
pdb|2VU0|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
Oxidised Enzyme With Coenzyme A.
pdb|2VU0|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
Oxidised Enzyme With Coenzyme A.
pdb|2VU0|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
Oxidised Enzyme With Coenzyme A.
pdb|2VU0|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
Oxidised Enzyme With Coenzyme A.
pdb|2VU1|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of With O-
Pantheteine-11-Pivalate.
pdb|2VU1|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of With O-
Pantheteine-11-Pivalate.
pdb|2VU1|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of With O-
Pantheteine-11-Pivalate.
pdb|2VU1|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of With O-
Pantheteine-11-Pivalate
Length = 392
Score = 237 bits (605), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 134/316 (42%), Positives = 184/316 (58%), Gaps = 5/316 (1%)
Query: 1 MGNVCQAGLGQAPCRQAVIFAGLPKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMVA 60
+G V AG GQ P RQA + AG+P+ +N++ SG++A+ L Q ++ G ++VA
Sbjct: 54 LGQVLPAGEGQNPARQAAMKAGVPQEATAWGMNQLXGSGLRAVALGMQQIATGDASIIVA 113
Query: 61 GGMESMSNVPFYLN-RGETKYGGMNLIDGIVYDGLSDVYNKIHMGNCAENTAKKFNISRD 119
GGMESMS P + RG K G +ID ++ DGL+D + HMG AEN AK++ +SRD
Sbjct: 114 GGMESMSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRD 173
Query: 120 EQDEYALSSYKKSADAYKNNVFSSQIVPVSIPQRKGKADIIVNEDEEYKK-INFEKFKSL 178
EQD +A++S K+ A K+ F +IVP + RKG DI V+ DE + + L
Sbjct: 174 EQDAFAVASQNKAEAAQKDGRFKDEIVPFIVKGRKG--DITVDADEYIRHGATLDSMAKL 231
Query: 179 ATVFQKENGTVTAGNASTLNDGAAACVLMTEEAVRKFNAKPLARIIAYFDAATEPIDFPI 238
F KE GTVTAGNAS LNDGAAA +LM+E + +PL RI+++ +P
Sbjct: 232 RPAFDKE-GTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGT 290
Query: 239 APAFAIPTLLKNGGVAKQDVALWEINEAFSVVVLANIKKLDIDPSKVNVHGGAVSLGHPI 298
P A L+ G D+ L E NEAF+ A K L DPS VNV+GGA+++GHPI
Sbjct: 291 GPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPI 350
Query: 299 GMSGARIVIHLCHALK 314
G SGARI+ L +K
Sbjct: 351 GASGARILNTLLFEMK 366
Score = 216 bits (550), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 115/284 (40%), Positives = 168/284 (59%), Gaps = 5/284 (1%)
Query: 380 VFIVSGSRTPMGSFRSSLVSLSATKLGAVAIESAIQKANMDKSDVQEVYMGNVCQAGLGQ 439
+ I S +RT +GSF + + A +LGA I + +++A + +V EV +G V AG GQ
Sbjct: 5 IVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQ 64
Query: 440 APCRQAVIFAGLPKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMVAGGMESMSNVPF 499
P RQA + AG+P+ +N++ SG++A+ L Q ++ G ++VAGGMESMS P
Sbjct: 65 NPARQAAMKAGVPQEATAWGMNQLXGSGLRAVALGMQQIATGDASIIVAGGMESMSMAPH 124
Query: 500 YLN-RGETKYGGMNLIDGIVYDGLSDVYNKIHMGNCAENTAKKFNISRDEQDEYALSSYK 558
+ RG K G +ID ++ DGL+D + HMG AEN AK++ +SRDEQD +A++S
Sbjct: 125 CAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQN 184
Query: 559 KSADAYKNNVFSSQIVPVSIPQRKGKADIIVNEDEEYKK-INFEKFKSLATVFQKENGTV 617
K+ A K+ F +IVP + RKG DI V+ DE + + L F KE GTV
Sbjct: 185 KAEAAQKDGRFKDEIVPFIVKGRKG--DITVDADEYIRHGATLDSMAKLRPAFDKE-GTV 241
Query: 618 TAGNASTLNDGAAACVLMTEEAVRKFNAKPLARIIAYFDAATEP 661
TAGNAS LNDGAAA +LM+E + +PL RI+++ +P
Sbjct: 242 TAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDP 285
>pdb|1QFL|A Chain A, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With A Reaction Intermediate.
pdb|1QFL|B Chain B, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With A Reaction Intermediate.
pdb|1QFL|C Chain C, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With A Reaction Intermediate.
pdb|1QFL|D Chain D, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With A Reaction Intermediate.
pdb|1DM3|A Chain A, Acetylated Biosynthetic Thiolase From Zoogloea Ramigera In
Complex With Acetyl-Coa
pdb|1DM3|B Chain B, Acetylated Biosynthetic Thiolase From Zoogloea Ramigera In
Complex With Acetyl-Coa
pdb|1DM3|C Chain C, Acetylated Biosynthetic Thiolase From Zoogloea Ramigera In
Complex With Acetyl-Coa
pdb|1DM3|D Chain D, Acetylated Biosynthetic Thiolase From Zoogloea Ramigera In
Complex With Acetyl-Coa
Length = 389
Score = 237 bits (604), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 134/316 (42%), Positives = 184/316 (58%), Gaps = 5/316 (1%)
Query: 1 MGNVCQAGLGQAPCRQAVIFAGLPKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMVA 60
+G V AG GQ P RQA + AG+P+ +N++ SG++A+ L Q ++ G ++VA
Sbjct: 51 LGQVLPAGEGQNPARQAAMKAGVPQEATAWGMNQLXGSGLRAVALGMQQIATGDASIIVA 110
Query: 61 GGMESMSNVPFYLN-RGETKYGGMNLIDGIVYDGLSDVYNKIHMGNCAENTAKKFNISRD 119
GGMESMS P + RG K G +ID ++ DGL+D + HMG AEN AK++ +SRD
Sbjct: 111 GGMESMSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRD 170
Query: 120 EQDEYALSSYKKSADAYKNNVFSSQIVPVSIPQRKGKADIIVNEDEEYKK-INFEKFKSL 178
EQD +A++S K+ A K+ F +IVP + RKG DI V+ DE + + L
Sbjct: 171 EQDAFAVASQNKAEAAQKDGRFKDEIVPFIVKGRKG--DITVDADEYIRHGATLDSMAKL 228
Query: 179 ATVFQKENGTVTAGNASTLNDGAAACVLMTEEAVRKFNAKPLARIIAYFDAATEPIDFPI 238
F KE GTVTAGNAS LNDGAAA +LM+E + +PL RI+++ +P
Sbjct: 229 RPAFDKE-GTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGT 287
Query: 239 APAFAIPTLLKNGGVAKQDVALWEINEAFSVVVLANIKKLDIDPSKVNVHGGAVSLGHPI 298
P A L+ G D+ L E NEAF+ A K L DPS VNV+GGA+++GHPI
Sbjct: 288 GPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPI 347
Query: 299 GMSGARIVIHLCHALK 314
G SGARI+ L +K
Sbjct: 348 GASGARILNTLLFEMK 363
Score = 216 bits (550), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 115/284 (40%), Positives = 168/284 (59%), Gaps = 5/284 (1%)
Query: 380 VFIVSGSRTPMGSFRSSLVSLSATKLGAVAIESAIQKANMDKSDVQEVYMGNVCQAGLGQ 439
+ I S +RT +GSF + + A +LGA I + +++A + +V EV +G V AG GQ
Sbjct: 2 IVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQ 61
Query: 440 APCRQAVIFAGLPKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMVAGGMESMSNVPF 499
P RQA + AG+P+ +N++ SG++A+ L Q ++ G ++VAGGMESMS P
Sbjct: 62 NPARQAAMKAGVPQEATAWGMNQLXGSGLRAVALGMQQIATGDASIIVAGGMESMSMAPH 121
Query: 500 YLN-RGETKYGGMNLIDGIVYDGLSDVYNKIHMGNCAENTAKKFNISRDEQDEYALSSYK 558
+ RG K G +ID ++ DGL+D + HMG AEN AK++ +SRDEQD +A++S
Sbjct: 122 CAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQN 181
Query: 559 KSADAYKNNVFSSQIVPVSIPQRKGKADIIVNEDEEYKK-INFEKFKSLATVFQKENGTV 617
K+ A K+ F +IVP + RKG DI V+ DE + + L F KE GTV
Sbjct: 182 KAEAAQKDGRFKDEIVPFIVKGRKG--DITVDADEYIRHGATLDSMAKLRPAFDKE-GTV 238
Query: 618 TAGNASTLNDGAAACVLMTEEAVRKFNAKPLARIIAYFDAATEP 661
TAGNAS LNDGAAA +LM+E + +PL RI+++ +P
Sbjct: 239 TAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDP 282
>pdb|2WL6|A Chain A, Biosynthetic Thiolase From Z. Ramigera. The N316h-H348n
Mutant.
pdb|2WL6|B Chain B, Biosynthetic Thiolase From Z. Ramigera. The N316h-H348n
Mutant.
pdb|2WL6|C Chain C, Biosynthetic Thiolase From Z. Ramigera. The N316h-H348n
Mutant.
pdb|2WL6|D Chain D, Biosynthetic Thiolase From Z. Ramigera. The N316h-H348n
Mutant
Length = 392
Score = 236 bits (602), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 133/316 (42%), Positives = 185/316 (58%), Gaps = 5/316 (1%)
Query: 1 MGNVCQAGLGQAPCRQAVIFAGLPKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMVA 60
+G V AG GQ P RQA + AG+P+ +N++C SG++A+ L Q ++ G ++VA
Sbjct: 54 LGQVLPAGEGQNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVA 113
Query: 61 GGMESMSNVPFYLN-RGETKYGGMNLIDGIVYDGLSDVYNKIHMGNCAENTAKKFNISRD 119
GGMESMS P + RG K G +ID ++ DGL+D + HMG AEN AK++ +SRD
Sbjct: 114 GGMESMSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRD 173
Query: 120 EQDEYALSSYKKSADAYKNNVFSSQIVPVSIPQRKGKADIIVNEDEEYKK-INFEKFKSL 178
EQD +A++S K+ A K+ F +IVP + RKG DI V+ DE + + L
Sbjct: 174 EQDAFAVASQNKAEAAQKDGRFKDEIVPFIVKGRKG--DITVDADEYIRHGATLDSMAKL 231
Query: 179 ATVFQKENGTVTAGNASTLNDGAAACVLMTEEAVRKFNAKPLARIIAYFDAATEPIDFPI 238
F KE GTVTAGNAS LNDGAAA +LM+E + +PL RI+++ +P
Sbjct: 232 RPAFDKE-GTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGT 290
Query: 239 APAFAIPTLLKNGGVAKQDVALWEINEAFSVVVLANIKKLDIDPSKVNVHGGAVSLGHPI 298
P A L+ G D+ L E +EAF+ A K L DPS VNV+GGA+++G+PI
Sbjct: 291 GPIPASRKALERAGWKIGDLDLVEAHEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGNPI 350
Query: 299 GMSGARIVIHLCHALK 314
G SGARI+ L +K
Sbjct: 351 GASGARILNTLLFEMK 366
Score = 220 bits (560), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 116/284 (40%), Positives = 169/284 (59%), Gaps = 5/284 (1%)
Query: 380 VFIVSGSRTPMGSFRSSLVSLSATKLGAVAIESAIQKANMDKSDVQEVYMGNVCQAGLGQ 439
+ I S +RT +GSF + + A +LGA I + +++A + +V EV +G V AG GQ
Sbjct: 5 IVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQ 64
Query: 440 APCRQAVIFAGLPKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMVAGGMESMSNVPF 499
P RQA + AG+P+ +N++C SG++A+ L Q ++ G ++VAGGMESMS P
Sbjct: 65 NPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMAPH 124
Query: 500 YLN-RGETKYGGMNLIDGIVYDGLSDVYNKIHMGNCAENTAKKFNISRDEQDEYALSSYK 558
+ RG K G +ID ++ DGL+D + HMG AEN AK++ +SRDEQD +A++S
Sbjct: 125 CAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQN 184
Query: 559 KSADAYKNNVFSSQIVPVSIPQRKGKADIIVNEDEEYKK-INFEKFKSLATVFQKENGTV 617
K+ A K+ F +IVP + RKG DI V+ DE + + L F KE GTV
Sbjct: 185 KAEAAQKDGRFKDEIVPFIVKGRKG--DITVDADEYIRHGATLDSMAKLRPAFDKE-GTV 241
Query: 618 TAGNASTLNDGAAACVLMTEEAVRKFNAKPLARIIAYFDAATEP 661
TAGNAS LNDGAAA +LM+E + +PL RI+++ +P
Sbjct: 242 TAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDP 285
>pdb|2WL5|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348n Mutant With Coenzyme A.
