RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12877
(814 letters)
>2ib8_A Acetyl-COA acetyltransferase; thiolase fold, potassium ION,
chloride, beta-alpha-beta-ALPH alpha-beta-BETA topology;
HET: MES; 1.85A {Homo sapiens} PDB: 2ib7_A* 2ib9_A*
2ibu_A* 2ibw_A* 2iby_A* 2f2s_A*
Length = 395
Score = 543 bits (1401), Expect = 0.0
Identities = 215/319 (67%), Positives = 261/319 (81%), Gaps = 1/319 (0%)
Query: 1 MGNVCQAGLGQAPCRQAVIFAGLPKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMVA 60
MGNV Q G GQAP RQAV+ AGLP ST CTT+NKVCASGMKAIM+ASQ+L GHQDVMVA
Sbjct: 59 MGNVLQGGEGQAPTRQAVLGAGLPISTPCTTINKVCASGMKAIMMASQSLMCGHQDVMVA 118
Query: 61 GGMESMSNVPFYLNRGETKYGGMNLIDGIVYDGLSDVYNKIHMGNCAENTAKKFNISRDE 120
GGMESMSNVP+ +NRG T YGG+ L D IV DGL+DVYNKIHMG+CAENTAKK NI+R+E
Sbjct: 119 GGMESMSNVPYVMNRGSTPYGGVKLEDLIVKDGLTDVYNKIHMGSCAENTAKKLNIARNE 178
Query: 121 QDEYALSSYKKSADAYKNNVFSSQIVPVSIPQRKGKADIIVNEDEEYKKINFEKFKSLAT 180
QD YA++SY +S A++ F ++++PV++ + D++V EDEEYK+++F K L T
Sbjct: 179 QDAYAINSYTRSKAAWEAGKFGNEVIPVTVTVKGQ-PDVVVKEDEEYKRVDFSKVPKLKT 237
Query: 181 VFQKENGTVTAGNASTLNDGAAACVLMTEEAVRKFNAKPLARIIAYFDAATEPIDFPIAP 240
VFQKENGTVTA NASTLNDGAAA VLMT +A ++ N PLARI+A+ DAA EPIDFPIAP
Sbjct: 238 VFQKENGTVTAANASTLNDGAAALVLMTADAAKRLNVTPLARIVAFADAAVEPIDFPIAP 297
Query: 241 AFAIPTLLKNGGVAKQDVALWEINEAFSVVVLANIKKLDIDPSKVNVHGGAVSLGHPIGM 300
+A +LK+ G+ K+D+A+WE+NEAFS+VVLANIK L+IDP KVN++GGAVSLGHPIGM
Sbjct: 298 VYAASMVLKDVGLKKEDIAMWEVNEAFSLVVLANIKMLEIDPQKVNINGGAVSLGHPIGM 357
Query: 301 SGARIVIHLCHALKSGQKG 319
SGARIV HL HALK G+ G
Sbjct: 358 SGARIVGHLTHALKQGEYG 376
Score = 492 bits (1269), Expect = e-169
Identities = 193/302 (63%), Positives = 239/302 (79%), Gaps = 1/302 (0%)
Query: 379 DVFIVSGSRTPMGSFRSSLVSLSATKLGAVAIESAIQKANMDKSDVQEVYMGNVCQAGLG 438
+V IVS +RTP+GSF SL L ATKLG++AI+ AI+KA + K +V+E YMGNV Q G G
Sbjct: 9 EVVIVSATRTPIGSFLGSLSLLPATKLGSIAIQGAIEKAGIPKEEVKEAYMGNVLQGGEG 68
Query: 439 QAPCRQAVIFAGLPKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMVAGGMESMSNVP 498
QAP RQAV+ AGLP ST CTT+NKVCASGMKAIM+ASQ+L GHQDVMVAGGMESMSNVP
Sbjct: 69 QAPTRQAVLGAGLPISTPCTTINKVCASGMKAIMMASQSLMCGHQDVMVAGGMESMSNVP 128
Query: 499 FYLNRGETKYGGMNLIDGIVYDGLSDVYNKIHMGNCAENTAKKFNISRDEQDEYALSSYK 558
+ +NRG T YGG+ L D IV DGL+DVYNKIHMG+CAENTAKK NI+R+EQD YA++SY
Sbjct: 129 YVMNRGSTPYGGVKLEDLIVKDGLTDVYNKIHMGSCAENTAKKLNIARNEQDAYAINSYT 188
Query: 559 KSADAYKNNVFSSQIVPVSIPQRKGKADIIVNEDEEYKKINFEKFKSLATVFQKENGTVT 618
+S A++ F ++++PV++ + D++V EDEEYK+++F K L TVFQKENGTVT
Sbjct: 189 RSKAAWEAGKFGNEVIPVTVTVKGQ-PDVVVKEDEEYKRVDFSKVPKLKTVFQKENGTVT 247
Query: 619 AGNASTLNDGAAACVLMTEEAVRKFNAKPLARIIAYFDAATEPIDFPIAPAFAIPTLLKN 678
A NASTLNDGAAA VLMT +A ++ N PLARI+A+ DAA EPIDFPIAP +A +LK+
Sbjct: 248 AANASTLNDGAAALVLMTADAAKRLNVTPLARIVAFADAAVEPIDFPIAPVYAASMVLKD 307
Query: 679 GG 680
G
Sbjct: 308 VG 309
>1wl4_A Acetyl-coenzyme A acetyltransferase 2; thiolase fold; HET: COA;
1.55A {Homo sapiens} PDB: 1wl5_A
Length = 397
Score = 457 bits (1179), Expect = e-155
Identities = 137/324 (42%), Positives = 189/324 (58%), Gaps = 7/324 (2%)
Query: 1 MGNVCQAGLGQAPCRQAVIFAGLPKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMVA 60
G+V AG GQ P RQA + AG+P S + +C SG+KA+ LA Q++ +G ++VA
Sbjct: 57 FGHVLAAGCGQNPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAVQSIGIGDSSIVVA 116
Query: 61 GGMESMSNVPFYLN-RGETKYGGMNLIDGIVYDGLSDVYNKIHMGNCAENTAKKFNISRD 119
GGME+MS P R K G M L D I+ DGL+D ++ HMG AEN AKK+ +SR+
Sbjct: 117 GGMENMSKAPHLAYLRTGVKIGEMPLTDSILCDGLTDAFHNCHMGITAENVAKKWQVSRE 176
Query: 120 EQDEYALSSYKKSADAYKNNVFSSQIVPVSIPQRKGKADIIVNEDEE-YKKINFEKFKSL 178
+QD+ A+ S ++ +A K F +IVPV + RKG I V DE N E L
Sbjct: 177 DQDKVAVLSQNRTENAQKAGHFDKEIVPVLVSTRKG--LIEVKTDEFPRHGSNIEAMSKL 234
Query: 179 ATVFQKE-NGTVTAGNASTLNDGAAACVLMTEEAVRKFNAKPLARIIAYFDAATEPIDFP 237
F + GTVT NAS +NDGAAA VLM + K PLARI+++ EP
Sbjct: 235 KPYFLTDGTGTVTPANASGINDGAAAVVLMKKSEADKRGLTPLARIVSWSQVGVEPSIMG 294
Query: 238 IAPAFAIPTLLKNGGVAKQDVALWEINEAFSVVVLANIKKLDIDPSKVNVHGGAVSLGHP 297
I P AI + G + +DV ++EINEAF+ V A +K+L ++P KVN+ GGA++LGHP
Sbjct: 295 IGPIPAIKQAVTKAGWSLEDVDIFEINEAFAAVSAAIVKELGLNPEKVNIEGGAIALGHP 354
Query: 298 IGMSGARIVIHLCHALK--SGQKG 319
+G SG RI++ L H L+ +G
Sbjct: 355 LGASGCRILVTLLHTLERMGRSRG 378
Score = 423 bits (1089), Expect = e-142
Identities = 123/305 (40%), Positives = 169/305 (55%), Gaps = 5/305 (1%)
Query: 379 DVFIVSGSRTPMGSFRSSLVSLSATKLGAVAIESAIQKANMDKSDVQEVYMGNVCQAGLG 438
V IVS +RT +GSF +L ++ LG+ I+ +++A + DV EV G+V AG G
Sbjct: 7 PVVIVSAARTIIGSFNGALAAVPVQDLGSTVIKEVLKRATVAPEDVSEVIFGHVLAAGCG 66
Query: 439 QAPCRQAVIFAGLPKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMVAGGMESMSNVP 498
Q P RQA + AG+P S + +C SG+KA+ LA Q++ +G ++VAGGME+MS P
Sbjct: 67 QNPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAVQSIGIGDSSIVVAGGMENMSKAP 126
Query: 499 FYLN-RGETKYGGMNLIDGIVYDGLSDVYNKIHMGNCAENTAKKFNISRDEQDEYALSSY 557
R K G M L D I+ DGL+D ++ HMG AEN AKK+ +SR++QD+ A+ S
Sbjct: 127 HLAYLRTGVKIGEMPLTDSILCDGLTDAFHNCHMGITAENVAKKWQVSREDQDKVAVLSQ 186
Query: 558 KKSADAYKNNVFSSQIVPVSIPQRKGKADIIVNEDEE-YKKINFEKFKSLATVFQKE-NG 615
++ +A K F +IVPV + RKG I V DE N E L F + G
Sbjct: 187 NRTENAQKAGHFDKEIVPVLVSTRKG--LIEVKTDEFPRHGSNIEAMSKLKPYFLTDGTG 244
Query: 616 TVTAGNASTLNDGAAACVLMTEEAVRKFNAKPLARIIAYFDAATEPIDFPIAPAFAIPTL 675
TVT NAS +NDGAAA VLM + K PLARI+++ EP I P AI
Sbjct: 245 TVTPANASGINDGAAAVVLMKKSEADKRGLTPLARIVSWSQVGVEPSIMGIGPIPAIKQA 304
Query: 676 LKNGG 680
+ G
Sbjct: 305 VTKAG 309
>4e1l_A Acetoacetyl-COA thiolase 2; 3-layer(ABA) sandwich, transferase;
2.00A {Clostridium difficile}
Length = 395
Score = 451 bits (1164), Expect = e-153
Identities = 142/324 (43%), Positives = 203/324 (62%), Gaps = 7/324 (2%)
Query: 1 MGNVCQAGLGQAPCRQAVIFAGLPKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMVA 60
+GNV Q GLGQ RQ I AG+P S TVNK+C SG+K++ LA+Q+++ G DV++A
Sbjct: 56 IGNVLQTGLGQNVARQIAINAGIPNSVPSYTVNKLCGSGLKSVQLAAQSITSGENDVVIA 115
Query: 61 GGMESMSNVPFYLN--RGETKYGGMNLIDGIVYDGLSDVYNKIHMGNCAENTAKKFNISR 118
GG E+MS P+ + R +K G + ++D ++ DGL D +N+ HMG AEN A KF +R
Sbjct: 116 GGTENMSQAPYIVPTARFGSKMGNITMVDSMLTDGLIDAFNQYHMGITAENIATKFEFTR 175
Query: 119 DEQDEYALSSYKKSADAYKNNVFSSQIVPVSIPQRKGKADIIVNEDEEYKK-INFEKFKS 177
+ QD+ AL S K+ +A KNN F +IVPV + R+GK +++DE K + FE
Sbjct: 176 EMQDKLALESQNKAENAIKNNRFKEEIVPVDVLIRRGKI-ETIDKDEYPKLGMTFEGLSK 234
Query: 178 LATVFQKENGTVTAGNASTLNDGAAACVLMTEEAVRKFNAKPLARIIAYFDAATEPIDFP 237
L F+K +GTVTAGNAS +NDGAA +LM+++ + +PLA+I +Y A EP
Sbjct: 235 LKPAFKK-DGTVTAGNASGINDGAAMLILMSQQKADELGIRPLAKIKSYASAGVEPEVMG 293
Query: 238 IAPAFAIPTLLKNGGVAKQDVALWEINEAFSVVVLANIKKLDIDPSKVNVHGGAVSLGHP 297
P A LK G++ D+ L E NEAF+ LA +L ID SK+NV+GGA++LGHP
Sbjct: 294 TGPIPATRKALKKAGLSINDIDLIEANEAFAAQALAVKNELQIDSSKLNVNGGAIALGHP 353
Query: 298 IGMSGARIVIHLCHALK--SGQKG 319
IG SGARI++ L + ++ + G
Sbjct: 354 IGASGARILVTLIYEMQKRKVETG 377
Score = 418 bits (1077), Expect = e-140
Identities = 131/305 (42%), Positives = 188/305 (61%), Gaps = 5/305 (1%)
Query: 379 DVFIVSGSRTPMGSFRSSLVSLSATKLGAVAIESAIQKANMDKSDVQEVYMGNVCQAGLG 438
DV IVS RTP+GSF + SA +LG +A++ AI + ++ S++ EV +GNV Q GLG
Sbjct: 6 DVVIVSAVRTPIGSFGGVFKNTSAVQLGTIAVKEAISRVGLNLSEIDEVIIGNVLQTGLG 65
Query: 439 QAPCRQAVIFAGLPKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMVAGGMESMSNVP 498
Q RQ I AG+P S TVNK+C SG+K++ LA+Q+++ G DV++AGG E+MS P
Sbjct: 66 QNVARQIAINAGIPNSVPSYTVNKLCGSGLKSVQLAAQSITSGENDVVIAGGTENMSQAP 125
Query: 499 FYLN--RGETKYGGMNLIDGIVYDGLSDVYNKIHMGNCAENTAKKFNISRDEQDEYALSS 556
+ + R +K G + ++D ++ DGL D +N+ HMG AEN A KF +R+ QD+ AL S
Sbjct: 126 YIVPTARFGSKMGNITMVDSMLTDGLIDAFNQYHMGITAENIATKFEFTREMQDKLALES 185
Query: 557 YKKSADAYKNNVFSSQIVPVSIPQRKGKADIIVNEDEEYKK-INFEKFKSLATVFQKENG 615
K+ +A KNN F +IVPV + R+GK +++DE K + FE L F+K +G
Sbjct: 186 QNKAENAIKNNRFKEEIVPVDVLIRRGKI-ETIDKDEYPKLGMTFEGLSKLKPAFKK-DG 243
Query: 616 TVTAGNASTLNDGAAACVLMTEEAVRKFNAKPLARIIAYFDAATEPIDFPIAPAFAIPTL 675
TVTAGNAS +NDGAA +LM+++ + +PLA+I +Y A EP P A
Sbjct: 244 TVTAGNASGINDGAAMLILMSQQKADELGIRPLAKIKSYASAGVEPEVMGTGPIPATRKA 303
Query: 676 LKNGG 680
LK G
Sbjct: 304 LKKAG 308
>2vu1_A Acetyl-COA acetyltransferase; acyltransferase, PHB biosynthesis,
thiolase FOL; HET: CSO OPI; 1.51A {Zoogloea ramigera}
PDB: 1nl7_A* 1ou6_A* 2vu0_A* 1m4s_A* 2vu2_A* 2wkv_A*
2wku_A* 1m1t_A 1m3k_A 1m1o_A 1m3z_A* 2vtz_A* 2wl5_A*
2wkt_A* 2wl4_A* 1m4t_A* 2wl6_A 1qfl_A* 1dlv_A* 1dlu_A*
...