pdb|2WL5|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348n Mutant With Coenzyme A
Length = 392
Score = 234 bits (597), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 133/316 (42%), Positives = 184/316 (58%), Gaps = 5/316 (1%)
Query: 1 MGNVCQAGLGQAPCRQAVIFAGLPKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMVA 60
+G V AG GQ P RQA + AG+P+ +N++ SG++A+ L Q ++ G ++VA
Sbjct: 54 LGQVLPAGEGQNPARQAAMKAGVPQEATAWGMNQLXGSGLRAVALGMQQIATGDASIIVA 113
Query: 61 GGMESMSNVPFYLN-RGETKYGGMNLIDGIVYDGLSDVYNKIHMGNCAENTAKKFNISRD 119
GGMESMS P + RG K G +ID ++ DGL+D + HMG AEN AK++ +SRD
Sbjct: 114 GGMESMSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRD 173
Query: 120 EQDEYALSSYKKSADAYKNNVFSSQIVPVSIPQRKGKADIIVNEDEEYKK-INFEKFKSL 178
EQD +A++S K+ A K+ F +IVP + RKG DI V+ DE + + L
Sbjct: 174 EQDAFAVASQNKAEAAQKDGRFKDEIVPFIVKGRKG--DITVDADEYIRHGATLDSMAKL 231
Query: 179 ATVFQKENGTVTAGNASTLNDGAAACVLMTEEAVRKFNAKPLARIIAYFDAATEPIDFPI 238
F KE GTVTAGNAS LNDGAAA +LM+E + +PL RI+++ +P
Sbjct: 232 RPAFDKE-GTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGT 290
Query: 239 APAFAIPTLLKNGGVAKQDVALWEINEAFSVVVLANIKKLDIDPSKVNVHGGAVSLGHPI 298
P A L+ G D+ L E NEAF+ A K L DPS VNV+GGA+++G+PI
Sbjct: 291 GPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGNPI 350
Query: 299 GMSGARIVIHLCHALK 314
G SGARI+ L +K
Sbjct: 351 GASGARILNTLLFEMK 366
Score = 216 bits (550), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 115/284 (40%), Positives = 168/284 (59%), Gaps = 5/284 (1%)
Query: 380 VFIVSGSRTPMGSFRSSLVSLSATKLGAVAIESAIQKANMDKSDVQEVYMGNVCQAGLGQ 439
+ I S +RT +GSF + + A +LGA I + +++A + +V EV +G V AG GQ
Sbjct: 5 IVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQ 64
Query: 440 APCRQAVIFAGLPKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMVAGGMESMSNVPF 499
P RQA + AG+P+ +N++ SG++A+ L Q ++ G ++VAGGMESMS P
Sbjct: 65 NPARQAAMKAGVPQEATAWGMNQLXGSGLRAVALGMQQIATGDASIIVAGGMESMSMAPH 124
Query: 500 YLN-RGETKYGGMNLIDGIVYDGLSDVYNKIHMGNCAENTAKKFNISRDEQDEYALSSYK 558
+ RG K G +ID ++ DGL+D + HMG AEN AK++ +SRDEQD +A++S
Sbjct: 125 CAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQN 184
Query: 559 KSADAYKNNVFSSQIVPVSIPQRKGKADIIVNEDEEYKK-INFEKFKSLATVFQKENGTV 617
K+ A K+ F +IVP + RKG DI V+ DE + + L F KE GTV
Sbjct: 185 KAEAAQKDGRFKDEIVPFIVKGRKG--DITVDADEYIRHGATLDSMAKLRPAFDKE-GTV 241
Query: 618 TAGNASTLNDGAAACVLMTEEAVRKFNAKPLARIIAYFDAATEP 661
TAGNAS LNDGAAA +LM+E + +PL RI+++ +P
Sbjct: 242 TAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDP 285
>pdb|2WL4|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348a Mutant With Coenzyme A
Length = 392
Score = 234 bits (596), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 133/316 (42%), Positives = 183/316 (57%), Gaps = 5/316 (1%)
Query: 1 MGNVCQAGLGQAPCRQAVIFAGLPKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMVA 60
+G V AG GQ P RQA + AG+P+ +N++ SG++A+ L Q ++ G ++VA
Sbjct: 54 LGQVLPAGEGQNPARQAAMKAGVPQEATAWGMNQLXGSGLRAVALGMQQIATGDASIIVA 113
Query: 61 GGMESMSNVPFYLN-RGETKYGGMNLIDGIVYDGLSDVYNKIHMGNCAENTAKKFNISRD 119
GGMESMS P + RG K G +ID ++ DGL+D + HMG AEN AK++ +SRD
Sbjct: 114 GGMESMSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRD 173
Query: 120 EQDEYALSSYKKSADAYKNNVFSSQIVPVSIPQRKGKADIIVNEDEEYKK-INFEKFKSL 178
EQD +A++S K+ A K+ F +IVP + RKG DI V+ DE + + L
Sbjct: 174 EQDAFAVASQNKAEAAQKDGRFKDEIVPFIVKGRKG--DITVDADEYIRHGATLDSMAKL 231
Query: 179 ATVFQKENGTVTAGNASTLNDGAAACVLMTEEAVRKFNAKPLARIIAYFDAATEPIDFPI 238
F KE GTVTAGNAS LNDGAAA +LM+E + +PL RI+++ +P
Sbjct: 232 RPAFDKE-GTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGT 290
Query: 239 APAFAIPTLLKNGGVAKQDVALWEINEAFSVVVLANIKKLDIDPSKVNVHGGAVSLGHPI 298
P A L+ G D+ L E NEAF+ A K L DPS VNV+GGA+++G PI
Sbjct: 291 GPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGAPI 350
Query: 299 GMSGARIVIHLCHALK 314
G SGARI+ L +K
Sbjct: 351 GASGARILNTLLFEMK 366
Score = 216 bits (551), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 115/284 (40%), Positives = 168/284 (59%), Gaps = 5/284 (1%)
Query: 380 VFIVSGSRTPMGSFRSSLVSLSATKLGAVAIESAIQKANMDKSDVQEVYMGNVCQAGLGQ 439
+ I S +RT +GSF + + A +LGA I + +++A + +V EV +G V AG GQ
Sbjct: 5 IVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQ 64
Query: 440 APCRQAVIFAGLPKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMVAGGMESMSNVPF 499
P RQA + AG+P+ +N++ SG++A+ L Q ++ G ++VAGGMESMS P
Sbjct: 65 NPARQAAMKAGVPQEATAWGMNQLXGSGLRAVALGMQQIATGDASIIVAGGMESMSMAPH 124
Query: 500 YLN-RGETKYGGMNLIDGIVYDGLSDVYNKIHMGNCAENTAKKFNISRDEQDEYALSSYK 558
+ RG K G +ID ++ DGL+D + HMG AEN AK++ +SRDEQD +A++S
Sbjct: 125 CAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQN 184
Query: 559 KSADAYKNNVFSSQIVPVSIPQRKGKADIIVNEDEEYKK-INFEKFKSLATVFQKENGTV 617
K+ A K+ F +IVP + RKG DI V+ DE + + L F KE GTV
Sbjct: 185 KAEAAQKDGRFKDEIVPFIVKGRKG--DITVDADEYIRHGATLDSMAKLRPAFDKE-GTV 241
Query: 618 TAGNASTLNDGAAACVLMTEEAVRKFNAKPLARIIAYFDAATEP 661
TAGNAS LNDGAAA +LM+E + +PL RI+++ +P
Sbjct: 242 TAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDP 285
>pdb|2WL4|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348a Mutant With Coenzyme A
Length = 392
Score = 233 bits (595), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 133/316 (42%), Positives = 183/316 (57%), Gaps = 5/316 (1%)
Query: 1 MGNVCQAGLGQAPCRQAVIFAGLPKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMVA 60
+G V AG GQ P RQA + AG+P+ +N++ SG++A+ L Q ++ G ++VA
Sbjct: 54 LGQVLPAGEGQNPARQAAMKAGVPQEATAWGMNQLXGSGLRAVALGMQQIATGDASIIVA 113
Query: 61 GGMESMSNVPFYLN-RGETKYGGMNLIDGIVYDGLSDVYNKIHMGNCAENTAKKFNISRD 119
GGMESMS P + RG K G +ID ++ DGL+D + HMG AEN AK++ +SRD
Sbjct: 114 GGMESMSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRD 173
Query: 120 EQDEYALSSYKKSADAYKNNVFSSQIVPVSIPQRKGKADIIVNEDEEYKK-INFEKFKSL 178
EQD +A++S K+ A K+ F +IVP + RKG DI V+ DE + + L
Sbjct: 174 EQDAFAVASQNKAEAAQKDGRFKDEIVPFIVKGRKG--DITVDADEYIRHGATLDSMAKL 231
Query: 179 ATVFQKENGTVTAGNASTLNDGAAACVLMTEEAVRKFNAKPLARIIAYFDAATEPIDFPI 238
F KE GTVTAGNAS LNDGAAA +LM+E + +PL RI+++ +P
Sbjct: 232 RPAFDKE-GTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGT 290
Query: 239 APAFAIPTLLKNGGVAKQDVALWEINEAFSVVVLANIKKLDIDPSKVNVHGGAVSLGHPI 298
P A L+ G D+ L E NEAF+ A K L DPS VNV+GGA+++G PI
Sbjct: 291 GPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGAPI 350
Query: 299 GMSGARIVIHLCHALK 314
G SGARI+ L +K
Sbjct: 351 GASGARILNTLLFEMK 366
Score = 216 bits (550), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 115/284 (40%), Positives = 168/284 (59%), Gaps = 5/284 (1%)
Query: 380 VFIVSGSRTPMGSFRSSLVSLSATKLGAVAIESAIQKANMDKSDVQEVYMGNVCQAGLGQ 439
+ I S +RT +GSF + + A +LGA I + +++A + +V EV +G V AG GQ
Sbjct: 5 IVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQ 64
Query: 440 APCRQAVIFAGLPKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMVAGGMESMSNVPF 499
P RQA + AG+P+ +N++ SG++A+ L Q ++ G ++VAGGMESMS P
Sbjct: 65 NPARQAAMKAGVPQEATAWGMNQLXGSGLRAVALGMQQIATGDASIIVAGGMESMSMAPH 124
Query: 500 YLN-RGETKYGGMNLIDGIVYDGLSDVYNKIHMGNCAENTAKKFNISRDEQDEYALSSYK 558
+ RG K G +ID ++ DGL+D + HMG AEN AK++ +SRDEQD +A++S
Sbjct: 125 CAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQN 184
Query: 559 KSADAYKNNVFSSQIVPVSIPQRKGKADIIVNEDEEYKK-INFEKFKSLATVFQKENGTV 617
K+ A K+ F +IVP + RKG DI V+ DE + + L F KE GTV
Sbjct: 185 KAEAAQKDGRFKDEIVPFIVKGRKG--DITVDADEYIRHGATLDSMAKLRPAFDKE-GTV 241
Query: 618 TAGNASTLNDGAAACVLMTEEAVRKFNAKPLARIIAYFDAATEP 661
TAGNAS LNDGAAA +LM+E + +PL RI+++ +P
Sbjct: 242 TAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDP 285
>pdb|2WKT|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316a Mutant With Coenzyme A
Length = 392
Score = 229 bits (584), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 134/316 (42%), Positives = 184/316 (58%), Gaps = 5/316 (1%)
Query: 1 MGNVCQAGLGQAPCRQAVIFAGLPKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMVA 60
+G V AG GQ P RQA + AG+P+ +N++C SG++A+ L Q ++ G ++VA
Sbjct: 54 LGQVLPAGEGQNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVA 113
Query: 61 GGMESMSNVPFYLN-RGETKYGGMNLIDGIVYDGLSDVYNKIHMGNCAENTAKKFNISRD 119
GGMESMS P + RG K G +ID ++ DGL+D + HMG AEN AK++ +SRD
Sbjct: 114 GGMESMSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRD 173
Query: 120 EQDEYALSSYKKSADAYKNNVFSSQIVPVSIPQRKGKADIIVNEDEEYKK-INFEKFKSL 178
EQD +A++S K+ A K+ F +IVP + RKG DI V+ DE + + L
Sbjct: 174 EQDAFAVASQNKAEAAQKDGRFKDEIVPFIVKGRKG--DITVDADEYIRHGATLDSMAKL 231
Query: 179 ATVFQKENGTVTAGNASTLNDGAAACVLMTEEAVRKFNAKPLARIIAYFDAATEPIDFPI 238
F KE GTVTAGNAS LNDGAAA +LM+E + +PL RI+++ +P
Sbjct: 232 RPAFDKE-GTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGT 290
Query: 239 APAFAIPTLLKNGGVAKQDVALWEINEAFSVVVLANIKKLDIDPSKVNVHGGAVSLGHPI 298
P A L+ G D+ L E EAF+ A K L DPS VNV+GGA+++GHPI
Sbjct: 291 GPIPASRKALERAGWKIGDLDLVEAAEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPI 350
Query: 299 GMSGARIVIHLCHALK 314
G SGARI+ L +K
Sbjct: 351 GASGARILNTLLFEMK 366
Score = 220 bits (561), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 116/284 (40%), Positives = 169/284 (59%), Gaps = 5/284 (1%)
Query: 380 VFIVSGSRTPMGSFRSSLVSLSATKLGAVAIESAIQKANMDKSDVQEVYMGNVCQAGLGQ 439
+ I S +RT +GSF + + A +LGA I + +++A + +V EV +G V AG GQ
Sbjct: 5 IVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQ 64
Query: 440 APCRQAVIFAGLPKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMVAGGMESMSNVPF 499
P RQA + AG+P+ +N++C SG++A+ L Q ++ G ++VAGGMESMS P
Sbjct: 65 NPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMAPH 124
Query: 500 YLN-RGETKYGGMNLIDGIVYDGLSDVYNKIHMGNCAENTAKKFNISRDEQDEYALSSYK 558
+ RG K G +ID ++ DGL+D + HMG AEN AK++ +SRDEQD +A++S
Sbjct: 125 CAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQN 184
Query: 559 KSADAYKNNVFSSQIVPVSIPQRKGKADIIVNEDEEYKK-INFEKFKSLATVFQKENGTV 617
K+ A K+ F +IVP + RKG DI V+ DE + + L F KE GTV
Sbjct: 185 KAEAAQKDGRFKDEIVPFIVKGRKG--DITVDADEYIRHGATLDSMAKLRPAFDKE-GTV 241
Query: 618 TAGNASTLNDGAAACVLMTEEAVRKFNAKPLARIIAYFDAATEP 661
TAGNAS LNDGAAA +LM+E + +PL RI+++ +P
Sbjct: 242 TAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDP 285
>pdb|2WKT|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316a Mutant With Coenzyme A.