Length = 392
Score = 439 bits (1133), Expect = e-148
Identities = 136/323 (42%), Positives = 187/323 (57%), Gaps = 7/323 (2%)
Query: 1 MGNVCQAGLGQAPCRQAVIFAGLPKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMVA 60
+G V AG GQ P RQA + AG+P+ +N++C SG++A+ L Q ++ G ++VA
Sbjct: 54 LGQVLPAGEGQNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVA 113
Query: 61 GGMESMSNVPFYLN-RGETKYGGMNLIDGIVYDGLSDVYNKIHMGNCAENTAKKFNISRD 119
GGMESMS P + RG K G +ID ++ DGL+D + HMG AEN AK++ +SRD
Sbjct: 114 GGMESMSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRD 173
Query: 120 EQDEYALSSYKKSADAYKNNVFSSQIVPVSIPQRKGKADIIVNEDEEYK-KINFEKFKSL 178
EQD +A++S K+ A K+ F +IVP + RKG DI V+ DE + + L
Sbjct: 174 EQDAFAVASQNKAEAAQKDGRFKDEIVPFIVKGRKG--DITVDADEYIRHGATLDSMAKL 231
Query: 179 ATVFQKENGTVTAGNASTLNDGAAACVLMTEEAVRKFNAKPLARIIAYFDAATEPIDFPI 238
F K GTVTAGNAS LNDGAAA +LM+E + +PL RI+++ +P
Sbjct: 232 RPAFDK-EGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGT 290
Query: 239 APAFAIPTLLKNGGVAKQDVALWEINEAFSVVVLANIKKLDIDPSKVNVHGGAVSLGHPI 298
P A L+ G D+ L E NEAF+ A K L DPS VNV+GGA+++GHPI
Sbjct: 291 GPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPI 350
Query: 299 GMSGARIVIHLCHALK--SGQKG 319
G SGARI+ L +K +KG
Sbjct: 351 GASGARILNTLLFEMKRRGARKG 373
Score = 406 bits (1047), Expect = e-135
Identities = 119/304 (39%), Positives = 173/304 (56%), Gaps = 5/304 (1%)
Query: 379 DVFIVSGSRTPMGSFRSSLVSLSATKLGAVAIESAIQKANMDKSDVQEVYMGNVCQAGLG 438
+ I S +RT +GSF + + A +LGA I + +++A + +V EV +G V AG G
Sbjct: 4 SIVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEG 63
Query: 439 QAPCRQAVIFAGLPKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMVAGGMESMSNVP 498
Q P RQA + AG+P+ +N++C SG++A+ L Q ++ G ++VAGGMESMS P
Sbjct: 64 QNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMAP 123
Query: 499 FYLN-RGETKYGGMNLIDGIVYDGLSDVYNKIHMGNCAENTAKKFNISRDEQDEYALSSY 557
+ RG K G +ID ++ DGL+D + HMG AEN AK++ +SRDEQD +A++S
Sbjct: 124 HCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQ 183
Query: 558 KKSADAYKNNVFSSQIVPVSIPQRKGKADIIVNEDEEYK-KINFEKFKSLATVFQKENGT 616
K+ A K+ F +IVP + RKG DI V+ DE + + L F K GT
Sbjct: 184 NKAEAAQKDGRFKDEIVPFIVKGRKG--DITVDADEYIRHGATLDSMAKLRPAFDK-EGT 240
Query: 617 VTAGNASTLNDGAAACVLMTEEAVRKFNAKPLARIIAYFDAATEPIDFPIAPAFAIPTLL 676
VTAGNAS LNDGAAA +LM+E + +PL RI+++ +P P A L
Sbjct: 241 VTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRKAL 300
Query: 677 KNGG 680
+ G
Sbjct: 301 ERAG 304
>4dd5_A Acetyl-COA acetyltransferase; structural genomics, center for
structural genomics of infec diseases, csgid, thiolase;
1.25A {Clostridium difficile}
Length = 396
Score = 438 bits (1130), Expect = e-148
Identities = 137/324 (42%), Positives = 197/324 (60%), Gaps = 8/324 (2%)
Query: 1 MGNVCQAGLGQAPCRQAVIFAGLPKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMVA 60
+G V AGLGQ RQ + AG+P T+N VC SG++++ +ASQ ++LG D+M+
Sbjct: 58 LGGVLTAGLGQNIARQIALGAGIPVEKPAMTINIVCGSGLRSVSMASQLIALGDADIMLV 117
Query: 61 GGMESMSNVPFYLN--RGETKYGGMNLIDGIVYDGLSDVYNKIHMGNCAENTAKKFNISR 118
GG E+MS P+ + R + G +D ++ DGLSD++N HMG AEN A+++NI+R
Sbjct: 118 GGAENMSMSPYLVPSARYGARMGDAAFVDSMIKDGLSDIFNNYHMGITAENIAEQWNITR 177
Query: 119 DEQDEYALSSYKKSADAYKNNVFSSQIVPVSIPQRKGKADIIVNEDEEYKK-INFEKFKS 177
+EQDE AL+S K+ A F +IVPV I RKG D +V++DE K EK
Sbjct: 178 EEQDELALASQNKAEKAQAEGKFDEEIVPVVIKGRKG--DTVVDKDEYIKPGTTMEKLAK 235
Query: 178 LATVFQKENGTVTAGNASTLNDGAAACVLMTEEAVRKFNAKPLARIIAYFDAATEPIDFP 237
L F K++GTVTAGNAS +NDGAA V+M +E + +PLA I++Y A +P
Sbjct: 236 LRPAF-KKDGTVTAGNASGINDGAAMLVVMAKEKAEELGIEPLATIVSYGTAGVDPKIMG 294
Query: 238 IAPAFAIPTLLKNGGVAKQDVALWEINEAFSVVVLANIKKLDIDPSKVNVHGGAVSLGHP 297
P A L+ + +D+ L E NEAF+ +A I+ L+ID +KVNV+GGA+++GHP
Sbjct: 295 YGPVPATKKALEAANMTIEDIDLVEANEAFAAQSVAVIRDLNIDMNKVNVNGGAIAIGHP 354
Query: 298 IGMSGARIVIHLCHALK--SGQKG 319
IG SGARI+ L + +K + G
Sbjct: 355 IGCSGARILTTLLYEMKRRDAKTG 378
Score = 405 bits (1044), Expect = e-135
Identities = 124/305 (40%), Positives = 179/305 (58%), Gaps = 6/305 (1%)
Query: 379 DVFIVSGSRTPMGSFRSSLVSLSATKLGAVAIESAIQKANMDKSDVQEVYMGNVCQAGLG 438
+V I S +RT +GSF + S+SA +LG A + AI++AN+ + E +G V AGLG
Sbjct: 8 EVVIASAARTAVGSFGGAFKSVSAVELGVTAAKEAIKRANITPDMIDESLLGGVLTAGLG 67
Query: 439 QAPCRQAVIFAGLPKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMVAGGMESMSNVP 498
Q RQ + AG+P T+N VC SG++++ +ASQ ++LG D+M+ GG E+MS P
Sbjct: 68 QNIARQIALGAGIPVEKPAMTINIVCGSGLRSVSMASQLIALGDADIMLVGGAENMSMSP 127
Query: 499 FYLN--RGETKYGGMNLIDGIVYDGLSDVYNKIHMGNCAENTAKKFNISRDEQDEYALSS 556
+ + R + G +D ++ DGLSD++N HMG AEN A+++NI+R+EQDE AL+S
Sbjct: 128 YLVPSARYGARMGDAAFVDSMIKDGLSDIFNNYHMGITAENIAEQWNITREEQDELALAS 187
Query: 557 YKKSADAYKNNVFSSQIVPVSIPQRKGKADIIVNEDEEYKK-INFEKFKSLATVFQKENG 615
K+ A F +IVPV I RKG D +V++DE K EK L F K++G
Sbjct: 188 QNKAEKAQAEGKFDEEIVPVVIKGRKG--DTVVDKDEYIKPGTTMEKLAKLRPAF-KKDG 244
Query: 616 TVTAGNASTLNDGAAACVLMTEEAVRKFNAKPLARIIAYFDAATEPIDFPIAPAFAIPTL 675
TVTAGNAS +NDGAA V+M +E + +PLA I++Y A +P P A
Sbjct: 245 TVTAGNASGINDGAAMLVVMAKEKAEELGIEPLATIVSYGTAGVDPKIMGYGPVPATKKA 304
Query: 676 LKNGG 680
L+
Sbjct: 305 LEAAN 309
>3ss6_A Acetyl-COA acetyltransferase; structural genomics, csgid, center
for structural genomics O infectious diseases, alpha
beta; HET: CSO; 1.70A {Bacillus anthracis}
Length = 394
Score = 407 bits (1048), Expect = e-135
Identities = 130/324 (40%), Positives = 191/324 (58%), Gaps = 9/324 (2%)
Query: 1 MGNVCQAGLGQAPCRQAVIFAGLPKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMVA 60
+G+ Q R A + AG P + T+ + C+SGM+AIM A+ + LG +V+VA
Sbjct: 56 LGHCIQRTDEANTARTAALAAGFPDTVTGYTIQRQCSSGMQAIMSAAMQIQLGVSEVVVA 115
Query: 61 GGMESMSNVPFYLN--RGETKYGGMNLIDGIVYDGLSDVYNKIHMGNCAENTAKKFNISR 118
GG+E+MS+ P+ L R + + D + + L D + I MG AEN +++ I+R
Sbjct: 116 GGVEAMSSSPYALKQHRWGQRLQHGEIRDTVW-EVLEDPIHHIMMGETAENLVEQYEITR 174
Query: 119 DEQDEYALSSYKKSADAYKNNVFSSQIVPVSIPQRKGKADIIVNEDEEYKK-INFEKFKS 177
+EQDE AL S+ + A ++ F QIVP++I +R+ +++ ++DE + I EK
Sbjct: 175 EEQDEVALRSHTLALKAIESGYFDDQIVPITIKERRK--EVVFSKDEHPRADITAEKLAG 232
Query: 178 LATVFQKENGTVTAGNASTLNDGAAACVLMTEEAVRKFNAKPLARIIAYFDAATEPIDFP 237
L F +++G+VTAGNAS LNDG+A VLM+EE ++ +PLARI+ Y A +P
Sbjct: 233 LKPAF-RKDGSVTAGNASGLNDGSAVLVLMSEEKAKEKGLQPLARIVGYSVAGVDPKIMG 291
Query: 238 IAPAFAIPTLLKNGGVAKQDVALWEINEAFSVVVLANIKKLDIDPSKVNVHGGAVSLGHP 297
I PA AI L+ + +D L EINEAF+ LA K+LD+D KVNV+G V LGHP
Sbjct: 292 IGPAPAIRKGLEKVDWSLEDADLLEINEAFAAQYLAVEKELDLDREKVNVNGSGVGLGHP 351
Query: 298 IGMSGARIVIHLCHALK--SGQKG 319
IG +GARI + L H LK +KG
Sbjct: 352 IGCTGARITVSLIHELKRRGLEKG 375
Score = 376 bits (968), Expect = e-124
Identities = 106/305 (34%), Positives = 176/305 (57%), Gaps = 7/305 (2%)
Query: 379 DVFIVSGSRTPMGSFRSSLVSLSATKLGAVAIESAIQKANMDKSDVQEVYMGNVCQAGLG 438
+V I + R+P+G+F +L +++ +L ++ A+++ ++ +V EV +G+ Q
Sbjct: 6 NVVITAAVRSPIGTFGGALKNVTPVELAVPVLQEAVKRGGVEPHEVDEVILGHCIQRTDE 65
Query: 439 QAPCRQAVIFAGLPKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMVAGGMESMSNVP 498
R A + AG P + T+ + C+SGM+AIM A+ + LG +V+VAGG+E+MS+ P
Sbjct: 66 ANTARTAALAAGFPDTVTGYTIQRQCSSGMQAIMSAAMQIQLGVSEVVVAGGVEAMSSSP 125
Query: 499 FYLN--RGETKYGGMNLIDGIVYDGLSDVYNKIHMGNCAENTAKKFNISRDEQDEYALSS 556
+ L R + + D + + L D + I MG AEN +++ I+R+EQDE AL S
Sbjct: 126 YALKQHRWGQRLQHGEIRDTVW-EVLEDPIHHIMMGETAENLVEQYEITREEQDEVALRS 184
Query: 557 YKKSADAYKNNVFSSQIVPVSIPQRKGKADIIVNEDEEYKK-INFEKFKSLATVFQKENG 615
+ + A ++ F QIVP++I +R+ +++ ++DE + I EK L F +++G
Sbjct: 185 HTLALKAIESGYFDDQIVPITIKERRK--EVVFSKDEHPRADITAEKLAGLKPAF-RKDG 241
Query: 616 TVTAGNASTLNDGAAACVLMTEEAVRKFNAKPLARIIAYFDAATEPIDFPIAPAFAIPTL 675
+VTAGNAS LNDG+A VLM+EE ++ +PLARI+ Y A +P I PA AI
Sbjct: 242 SVTAGNASGLNDGSAVLVLMSEEKAKEKGLQPLARIVGYSVAGVDPKIMGIGPAPAIRKG 301
Query: 676 LKNGG 680
L+
Sbjct: 302 LEKVD 306
>1afw_A 3-ketoacetyl-COA thiolase; fatty acid metabolism; 1.80A
{Saccharomyces cerevisiae} SCOP: c.95.1.1 c.95.1.1 PDB:
1pxt_A
Length = 393
Score = 373 bits (961), Expect = e-122
Identities = 111/320 (34%), Positives = 163/320 (50%), Gaps = 12/320 (3%)
Query: 1 MGNVCQAGLGQAPCRQAVIFAGLPKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMVA 60
GNV G G R A + +G+P ST +N+ C+SG+ A+ + + +G D+ +A
Sbjct: 66 CGNVLNVGAGATEHRAACLASGIPYSTPFVALNRQCSSGLTAVNDIANKIKVGQIDIGLA 125
Query: 61 GGMESMSNVPFYLNRGETKYGGMNLIDGIVYDGLSDVYNKIHMGNCAENTAKKFNISRDE 120
G+ESM+N +N + + I MG EN A F ISR +
Sbjct: 126 LGVESMTNNYKNVNPLG------MISSEELQKNREAKKCLIPMGITNENVAANFKISRKD 179
Query: 121 QDEYALSSYKKSADAYKNNVFSSQIVPVSIPQRKGKADIIVNEDEEYKK-INFEKFKSLA 179
QDE+A +SY+K+ A +F +I+P+ +P I DE + + E S+
Sbjct: 180 QDEFAANSYQKAYKAKNEGLFEDEILPIKLPDGS-----ICQSDEGPRPNVTAESLSSIR 234
Query: 180 TVFQKENGTVTAGNASTLNDGAAACVLMTEEAVRKFNAKPLARIIAYFDAATEPIDFPIA 239
F K+ GT TAGNAS ++DG A +L + N L R I + P +
Sbjct: 235 PAFIKDRGTTTAGNASQVSDGVAGVLLARRSVANQLNLPVLGRYIDFQTVGVPPEIMGVG 294
Query: 240 PAFAIPTLLKNGGVAKQDVALWEINEAFSVVVLANIKKLDIDPSKVNVHGGAVSLGHPIG 299
PA+AIP +L+ G+ QD+ ++EINEAF+ L I KL ID +KVN GGA++LGHP+G
Sbjct: 295 PAYAIPKVLEATGLQVQDIDIFEINEAFAAQALYCIHKLGIDLNKVNPRGGAIALGHPLG 354
Query: 300 MSGARIVIHLCHALKSGQKG 319
+GAR V + LK Q G
Sbjct: 355 CTGARQVATILRELKKDQIG 374
Score = 322 bits (827), Expect = e-103
Identities = 91/311 (29%), Positives = 146/311 (46%), Gaps = 17/311 (5%)
Query: 376 KPGDVFIVSGSRTPMG-SFRSSLVSLSATKLGAVAIESAIQK----ANMDKSDVQEVYMG 430
+P DV IV+ +R+ +G F+ + ++ L + I + D + ++EV G
Sbjct: 8 RPEDVVIVAANRSAIGKGFKGAFKDVNTDYLLYNFLNEFIGRFPEPLRADLNLIEEVACG 67
Query: 431 NVCQAGLGQAPCRQAVIFAGLPKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMVAGG 490
NV G G R A + +G+P ST +N+ C+SG+ A+ + + +G D+ +A G
Sbjct: 68 NVLNVGAGATEHRAACLASGIPYSTPFVALNRQCSSGLTAVNDIANKIKVGQIDIGLALG 127
Query: 491 MESMSNVPFYLNRGETKYGGMNLIDGIVYDGLSDVYNKIHMGNCAENTAKKFNISRDEQD 550
+ESM+N +N + + I MG EN A F ISR +QD
Sbjct: 128 VESMTNNYKNVNPLG------MISSEELQKNREAKKCLIPMGITNENVAANFKISRKDQD 181
Query: 551 EYALSSYKKSADAYKNNVFSSQIVPVSIPQRKGKADIIVNEDEEYKK-INFEKFKSLATV 609
E+A +SY+K+ A +F +I+P+ +P I DE + + E S+
Sbjct: 182 EFAANSYQKAYKAKNEGLFEDEILPIKLPDGS-----ICQSDEGPRPNVTAESLSSIRPA 236
Query: 610 FQKENGTVTAGNASTLNDGAAACVLMTEEAVRKFNAKPLARIIAYFDAATEPIDFPIAPA 669
F K+ GT TAGNAS ++DG A +L + N L R I + P + PA
Sbjct: 237 FIKDRGTTTAGNASQVSDGVAGVLLARRSVANQLNLPVLGRYIDFQTVGVPPEIMGVGPA 296
Query: 670 FAIPTLLKNGG 680
+AIP +L+ G
Sbjct: 297 YAIPKVLEATG 307
>1ulq_A Putative acetyl-COA acetyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; 3.00A
{Thermus thermophilus} SCOP: c.95.1.1 c.95.1.1
Length = 401
Score = 365 bits (940), Expect = e-119
Identities = 117/332 (35%), Positives = 187/332 (56%), Gaps = 16/332 (4%)
Query: 1 MGNVCQAGL-GQAPCRQAVIFAGLPKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMV 59
G QAG + R A++ AG P TVN++C SG++A+ A++ + G V +
Sbjct: 53 AGCANQAGEDNRNVARMALLLAGFPVEVAGCTVNRLCGSGLEAVAQAARAIWAGEGKVYI 112
Query: 60 AGGMESMSNVPFYLNRGETKY--GGMNLID-----GIVYDGLSDVYNKIHMGNCAENTAK 112
G+ESMS P+ + + E + G + + D V + +Y MG AEN A+
Sbjct: 113 GSGVESMSRAPYAVPKPERGFPTGNLVMYDTTLGWRFVNPKMQALYGTESMGETAENLAE 172
Query: 113 KFNISRDEQDEYALSSYKKSADAYKNNVFSSQIVPVSIPQRKGKADIIVNEDEEYKK-IN 171
+ I R+EQD +AL S++K+ A++ F ++VPV + + K +I+V +DE ++ +
Sbjct: 173 MYGIRREEQDRFALLSHQKAVRAWEEGRFQDEVVPVPVKRGKE--EILVEQDEGPRRDTS 230
Query: 172 FEKFKSLATVFQKENGTVTAGNASTLNDGAAACVLMTEEAVRKFNAKPLARIIAYFDAAT 231
EK +L VF +E GTVTAGN+S LNDGAAA +L++++ + +PLAR+ A A
Sbjct: 231 LEKLAALRPVF-REGGTVTAGNSSPLNDGAAAVLLVSDDYAKAHGLRPLARVRAIAVAGV 289
Query: 232 EPIDFPIAPAFAIPTLLKNGGVAKQDVALWEINEAFSVVVLANIK--KLDIDPSKVNVHG 289
P I P A L+ G++ D+ L E+NEAF+ LA ++ L ++ ++N +G
Sbjct: 290 PPRIMGIGPVPATRKALERAGLSFSDLGLIELNEAFAAQALAVLREWSLSMEDQRLNPNG 349
Query: 290 GAVSLGHPIGMSGARIVIHLCHALK--SGQKG 319
GA++LGHP+G SGARI+ L H ++ Q G
Sbjct: 350 GAIALGHPLGASGARILTTLVHEMRRRKVQFG 381
Score = 341 bits (877), Expect = e-110
Identities = 104/311 (33%), Positives = 169/311 (54%), Gaps = 12/311 (3%)
Query: 379 DVFIVSGSRTPMGSFRSSLVSLSATKLGAVAIESAIQKANMDKSDVQEVYMGNVCQAGL- 437
+ +IV RTP+G +L S+ L A A+ + ++ + K +V++VY G QAG
Sbjct: 3 EAWIVEAVRTPIGKHGGALASVRPDDLLAHALSVLVDRSGVPKEEVEDVYAGCANQAGED 62
Query: 438 GQAPCRQAVIFAGLPKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMVAGGMESMSNV 497
+ R A++ AG P TVN++C SG++A+ A++ + G V + G+ESMS
Sbjct: 63 NRNVARMALLLAGFPVEVAGCTVNRLCGSGLEAVAQAARAIWAGEGKVYIGSGVESMSRA 122
Query: 498 PFYLNRGETKY--GGMNLID-----GIVYDGLSDVYNKIHMGNCAENTAKKFNISRDEQD 550
P+ + + E + G + + D V + +Y MG AEN A+ + I R+EQD
Sbjct: 123 PYAVPKPERGFPTGNLVMYDTTLGWRFVNPKMQALYGTESMGETAENLAEMYGIRREEQD 182
Query: 551 EYALSSYKKSADAYKNNVFSSQIVPVSIPQRKGKADIIVNEDEEYKK-INFEKFKSLATV 609
+AL S++K+ A++ F ++VPV + + K +I+V +DE ++ + EK +L V
Sbjct: 183 RFALLSHQKAVRAWEEGRFQDEVVPVPVKRGKE--EILVEQDEGPRRDTSLEKLAALRPV 240
Query: 610 FQKENGTVTAGNASTLNDGAAACVLMTEEAVRKFNAKPLARIIAYFDAATEPIDFPIAPA 669
F +E GTVTAGN+S LNDGAAA +L++++ + +PLAR+ A A P I P
Sbjct: 241 F-REGGTVTAGNSSPLNDGAAAVLLVSDDYAKAHGLRPLARVRAIAVAGVPPRIMGIGPV 299
Query: 670 FAIPTLLKNGG 680
A L+ G
Sbjct: 300 PATRKALERAG 310
>2iik_A 3-ketoacyl-COA thiolase, peroxisomal; fatty acid metabolism,
structural genomics, structural genom consortium, SGC,
transferase; 2.55A {Homo sapiens}
Length = 418
Score = 353 bits (907), Expect = e-114
Identities = 114/318 (35%), Positives = 169/318 (53%), Gaps = 14/318 (4%)
Query: 1 MGNVCQAGLGQAPCRQAVIFAGLPKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMVA 60
+GNV Q G G R A + +P++ +TVN+ C+SG++A+ + + G D+ +A
Sbjct: 82 VGNVLQPGAGAIMARIAQFLSDIPETVPLSTVNRQCSSGLQAVASIAGGIRNGSYDIGMA 141
Query: 61 GGMESMSNVPFYLNRGETKYGGMNLIDGIVYDGLSDVYNKIHMGNCAENTAKKFNISRDE 120
G+ESMS T + D I MG +EN A++F ISR++
Sbjct: 142 CGVESMSLADRGNPGNITSRLMEK-------EKARDCL--IPMGITSENVAERFGISREK 192
Query: 121 QDEYALSSYKKSADAYKNNVFSSQIVPVS--IPQRKG-KADIIVNEDEEYKK-INFEKFK 176
QD +AL+S +K+A A F ++IVPV+ + KG K I V +DE + E
Sbjct: 193 QDTFALASQQKAARAQSKGCFQAEIVPVTTTVHDDKGTKRSITVTQDEGIRPSTTMEGLA 252
Query: 177 SLATVFQKENGTVTAGNASTLNDGAAACVLMTEEAVRKFNAKPLARIIAYFDAATEPIDF 236
L F K++G+ TAGN+S ++DGAAA +L + L + +Y P
Sbjct: 253 KLKPAF-KKDGSTTAGNSSQVSDGAAAILLARRSKAEELGLPILGVLRSYAVVGVPPDIM 311
Query: 237 PIAPAFAIPTLLKNGGVAKQDVALWEINEAFSVVVLANIKKLDIDPSKVNVHGGAVSLGH 296
I PA+AIP L+ G+ DV ++EINEAF+ ++KL + P KVN GGAV+LGH
Sbjct: 312 GIGPAYAIPVALQKAGLTVSDVDIFEINEAFASQAAYCVEKLRLPPEKVNPLGGAVALGH 371
Query: 297 PIGMSGARIVIHLCHALK 314
P+G +GAR VI L + LK
Sbjct: 372 PLGCTGARQVITLLNELK 389
Score = 304 bits (782), Expect = 5e-96
Identities = 92/310 (29%), Positives = 150/310 (48%), Gaps = 15/310 (4%)
Query: 376 KPGDVFIVSGSRTPMG-SFRSSLVSLSATKLGAVAIESAIQKANMDKSDVQEVYMGNVCQ 434
DV +V G RT + + R + +L + + + ++ N+ + ++ +GNV Q
Sbjct: 28 SAADVVVVHGRRTAICRAGRGGFKDTTPDELLSAVMTAVLKDVNLRPEQLGDICVGNVLQ 87
Query: 435 AGLGQAPCRQAVIFAGLPKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMVAGGMESM 494
G G R A + +P++ +TVN+ C+SG++A+ + + G D+ +A G+ESM
Sbjct: 88 PGAGAIMARIAQFLSDIPETVPLSTVNRQCSSGLQAVASIAGGIRNGSYDIGMACGVESM 147
Query: 495 SNVPFYLNRGETKYGGMNLIDGIVYDGLSDVYNKIHMGNCAENTAKKFNISRDEQDEYAL 554
S T + D I MG +EN A++F ISR++QD +AL
Sbjct: 148 SLADRGNPGNITSRLMEK-------EKARDCL--IPMGITSENVAERFGISREKQDTFAL 198
Query: 555 SSYKKSADAYKNNVFSSQIVPVS--IPQRKG-KADIIVNEDEEYKK-INFEKFKSLATVF 610
+S +K+A A F ++IVPV+ + KG K I V +DE + E L F
Sbjct: 199 ASQQKAARAQSKGCFQAEIVPVTTTVHDDKGTKRSITVTQDEGIRPSTTMEGLAKLKPAF 258
Query: 611 QKENGTVTAGNASTLNDGAAACVLMTEEAVRKFNAKPLARIIAYFDAATEPIDFPIAPAF 670
K++G+ TAGN+S ++DGAAA +L + L + +Y P I PA+
Sbjct: 259 -KKDGSTTAGNSSQVSDGAAAILLARRSKAEELGLPILGVLRSYAVVGVPPDIMGIGPAY 317
Query: 671 AIPTLLKNGG 680
AIP L+ G
Sbjct: 318 AIPVALQKAG 327
>1wdk_C 3-ketoacyl-COA thiolase; alpha2BETA2 heterotetrameric complex,
lyase, oxidoreductase/transferase complex, lyase; HET:
ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: c.95.1.1
c.95.1.1 PDB: 1wdl_C* 1wdm_C* 2d3t_C*
Length = 390
Score = 349 bits (897), Expect = e-113
Identities = 102/326 (31%), Positives = 152/326 (46%), Gaps = 19/326 (5%)