pdb|2WKT|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316a Mutant With Coenzyme A.
pdb|2WKT|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316a Mutant With Coenzyme A
Length = 392
Score = 226 bits (575), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 133/316 (42%), Positives = 183/316 (57%), Gaps = 5/316 (1%)
Query: 1 MGNVCQAGLGQAPCRQAVIFAGLPKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMVA 60
+G V AG GQ P RQA + AG+P+ +N++ SG++A+ L Q ++ G ++VA
Sbjct: 54 LGQVLPAGEGQNPARQAAMKAGVPQEATAWGMNQLXGSGLRAVALGMQQIATGDASIIVA 113
Query: 61 GGMESMSNVPFYLN-RGETKYGGMNLIDGIVYDGLSDVYNKIHMGNCAENTAKKFNISRD 119
GGMESMS P + RG K G +ID ++ DGL+D + HMG AEN AK++ +SRD
Sbjct: 114 GGMESMSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRD 173
Query: 120 EQDEYALSSYKKSADAYKNNVFSSQIVPVSIPQRKGKADIIVNEDEEYKK-INFEKFKSL 178
EQD +A++S K+ A K+ F +IVP + RKG DI V+ DE + + L
Sbjct: 174 EQDAFAVASQNKAEAAQKDGRFKDEIVPFIVKGRKG--DITVDADEYIRHGATLDSMAKL 231
Query: 179 ATVFQKENGTVTAGNASTLNDGAAACVLMTEEAVRKFNAKPLARIIAYFDAATEPIDFPI 238
F KE GTVTAGNAS LNDGAAA +LM+E + +PL RI+++ +P
Sbjct: 232 RPAFDKE-GTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGT 290
Query: 239 APAFAIPTLLKNGGVAKQDVALWEINEAFSVVVLANIKKLDIDPSKVNVHGGAVSLGHPI 298
P A L+ G D+ L E EAF+ A K L DPS VNV+GGA+++GHPI
Sbjct: 291 GPIPASRKALERAGWKIGDLDLVEAAEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPI 350
Query: 299 GMSGARIVIHLCHALK 314
G SGARI+ L +K
Sbjct: 351 GASGARILNTLLFEMK 366
Score = 216 bits (551), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 115/284 (40%), Positives = 168/284 (59%), Gaps = 5/284 (1%)
Query: 380 VFIVSGSRTPMGSFRSSLVSLSATKLGAVAIESAIQKANMDKSDVQEVYMGNVCQAGLGQ 439
+ I S +RT +GSF + + A +LGA I + +++A + +V EV +G V AG GQ
Sbjct: 5 IVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQ 64
Query: 440 APCRQAVIFAGLPKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMVAGGMESMSNVPF 499
P RQA + AG+P+ +N++ SG++A+ L Q ++ G ++VAGGMESMS P
Sbjct: 65 NPARQAAMKAGVPQEATAWGMNQLXGSGLRAVALGMQQIATGDASIIVAGGMESMSMAPH 124
Query: 500 YLN-RGETKYGGMNLIDGIVYDGLSDVYNKIHMGNCAENTAKKFNISRDEQDEYALSSYK 558
+ RG K G +ID ++ DGL+D + HMG AEN AK++ +SRDEQD +A++S
Sbjct: 125 CAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQN 184
Query: 559 KSADAYKNNVFSSQIVPVSIPQRKGKADIIVNEDEEYKK-INFEKFKSLATVFQKENGTV 617
K+ A K+ F +IVP + RKG DI V+ DE + + L F KE GTV
Sbjct: 185 KAEAAQKDGRFKDEIVPFIVKGRKG--DITVDADEYIRHGATLDSMAKLRPAFDKE-GTV 241
Query: 618 TAGNASTLNDGAAACVLMTEEAVRKFNAKPLARIIAYFDAATEP 661
TAGNAS LNDGAAA +LM+E + +PL RI+++ +P
Sbjct: 242 TAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDP 285
>pdb|3SS6|A Chain A, Crystal Structure Of The Bacillus Anthracis Acetyl-Coa
Acetyltransferase
pdb|3SS6|B Chain B, Crystal Structure Of The Bacillus Anthracis Acetyl-Coa
Acetyltransferase
Length = 394
Score = 221 bits (564), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 128/306 (41%), Positives = 184/306 (60%), Gaps = 11/306 (3%)
Query: 14 CRQAVIFAGLPKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMVAGGMESMSNVPFYL 73
R A + AG P + T+ + +SGM+AIM A+ + LG +V+VAGG+E+MS+ P+ L
Sbjct: 69 ARTAALAAGFPDTVTGYTIQRQXSSGMQAIMSAAMQIQLGVSEVVVAGGVEAMSSSPYAL 128
Query: 74 NRGETKYGGMNLIDG----IVYDGLSDVYNKIHMGNCAENTAKKFNISRDEQDEYALSSY 129
+ G L G V++ L D + I MG AEN +++ I+R+EQDE AL S+
Sbjct: 129 KQ---HRWGQRLQHGEIRDTVWEVLEDPIHHIMMGETAENLVEQYEITREEQDEVALRSH 185
Query: 130 KKSADAYKNNVFSSQIVPVSIPQRKGKADIIVNEDEEYK-KINFEKFKSLATVFQKENGT 188
+ A ++ F QIVP++I +R+ +++ ++DE + I EK L F+K +G+
Sbjct: 186 TLALKAIESGYFDDQIVPITIKERR--KEVVFSKDEHPRADITAEKLAGLKPAFRK-DGS 242
Query: 189 VTAGNASTLNDGAAACVLMTEEAVRKFNAKPLARIIAYFDAATEPIDFPIAPAFAIPTLL 248
VTAGNAS LNDG+A VLM+EE ++ +PLARI+ Y A +P I PA AI L
Sbjct: 243 VTAGNASGLNDGSAVLVLMSEEKAKEKGLQPLARIVGYSVAGVDPKIMGIGPAPAIRKGL 302
Query: 249 KNGGVAKQDVALWEINEAFSVVVLANIKKLDIDPSKVNVHGGAVSLGHPIGMSGARIVIH 308
+ + +D L EINEAF+ LA K+LD+D KVNV+G V LGHPIG +GARI +
Sbjct: 303 EKVDWSLEDADLLEINEAFAAQYLAVEKELDLDREKVNVNGSGVGLGHPIGCTGARITVS 362
Query: 309 LCHALK 314
L H LK
Sbjct: 363 LIHELK 368
Score = 187 bits (474), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 107/299 (35%), Positives = 174/299 (58%), Gaps = 11/299 (3%)
Query: 379 DVFIVSGSRTPMGSFRSSLVSLSATKLGAVAIESAIQKANMDKSDVQEVYMGNVCQAGLG 438
+V I + R+P+G+F +L +++ +L ++ A+++ ++ +V EV +G+ Q
Sbjct: 6 NVVITAAVRSPIGTFGGALKNVTPVELAVPVLQEAVKRGGVEPHEVDEVILGHCIQRTDE 65
Query: 439 QAPCRQAVIFAGLPKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMVAGGMESMSNVP 498
R A + AG P + T+ + +SGM+AIM A+ + LG +V+VAGG+E+MS+ P
Sbjct: 66 ANTARTAALAAGFPDTVTGYTIQRQXSSGMQAIMSAAMQIQLGVSEVVVAGGVEAMSSSP 125
Query: 499 FYLNRGETKYGGMNLIDG----IVYDGLSDVYNKIHMGNCAENTAKKFNISRDEQDEYAL 554
+ L + G L G V++ L D + I MG AEN +++ I+R+EQDE AL
Sbjct: 126 YALKQ---HRWGQRLQHGEIRDTVWEVLEDPIHHIMMGETAENLVEQYEITREEQDEVAL 182
Query: 555 SSYKKSADAYKNNVFSSQIVPVSIPQRKGKADIIVNEDEEYK-KINFEKFKSLATVFQKE 613
S+ + A ++ F QIVP++I +R + +++ ++DE + I EK L F+K
Sbjct: 183 RSHTLALKAIESGYFDDQIVPITIKER--RKEVVFSKDEHPRADITAEKLAGLKPAFRK- 239
Query: 614 NGTVTAGNASTLNDGAAACVLMTEEAVRKFNAKPLARIIAYFDAATEPIDFPIAPAFAI 672
+G+VTAGNAS LNDG+A VLM+EE ++ +PLARI+ Y A +P I PA AI
Sbjct: 240 DGSVTAGNASGLNDGSAVLVLMSEEKAKEKGLQPLARIVGYSVAGVDPKIMGIGPAPAI 298
>pdb|1ULQ|A Chain A, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|B Chain B, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|C Chain C, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|D Chain D, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|E Chain E, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|F Chain F, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|G Chain G, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|H Chain H, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
Length = 401
Score = 207 bits (527), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 114/314 (36%), Positives = 184/314 (58%), Gaps = 19/314 (6%)
Query: 14 CRQAVIFAGLPKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMVAGGMESMSNVPFYL 73
R A++ AG P TVN++C SG++A+ A++ + G V + G+ESMS P+ +
Sbjct: 67 ARMALLLAGFPVEVAGCTVNRLCGSGLEAVAQAARAIWAGEGKVYIGSGVESMSRAPYAV 126
Query: 74 NRGETKYGGMNLIDGIVYDG----------LSDVYNKIHMGNCAENTAKKFNISRDEQDE 123
+ E + NL+ +YD + +Y MG AEN A+ + I R+EQD
Sbjct: 127 PKPERGFPTGNLV---MYDTTLGWRFVNPKMQALYGTESMGETAENLAEMYGIRREEQDR 183
Query: 124 YALSSYKKSADAYKNNVFSSQIVPVSIPQRKGKADIIVNEDEEYKK-INFEKFKSLATVF 182
+AL S++K+ A++ F ++VPV P ++GK +I+V +DE ++ + EK +L VF
Sbjct: 184 FALLSHQKAVRAWEEGRFQDEVVPV--PVKRGKEEILVEQDEGPRRDTSLEKLAALRPVF 241
Query: 183 QKENGTVTAGNASTLNDGAAACVLMTEEAVRKFNAKPLARIIAYFDAATEPIDFPIAPAF 242
+E GTVTAGN+S LNDGAAA +L++++ + +PLAR+ A A P I P
Sbjct: 242 -REGGTVTAGNSSPLNDGAAAVLLVSDDYAKAHGLRPLARVRAIAVAGVPPRIMGIGPVP 300
Query: 243 AIPTLLKNGGVAKQDVALWEINEAFSVVVLANIKK--LDIDPSKVNVHGGAVSLGHPIGM 300
A L+ G++ D+ L E+NEAF+ LA +++ L ++ ++N +GGA++LGHP+G
Sbjct: 301 ATRKALERAGLSFSDLGLIELNEAFAAQALAVLREWSLSMEDQRLNPNGGAIALGHPLGA 360
Query: 301 SGARIVIHLCHALK 314
SGARI+ L H ++
Sbjct: 361 SGARILTTLVHEMR 374
Score = 179 bits (454), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 107/314 (34%), Positives = 172/314 (54%), Gaps = 18/314 (5%)
Query: 379 DVFIVSGSRTPMGSFRSSLVSLSATKLGAVAIESAIQKANMDKSDVQEVYMGNVCQAGL- 437