Query: 1 MGNVCQAG-LGQAPCRQAVIFAGLPKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMV 59
G V Q G R A + +P ++ TV+++C S M A+ A+Q + G+ DV V
Sbjct: 58 WGCVNQTLEQGWNIARMASLMTQIPHTSAAQTVSRLCGSSMSALHTAAQAIMTGNGDVFV 117
Query: 60 AGGMESMSNVPFYLNRGETKYGGMNLIDGIVYDGLSDVYNKIHMGNCAENTAKKFNISRD 119
GG+E M +V +D + L MG AE K ISR+
Sbjct: 118 VGGVEHMGHVSM----------MHG-VDPNPHMSLYAAKASGMMGLTAEMLGKMHGISRE 166
Query: 120 EQDEYALSSYKKSADAYKNNVFSSQIVPVSIPQRKGKADIIVNEDEEYKK-INFEKFKSL 178
+QD +A+ S++ + A F +I+P+ G I + DE + E +L
Sbjct: 167 QQDAFAVRSHQLAHKATVEGKFKDEIIPMQGYDENGFL-KIFDYDETIRPDTTLESLAAL 225
Query: 179 ATVFQKENGTVTAGNASTLNDGAAACVLMTEEAVRKFNAKPLARIIAYFDAATEPIDFPI 238
F + GTVTAG +S + DGA+ ++M+ + + +PLA I + A +P
Sbjct: 226 KPAFNPKGGTVTAGTSSQITDGASCMIVMSAQRAKDLGLEPLAVIRSMAVAGVDPAIMGY 285
Query: 239 APAFAIPTLLKNGGVAKQDVALWEINEAFSVVVLANIKKL---DIDPSKVNVHGGAVSLG 295
P A LK G+ D+ E+NEAF+ L +K L D KVN+HGGA++LG
Sbjct: 286 GPVPATQKALKRAGLNMADIDFIELNEAFAAQALPVLKDLKVLDKMNEKVNLHGGAIALG 345
Query: 296 HPIGMSGARIVIHLCHALK--SGQKG 319
HP G SGARI L + +K G G
Sbjct: 346 HPFGCSGARISGTLLNVMKQNGGTFG 371
Score = 312 bits (802), Expect = 3e-99
Identities = 87/306 (28%), Positives = 137/306 (44%), Gaps = 16/306 (5%)
Query: 379 DVFIVSGSRTPMG-SFRSSLVSLSATKLGAVAIESAIQK-ANMDKSDVQEVYMGNVCQAG 436
DV IV RTPMG S + A + A I +++ + +D +V++V G V Q
Sbjct: 6 DVVIVDFGRTPMGRSKGGMHRNTRAEDMSAHLISKVLERNSKVDPGEVEDVIWGCVNQTL 65
Query: 437 -LGQAPCRQAVIFAGLPKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMVAGGMESMS 495
G R A + +P ++ TV+++C S M A+ A+Q + G+ DV V GG+E M
Sbjct: 66 EQGWNIARMASLMTQIPHTSAAQTVSRLCGSSMSALHTAAQAIMTGNGDVFVVGGVEHMG 125
Query: 496 NVPFYLNRGETKYGGMNLIDGIVYDGLSDVYNKIHMGNCAENTAKKFNISRDEQDEYALS 555
+V +D + L MG AE K ISR++QD +A+
Sbjct: 126 HVSM----------MHG-VDPNPHMSLYAAKASGMMGLTAEMLGKMHGISREQQDAFAVR 174
Query: 556 SYKKSADAYKNNVFSSQIVPVSIPQRKGKADIIVNEDEEYKK-INFEKFKSLATVFQKEN 614
S++ + A F +I+P+ G I + DE + E +L F +
Sbjct: 175 SHQLAHKATVEGKFKDEIIPMQGYDENGFL-KIFDYDETIRPDTTLESLAALKPAFNPKG 233
Query: 615 GTVTAGNASTLNDGAAACVLMTEEAVRKFNAKPLARIIAYFDAATEPIDFPIAPAFAIPT 674
GTVTAG +S + DGA+ ++M+ + + +PLA I + A +P P A
Sbjct: 234 GTVTAGTSSQITDGASCMIVMSAQRAKDLGLEPLAVIRSMAVAGVDPAIMGYGPVPATQK 293
Query: 675 LLKNGG 680
LK G
Sbjct: 294 ALKRAG 299
>2wu9_A 3-ketoacyl-COA thiolase 2, peroxisomal; cysteine oxidation, fatty
acid metabolism, oxylipin biosynthesis, plant lipid
metabolism; 1.50A {Arabidopsis thaliana} PDB: 2c7y_A
2c7z_A 2wua_A
Length = 442
Score = 349 bits (897), Expect = e-112
Identities = 105/320 (32%), Positives = 164/320 (51%), Gaps = 16/320 (5%)
Query: 1 MGNVCQAGLGQA-PCRQAVIFAGLPKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMV 59
+G V G +A CR A +AG P++ TVN+ C+SG++A+ + + G D+ +
Sbjct: 82 VGTVLAPGSQRASECRMAAFYAGFPETVAVRTVNRQCSSGLQAVADVAAAIKAGFYDIGI 141
Query: 60 AGGMESMSNVPFYLNRGETKYGGMNLIDGIVYDGLSDVYNKIHMGNCAENTAKKFNISRD 119
G+ESM+ P ++ V + MG +EN A++F +SR
Sbjct: 142 GAGLESMTTNP---------MAWEGSVNPAVKKFAQAQNCLLPMGVTSENVAQRFGVSRQ 192
Query: 120 EQDEYALSSYKKSADAYKNNVFSSQIVPVS---IPQRKGKA-DIIVNEDEEYKK-INFEK 174
EQD+ A+ S++K+A A F +I+PV + + G I V+ D+ +
Sbjct: 193 EQDQAAVDSHRKAAAATAAGKFKDEIIPVKTKLVDPKTGDEKPITVSVDDGIRPTTTLAS 252
Query: 175 FKSLATVFQKENGTVTAGNASTLNDGAAACVLMTEEAVRKFNAKPLARIIAYFDAATEPI 234
L VF K++GT TAGN+S ++DGA A +LM + L + +P
Sbjct: 253 LGKLKPVF-KKDGTTTAGNSSQVSDGAGAVLLMKRSVAMQKGLPVLGVFRTFAAVGVDPA 311
Query: 235 DFPIAPAFAIPTLLKNGGVAKQDVALWEINEAFSVVVLANIKKLDIDPSKVNVHGGAVSL 294
I PA AIP +K G+ D+ L+EINEAF+ + KL +DP K+NV+GGA+++
Sbjct: 312 IMGIGPAVAIPAAVKAAGLELDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGAMAI 371
Query: 295 GHPIGMSGARIVIHLCHALK 314
GHP+G +GAR V L H +K
Sbjct: 372 GHPLGATGARCVATLLHEMK 391
Score = 304 bits (780), Expect = 2e-95
Identities = 95/325 (29%), Positives = 155/325 (47%), Gaps = 17/325 (5%)
Query: 363 LAPDAKASRNFASKPGDVFIVSGSRTPMG-SFRSSLVSLSATKLGAVAIESAIQKANMDK 421
+A D+ A + + DV IV+ RTP+ S R + L A + + I+K N++
Sbjct: 15 MAGDSAAYQRTSLYGDDVVIVAAHRTPLCKSKRGNFKDTYPDDLLAPVLRALIEKTNLNP 74
Query: 422 SDVQEVYMGNVCQAGLGQA-PCRQAVIFAGLPKSTVCTTVNKVCASGMKAIMLASQTLSL 480
S+V ++ +G V G +A CR A +AG P++ TVN+ C+SG++A+ + +
Sbjct: 75 SEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVAVRTVNRQCSSGLQAVADVAAAIKA 134
Query: 481 GHQDVMVAGGMESMSNVPFYLNRGETKYGGMNLIDGIVYDGLSDVYNKIHMGNCAENTAK 540
G D+ + G+ESM+ P ++ V + MG +EN A+
Sbjct: 135 GFYDIGIGAGLESMTTNP---------MAWEGSVNPAVKKFAQAQNCLLPMGVTSENVAQ 185
Query: 541 KFNISRDEQDEYALSSYKKSADAYKNNVFSSQIVPVS---IPQRKGKA-DIIVNEDEEYK 596
+F +SR EQD+ A+ S++K+A A F +I+PV + + G I V+ D+ +
Sbjct: 186 RFGVSRQEQDQAAVDSHRKAAAATAAGKFKDEIIPVKTKLVDPKTGDEKPITVSVDDGIR 245
Query: 597 K-INFEKFKSLATVFQKENGTVTAGNASTLNDGAAACVLMTEEAVRKFNAKPLARIIAYF 655
L VF K++GT TAGN+S ++DGA A +LM + L +
Sbjct: 246 PTTTLASLGKLKPVF-KKDGTTTAGNSSQVSDGAGAVLLMKRSVAMQKGLPVLGVFRTFA 304
Query: 656 DAATEPIDFPIAPAFAIPTLLKNGG 680
+P I PA AIP +K G
Sbjct: 305 AVGVDPAIMGIGPAVAIPAAVKAAG 329
>3goa_A 3-ketoacyl-COA thiolase; metabolism, fatty acid, phospholipid,
IDP01071, acyltransferase, cytoplasm, fatty acid
metabolism; 1.70A {Salmonella typhimurium}
Length = 387
Score = 332 bits (854), Expect = e-107
Identities = 100/320 (31%), Positives = 158/320 (49%), Gaps = 19/320 (5%)
Query: 1 MGNVCQAG-LGQAPCRQAVIFAGLPKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMV 59
G V Q G R A + A +P S TVN++C S M+A+ A++ + G V +
Sbjct: 55 WGCVQQTLEQGFNIARNAALLAEIPHSVPAVTVNRLCGSSMQALHDAARMIMTGDAQVCL 114
Query: 60 AGGMESMSNVPFYLNRGETKYGGMNL-IDGIVYDGLSDVYNKIHMGNCAENTAKKFNISR 118
GG+E M +VP + + ++ MG AE ++ ISR
Sbjct: 115 VGGVEHMGHVPM----------SHGVDFHPGLSRNVAKAA--GMMGLTAEMLSRLHGISR 162
Query: 119 DEQDEYALSSYKKSADAYKNNVFSSQIVPVSIPQRKGKADIIVNEDEEYKK-INFEKFKS 177
+ QD++A S+ ++ A ++ F ++I+P G N DE + E +
Sbjct: 163 EMQDQFAARSHARAWAATQSGAFKTEIIPTGGHDADGVL-KQFNYDEVIRPETTVEALST 221
Query: 178 LATVFQKENGTVTAGNASTLNDGAAACVLMTEEAVRKFNAKPLARIIAYFDAATEPIDFP 237
L F +GTVTAG +S L+DGAAA ++M+E R+ KP ARI + +P
Sbjct: 222 LRPAFDPVSGTVTAGTSSALSDGAAAMLVMSESRARELGLKPRARIRSMAVVGCDPSIMG 281
Query: 238 IAPAFAIPTLLKNGGVAKQDVALWEINEAFSVVVLANIKKLDIDPS---KVNVHGGAVSL 294
P A LK G++ D+ ++E+NEAF+ +L IK L + K+N++GGA++L
Sbjct: 282 YGPVPASKLALKKAGLSASDIDVFEMNEAFAAQILPCIKDLGLMEQIDEKINLNGGAIAL 341
Query: 295 GHPIGMSGARIVIHLCHALK 314
GHP+G SGARI L + ++
Sbjct: 342 GHPLGCSGARISTTLINLME 361
Score = 294 bits (755), Expect = 2e-92
Identities = 88/307 (28%), Positives = 140/307 (45%), Gaps = 18/307 (5%)
Query: 379 DVFIVSGSRTPMG-SFRSSLVSLSATKLGAVAIESAIQK-ANMDKSDVQEVYMGNVCQAG 436
V IV RTPMG S + ++ A L A + S + + ++ + + ++Y G V Q
Sbjct: 3 QVVIVDAIRTPMGRSKGGAFRNVRAEDLSAHLMRSLLARNPSLTAATLDDIYWGCVQQTL 62
Query: 437 -LGQAPCRQAVIFAGLPKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMVAGGMESMS 495
G R A + A +P S TVN++C S M+A+ A++ + G V + GG+E M
Sbjct: 63 EQGFNIARNAALLAEIPHSVPAVTVNRLCGSSMQALHDAARMIMTGDAQVCLVGGVEHMG 122
Query: 496 NVPFYLNRGETKYGGMNL-IDGIVYDGLSDVYNKIHMGNCAENTAKKFNISRDEQDEYAL 554
+VP + + ++ MG AE ++ ISR+ QD++A
Sbjct: 123 HVPM----------SHGVDFHPGLSRNVAKAA--GMMGLTAEMLSRLHGISREMQDQFAA 170
Query: 555 SSYKKSADAYKNNVFSSQIVPVSIPQRKGKADIIVNEDEEYKK-INFEKFKSLATVFQKE 613
S+ ++ A ++ F ++I+P G N DE + E +L F
Sbjct: 171 RSHARAWAATQSGAFKTEIIPTGGHDADGVL-KQFNYDEVIRPETTVEALSTLRPAFDPV 229
Query: 614 NGTVTAGNASTLNDGAAACVLMTEEAVRKFNAKPLARIIAYFDAATEPIDFPIAPAFAIP 673
+GTVTAG +S L+DGAAA ++M+E R+ KP ARI + +P P A
Sbjct: 230 SGTVTAGTSSALSDGAAAMLVMSESRARELGLKPRARIRSMAVVGCDPSIMGYGPVPASK 289
Query: 674 TLLKNGG 680
LK G
Sbjct: 290 LALKKAG 296
>3svk_A Acetyl-COA acetyltransferase; ssgcid, NIH, niaid, SBRI, UW, emerald
biostructures, structu genomics; 2.20A {Mycobacterium
avium}
Length = 407
Score = 282 bits (724), Expect = 1e-87
Identities = 106/337 (31%), Positives = 165/337 (48%), Gaps = 38/337 (11%)
Query: 1 MGNVCQAGLGQAPC--RQAVIFAGLPKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVM 58
+G V G Q R AV+ AGLP++T +N+ CASG++A+ A+Q + G D++