+ +IV RTP+G +L S+ L A A+ + ++ + K +V++VY G QAG
Sbjct: 3 EAWIVEAVRTPIGKHGGALASVRPDDLLAHALSVLVDRSGVPKEEVEDVYAGCANQAGED 62
Query: 438 GQAPCRQAVIFAGLPKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMVAGGMESMSNV 497
+ R A++ AG P TVN++C SG++A+ A++ + G V + G+ESMS
Sbjct: 63 NRNVARMALLLAGFPVEVAGCTVNRLCGSGLEAVAQAARAIWAGEGKVYIGSGVESMSRA 122
Query: 498 PFYLNRGETKYGGMNLIDGIVYDG----------LSDVYNKIHMGNCAENTAKKFNISRD 547
P+ + + E + NL+ +YD + +Y MG AEN A+ + I R+
Sbjct: 123 PYAVPKPERGFPTGNLV---MYDTTLGWRFVNPKMQALYGTESMGETAENLAEMYGIRRE 179
Query: 548 EQDEYALSSYKKSADAYKNNVFSSQIVPVSIPQRKGKADIIVNEDEEYKK-INFEKFKSL 606
EQD +AL S++K+ A++ F ++VPV P ++GK +I+V +DE ++ + EK +L
Sbjct: 180 EQDRFALLSHQKAVRAWEEGRFQDEVVPV--PVKRGKEEILVEQDEGPRRDTSLEKLAAL 237
Query: 607 ATVFQKENGTVTAGNASTLNDGAAACVLMTEEAVRKFNAKPLARIIAYFDAATEPIDFPI 666
VF +E GTVTAGN+S LNDGAAA +L++++ + +PLAR+ A A P I
Sbjct: 238 RPVF-REGGTVTAGNSSPLNDGAAAVLLVSDDYAKAHGLRPLARVRAIAVAGVPPRIMGI 296
Query: 667 APAFAIPTLLKNGG 680
P A L+ G
Sbjct: 297 GPVPATRKALERAG 310
>pdb|1AFW|A Chain A, The 1.8 Angstrom Crystal Structure Of The Dimeric
Peroxisomal Thiolase Of Saccharomyces Cerevisiae
pdb|1AFW|B Chain B, The 1.8 Angstrom Crystal Structure Of The Dimeric
Peroxisomal Thiolase Of Saccharomyces Cerevisiae
Length = 393
Score = 184 bits (466), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 113/325 (34%), Positives = 168/325 (51%), Gaps = 18/325 (5%)
Query: 2 GNVCQAGLGQAPCRQAVIFAGLPKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMVAG 61
GNV G G R A + +G+P ST +N+ C+SG+ A+ + + +G D+ +A
Sbjct: 67 GNVLNVGAGATEHRAACLASGIPYSTPFVALNRQCSSGLTAVNDIANKIKVGQIDIGLAL 126
Query: 62 GMESMSNVPFYLNRGETKYGGMNLIDGIVYDGLSDVYNK----IHMGNCAENTAKKFNIS 117
G+ESM+N Y +N + I + L I MG EN A F IS
Sbjct: 127 GVESMTN----------NYKNVNPLGMISSEELQKNREAKKCLIPMGITNENVAANFKIS 176
Query: 118 RDEQDEYALSSYKKSADAYKNNVFSSQIVPVSIPQRKGKADIIVNEDEEYKKINFEKFKS 177
R +QDE+A +SY+K+ A +F +I+P+ +P I +++ + E S
Sbjct: 177 RKDQDEFAANSYQKAYKAKNEGLFEDEILPIKLPD----GSICQSDEGPRPNVTAESLSS 232
Query: 178 LATVFQKENGTVTAGNASTLNDGAAACVLMTEEAVRKFNAKPLARIIAYFDAATEPIDFP 237
+ F K+ GT TAGNAS ++DG A +L + N L R I + P
Sbjct: 233 IRPAFIKDRGTTTAGNASQVSDGVAGVLLARRSVANQLNLPVLGRYIDFQTVGVPPEIMG 292
Query: 238 IAPAFAIPTLLKNGGVAKQDVALWEINEAFSVVVLANIKKLDIDPSKVNVHGGAVSLGHP 297
+ PA+AIP +L+ G+ QD+ ++EINEAF+ L I KL ID +KVN GGA++LGHP
Sbjct: 293 VGPAYAIPKVLEATGLQVQDIDIFEINEAFAAQALYCIHKLGIDLNKVNPRGGAIALGHP 352
Query: 298 IGMSGARIVIHLCHALKSGQKGQLS 322
+G +GAR V + LK Q G +S
Sbjct: 353 LGCTGARQVATILRELKKDQIGVVS 377
Score = 130 bits (328), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 92/314 (29%), Positives = 149/314 (47%), Gaps = 23/314 (7%)
Query: 376 KPGDVFIVSGSRTPMG-SFRSSLVSLSATKLGAVAIESAI----QKANMDKSDVQEVYMG 430
+P DV IV+ +R+ +G F+ + ++ L + I + D + ++EV G
Sbjct: 8 RPEDVVIVAANRSAIGKGFKGAFKDVNTDYLLYNFLNEFIGRFPEPLRADLNLIEEVACG 67
Query: 431 NVCQAGLGQAPCRQAVIFAGLPKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMVAGG 490
NV G G R A + +G+P ST +N+ C+SG+ A+ + + +G D+ +A G
Sbjct: 68 NVLNVGAGATEHRAACLASGIPYSTPFVALNRQCSSGLTAVNDIANKIKVGQIDIGLALG 127
Query: 491 MESMSNVPFYLNRGETKYGGMNLIDGIVYDGLSDVYNK----IHMGNCAENTAKKFNISR 546
+ESM+N Y +N + I + L I MG EN A F ISR
Sbjct: 128 VESMTN----------NYKNVNPLGMISSEELQKNREAKKCLIPMGITNENVAANFKISR 177
Query: 547 DEQDEYALSSYKKSADAYKNNVFSSQIVPVSIPQRKGKADIIVNEDEEYKKINFEKFKSL 606
+QDE+A +SY+K+ A +F +I+P+ +P I +++ + E S+
Sbjct: 178 KDQDEFAANSYQKAYKAKNEGLFEDEILPIKLPD----GSICQSDEGPRPNVTAESLSSI 233
Query: 607 ATVFQKENGTVTAGNASTLNDGAAACVLMTEEAVRKFNAKPLARIIAYFDAATEPIDFPI 666
F K+ GT TAGNAS ++DG A +L + N L R I + P +
Sbjct: 234 RPAFIKDRGTTTAGNASQVSDGVAGVLLARRSVANQLNLPVLGRYIDFQTVGVPPEIMGV 293
Query: 667 APAFAIPTLLKNGG 680
PA+AIP +L+ G
Sbjct: 294 GPAYAIPKVLEATG 307
>pdb|1PXT|A Chain A, The 2.8 Angstroms Structure Of Peroxisomal 3-Ketoacyl-Coa
Thiolase Of Saccharomyces Cerevisiae: A Five Layered
A-B-A- B-A Structure, Constructed From Two Core Domains
Of Identical Topology
pdb|1PXT|B Chain B, The 2.8 Angstroms Structure Of Peroxisomal 3-Ketoacyl-Coa
Thiolase Of Saccharomyces Cerevisiae: A Five Layered
A-B-A- B-A Structure, Constructed From Two Core Domains
Of Identical Topology
Length = 390
Score = 183 bits (465), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 113/325 (34%), Positives = 168/325 (51%), Gaps = 18/325 (5%)
Query: 2 GNVCQAGLGQAPCRQAVIFAGLPKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMVAG 61
GNV G G R A + +G+P ST +N+ C+SG+ A+ + + +G D+ +A
Sbjct: 64 GNVLNVGAGATEHRAACLASGIPYSTPFVALNRQCSSGLTAVNDIANKIKVGQIDIGLAL 123
Query: 62 GMESMSNVPFYLNRGETKYGGMNLIDGIVYDGLSDVYNK----IHMGNCAENTAKKFNIS 117
G+ESM+N Y +N + I + L I MG EN A F IS
Sbjct: 124 GVESMTN----------NYKNVNPLGMISSEELQKNREAKKCLIPMGITNENVAANFKIS 173
Query: 118 RDEQDEYALSSYKKSADAYKNNVFSSQIVPVSIPQRKGKADIIVNEDEEYKKINFEKFKS 177
R +QDE+A +SY+K+ A +F +I+P+ +P I +++ + E S
Sbjct: 174 RKDQDEFAANSYQKAYKAKNEGLFEDEILPIKLPD----GSICQSDEGPRPNVTAESLSS 229
Query: 178 LATVFQKENGTVTAGNASTLNDGAAACVLMTEEAVRKFNAKPLARIIAYFDAATEPIDFP 237
+ F K+ GT TAGNAS ++DG A +L + N L R I + P
Sbjct: 230 IRPAFIKDRGTTTAGNASQVSDGVAGVLLARRSVANQLNLPVLGRYIDFQTVGVPPEIMG 289
Query: 238 IAPAFAIPTLLKNGGVAKQDVALWEINEAFSVVVLANIKKLDIDPSKVNVHGGAVSLGHP 297
+ PA+AIP +L+ G+ QD+ ++EINEAF+ L I KL ID +KVN GGA++LGHP
Sbjct: 290 VGPAYAIPKVLEATGLQVQDIDIFEINEAFAAQALYCIHKLGIDLNKVNPRGGAIALGHP 349
Query: 298 IGMSGARIVIHLCHALKSGQKGQLS 322
+G +GAR V + LK Q G +S
Sbjct: 350 LGCTGARQVATILRELKKDQIGVVS 374
Score = 130 bits (327), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 92/314 (29%), Positives = 149/314 (47%), Gaps = 23/314 (7%)
Query: 376 KPGDVFIVSGSRTPMG-SFRSSLVSLSATKLGAVAIESAI----QKANMDKSDVQEVYMG 430
+P DV IV+ +R+ +G F+ + ++ L + I + D + ++EV G
Sbjct: 5 RPEDVVIVAANRSAIGKGFKGAFKDVNTDYLLYNFLNEFIGRFPEPLRADLNLIEEVACG 64
Query: 431 NVCQAGLGQAPCRQAVIFAGLPKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMVAGG 490
NV G G R A + +G+P ST +N+ C+SG+ A+ + + +G D+ +A G
Sbjct: 65 NVLNVGAGATEHRAACLASGIPYSTPFVALNRQCSSGLTAVNDIANKIKVGQIDIGLALG 124
Query: 491 MESMSNVPFYLNRGETKYGGMNLIDGIVYDGLSDVYNK----IHMGNCAENTAKKFNISR 546
+ESM+N Y +N + I + L I MG EN A F ISR
Sbjct: 125 VESMTN----------NYKNVNPLGMISSEELQKNREAKKCLIPMGITNENVAANFKISR 174
Query: 547 DEQDEYALSSYKKSADAYKNNVFSSQIVPVSIPQRKGKADIIVNEDEEYKKINFEKFKSL 606
+QDE+A +SY+K+ A +F +I+P+ +P I +++ + E S+
Sbjct: 175 KDQDEFAANSYQKAYKAKNEGLFEDEILPIKLPD----GSICQSDEGPRPNVTAESLSSI 230
Query: 607 ATVFQKENGTVTAGNASTLNDGAAACVLMTEEAVRKFNAKPLARIIAYFDAATEPIDFPI 666
F K+ GT TAGNAS ++DG A +L + N L R I + P +
Sbjct: 231 RPAFIKDRGTTTAGNASQVSDGVAGVLLARRSVANQLNLPVLGRYIDFQTVGVPPEIMGV 290
Query: 667 APAFAIPTLLKNGG 680
PA+AIP +L+ G
Sbjct: 291 GPAYAIPKVLEATG 304
>pdb|2IIK|A Chain A, Crystal Structure Of Human Peroxisomal Acetyl-Coa Acyl
Transferase 1 (Acaa1)
pdb|2IIK|B Chain B, Crystal Structure Of Human Peroxisomal Acetyl-Coa Acyl
Transferase 1 (Acaa1)
Length = 418
Score = 175 bits (443), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 116/318 (36%), Positives = 174/318 (54%), Gaps = 14/318 (4%)
Query: 1 MGNVCQAGLGQAPCRQAVIFAGLPKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMVA 60
+GNV Q G G R A + +P++ +TVN+ C+SG++A+ + + G D+ +A
Sbjct: 82 VGNVLQPGAGAIMARIAQFLSDIPETVPLSTVNRQCSSGLQAVASIAGGIRNGSYDIGMA 141
Query: 61 GGMESMSNVPFYLNRGETKYGGMNLIDGIVYDGLSDVYNKIHMGNCAENTAKKFNISRDE 120
G+ESMS +RG L++ + D I MG +EN A++F ISR++
Sbjct: 142 CGVESMS----LADRGNPGNITSRLME---KEKARDCL--IPMGITSENVAERFGISREK 192
Query: 121 QDEYALSSYKKSADAYKNNVFSSQIVPVS--IPQRKG-KADIIVNEDEEYK-KINFEKFK 176
QD +AL+S +K+A A F ++IVPV+ + KG K I V +DE + E
Sbjct: 193 QDTFALASQQKAARAQSKGCFQAEIVPVTTTVHDDKGTKRSITVTQDEGIRPSTTMEGLA 252
Query: 177 SLATVFQKENGTVTAGNASTLNDGAAACVLMTEEAVRKFNAKPLARIIAYFDAATEPIDF 236
L F+K+ G+ TAGN+S ++DGAAA +L + L + +Y P
Sbjct: 253 KLKPAFKKD-GSTTAGNSSQVSDGAAAILLARRSKAEELGLPILGVLRSYAVVGVPPDIM 311
Query: 237 PIAPAFAIPTLLKNGGVAKQDVALWEINEAFSVVVLANIKKLDIDPSKVNVHGGAVSLGH 296
I PA+AIP L+ G+ DV ++EINEAF+ ++KL + P KVN GGAV+LGH
Sbjct: 312 GIGPAYAIPVALQKAGLTVSDVDIFEINEAFASQAAYCVEKLRLPPEKVNPLGGAVALGH 371
Query: 297 PIGMSGARIVIHLCHALK 314
P+G +GAR VI L + LK
Sbjct: 372 PLGCTGARQVITLLNELK 389
Score = 128 bits (322), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 98/325 (30%), Positives = 162/325 (49%), Gaps = 23/325 (7%)
Query: 361 RELAPDAKASRNFASKPGDVFIVSGSRTPM-GSFRSSLVSLSATKLGAVAIESAIQKANM 419
+ +AP A A+ DV +V G RT + + R + +L + + + ++ N+
Sbjct: 21 QSMAPQASAA--------DVVVVHGRRTAICRAGRGGFKDTTPDELLSAVMTAVLKDVNL 72
Query: 420 DKSDVQEVYMGNVCQAGLGQAPCRQAVIFAGLPKSTVCTTVNKVCASGMKAIMLASQTLS 479
+ ++ +GNV Q G G R A + +P++ +TVN+ C+SG++A+ + +
Sbjct: 73 RPEQLGDICVGNVLQPGAGAIMARIAQFLSDIPETVPLSTVNRQCSSGLQAVASIAGGIR 132
Query: 480 LGHQDVMVAGGMESMSNVPFYLNRGETKYGGMNLIDGIVYDGLSDVYNKIHMGNCAENTA 539
G D+ +A G+ESMS +RG L++ + D I MG +EN A
Sbjct: 133 NGSYDIGMACGVESMS----LADRGNPGNITSRLME---KEKARDCL--IPMGITSENVA 183
Query: 540 KKFNISRDEQDEYALSSYKKSADAYKNNVFSSQIVPV--SIPQRKG-KADIIVNEDEEYK 596
++F ISR++QD +AL+S +K+A A F ++IVPV ++ KG K I V +DE +
Sbjct: 184 ERFGISREKQDTFALASQQKAARAQSKGCFQAEIVPVTTTVHDDKGTKRSITVTQDEGIR 243
Query: 597 -KINFEKFKSLATVFQKENGTVTAGNASTLNDGAAACVLMTEEAVRKFNAKPLARIIAYF 655
E L F+K+ G+ TAGN+S ++DGAAA +L + L + +Y
Sbjct: 244 PSTTMEGLAKLKPAFKKD-GSTTAGNSSQVSDGAAAILLARRSKAEELGLPILGVLRSYA 302
Query: 656 DAATEPIDFPIAPAFAIPTLLKNGG 680
P I PA+AIP L+ G
Sbjct: 303 VVGVPPDIMGIGPAYAIPVALQKAG 327
>pdb|2WUA|A Chain A, Structure Of The Peroxisomal 3-Ketoacyl-Coa Thiolase From
Sunflower
pdb|2WUA|B Chain B, Structure Of The Peroxisomal 3-Ketoacyl-Coa Thiolase From
Sunflower
Length = 440
Score = 169 bits (428), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 109/335 (32%), Positives = 181/335 (54%), Gaps = 28/335 (8%)
Query: 1 MGNVCQAGLGQAP-CRQAVIFAGLPKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMV 59
+G+V AG +A CR A +AG P++ TVN+ C+SG++A+ + + G D+ +
Sbjct: 85 VGSVLGAGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGI 144
Query: 60 AGGMESMSNVPFYLNRGETKYGGMNLIDGIVYDGLSDVYNK----IHMGNCAENTAKKFN 115
G+ESM+ P +G V + + + MG +EN A+KF+
Sbjct: 145 GAGLESMTANPMAW-------------EGSVNPKVKTMAQAQDCLLPMGITSENVAQKFS 191
Query: 116 ISRDEQDEYALSSYKKSADAYKNNVFSSQIVPVSI----PQRKGKADIIVNEDEEYKK-I 170
I+R EQD+ A+ S++K+A A F +I+P+ P+ + + ++ D+ +
Sbjct: 192 ITRQEQDQAAVGSHRKTAAATAAGRFKDEIIPIKTKIVDPKTGDEKPVTISVDDGIRPGT 251
Query: 171 NFEKFKSLATVFQKENGTVTAGNASTLNDGAAACVLMTEEAVRKFNAKPLARIIAYFDA- 229
+ L VF+K+ G+ TAG +S ++DGA A +LM + ++ P+ + F A
Sbjct: 252 SLADLAKLKPVFRKD-GSTTAGTSSQVSDGAGAVLLM-KRSIALQKGLPILGVFRTFAAV 309
Query: 230 ATEPIDFPIAPAFAIPTLLKNGGVAKQDVALWEINEAFSVVVLANIKKLDIDPSKVNVHG 289
P I PA AIP +K G+ D+ L+EINEAF+ + KKL+IDP K+NV+G
Sbjct: 310 GVPPSIMGIGPAVAIPAAVKAAGLQIDDIDLFEINEAFASQFVYCQKKLEIDPQKINVNG 369
Query: 290 GAVSLGHPIGMSGARIVIHLCHALKSGQKGQLSQF 324
GA+++GHP+G +GAR V L H +K ++G+ +F
Sbjct: 370 GAMAIGHPLGATGARCVATLLHEMK--RRGRDCRF 402
Score = 121 bits (304), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 89/314 (28%), Positives = 158/314 (50%), Gaps = 27/314 (8%)
Query: 379 DVFIVSGSRTPM-GSFRSSLVSLSATKLGAVAIESAIQKANMDKSDVQEVYMGNVCQAGL 437
DV IV+ R+P+ + R L + A +++ I+K N++ ++V ++ +G+V AG
Sbjct: 34 DVVIVAAYRSPLCKAKRGGLKDTYPDDILAPVLKALIEKTNINPAEVGDIVVGSVLGAGS 93
Query: 438 GQAP-CRQAVIFAGLPKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMVAGGMESMSN 496
+A CR A +AG P++ TVN+ C+SG++A+ + + G D+ + G+ESM+
Sbjct: 94 QRASECRMAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTA 153
Query: 497 VPFYLNRGETKYGGMNLIDGIVYDGLSDVYNK----IHMGNCAENTAKKFNISRDEQDEY 552
P +G V + + + MG +EN A+KF+I+R EQD+
Sbjct: 154 NPMAW-------------EGSVNPKVKTMAQAQDCLLPMGITSENVAQKFSITRQEQDQA 200
Query: 553 ALSSYKKSADAYKNNVFSSQIVPVSI----PQRKGKADIIVNEDEEYKK-INFEKFKSLA 607
A+ S++K+A A F +I+P+ P+ + + ++ D+ + + L
Sbjct: 201 AVGSHRKTAAATAAGRFKDEIIPIKTKIVDPKTGDEKPVTISVDDGIRPGTSLADLAKLK 260
Query: 608 TVFQKENGTVTAGNASTLNDGAAACVLMTEEAVRKFNAKPLARIIAYFDA-ATEPIDFPI 666
VF+K+ G+ TAG +S ++DGA A +LM + ++ P+ + F A P I
Sbjct: 261 PVFRKD-GSTTAGTSSQVSDGAGAVLLM-KRSIALQKGLPILGVFRTFAAVGVPPSIMGI 318
Query: 667 APAFAIPTLLKNGG 680
PA AIP +K G
Sbjct: 319 GPAVAIPAAVKAAG 332
>pdb|2C7Y|A Chain A, Plant Enzyme
pdb|2C7Y|B Chain B, Plant Enzyme
pdb|2C7Z|A Chain A, Plant Enzyme Crystal Form Ii
Length = 404
Score = 169 bits (428), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 105/317 (33%), Positives = 166/317 (52%), Gaps = 19/317 (5%)
Query: 14 CRQAVIFAGLPKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMVAGGMESMSNVPFYL 73
CR A +AG P++ TVN+ C+SG++A+ + + G D+ + G+ESM+ P
Sbjct: 79 CRMAAFYAGFPETVAVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTTNPMAW 138
Query: 74 NRGETKYGGMNLIDGIVYDGLSDVYN-KIHMGNCAENTAKKFNISRDEQDEYALSSYKKS 132
G +N + N + MG +EN A++F +SR EQD+ A+ S++K+
Sbjct: 139 E------GSVNP----AVKKFAQAQNCLLPMGVTSENVAQRFGVSRQEQDQAAVDSHRKA 188
Query: 133 ADAYKNNVFSSQIVPVSI----PQRKGKADIIVNEDEEYK-KINFEKFKSLATVFQKENG 187
A A F +I+PV P+ + I V+ D+ + L VF+K+ G
Sbjct: 189 AAATAAGKFKDEIIPVKTKLVDPKTGDEKPITVSVDDGIRPTTTLASLGKLKPVFKKD-G 247
Query: 188 TVTAGNASTLNDGAAACVLMTEEAVRKFNAKPLARIIAYFDAATEPIDFPIAPAFAIPTL 247
T TAGN+S ++DGA A +LM + L + +P I PA AIP
Sbjct: 248 TTTAGNSSQVSDGAGAVLLMKRSVAMQKGLPVLGVFRTFAAVGVDPAIMGIGPAVAIPAA 307
Query: 248 LKNGGVAKQDVALWEINEAFSVVVLANIKKLDIDPSKVNVHGGAVSLGHPIGMSGARIVI 307
+K G+ D+ L+EINEAF+ + KL +DP K+NV+GGA+++GHP+G +GAR V
Sbjct: 308 VKAAGLELDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGAMAIGHPLGATGARCVA 367
Query: 308 HLCHALKSGQKGQLSQF 324
L H +K ++G+ +F
Sbjct: 368 TLLHEMK--RRGKDCRF 382
Score = 129 bits (325), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 94/310 (30%), Positives = 150/310 (48%), Gaps = 19/310 (6%)
Query: 379 DVFIVSGSRTPM-GSFRSSLVSLSATKLGAVAIESAIQKANMDKSDVQEVYMGNVCQAGL 437
DV IV+ RTP+ S R + L A + + I+K N++ S+V ++ +G V G
Sbjct: 14 DVVIVAAHRTPLCKSKRGNFKDTYPDDLLAPVLRALIEKTNLNPSEVGDIVVGTVLAPGS 73
Query: 438 GQAP-CRQAVIFAGLPKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMVAGGMESMSN 496
+A CR A +AG P++ TVN+ C+SG++A+ + + G D+ + G+ESM+
Sbjct: 74 QRASECRMAAFYAGFPETVAVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTT 133
Query: 497 VPFYLNRGETKYGGMNLIDGIVYDGLSDVYN-KIHMGNCAENTAKKFNISRDEQDEYALS 555
P G +N + N + MG +EN A++F +SR EQD+ A+
Sbjct: 134 NPMAWE------GSVN----PAVKKFAQAQNCLLPMGVTSENVAQRFGVSRQEQDQAAVD 183
Query: 556 SYKKSADAYKNNVFSSQIVPVSI----PQRKGKADIIVNEDEEYK-KINFEKFKSLATVF 610
S++K+A A F +I+PV P+ + I V+ D+ + L VF
Sbjct: 184 SHRKAAAATAAGKFKDEIIPVKTKLVDPKTGDEKPITVSVDDGIRPTTTLASLGKLKPVF 243
Query: 611 QKENGTVTAGNASTLNDGAAACVLMTEEAVRKFNAKPLARIIAYFDAATEPIDFPIAPAF 670