Sbjct: 60 LGVVSPVG-DQGGDIARTAVLAAGLPETTGGVQLNRFCASGLEAVNTAAQKVRSGWDDLV 118
Query: 59 VAGGMESMSNVPFYLNRGETKYGGMNLIDGIVYDGLSDVYNKIHMGNCAENTAKKFNISR 118
+AGG+ESMS VP + G + + + G A+ A SR
Sbjct: 119 LAGGVESMSRVPMGSDGG---AWATDP-------ETNYRIGFVPQGIGADLIATLEGFSR 168
Query: 119 DEQDEYALSSYKKSADAYKNNVFSSQIVPVSIPQRKGKADIIVNEDEEYKK-INFEKFKS 177
++ D YAL S +K+A A+ F+ +VPV R +I++ DE + E
Sbjct: 169 EDVDAYALRSQQKAAAAWSGGYFAKSVVPV----RDQNGLVILDHDEHMRPDTTMEGLAK 224
Query: 178 LATVFQ--------------------KENGTVTAGNASTLNDGAAACVLMTEEAVRKFNA 217
L T F K N T GN+S + DGAA ++ +E+A +
Sbjct: 225 LKTAFDGVGEMGGFDDVALQKYHWVEKINHVHTGGNSSGIVDGAALVLVGSEKAGKSQGL 284
Query: 218 KPLARIIAYFDAATEPIDFPIAPAFAIPTLLKNGGVAKQDVALWEINEAFSVVVLANIKK 277
P ARI+A + ++P+ P A +L G+ D+ L+E+NEAF+ VVL K
Sbjct: 285 TPRARIVATATSGSDPVIMLTGPTPATRKVLDRAGLTIDDIDLFELNEAFASVVLKFQKD 344
Query: 278 LDIDPSKVNVHGGAVSLGHPIGMSGARIVIHLCHALK 314
L+I K+NV+GGA+++GHP+G +GA I + L+
Sbjct: 345 LNIPDEKLNVNGGAIAMGHPLGATGAMITGTMVDELE 381
Score = 221 bits (565), Expect = 8e-65
Identities = 89/327 (27%), Positives = 147/327 (44%), Gaps = 40/327 (12%)
Query: 379 DVFIVSGSRTPMGSFRS-SLVSLSATKLGAVAIESAIQKAN-MDKSDVQEVYMGNVCQAG 436
+ FI RTP G ++ SL + L ++ ++ +D++ + ++ +G V G
Sbjct: 8 EAFIYEAIRTPRGKQKNGSLTEVKPLNLVVGLVDELRRRYPDLDETLISDMILGVVSPVG 67
Query: 437 LGQAPC--RQAVIFAGLPKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMVAGGMESM 494
Q R AV+ AGLP++T +N+ CASG++A+ A+Q + G D+++AGG+ESM
Sbjct: 68 -DQGGDIARTAVLAAGLPETTGGVQLNRFCASGLEAVNTAAQKVRSGWDDLVLAGGVESM 126
Query: 495 SNVPFYLNRGETKYGGMNLIDGIVYDGLSDVYNKIHMGNCAENTAKKFNISRDEQDEYAL 554
S VP + G + + + G A+ A SR++ D YAL
Sbjct: 127 SRVPMGSDGG---AWATDP-------ETNYRIGFVPQGIGADLIATLEGFSREDVDAYAL 176
Query: 555 SSYKKSADAYKNNVFSSQIVPVSIPQRKGKADIIVNEDEEYKK-INFEKFKSLATVFQ-- 611
S +K+A A+ F+ +VPV R +I++ DE + E L T F
Sbjct: 177 RSQQKAAAAWSGGYFAKSVVPV----RDQNGLVILDHDEHMRPDTTMEGLAKLKTAFDGV 232
Query: 612 ------------------KENGTVTAGNASTLNDGAAACVLMTEEAVRKFNAKPLARIIA 653
K N T GN+S + DGAA ++ +E+A + P ARI+A
Sbjct: 233 GEMGGFDDVALQKYHWVEKINHVHTGGNSSGIVDGAALVLVGSEKAGKSQGLTPRARIVA 292
Query: 654 YFDAATEPIDFPIAPAFAIPTLLKNGG 680
+ ++P+ P A +L G
Sbjct: 293 TATSGSDPVIMLTGPTPATRKVLDRAG 319
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 84.7 bits (209), Expect = 8e-17
Identities = 101/631 (16%), Positives = 184/631 (29%), Gaps = 207/631 (32%)
Query: 188 TVTAGNASTLNDGAAACVLMTEEAVRKFNA--KP------LARIIAYFDAATEPIDFPIA 239
T + AS L + + E F A +P + + + Y + EP +
Sbjct: 24 TASFFIASQLQEQFNKIL---PEPTEGFAADDEPTTPAELVGKFLGYVSSLVEP-----S 75
Query: 240 PAFAIPTLLKNGGVAKQDVALWEINEAFSVVVLANIKKLDIDPSKVNVHGGAVSLGHPIG 299
+L + L E + L ++H A L
Sbjct: 76 KVGQFDQVLN--------LCLTEFENCY----LEGN----------DIHALAAKLLQEND 113
Query: 300 MS------------GARIVIH----------LCHALKSGQK-------GQ-LSQFWYDE- 328
+ ARI+ L A+ G GQ + +++E
Sbjct: 114 TTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEEL 173
Query: 329 ----NTTQRLSEEVVCRAGK---EGSIALISCPTLYPKIREL-----APDAKASRNF--- 373
T L +++ + + E + ++ + + P +++
Sbjct: 174 RDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLS 233
Query: 374 --ASKPG---------DVFIVSGSRTPMGSFRSSLVSLSATKLG---AVAIESAIQKANM 419
S P V TP G RS L + G AVAI +
Sbjct: 234 IPISCPLIGVIQLAHYVVTAKLLGFTP-GELRSYLKGATGHSQGLVTAVAIAETDSWESF 292
Query: 420 DKSDVQEV----YMGNVCQAGLGQAPCRQAVIFAGLPKSTVCTTVNKVCASGMKAIMLAS 475
S + + ++G C +A LP S + ++ G+ + ML+
Sbjct: 293 FVSVRKAITVLFFIGVRCY---------EAYPNTSLPPSILEDSLENNE--GVPSPMLSI 341
Query: 476 QTLSLGHQDVMVAGGMESMSNVPFYLNRGETKYGGMNLIDGIVYDGLSDVYNKIHMGNCA 535
L+ V +N +L G+ ++ +
Sbjct: 342 SNLTQEQVQDYVNK-----TNS--HLPAGK----------------------QVEISLV- 371
Query: 536 ENTAKKFNISRDEQDEYALSSY--KKSADAYKNN----------VFSSQIVPVSIP---Q 580
N AK +S Q Y L+ K A + + FS++ +PV+ P
Sbjct: 372 -NGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSH 430
Query: 581 RKGKADIIVNEDEEYKKINFEKFKSLA-TVFQKENGTVTAGNASTLNDGAAACVLMTEEA 639
A ++N+D ++F K + V+ +G+ D
Sbjct: 431 LLVPASDLINKDLVKNNVSFNA-KDIQIPVYDTFDGS----------D------------ 467
Query: 640 VRKFNAKPLARIIAYFDA-ATEPIDFPIAPAFAIPTLLKNG-GQLSQFWYDENTTQRLSE 697
+R + RI+ D P+ + F +L G G S T R
Sbjct: 468 LRVLSGSISERIV---DCIIRLPVKWETTTQFKATHILDFGPGGASGL---GVLTHRN-- 519
Query: 698 EAVCRAGKEGS-IALISCPTLYPKIRELAPD 727
K+G+ + +I TL ++ PD
Sbjct: 520 -------KDGTGVRVIVAGTL-----DINPD 538
Score = 60.8 bits (147), Expect = 2e-09
Identities = 75/466 (16%), Positives = 148/466 (31%), Gaps = 140/466 (30%)
Query: 99 NKIHMGNCAENTAKKFNISRDEQDEYALSSYKKSADAYKNNVFSSQIV---PVSIPQ--- 152
N IH ++++ L K+ Y +++I+ P
Sbjct: 99 NDIHA----------LAAKLLQENDTTLVKTKELIKNY----ITARIMAKRPFDKKSNSA 144
Query: 153 -----RKGKADIIV------NEDEEYKKINFEKFKSLATVFQKENGTVTAGNASTLNDGA 201
+G A ++ N ++Y FE+ + L + G + +A TL++
Sbjct: 145 LFRAVGEGNAQLVAIFGGQGN-TDDY----FEELRDLYQTYHVLVGDLIKFSAETLSELI 199
Query: 202 AACVLMTEEAVRKFNAKPLARIIAYF-DAATEP-IDFPIAPAFAIPTLLKNGGVAKQDVA 259
T K + L I+ + + + P D+ ++ + P + GV Q
Sbjct: 200 R-----TTLDAEKVFTQGL-NILEWLENPSNTPDKDYLLSIPISCPLI----GVI-Q--- 245
Query: 260 LWEINEAFSVVVLANI----KKLDIDPSKVNVHGGAVSLGHPIGMSGARIVIHLCHALKS 315
LA+ K L P ++ + + GH G+ A +
Sbjct: 246 ------------LAHYVVTAKLLGFTPGELRSYLKGAT-GHSQGLVTAVAI--------- 283
Query: 316 GQKGQLSQFW--YDENTTQRLSEEVVCRAGKEGSIALISCPTLYPKIRELAPDAKASRNF 373
+ W + + + + V+ G A YP L P
Sbjct: 284 ----AETDSWESFFVSVRKAI--TVLFFIGVRCYEA-------YPNT-SLPPSILED--- 326
Query: 374 ASKPGDVFIVSGSRTPMGSFRSSLVSLSATKLGAVAIESAIQKANMDKSDVQEVYMGNVC 433
+ + + G +PM LS + L ++ + K N ++V + V
Sbjct: 327 SLENNE-----GVPSPM---------LSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVN 372
Query: 434 QAGLGQAPCRQAVIFAGLPKS--TVCTTVNKVCA-SGMK--AIMLASQTLSLGHQDVMVA 488
+ V+ +G P+S + T+ K A SG+ I + + L ++ + VA
Sbjct: 373 ------GA-KNLVV-SGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVA 424
Query: 489 GGMESMSNVPF---YLNRGETKYGGMNLIDGIVYDGLSD----VYN 527
PF L + + + ++ D VY+
Sbjct: 425 --------SPFHSHLLVPASDLINKDLVKNNVSFNA-KDIQIPVYD 461
Score = 53.9 bits (129), Expect = 2e-07
Identities = 55/329 (16%), Positives = 91/329 (27%), Gaps = 122/329 (37%)
Query: 510 GMNLIDGIVYDGLSDVYNKIHMGNCAENTAKKFNISRDEQDEYALSSYKKS-ADAYKNNV 568
GM G+ D+Y A+ + D + +Y S D NN
Sbjct: 1630 GM---------GM-DLYKT-------SKAAQDV---WNRADNHFKDTYGFSILDIVINN- 1668
Query: 569 FSSQIVPVSI----PQRKGKADIIVNEDEEYKKINFEKFK----SLATVFQKENGTVTA- 619
PV++ KGK I N Y + FE +F++ N T+
Sbjct: 1669 ------PVNLTIHFGGEKGKR-IREN----YSAMIFETIVDGKLKTEKIFKEINEHSTSY 1717
Query: 620 ---GNASTLNDGAAACVLMTEEAVRKFNAKP--LARIIAYFDAATEPIDFPIAPAFAIPT 674
L+ T+ +P A F+ P FA
Sbjct: 1718 TFRSEKGLLSA--------TQ------FTQPALTLMEKAAFEDLKSKGLIPADATFA--- 1760
Query: 675 LLKNG---GQLSQFWYDENTTQRLSEEA-VCRAGK---EGSIALISCPTLYPKIR-ELAP 726
G G E A A E + ++ R
Sbjct: 1761 ----GHSLG--------EYA-------ALASLADVMSIESLVEVV-------FYRGMTMQ 1794
Query: 727 DAKDVPR--ELSAHYDLVVLDP----PFLSDECLTK--AAVTAKLPLFVSLT-------- 770
A VPR ++Y ++ ++P S E L V + V +
Sbjct: 1795 VA--VPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQ 1852
Query: 771 --VSGEI--MQDLA--LRLLGVKKCKFIP 793
+G++ + + L + ++K I
Sbjct: 1853 YVAAGDLRALDTVTNVLNFIKLQKIDIIE 1881
Score = 43.9 bits (103), Expect = 2e-04
Identities = 55/285 (19%), Positives = 83/285 (29%), Gaps = 105/285 (36%)
Query: 82 GMNLIDGIVYDGLSDVYNKIHMGNCAENTAKKFNISRDEQDEYALSSYKKS-ADAYKNN- 139
GM G+ D+Y A+ + D + +Y S D NN
Sbjct: 1630 GM---------GM-DLYKT-------SKAAQDV---WNRADNHFKDTYGFSILDIVINNP 1669
Query: 140 -----VFSSQ-----------IVPVSIPQRKGKADIIVNE-DEEYKKINFEKFKSL--AT 180
F + ++ +I K K + I E +E F K L AT
Sbjct: 1670 VNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSAT 1729
Query: 181 VF-Q--------------KENGTVTAGNA----STLNDG---AAAC---VLMTEEAVR-- 213
F Q K G + A S L G A A V+ E V
Sbjct: 1730 QFTQPALTLMEKAAFEDLKSKGLIPADATFAGHS-L--GEYAALASLADVMSIESLVEVV 1786
Query: 214 ----KFNAKPLAR----IIAYFDAATEPIDFPIAPAF---AIPTLLKNGGVAKQDVALWE 262
+ R Y A P +A +F A+ +++ V K+ L E
Sbjct: 1787 FYRGMTMQVAVPRDELGRSNYGMIAINPGR--VAASFSQEALQYVVER--VGKRTGWLVE 1842
Query: 263 I---NEAFSVVVLA----------------NIKKLDIDPSKVNVH 288
I N V A ++K+DI + ++
Sbjct: 1843 IVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLS 1887
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 76.8 bits (188), Expect = 2e-14
Identities = 81/572 (14%), Positives = 157/572 (27%), Gaps = 198/572 (34%)
Query: 320 QLSQFWYDENTTQRLSEEVVCRAGKEGSIALISCPTLYPKIRELAPDAKASRNFASKPGD 379
Q + + N Q ++ V R Y K+R+ + + P
Sbjct: 115 QRDRLY---NDNQVFAKYNVSR------------LQPYLKLRQALLELR--------PAK 151
Query: 380 VFIVSGSRTPMGSF-RSSLVSLSATKLGAVAIESAIQKANMDKSDVQEVY---MGNVCQA 435
++ G + ++ + V + +Q K ++ + N
Sbjct: 152 NVLIDG----VLGSGKTWVAL-------DVCLSYKVQCKMDFK-----IFWLNLKNCNSP 195
Query: 436 GLGQAPCRQAVIFAGLPKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMVAGGMESMS 495
+ ++ Q L D + S
Sbjct: 196 ---------------------------------ETVLEMLQKLLY-QIDPNWTSRSDHSS 221
Query: 496 NVPFYLNRGETKYGGMNLIDGIVYDG----LSDVYNKIHMGNCAENTAKKFNI------- 544
N+ ++ + L+ Y+ L +V N FN+
Sbjct: 222 NIKLRIH--SIQAELRRLLKSKPYENCLLVLLNVQNA--------KAWNAFNLSCKILLT 271
Query: 545 SRDEQDEYALSSYKKSADAYKNNVFSSQIVPVSIPQRKGKADIIVNEDE--EY--KKINF 600
+R +Q LS+ + + DE K ++
Sbjct: 272 TRFKQVTDFLSAATTT-------------HISLDHHSMT-----LTPDEVKSLLLKYLD- 312
Query: 601 EKFKSLATVFQKENGTVTAGNASTLNDGAAACVLMTEEAVRKFNAKPLARIIAYFDAATE 660
+ + L N + A ++ DG A T + + N L II E
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIRDGLA-----TWDNWKHVNCDKLTTIIESSLNVLE 367
Query: 661 P-------IDFPIAPAFA-IPTLLKNGGQLSQFWYD--ENTTQRLSEE-----AVCRAGK 705
P + P A IPT+L LS W+D ++ + + V + K
Sbjct: 368 PAEYRKMFDRLSVFPPSAHIPTIL-----LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK 422
Query: 706 EGSIALISCPTLYPKIRELAPDAKDVPRELSAHYDLV-VLDPPFLSDEC----------- 753
E +I++ P++Y +++ + + R + HY++ D L
Sbjct: 423 ESTISI---PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH 479
Query: 754 -LTKAAVTAKLPLF------------------VSLTVSGEI---MQDLAL---------- 781
L ++ LF + SG I +Q L
Sbjct: 480 HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDP 539
Query: 782 ---RLLGVKKCKFIPRHKNNLAN-DFACFVNF 809
RL+ F+P+ + NL + +
Sbjct: 540 KYERLVNAIL-DFLPKIEENLICSKYTDLLRI 570
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 53.3 bits (128), Expect = 3e-07
Identities = 48/351 (13%), Positives = 95/351 (27%), Gaps = 95/351 (27%)
Query: 20 FAGLPKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMVAGGMESMSNVPFYLNRGETK 79
+G P T CA+ ++++ + +T+ G + + GG + G +
Sbjct: 1095 SSG-PIKTPVGA----CATSVESVDIGVETILSGKARICIVGGYDDFQ------EEGSFE 1143
Query: 80 YGGMNLIDGIVYDGLSDVYNKIHMGNCAENTAKKFNISRD-------------EQDEYAL 126
+G M S+ + G ++ +R+ Q + AL
Sbjct: 1144 FGNMK--------ATSNTLEEFEHGRTPAEMSRPATTTRNGFMEAQGAGIQIIMQADLAL 1195
Query: 127 ----------SSYKKSADAYKNNVFSSQIVPVSIPQ---------RKGKADI---IVNED 164
+ + D S+P R+ + + N +
Sbjct: 1196 KMGVPIYGIVAMAATATDKIG----------RSVPAPGKGILTTAREHHSSVKYASPNLN 1245
Query: 165 EEYKKINFEKFKSLATVFQKENGTVTAGNA---ST-LNDGAAACVLMTEEAVRKFNAKPL 220
+Y+K A + + A D + T E + A+
Sbjct: 1246 MKYRKRQLV--TREAQIKDWVENELEALKLEAEEIPSEDQNEFLLERTREIHNE--AESQ 1301
Query: 221 ARIIAYFDAATEPIDFPIAPAFAIPTLLKNGGVAKQDVA----------LWEINEAFSVV 270
R P L G+ D+ + NE+ +
Sbjct: 1302 LRAAQQQWGNDFYKRDPRIAPLR--GALATYGLTIDDLGVASFHGTSTKANDKNESAT-- 1357
Query: 271 VLANIKKLDIDPSKVNVHGGAVS-----LGHPIGMSGARIVIHLCHALKSG 316
I ++ + + GHP G +GA ++ L SG
Sbjct: 1358 ----INEMMKHLGRSEGNPVIGVFQKFLTGHPKGAAGAWMMNGALQILNSG 1404
Score = 45.3 bits (107), Expect = 9e-05
Identities = 9/48 (18%), Positives = 21/48 (43%), Gaps = 5/48 (10%)
Query: 448 FAGLPKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMVAGGMESMS 495
+G P T CA+ ++++ + +T+ G + + GG +
Sbjct: 1095 SSG-PIKTPVGA----CATSVESVDIGVETILSGKARICIVGGYDDFQ 1137
Score = 33.7 bits (77), Expect = 0.33
Identities = 22/154 (14%), Positives = 42/154 (27%), Gaps = 23/154 (14%)
Query: 581 RKGKADIIV---NEDEEYKKIN-FEKFKSLATVFQKENGTVTAGNAS----------TLN 626
GKA I + +D + + F K+ + ++ T S
Sbjct: 1121 LSGKARICIVGGYDDFQEEGSFEFGNMKATSNTLEEFEHGRTPAEMSRPATTTRNGFMEA 1180
Query: 627 DGAAACVLMTEEAVRKFNAKPLARIIAYF---DA----ATEPIDFPIAPAFAIPTLLKNG 679
GA ++M + K + D P + A + +K
Sbjct: 1181 QGAGIQIIMQADLALKMGVPIYGIVAMAATATDKIGRSVPAPGKGILTTAREHHSSVKYA 1240
Query: 680 GQLSQFWYDENTTQRLSEEAVCRAGKEGSIALIS 713
Y Q ++ EA + E + +
Sbjct: 1241 SPNLNMKY--RKRQLVTREAQIKDWVENELEALK 1272
Score = 29.1 bits (65), Expect = 8.9
Identities = 30/159 (18%), Positives = 52/159 (32%), Gaps = 32/159 (20%)
Query: 151 PQRKGK-ADIIVNEDEEYKKINFEKFKSLATVFQKENGTVT-----AGNASTLNDGAAAC 204
P++K ++IV ED E FE K A F+ ++G
Sbjct: 917 PEKKEMIQEVIVEEDLEP----FEASKETAEQFKHQHGDKVDIFEIPETGEYSVKLLKGA 972
Query: 205 VLMTEEAVRKFNAKPLARIIAYFDAATEPIDFPIAPAFAIPTLLKNGGVAKQD-VALWEI 263
L +A +F+ +I ++A T I I ++ D + L+ +
Sbjct: 973 TLYIPKA-LRFDRLVAGQIPTGWNAKTYGISDDII--------------SQVDPITLFVL 1017
Query: 264 ---NEAFSVVVLANIKKLDIDPSKVNVHGGAVSLGHPIG 299
EA + + I V+V G +G
Sbjct: 1018 VSVVEA---FIASGITDPYEMYKYVHVSEVGNCSGSGMG 1053
>4ewg_A Beta-ketoacyl synthase; ssgcid, structural genomics, seattle
structural genomics CEN infectious disease, transferase;
2.25A {Burkholderia phymatum}
Length = 412
Score = 41.3 bits (98), Expect = 0.001
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
Query: 19 IFAGL--PKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMVAGGMES 65
+F L + CASG +AI A + +++G Q +M+AGG E
Sbjct: 153 LFWDLKGRIVPTSSA----CASGSQAIGYAYENIAMGKQTLMLAGGAEE 197
Score = 41.3 bits (98), Expect = 0.001
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
Query: 447 IFAGL--PKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMVAGGMES 493
+F L + CASG +AI A + +++G Q +M+AGG E
Sbjct: 153 LFWDLKGRIVPTSSA----CASGSQAIGYAYENIAMGKQTLMLAGGAEE 197
>1ox0_A Beta ketoacyl-acyl carrier protein synthase; transferase; 1.30A
{Streptococcus pneumoniae} SCOP: c.95.1.1 c.95.1.1 PDB:
1oxh_A 2alm_A 2rjt_A
Length = 430
Score = 41.0 bits (97), Expect = 0.001
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 29 CTTVNKVCASGMKAIMLASQTLSLGHQDVMVAGGMES 65
C ++N C+S AI A +++ G QDVM+ GG E+
Sbjct: 176 CKSINTACSSSNDAIGDAFRSIKFGFQDVMLVGGTEA 212
Score = 41.0 bits (97), Expect = 0.001
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 457 CTTVNKVCASGMKAIMLASQTLSLGHQDVMVAGGMES 493
C ++N C+S AI A +++ G QDVM+ GG E+
Sbjct: 176 CKSINTACSSSNDAIGDAFRSIKFGFQDVMLVGGTEA 212
>2gqd_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; duplicated babababb
fold, transferase; 2.30A {Staphylococcus aureus}
Length = 437
Score = 40.2 bits (95), Expect = 0.002
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 29 CTTVNKVCASGMKAIMLASQTLSLGHQDVMVAGGMES 65
CA+G +I A + + G D M+ GG E+
Sbjct: 181 NGATVTACATGTNSIGEAFKIVQRGDADAMITGGTEA 217
Score = 40.2 bits (95), Expect = 0.002
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 457 CTTVNKVCASGMKAIMLASQTLSLGHQDVMVAGGMES 493
CA+G +I A + + G D M+ GG E+
Sbjct: 181 NGATVTACATGTNSIGEAFKIVQRGDADAMITGGTEA 217
>1j3n_A 3-oxoacyl-(acyl-carrier protein) synthase II; condensing enzymes,
fatty acid elongation, acyl-carrier protein (ACP); HET:
CIT; 2.00A {Thermus thermophilus} SCOP: c.95.1.1
c.95.1.1
Length = 408
Score = 40.2 bits (95), Expect = 0.002
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 29 CTTVNKVCASGMKAIMLASQTLSLGHQDVMVAGGMES 65
+TV CA+G A+ A + + LG D+++AGG E+
Sbjct: 154 SSTVVTACATGADALGSALRMIQLGEADLVLAGGTEA 190
Score = 40.2 bits (95), Expect = 0.002
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 457 CTTVNKVCASGMKAIMLASQTLSLGHQDVMVAGGMES 493
+TV CA+G A+ A + + LG D+++AGG E+
Sbjct: 154 SSTVVTACATGADALGSALRMIQLGEADLVLAGGTEA 190
>3o04_A LMO2201 protein, beta-keto-acyl carrier protein synthase II; csgid,
structural genomics; 1.85A {Listeria monocytogenes}
Length = 413
Score = 40.2 bits (95), Expect = 0.003
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 29 CTTVNKVCASGMKAIMLASQTLSLGHQDVMVAGGMES 65
+T CA+ +I A + + G D M+ GG E+
Sbjct: 157 NSTTVTACATATNSIGDAFKVIERGDADAMITGGAEA 193