+K+ GT TAGN+S ++DGA A +LM + L + +P I PA
Sbjct: 244 KKD-GTTTAGNSSQVSDGAGAVLLMKRSVAMQKGLPVLGVFRTFAAVGVDPAIMGIGPAV 302
Query: 671 AIPTLLKNGG 680
AIP +K G
Sbjct: 303 AIPAAVKAAG 312
>pdb|2WU9|A Chain A, Crystal Structure Of Peroxisomal Kat2 From Arabidopsis
Thaliana
pdb|2WU9|B Chain B, Crystal Structure Of Peroxisomal Kat2 From Arabidopsis
Thaliana
Length = 442
Score = 169 bits (428), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 105/317 (33%), Positives = 166/317 (52%), Gaps = 19/317 (5%)
Query: 14 CRQAVIFAGLPKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMVAGGMESMSNVPFYL 73
CR A +AG P++ TVN+ C+SG++A+ + + G D+ + G+ESM+ P
Sbjct: 96 CRMAAFYAGFPETVAVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTTNPMAW 155
Query: 74 NRGETKYGGMNLIDGIVYDGLSDVYN-KIHMGNCAENTAKKFNISRDEQDEYALSSYKKS 132
G +N + N + MG +EN A++F +SR EQD+ A+ S++K+
Sbjct: 156 E------GSVN----PAVKKFAQAQNCLLPMGVTSENVAQRFGVSRQEQDQAAVDSHRKA 205
Query: 133 ADAYKNNVFSSQIVPVSI----PQRKGKADIIVNEDEEYK-KINFEKFKSLATVFQKENG 187
A A F +I+PV P+ + I V+ D+ + L VF+K+ G
Sbjct: 206 AAATAAGKFKDEIIPVKTKLVDPKTGDEKPITVSVDDGIRPTTTLASLGKLKPVFKKD-G 264
Query: 188 TVTAGNASTLNDGAAACVLMTEEAVRKFNAKPLARIIAYFDAATEPIDFPIAPAFAIPTL 247
T TAGN+S ++DGA A +LM + L + +P I PA AIP
Sbjct: 265 TTTAGNSSQVSDGAGAVLLMKRSVAMQKGLPVLGVFRTFAAVGVDPAIMGIGPAVAIPAA 324
Query: 248 LKNGGVAKQDVALWEINEAFSVVVLANIKKLDIDPSKVNVHGGAVSLGHPIGMSGARIVI 307
+K G+ D+ L+EINEAF+ + KL +DP K+NV+GGA+++GHP+G +GAR V
Sbjct: 325 VKAAGLELDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGAMAIGHPLGATGARCVA 384
Query: 308 HLCHALKSGQKGQLSQF 324
L H +K ++G+ +F
Sbjct: 385 TLLHEMK--RRGKDCRF 399
Score = 130 bits (327), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 97/327 (29%), Positives = 158/327 (48%), Gaps = 19/327 (5%)
Query: 362 ELAPDAKASRNFASKPGDVFIVSGSRTPM-GSFRSSLVSLSATKLGAVAIESAIQKANMD 420
++A D+ A + + DV IV+ RTP+ S R + L A + + I+K N++
Sbjct: 14 KMAGDSAAYQRTSLYGDDVVIVAAHRTPLCKSKRGNFKDTYPDDLLAPVLRALIEKTNLN 73
Query: 421 KSDVQEVYMGNVCQAGLGQAP-CRQAVIFAGLPKSTVCTTVNKVCASGMKAIMLASQTLS 479
S+V ++ +G V G +A CR A +AG P++ TVN+ C+SG++A+ + +
Sbjct: 74 PSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVAVRTVNRQCSSGLQAVADVAAAIK 133
Query: 480 LGHQDVMVAGGMESMSNVPFYLNRGETKYGGMNLIDGIVYDGLSDVYN-KIHMGNCAENT 538
G D+ + G+ESM+ P G +N + N + MG +EN
Sbjct: 134 AGFYDIGIGAGLESMTTNPMAWE------GSVN----PAVKKFAQAQNCLLPMGVTSENV 183
Query: 539 AKKFNISRDEQDEYALSSYKKSADAYKNNVFSSQIVPVSI----PQRKGKADIIVNEDEE 594
A++F +SR EQD+ A+ S++K+A A F +I+PV P+ + I V+ D+
Sbjct: 184 AQRFGVSRQEQDQAAVDSHRKAAAATAAGKFKDEIIPVKTKLVDPKTGDEKPITVSVDDG 243
Query: 595 YK-KINFEKFKSLATVFQKENGTVTAGNASTLNDGAAACVLMTEEAVRKFNAKPLARIIA 653
+ L VF+K+ GT TAGN+S ++DGA A +LM + L
Sbjct: 244 IRPTTTLASLGKLKPVFKKD-GTTTAGNSSQVSDGAGAVLLMKRSVAMQKGLPVLGVFRT 302
Query: 654 YFDAATEPIDFPIAPAFAIPTLLKNGG 680
+ +P I PA AIP +K G
Sbjct: 303 FAAVGVDPAIMGIGPAVAIPAAVKAAG 329
>pdb|3SVK|A Chain A, Crystal Structure Of Acetyl-Coa Acetyltransferase From
Mycobacterium Avium
pdb|3SVK|B Chain B, Crystal Structure Of Acetyl-Coa Acetyltransferase From
Mycobacterium Avium
Length = 407
Score = 154 bits (390), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 107/328 (32%), Positives = 164/328 (50%), Gaps = 47/328 (14%)
Query: 14 CRQAVIFAGLPKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMVAGGMESMSNVPFYL 73
R AV+ AGLP++T +N+ CASG++A+ A+Q + G D+++AGG+ESMS VP
Sbjct: 74 ARTAVLAAGLPETTGGVQLNRFCASGLEAVNTAAQKVRSGWDDLVLAGGVESMSRVPMGS 133
Query: 74 NRG------ETKYGGMNLIDGIVYDGLSDVYNKIHMGNCAENTAKKFNISRDEQDEYALS 127
+ G ET Y G V G+ A+ A SR++ D YAL
Sbjct: 134 DGGAWATDPETNY-----RIGFVPQGIG-----------ADLIATLEGFSREDVDAYALR 177
Query: 128 SYKKSADAYKNNVFSSQIVPVSIPQRKGKADIIVNEDEEYK-KINFEKFKSLATVF---- 182
S +K+A A+ F+ +VPV R +I++ DE + E L T F
Sbjct: 178 SQQKAAAAWSGGYFAKSVVPV----RDQNGLVILDHDEHMRPDTTMEGLAKLKTAFDGVG 233
Query: 183 ----------------QKENGTVTAGNASTLNDGAAACVLMTEEAVRKFNAKPLARIIAY 226
+K N T GN+S + DGAA ++ +E+A + P ARI+A
Sbjct: 234 EMGGFDDVALQKYHWVEKINHVHTGGNSSGIVDGAALVLVGSEKAGKSQGLTPRARIVAT 293
Query: 227 FDAATEPIDFPIAPAFAIPTLLKNGGVAKQDVALWEINEAFSVVVLANIKKLDIDPSKVN 286
+ ++P+ P A +L G+ D+ L+E+NEAF+ VVL K L+I K+N
Sbjct: 294 ATSGSDPVIMLTGPTPATRKVLDRAGLTIDDIDLFELNEAFASVVLKFQKDLNIPDEKLN 353
Query: 287 VHGGAVSLGHPIGMSGARIVIHLCHALK 314
V+GGA+++GHP+G +GA I + L+
Sbjct: 354 VNGGAIAMGHPLGATGAMITGTMVDELE 381
Score = 110 bits (274), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 95/333 (28%), Positives = 153/333 (45%), Gaps = 52/333 (15%)
Query: 379 DVFIVSGSRTPMGSFRS-SLVSLSATKLGAVAIESAIQK--ANMDKSDVQEVYMGNVCQA 435
+ FI RTP G ++ SL + L V + +++ ++D++ + ++ +G V
Sbjct: 8 EAFIYEAIRTPRGKQKNGSLTEVKPLNL-VVGLVDELRRRYPDLDETLISDMILGVVSPV 66
Query: 436 G-LGQAPCRQAVIFAGLPKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMVAGGMESM 494
G G R AV+ AGLP++T +N+ CASG++A+ A+Q + G D+++AGG+ESM
Sbjct: 67 GDQGGDIARTAVLAAGLPETTGGVQLNRFCASGLEAVNTAAQKVRSGWDDLVLAGGVESM 126
Query: 495 SNVPFYLNRG------ETKYGGMNLIDGIVYDGLSDVYNKIHMGNCAENTAKKFNISRDE 548
S VP + G ET Y G V G+ A+ A SR++
Sbjct: 127 SRVPMGSDGGAWATDPETNY-----RIGFVPQGIG-----------ADLIATLEGFSRED 170
Query: 549 QDEYALSSYKKSADAYKNNVFSSQIVPVSIPQRKGKADIIVNEDEEYK-KINFEKFKSLA 607
D YAL S +K+A A+ F+ +VPV R +I++ DE + E L
Sbjct: 171 VDAYALRSQQKAAAAWSGGYFAKSVVPV----RDQNGLVILDHDEHMRPDTTMEGLAKLK 226
Query: 608 TVF--------------------QKENGTVTAGNASTLNDGAAACVLMTEEAVRKFNAKP 647
T F +K N T GN+S + DGAA ++ +E+A + P
Sbjct: 227 TAFDGVGEMGGFDDVALQKYHWVEKINHVHTGGNSSGIVDGAALVLVGSEKAGKSQGLTP 286
Query: 648 LARIIAYFDAATEPIDFPIAPAFAIPTLLKNGG 680
ARI+A + ++P+ P A +L G
Sbjct: 287 RARIVATATSGSDPVIMLTGPTPATRKVLDRAG 319
>pdb|1WDK|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native2)
pdb|1WDK|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native2)
pdb|1WDL|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form Ii (Native4)
pdb|1WDL|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form Ii (Native4)
pdb|1WDM|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native3)
pdb|1WDM|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native3)
pdb|2D3T|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form V
pdb|2D3T|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form V
Length = 390
Score = 150 bits (378), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 96/304 (31%), Positives = 149/304 (49%), Gaps = 14/304 (4%)
Query: 14 CRQAVIFAGLPKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMVAGGMESMSNVPFYL 73
R A + +P ++ TV+++C S M A+ A+Q + G+ DV V GG+E M +V
Sbjct: 72 ARMASLMTQIPHTSAAQTVSRLCGSSMSALHTAAQAIMTGNGDVFVVGGVEHMGHVSM-- 129
Query: 74 NRGETKYGGMNLIDGIVYDGLSDVYNKIHMGNCAENTAKKFNISRDEQDEYALSSYKKSA 133
M+ +D + L MG AE K ISR++QD +A+ S++ +
Sbjct: 130 ---------MHGVDPNPHMSLYAAKASGMMGLTAEMLGKMHGISREQQDAFAVRSHQLAH 180
Query: 134 DAYKNNVFSSQIVPVSIPQRKGKADIIVNEDEEYKKINFEKFKSLATVFQKENGTVTAGN 193
A F +I+P+ G I ++ E +L F + GTVTAG
Sbjct: 181 KATVEGKFKDEIIPMQGYDENGFLKIFDYDETIRPDTTLESLAALKPAFNPKGGTVTAGT 240
Query: 194 ASTLNDGAAACVLMTEEAVRKFNAKPLARIIAYFDAATEPIDFPIAPAFAIPTLLKNGGV 253
+S + DGA+ ++M+ + + +PLA I + A +P P A LK G+
Sbjct: 241 SSQITDGASCMIVMSAQRAKDLGLEPLAVIRSMAVAGVDPAIMGYGPVPATQKALKRAGL 300
Query: 254 AKQDVALWEINEAF---SVVVLANIKKLDIDPSKVNVHGGAVSLGHPIGMSGARIVIHLC 310
D+ E+NEAF ++ VL ++K LD KVN+HGGA++LGHP G SGARI L
Sbjct: 301 NMADIDFIELNEAFAAQALPVLKDLKVLDKMNEKVNLHGGAIALGHPFGCSGARISGTLL 360
Query: 311 HALK 314
+ +K
Sbjct: 361 NVMK 364
Score = 116 bits (290), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 86/307 (28%), Positives = 139/307 (45%), Gaps = 14/307 (4%)
Query: 377 PGDVFIVSGSRTPMGSFRSSL-VSLSATKLGAVAIESAIQK-ANMDKSDVQEVYMGNVCQ 434
P DV IV RTPMG + + + A + A I +++ + +D +V++V G V Q
Sbjct: 4 PRDVVIVDFGRTPMGRSKGGMHRNTRAEDMSAHLISKVLERNSKVDPGEVEDVIWGCVNQ 63
Query: 435 A-GLGQAPCRQAVIFAGLPKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMVAGGMES 493
G R A + +P ++ TV+++C S M A+ A+Q + G+ DV V GG+E
Sbjct: 64 TLEQGWNIARMASLMTQIPHTSAAQTVSRLCGSSMSALHTAAQAIMTGNGDVFVVGGVEH 123
Query: 494 MSNVPFYLNRGETKYGGMNLIDGIVYDGLSDVYNKIHMGNCAENTAKKFNISRDEQDEYA 553
M +V M+ +D + L MG AE K ISR++QD +A
Sbjct: 124 MGHVSM-----------MHGVDPNPHMSLYAAKASGMMGLTAEMLGKMHGISREQQDAFA 172
Query: 554 LSSYKKSADAYKNNVFSSQIVPVSIPQRKGKADIIVNEDEEYKKINFEKFKSLATVFQKE 613
+ S++ + A F +I+P+ G I ++ E +L F +
Sbjct: 173 VRSHQLAHKATVEGKFKDEIIPMQGYDENGFLKIFDYDETIRPDTTLESLAALKPAFNPK 232
Query: 614 NGTVTAGNASTLNDGAAACVLMTEEAVRKFNAKPLARIIAYFDAATEPIDFPIAPAFAIP 673
GTVTAG +S + DGA+ ++M+ + + +PLA I + A +P P A
Sbjct: 233 GGTVTAGTSSQITDGASCMIVMSAQRAKDLGLEPLAVIRSMAVAGVDPAIMGYGPVPATQ 292
Query: 674 TLLKNGG 680
LK G
Sbjct: 293 KALKRAG 299
>pdb|3GOA|A Chain A, Crystal Structure Of The Salmonella Typhimurium Fada 3-
Ketoacyl-Coa Thiolase
pdb|3GOA|B Chain B, Crystal Structure Of The Salmonella Typhimurium Fada 3-
Ketoacyl-Coa Thiolase
Length = 387
Score = 142 bits (357), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 98/300 (32%), Positives = 154/300 (51%), Gaps = 26/300 (8%)
Query: 15 RQAVIFAGLPKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMVAGGMESMSNVPFYLN 74
R A + A +P S TVN++C S +A+ A++ + G V + GG+E +VP
Sbjct: 70 RNAALLAEIPHSVPAVTVNRLCGSSXQALHDAARXIXTGDAQVCLVGGVEHXGHVP---- 125
Query: 75 RGETKYGGMNLIDGIVYDGLSDVYNKI--HMGNCAENTAKKFNISRDEQDEYALSSYKKS 132
+G +D + GLS K G AE ++ ISR+ QD++A S+ ++
Sbjct: 126 ---XSHG----VD--FHPGLSRNVAKAAGXXGLTAEXLSRLHGISREXQDQFAARSHARA 176
Query: 133 ADAYKNNVFSSQIVPVSIPQRKGKADIIV---NEDEEYK-KINFEKFKSLATVFQKENGT 188
A ++ F ++I+P AD ++ N DE + + E +L F +GT
Sbjct: 177 WAATQSGAFKTEIIPTG----GHDADGVLKQFNYDEVIRPETTVEALSTLRPAFDPVSGT 232
Query: 189 VTAGNASTLNDGAAACVLMTEEAVRKFNAKPLARIIAYFDAATEPIDFPIAPAFAIPTLL 248
VTAG +S L+DGAAA ++ +E R+ KP ARI + +P P A L
Sbjct: 233 VTAGTSSALSDGAAAXLVXSESRARELGLKPRARIRSXAVVGCDPSIXGYGPVPASKLAL 292
Query: 249 KNGGVAKQDVALWEINEAFSVVVLANIKKLDIDPS---KVNVHGGAVSLGHPIGMSGARI 305
K G++ D+ ++E NEAF+ +L IK L + K+N++GGA++LGHP+G SGARI
Sbjct: 293 KKAGLSASDIDVFEXNEAFAAQILPCIKDLGLXEQIDEKINLNGGAIALGHPLGCSGARI 352
Score = 100 bits (248), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 90/311 (28%), Positives = 144/311 (46%), Gaps = 28/311 (9%)
Query: 380 VFIVSGSRTPMGSFRS-SLVSLSATKLGAVAIESAIQK-ANMDKSDVQEVYMGNVCQAGL 437
V IV RTP G + + ++ A L A S + + ++ + + ++Y G V Q L
Sbjct: 4 VVIVDAIRTPXGRSKGGAFRNVRAEDLSAHLXRSLLARNPSLTAATLDDIYWGCVQQT-L 62
Query: 438 GQA--PCRQAVIFAGLPKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMVAGGMESMS 495
Q R A + A +P S TVN++C S +A+ A++ + G V + GG+E
Sbjct: 63 EQGFNIARNAALLAEIPHSVPAVTVNRLCGSSXQALHDAARXIXTGDAQVCLVGGVEHXG 122
Query: 496 NVPFYLNRGETKYGGMNLIDGIVYDGLSDVYNKI--HMGNCAENTAKKFNISRDEQDEYA 553
+VP +G +D + GLS K G AE ++ ISR+ QD++A
Sbjct: 123 HVP-------XSHG----VD--FHPGLSRNVAKAAGXXGLTAEXLSRLHGISREXQDQFA 169
Query: 554 LSSYKKSADAYKNNVFSSQIVPVSIPQRKGKADIIV---NEDEEYK-KINFEKFKSLATV 609
S+ ++ A ++ F ++I+P AD ++ N DE + + E +L
Sbjct: 170 ARSHARAWAATQSGAFKTEIIPTG----GHDADGVLKQFNYDEVIRPETTVEALSTLRPA 225
Query: 610 FQKENGTVTAGNASTLNDGAAACVLMTEEAVRKFNAKPLARIIAYFDAATEPIDFPIAPA 669
F +GTVTAG +S L+DGAAA ++ +E R+ KP ARI + +P P
Sbjct: 226 FDPVSGTVTAGTSSALSDGAAAXLVXSESRARELGLKPRARIRSXAVVGCDPSIXGYGPV 285
Query: 670 FAIPTLLKNGG 680
A LK G
Sbjct: 286 PASKLALKKAG 296
>pdb|2ALM|A Chain A, Crystal Structure Analysis Of A Mutant Beta-Ketoacyl-[acyl
Carrier Protein] Synthase Ii From Streptococcus
Pneumoniae
Length = 431
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 28 VCTTVNKVCASGMKAIMLASQTLSLGHQDVMVAGGMESMSNVPFYL 73
VC ++N C+S AI A +++ G QDVM+ GG E+ S PF +
Sbjct: 176 VCKSINTACSSSNDAIGDAFRSIKFGFQDVMLVGGTEA-SITPFAI 220
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 456 VCTTVNKVCASGMKAIMLASQTLSLGHQDVMVAGGMESMSNVPFYL 501
VC ++N C+S AI A +++ G QDVM+ GG E+ S PF +
Sbjct: 176 VCKSINTACSSSNDAIGDAFRSIKFGFQDVMLVGGTEA-SITPFAI 220
>pdb|1OX0|A Chain A, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae
pdb|1OXH|A Chain A, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
pdb|1OXH|B Chain B, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
pdb|1OXH|C Chain C, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
pdb|1OXH|D Chain D, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
Length = 430
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 28 VCTTVNKVCASGMKAIMLASQTLSLGHQDVMVAGGMESMSNVPFYL 73
VC ++N C+S AI A +++ G QDVM+ GG E+ S PF +
Sbjct: 175 VCKSINTACSSSNDAIGDAFRSIKFGFQDVMLVGGTEA-SITPFAI 219
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 456 VCTTVNKVCASGMKAIMLASQTLSLGHQDVMVAGGMESMSNVPFYL 501
VC ++N C+S AI A +++ G QDVM+ GG E+ S PF +
Sbjct: 175 VCKSINTACSSSNDAIGDAFRSIKFGFQDVMLVGGTEA-SITPFAI 219
>pdb|2RJT|A Chain A, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
pdb|2RJT|D Chain D, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
pdb|2RJT|C Chain C, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
pdb|2RJT|B Chain B, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
Length = 428
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 28 VCTTVNKVCASGMKAIMLASQTLSLGHQDVMVAGGMESMSNVPFYL 73
VC ++N C+S AI A +++ G QDVM+ GG E+ S PF +
Sbjct: 175 VCKSINTACSSSNDAIGDAFRSIKFGFQDVMLVGGTEA-SITPFAI 219
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 456 VCTTVNKVCASGMKAIMLASQTLSLGHQDVMVAGGMESMSNVPFYL 501
VC ++N C+S AI A +++ G QDVM+ GG E+ S PF +
Sbjct: 175 VCKSINTACSSSNDAIGDAFRSIKFGFQDVMLVGGTEA-SITPFAI 219
>pdb|3KZU|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Brucella Melitensis
pdb|3KZU|B Chain B, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Brucella Melitensis
pdb|3KZU|C Chain C, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Brucella Melitensis
Length = 428
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Query: 24 PKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMVAGGMES 65
P +V T CA+G AI A++ ++ G DVMVAGG ES
Sbjct: 170 PNHSVVT----ACATGTHAIGDAARLIAFGDADVMVAGGTES 207
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Query: 452 PKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMVAGGMES 493
P +V T CA+G AI A++ ++ G DVMVAGG ES
Sbjct: 170 PNHSVVT----ACATGTHAIGDAARLIAFGDADVMVAGGTES 207
>pdb|4EWG|A Chain A, Crystal Structure Of A Beta-Ketoacyl Synthase From
Burkholderia Phymatum Stm815
pdb|4EWG|B Chain B, Crystal Structure Of A Beta-Ketoacyl Synthase From
Burkholderia Phymatum Stm815
Length = 412
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 32 VNKVCASGMKAIMLASQTLSLGHQDVMVAGGMESMSN 68
+ CASG +AI A + +++G Q +M+AGG E +S
Sbjct: 164 TSSACASGSQAIGYAYENIAMGKQTLMLAGGAEELSG 200