Score = 40.2 bits (95), Expect = 0.003
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 457 CTTVNKVCASGMKAIMLASQTLSLGHQDVMVAGGMES 493
+T CA+ +I A + + G D M+ GG E+
Sbjct: 157 NSTTVTACATATNSIGDAFKVIERGDADAMITGGAEA 193
>1e5m_A KAS II, beta ketoacyl acyl carrier protein synthase II; condensing
enzyme, biosynthetic role, carbon-carbon bond formation;
1.54A {Synechocystis SP} SCOP: c.95.1.1 c.95.1.1
Length = 416
Score = 39.8 bits (94), Expect = 0.003
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 29 CTTVNKVCASGMKAIMLASQTLSLGHQDVMVAGGMES 65
CA+G AI A + + G+ M+ GG E+
Sbjct: 160 NNCTVTACAAGSNAIGDAFRLVQNGYAKAMICGGTEA 196
Score = 39.8 bits (94), Expect = 0.003
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 457 CTTVNKVCASGMKAIMLASQTLSLGHQDVMVAGGMES 493
CA+G AI A + + G+ M+ GG E+
Sbjct: 160 NNCTVTACAAGSNAIGDAFRLVQNGYAKAMICGGTEA 196
>1tqy_A Beta-ketoacyl synthase/acyl transferase;
alpha-beta-alpha-beta-alpha, heterodimer, transferase;
2.00A {Streptomyces coelicolor} SCOP: c.95.1.1 c.95.1.1
Length = 424
Score = 39.8 bits (94), Expect = 0.003
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 6/49 (12%)
Query: 19 IFAGL--PKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMVAGGMES 65
G P + V T C SG+ ++ A + + G DVM AG ++
Sbjct: 154 WAVGAEGPVTMVSTG----CTSGLDSVGNAVRAIEEGSADVMFAGAADT 198
Score = 39.8 bits (94), Expect = 0.003
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 6/49 (12%)
Query: 447 IFAGL--PKSTVCTTVNKVCASGMKAIMLASQTLSLGHQDVMVAGGMES 493
G P + V T C SG+ ++ A + + G DVM AG ++
Sbjct: 154 WAVGAEGPVTMVSTG----CTSGLDSVGNAVRAIEEGSADVMFAGAADT 198
>2wge_A 3-oxoacyl-[acyl-carrier-protein] synthase 1; beta ketoacyl synthase
I thiolactomycin, cytoplasm, transferase,
acyltransferase; HET: TLM; 1.80A {Mycobacterium
tuberculosis} PDB: 2wgd_A* 2wgg_A* 2wgf_A*
Length = 416
Score = 39.8 bits (94), Expect = 0.003
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 36 CASGMKAIMLASQTLSLGHQDVMVAGGMES 65
C+SG +AI A + + +G DV V GG+E
Sbjct: 171 CSSGSEAIAHAWRQIVMGDADVAVCGGVEG 200
Score = 39.8 bits (94), Expect = 0.003
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 464 CASGMKAIMLASQTLSLGHQDVMVAGGMES 493
C+SG +AI A + + +G DV V GG+E
Sbjct: 171 CSSGSEAIAHAWRQIVMGDADVAVCGGVEG 200
>2vba_A 3-oxoacyl-[acyl-carrier-protein] synthase 1; cytoplasm, antibiotic,
transferase, amino-thiazole, acyltransferase, lipid
synthesis; HET: P4T; 1.36A {Escherichia coli} SCOP:
c.95.1.1 c.95.1.1 PDB: 1fj4_A* 1g5x_A 2aq7_A* 1fj8_A*
2aqb_A 2bui_A 2buh_A 2vb7_A* 2vb8_A 2vb9_A* 1h4f_A
1dd8_A 2cdh_A 2bz4_A 2byz_A 2bz3_A* 2byy_A* 1f91_A*
2cf2_A 2byw_A ...
Length = 406
Score = 39.8 bits (94), Expect = 0.003
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 36 CASGMKAIMLASQTLSLGHQDVMVAGGMES 65
CA+ I A + + LG QD++ AGG E
Sbjct: 163 CATSAHCIGNAVEQIQLGKQDIVFAGGGEE 192
Score = 39.8 bits (94), Expect = 0.003
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 464 CASGMKAIMLASQTLSLGHQDVMVAGGMES 493
CA+ I A + + LG QD++ AGG E
Sbjct: 163 CATSAHCIGNAVEQIQLGKQDIVFAGGGEE 192
>2iwz_A 3-oxoacyl-[acyl-carrier-protein] synthase; mitochondria,
mitochondrion, lipid synthesis, fatty acid SYN fatty
acid biosynthesis; 1.65A {Homo sapiens} PDB: 2iwy_A
2c9h_A
Length = 438
Score = 39.8 bits (94), Expect = 0.003
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 36 CASGMKAIMLASQTLSLGHQDVMVAGGMES 65
C +G A+ + + ++ G DVMVAGG +S
Sbjct: 188 CTTGAHAVGDSFRFIAHGDADVMVAGGTDS 217
Score = 39.8 bits (94), Expect = 0.003
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 464 CASGMKAIMLASQTLSLGHQDVMVAGGMES 493
C +G A+ + + ++ G DVMVAGG +S
Sbjct: 188 CTTGAHAVGDSFRFIAHGDADVMVAGGTDS 217
>3kzu_A 3-oxoacyl-(acyl-carrier-protein) synthase II; seattle structural
genomics center for infectious disease, ssgcid,
acyltransferase; 1.75A {Brucella melitensis} PDB: 3e60_A
Length = 428
Score = 39.8 bits (94), Expect = 0.003
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 36 CASGMKAIMLASQTLSLGHQDVMVAGGMES 65
CA+G AI A++ ++ G DVMVAGG ES
Sbjct: 178 CATGTHAIGDAARLIAFGDADVMVAGGTES 207
Score = 39.8 bits (94), Expect = 0.003
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 464 CASGMKAIMLASQTLSLGHQDVMVAGGMES 493
CA+G AI A++ ++ G DVMVAGG ES
Sbjct: 178 CATGTHAIGDAARLIAFGDADVMVAGGTES 207
>2gp6_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; thiolase fold,
structural genomics, PSI, protein structure initiative;
2.40A {Mycobacterium tuberculosis}
Length = 434
Score = 39.4 bits (93), Expect = 0.004
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 36 CASGMKAIMLASQTLSLGHQDVMVAGGMES 65
CASG +AI A Q + LG D + GG+E+
Sbjct: 187 CASGAEAIARAWQQIVLGEADAAICGGVET 216
Score = 39.4 bits (93), Expect = 0.004
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 464 CASGMKAIMLASQTLSLGHQDVMVAGGMES 493
CASG +AI A Q + LG D + GG+E+
Sbjct: 187 CASGAEAIARAWQQIVLGEADAAICGGVET 216
>3ho9_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; FABF, platensimycin,
platencin A1, KAS2, acyltransferase, fatty acid
biosynthesis; HET: N3A; 1.90A {Escherichia coli} PDB:
3hnz_A* 3ho2_A* 3i8p_A* 3g11_A* 2gfx_A* 3g0y_A* 2gfv_A*
2gfw_A 2gfy_A* 1kas_A 1b3n_A
Length = 427
Score = 39.5 bits (93), Expect = 0.004
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 29 CTTVNKVCASGMKAIMLASQTLSLGHQDVMVAGGMES 65
++ SG+ I A++ ++ G DVMVAGG E
Sbjct: 171 SISIATAATSGVHNIGHAARIIAYGDADVMVAGGAEK 207
Score = 39.5 bits (93), Expect = 0.004
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 457 CTTVNKVCASGMKAIMLASQTLSLGHQDVMVAGGMES 493
++ SG+ I A++ ++ G DVMVAGG E
Sbjct: 171 SISIATAATSGVHNIGHAARIIAYGDADVMVAGGAEK 207
>2ix4_A 3-oxoacyl-[acyl-carrier-protein] synthase; beta-ketoacyl-(acyl
carrier protein) synthase, lipid metabol condensing
enzyme; 1.95A {Arabidopsis thaliana} SCOP: c.95.1.1
c.95.1.1 PDB: 1w0i_A
Length = 431
Score = 39.5 bits (93), Expect = 0.004
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 36 CASGMKAIMLASQTLSLGHQDVMVAGGMES 65
CA+G +I A++ + G DVMVAGG ES
Sbjct: 179 CATGAHSIGDATRMIQFGDADVMVAGGTES 208
Score = 39.5 bits (93), Expect = 0.004
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 464 CASGMKAIMLASQTLSLGHQDVMVAGGMES 493
CA+G +I A++ + G DVMVAGG ES
Sbjct: 179 CATGAHSIGDATRMIQFGDADVMVAGGTES 208
>4ddo_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; ssgcid, struct
genomics, seattle structural genomics center for
infectious transferase; 1.90A {Burkholderia
vietnamiensis} PDB: 4f32_A*
Length = 451
Score = 39.5 bits (93), Expect = 0.005
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 36 CASGMKAIMLASQTLSLGHQDVMVAGGMES 65
CA+ ++AI A + + G DV++AGG E+
Sbjct: 193 CAASVQAIGDAMRMIRTGEADVVLAGGAEA 222
Score = 39.5 bits (93), Expect = 0.005
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 464 CASGMKAIMLASQTLSLGHQDVMVAGGMES 493
CA+ ++AI A + + G DV++AGG E+
Sbjct: 193 CAASVQAIGDAMRMIRTGEADVVLAGGAEA 222
>3mqd_A Beta-ketoacyl synthase; ssgcid, ALS collaborative crystallography,
beta-ketoacyl SYN brucella melitensis, fragments of
LIFE; HET: 3MQ; 1.25A {Brucella melitensis biovar
abortus} PDB: 3lrf_A* 3u0e_A* 3u0f_A*
Length = 428
Score = 39.0 bits (92), Expect = 0.005
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 36 CASGMKAIMLASQTLSLGHQDVMVAGGMES 65
CA+ I A + + G QD M AGG E
Sbjct: 182 CATSNHCIGNAYEMIQYGKQDRMFAGGCED 211
Score = 39.0 bits (92), Expect = 0.005
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 464 CASGMKAIMLASQTLSLGHQDVMVAGGMES 493
CA+ I A + + G QD M AGG E
Sbjct: 182 CATSNHCIGNAYEMIQYGKQDRMFAGGCED 211
>3lma_A Stage V sporulation protein AD (spovad); NESG, structural genomics,
PSI-2, protein structure initiative; 1.99A {Bacillus
licheniformis} PDB: 3lm6_A
Length = 347
Score = 37.7 bits (88), Expect = 0.012
Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 9/88 (10%)
Query: 404 KLGAVAIESAIQKANMDKSDVQEVYMGNVCQAGLGQ-APCRQAVIFAGLPKSTVCTTVNK 462
KL A++SA+ K N+ K D+ G++ L Q +P +