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 460 VNKVCASGMKAIMLASQTLSLGHQDVMVAGGMESMSN 496
+ CASG +AI A + +++G Q +M+AGG E +S
Sbjct: 164 TSSACASGSQAIGYAYENIAMGKQTLMLAGGAEELSG 200
>pdb|3E60|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Bartonella Henselae
pdb|3E60|B Chain B, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Bartonella Henselae
Length = 424
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 4/45 (8%)
Query: 24 PKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMVAGGMESMSN 68
P +V T C++G AI A++ ++LG DVM+AGG ES N
Sbjct: 166 PNHSVVTA----CSTGAHAIGDAARLIALGDADVMLAGGTESPIN 206
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 4/45 (8%)
Query: 452 PKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMVAGGMESMSN 496
P +V T C++G AI A++ ++LG DVM+AGG ES N
Sbjct: 166 PNHSVVTA----CSTGAHAIGDAARLIALGDADVMLAGGTESPIN 206
>pdb|1W0I|A Chain A, Arabidopsis Thaliana Mitochondrial Kas
pdb|1W0I|B Chain B, Arabidopsis Thaliana Mitochondrial Kas
pdb|2IX4|A Chain A, Arabidopsis Thaliana Mitochondrial Beta-Ketoacyl Acp
Synthase Hexanoic Acid Complex
pdb|2IX4|B Chain B, Arabidopsis Thaliana Mitochondrial Beta-Ketoacyl Acp
Synthase Hexanoic Acid Complex
Length = 431
Score = 32.7 bits (73), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 36 CASGMKAIMLASQTLSLGHQDVMVAGGMES 65
CA+G +I A++ + G DVMVAGG ES
Sbjct: 179 CATGAHSIGDATRMIQFGDADVMVAGGTES 208
Score = 32.7 bits (73), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 464 CASGMKAIMLASQTLSLGHQDVMVAGGMES 493
CA+G +I A++ + G DVMVAGG ES
Sbjct: 179 CATGAHSIGDATRMIQFGDADVMVAGGTES 208
>pdb|2GP6|A Chain A, X-Ray Crystal Structure Of Mycobacterium Tuberculosis
Beta- Ketoacyl Acyl Carrier Protein Synthase Ii (Mtkasb)
pdb|2GP6|B Chain B, X-Ray Crystal Structure Of Mycobacterium Tuberculosis
Beta- Ketoacyl Acyl Carrier Protein Synthase Ii (Mtkasb)
Length = 434
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 25 KSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMVAGGMES 65
K+ V T V+ CASG +AI A Q + LG D + GG+E+
Sbjct: 177 KAGVMTPVS-ACASGAEAIARAWQQIVLGEADAAICGGVET 216
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 453 KSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMVAGGMES 493
K+ V T V+ CASG +AI A Q + LG D + GG+E+
Sbjct: 177 KAGVMTPVS-ACASGAEAIARAWQQIVLGEADAAICGGVET 216
>pdb|1J3N|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl-Carrier Protein)
Synthase Ii From Thermus Thermophilus Hb8
pdb|1J3N|B Chain B, Crystal Structure Of 3-Oxoacyl-(Acyl-Carrier Protein)
Synthase Ii From Thermus Thermophilus Hb8
Length = 408
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Query: 24 PKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMVAGGMES 65
P STV T CA+G A+ A + + LG D+++AGG E+
Sbjct: 153 PSSTVVTA----CATGADALGSALRMIQLGEADLVLAGGTEA 190
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Query: 452 PKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMVAGGMES 493
P STV T CA+G A+ A + + LG D+++AGG E+
Sbjct: 153 PSSTVVTA----CATGADALGSALRMIQLGEADLVLAGGTEA 190
>pdb|1B3N|A Chain A, Beta-Ketoacyl Carrier Protein Synthase As A Drug Target,
Implications From The Crystal Structure Of A Complex
With The Inhibitor Cerulenin.
pdb|1KAS|A Chain A, Beta-Ketoacyl-Acp Synthase Ii From Escherichia Coli
Length = 412
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 31 TVNKVCASGMKAIMLASQTLSLGHQDVMVAGGMESMSN 68
++ C SG+ I A++ ++ G DVMVAGG E S
Sbjct: 158 SIATACTSGVHNIGHAARIIAYGDADVMVAGGAEKAST 195
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 459 TVNKVCASGMKAIMLASQTLSLGHQDVMVAGGMESMSN 496
++ C SG+ I A++ ++ G DVMVAGG E S
Sbjct: 158 SIATACTSGVHNIGHAARIIAYGDADVMVAGGAEKAST 195
>pdb|2GFW|A Chain A, Structure Of Wild Type E. Coli Fabf (Kasii)
Length = 427
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 31 TVNKVCASGMKAIMLASQTLSLGHQDVMVAGGMESMSN 68
++ C SG+ I A++ ++ G DVMVAGG E S
Sbjct: 173 SIATACTSGVHNIGHAARIIAYGDADVMVAGGAEKAST 210
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 459 TVNKVCASGMKAIMLASQTLSLGHQDVMVAGGMESMSN 496
++ C SG+ I A++ ++ G DVMVAGG E S
Sbjct: 173 SIATACTSGVHNIGHAARIIAYGDADVMVAGGAEKAST 210
>pdb|2GFY|A Chain A, Structure Of E. Coli Fabf(K335a) Mutant With Covalently
Linked Dodecanoic Acid
Length = 427
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 31 TVNKVCASGMKAIMLASQTLSLGHQDVMVAGGMESMSN 68
++ C SG+ I A++ ++ G DVMVAGG E S
Sbjct: 173 SIATACTSGVHNIGHAARIIAYGDADVMVAGGAEKAST 210
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 459 TVNKVCASGMKAIMLASQTLSLGHQDVMVAGGMESMSN 496
++ C SG+ I A++ ++ G DVMVAGG E S
Sbjct: 173 SIATACTSGVHNIGHAARIIAYGDADVMVAGGAEKAST 210
>pdb|4G0H|A Chain A, Crystal Structure Of The N-Terminal Domain Of Helicobacter
Pylori Caga Protein
Length = 916
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 51/104 (49%), Gaps = 9/104 (8%)
Query: 57 VMVAGGMESMSNVPFYLNRGETKYGGMNLIDGIVYDGLSDVYNKIH-MGNCAENTAKKFN 115
+++AGG + ++N FYL + + G + ++ NK+ M A+N K N
Sbjct: 364 LVIAGGEKGINNPSFYLYKEDQLTGSQRAL------SQEEIRNKVDFMEFLAQNNTKLDN 417
Query: 116 ISRDEQDEY--ALSSYKKSADAYKNNVFSSQIVPVSIPQRKGKA 157
+S E++++ + ++K + AY + + + +I VS K A
Sbjct: 418 LSEKEKEKFQNEIEDFQKDSKAYLDALGNDRIAFVSKKDTKHSA 461
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 51/104 (49%), Gaps = 9/104 (8%)
Query: 485 VMVAGGMESMSNVPFYLNRGETKYGGMNLIDGIVYDGLSDVYNKIH-MGNCAENTAKKFN 543
+++AGG + ++N FYL + + G + ++ NK+ M A+N K N
Sbjct: 364 LVIAGGEKGINNPSFYLYKEDQLTGSQRAL------SQEEIRNKVDFMEFLAQNNTKLDN 417
Query: 544 ISRDEQDEY--ALSSYKKSADAYKNNVFSSQIVPVSIPQRKGKA 585
+S E++++ + ++K + AY + + + +I VS K A
Sbjct: 418 LSEKEKEKFQNEIEDFQKDSKAYLDALGNDRIAFVSKKDTKHSA 461
>pdb|4DVY|P Chain P, Crystal Structure Of The Helicobacter Pylori Caga
Oncoprotein
Length = 876
Score = 29.3 bits (64), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 51/104 (49%), Gaps = 9/104 (8%)
Query: 57 VMVAGGMESMSNVPFYLNRGETKYGGMNLIDGIVYDGLSDVYNKIH-MGNCAENTAKKFN 115
+++AGG + ++N FYL + + G + ++ NK+ M A+N K N
Sbjct: 364 LVIAGGEKGINNPSFYLYKEDQLTGSQRAL------SQEEIRNKVDFMEFLAQNNTKLDN 417
Query: 116 ISRDEQDEY--ALSSYKKSADAYKNNVFSSQIVPVSIPQRKGKA 157
+S E++++ + ++K + AY + + + +I VS K A
Sbjct: 418 LSEKEKEKFQNEIEDFQKDSKAYLDALGNDRIAFVSKKDTKHSA 461
Score = 29.3 bits (64), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 51/104 (49%), Gaps = 9/104 (8%)
Query: 485 VMVAGGMESMSNVPFYLNRGETKYGGMNLIDGIVYDGLSDVYNKIH-MGNCAENTAKKFN 543
+++AGG + ++N FYL + + G + ++ NK+ M A+N K N
Sbjct: 364 LVIAGGEKGINNPSFYLYKEDQLTGSQRAL------SQEEIRNKVDFMEFLAQNNTKLDN 417
Query: 544 ISRDEQDEY--ALSSYKKSADAYKNNVFSSQIVPVSIPQRKGKA 585
+S E++++ + ++K + AY + + + +I VS K A
Sbjct: 418 LSEKEKEKFQNEIEDFQKDSKAYLDALGNDRIAFVSKKDTKHSA 461
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,184,708
Number of Sequences: 62578
Number of extensions: 961871
Number of successful extensions: 2666
Number of sequences better than 100.0: 52
Number of HSP's better than 100.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2423
Number of HSP's gapped (non-prelim): 111
length of query: 814
length of database: 14,973,337
effective HSP length: 107
effective length of query: 707
effective length of database: 8,277,491
effective search space: 5852186137
effective search space used: 5852186137
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)