Sbjct: 57 KLMEDAVQSALSKQNLKKEDIDIFLAGDL----LNQNVTANYVARHLKIP----FLCLFG 108
Query: 463 VCASGMKAIMLASQTLSLGHQDVMVAGG 490
C++ M++I ++S + G +A
Sbjct: 109 ACSTSMESIAISSALIDGGFAKRALAAT 136
>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis,
malonyl/palmitoyl transferase, phosphopantetheine,
transferase; HET: GVL FMN; 3.10A {Saccharomyces
cerevisiae} PDB: 2vkz_A* 3hmj_A*
Length = 1887
Score = 36.9 bits (85), Expect = 0.032
Identities = 6/32 (18%), Positives = 17/32 (53%)
Query: 36 CASGMKAIMLASQTLSLGHQDVMVAGGMESMS 67
CA+ ++++ + +T+ G + + GG +
Sbjct: 1305 CATSVESVDIGVETILSGKARICIVGGYDDFQ 1336
Score = 36.9 bits (85), Expect = 0.032
Identities = 6/32 (18%), Positives = 17/32 (53%)
Query: 464 CASGMKAIMLASQTLSLGHQDVMVAGGMESMS 495
CA+ ++++ + +T+ G + + GG +
Sbjct: 1305 CATSVESVDIGVETILSGKARICIVGGYDDFQ 1336
>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl
reductase, ketoacyl synthase, ketoacyl reductase; 3.1A
{Thermomyces lanuginosus} PDB: 2uvb_A*
Length = 1878
Score = 36.8 bits (85), Expect = 0.036
Identities = 7/32 (21%), Positives = 16/32 (50%)
Query: 36 CASGMKAIMLASQTLSLGHQDVMVAGGMESMS 67
CA+ ++++ + T+ G V + GG +
Sbjct: 1280 CATAVESLDVGYDTIMQGKARVCLVGGFDDFQ 1311
Score = 36.8 bits (85), Expect = 0.036
Identities = 7/32 (21%), Positives = 16/32 (50%)
Query: 464 CASGMKAIMLASQTLSLGHQDVMVAGGMESMS 495
CA+ ++++ + T+ G V + GG +
Sbjct: 1280 CATAVESLDVGYDTIMQGKARVCLVGGFDDFQ 1311
>3s3l_A CERJ; acyltransferase, FABH homologue, KS III homologue, dimethyl
transfer, transferase; 2.00A {Streptomyces tendae} PDB:
3t5y_A* 3t6s_A* 3t8e_A 3t5y_B*
Length = 357
Score = 35.7 bits (83), Expect = 0.048
Identities = 14/91 (15%), Positives = 28/91 (30%), Gaps = 26/91 (28%)
Query: 243 AIPTLLKNGGVAKQDVALWEINEAFSVVVL--ANI-------KKLDIDPSKVNVHGGAVS 293
A L++ G A +D+A V+ + L + + + +
Sbjct: 243 AKTQALEDAGTAIEDIAH---------AVIPVSRRGTGHELHDLLGLPDERT-----SWA 288
Query: 294 LGHPIG-MSGARIVIHLCHALKSG--QKGQL 321
G G + L H +++ Q G
Sbjct: 289 YGRTTGHVGAGDQYAGLAHLVENALVQPGDR 319
>1tqy_B Actinorhodin polyketide putative beta-ketoacyl SY;
alpha-beta-alpha-beta-alpha, heterodimer, transferase;
2.00A {Streptomyces coelicolor} SCOP: c.95.1.1 c.95.1.1
Length = 415
Score = 35.2 bits (82), Expect = 0.093
Identities = 10/30 (33%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 36 CASGMKAIMLASQTLSLGHQDVMVAGGMES 65
A G+ A+ A +T+ G ++V+GG++S
Sbjct: 169 QAGGLDALGHARRTIRRG-TPLVVSGGVDS 197
Score = 35.2 bits (82), Expect = 0.093
Identities = 10/30 (33%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 464 CASGMKAIMLASQTLSLGHQDVMVAGGMES 493
A G+ A+ A +T+ G ++V+GG++S
Sbjct: 169 QAGGLDALGHARRTIRRG-TPLVVSGGVDS 197
>2d3m_A Pentaketide chromone synthase; chalcone synthase, polyketide
synthase, transferase; HET: COA; 1.60A {Aloe
arborescens} PDB: 2d51_A 2d52_A*
Length = 406
Score = 34.6 bits (79), Expect = 0.12
Identities = 16/103 (15%), Positives = 31/103 (30%), Gaps = 2/103 (1%)
Query: 394 RSSLVSLSATKLGAVAIESAIQKANMDKSDVQEVYMGNVCQAGLGQAPCRQAVIFAGLPK 453
R + LG A AI++ KS++ + C + A + A + GL
Sbjct: 107 RQDICVPGVPALGTEAAVKAIEEWGRPKSEITHLVFCTSCGVDMPSADFQCAKLL-GLHA 165
Query: 454 STVCTTVNKV-CASGMKAIMLASQTLSLGHQDVMVAGGMESMS 495
+ + +G + A ++ E
Sbjct: 166 NVNKYCIYMQGAYAGGTVMRYAKDLAENNRGARVLVVCAELTI 208
>1xes_A Dihydropinosylvin synthase; native structure, transferase; HET:
3IO; 1.70A {Pinus sylvestris} PDB: 1xet_A* 1u0u_A
Length = 413
Score = 33.8 bits (77), Expect = 0.24
Identities = 20/103 (19%), Positives = 38/103 (36%), Gaps = 2/103 (1%)
Query: 394 RSSLVSLSATKLGAVAIESAIQKANMDKSDVQEVYMGNVCQAGLGQAPCRQAVIFAGLPK 453
R +++++ +L A E AIQ+ KS + + + L A A + GL
Sbjct: 117 RQAMLAMEVPRLAKEAAEKAIQEWGQSKSGITHLIFCSTTTPDLPGADFEVAKLL-GLHP 175
Query: 454 STVCTTVN-KVCASGMKAIMLASQTLSLGHQDVMVAGGMESMS 495
S V C +G + +A ++ E+ +
Sbjct: 176 SVKRVGVFQHGCFAGGTVLRMAKDLAENNRGARVLVICSETTA 218
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase,
S-adenosyl-methionine, 23S ribosoma transferase; HET:
SAM; 1.70A {Thermus thermophilus}
Length = 393
Score = 33.4 bits (77), Expect = 0.26
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 727 DAKDVPRELSAHYDLVVLDPP 747
+A R L + V+LDPP
Sbjct: 269 EALPTLRGLEGPFHHVLLDPP 289
>3v7i_A Putative polyketide synthase; type III polyketide synthase,
acyltransferase, transferase,; 2.90A {Streptomyces
coelicolor}
Length = 413
Score = 32.2 bits (73), Expect = 0.67
Identities = 16/86 (18%), Positives = 32/86 (37%), Gaps = 6/86 (6%)
Query: 394 RSSLVSLSATKLGAVAIESAIQKANMDKSDVQEVYMGNVCQAGLGQAPCRQAVIFA--GL 451
R++ + G A A+Q A +D +DV + + P + L
Sbjct: 129 RTAPAWEAVQAYGERAARGALQIAGLDVADVDCLI---TSNSTTPALPGLDVALANRLPL 185
Query: 452 PKSTVCTTVNKV-CASGMKAIMLASQ 476
T+ + C +G +++ LA+
Sbjct: 186 RGDTMLLPATQWACVAGTRSLALAAD 211
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.81
Identities = 11/38 (28%), Positives = 15/38 (39%), Gaps = 16/38 (42%)
Query: 209 EEAVRKFNA--KPLARIIAYFDAATEPIDFPIAPAFAI 244
++A++K A K Y D APA AI
Sbjct: 19 KQALKKLQASLKL------Y-----AD-D--SAPALAI 42
Score = 31.1 bits (69), Expect = 0.81
Identities = 11/38 (28%), Positives = 15/38 (39%), Gaps = 16/38 (42%)
Query: 637 EEAVRKFNA--KPLARIIAYFDAATEPIDFPIAPAFAI 672
++A++K A K Y D APA AI
Sbjct: 19 KQALKKLQASLKL------Y-----AD-D--SAPALAI 42
>1i88_A CHS2, chalcone synthase 2; polyketide synthase, transferase; 1.45A
{Medicago sativa} SCOP: c.95.1.2 c.95.1.2 PDB: 1i89_A
1i86_A 1i8b_A 1bi5_A 1cml_A* 1d6f_A* 1chw_A* 1cgz_A*
1cgk_A* 1bq6_A* 1jwx_A 1d6i_A 1d6h_A* 1u0v_A 1u0w_A*
1z1e_A* 1z1f_A*
Length = 389
Score = 31.8 bits (72), Expect = 0.84
Identities = 17/93 (18%), Positives = 32/93 (34%), Gaps = 6/93 (6%)
Query: 387 RTPMGSFRSSLVSLSATKLGAVAIESAIQKANMDKSDVQEVYMGNVCQAGLGQAPCRQAV 446
P R +V + +LG A AI++ KS + + + +G+ P
Sbjct: 87 MAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIV--CTTSGVD-MPGADYQ 143
Query: 447 IFA--GLPKSTVCTTVNKV-CASGMKAIMLASQ 476
+ GL + + +G + LA
Sbjct: 144 LTKLLGLRPYVKRYMMYQQGAFAGGTVLRLAKD 176
>2jtq_A Phage shock protein E; solution structure rhodanese, stress
response, transferase; NMR {Escherichia coli} PDB:
2jtr_A 2jts_A
Length = 85
Score = 29.1 bits (66), Expect = 1.2
Identities = 9/34 (26%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 35 VCASGMKAIMLASQTL-SLGHQDVMVAGGMESMS 67
C +G ++ A + L +G+ V AGG++ ++
Sbjct: 47 YCNAGRQS-GQAKEILSEMGYTHVENAGGLKDIA 79
Score = 29.1 bits (66), Expect = 1.2
Identities = 9/34 (26%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 463 VCASGMKAIMLASQTL-SLGHQDVMVAGGMESMS 495
C +G ++ A + L +G+ V AGG++ ++
Sbjct: 47 YCNAGRQS-GQAKEILSEMGYTHVENAGGLKDIA 79
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase,
PSI, protei structure initiative; HET: MSE; 2.05A
{Escherichia coli} SCOP: c.66.1.46
Length = 202
Score = 30.6 bits (70), Expect = 1.3
Identities = 8/35 (22%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
Query: 727 DAKDVPRELSAHYDLVVLDPPF---LSDECLTKAA 758
+A + +++V +DPPF L +E +
Sbjct: 111 NAMSFLAQKGTPHNIVFVDPPFRRGLLEETINLLE 145
>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for
structural genomics of infectious diseases, csgid, HYDR;
2.10A {Staphylococcus aureus}
Length = 466
Score = 31.1 bits (70), Expect = 1.4
Identities = 6/35 (17%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 35 VCASGMKAIMLASQTLSLGHQDVM-VAGGMESMSN 68
C SG+++ + G+ +++ V G + +
Sbjct: 431 HCQSGIRSSIAIGILEHKGYHNIINVNEGYKDIQL 465
Score = 31.1 bits (70), Expect = 1.4
Identities = 6/35 (17%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 463 VCASGMKAIMLASQTLSLGHQDVM-VAGGMESMSN 496
C SG+++ + G+ +++ V G + +
Sbjct: 431 HCQSGIRSSIAIGILEHKGYHNIINVNEGYKDIQL 465
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 30.9 bits (69), Expect = 1.4
Identities = 13/67 (19%), Positives = 26/67 (38%), Gaps = 14/67 (20%)
Query: 216 NAKPLARIIAYFD-AATEPIDFP---IA--P----AFAIP----TLLKNGGVAKQDVALW 261
PL RI++ + + T+ IA P A +P +N + + +
Sbjct: 140 KVPPLIRIVSGLELSDTKQKGKKFLVIAYEPFENIAIELPPNEILFSENNDMDNNNDGVD 199
Query: 262 EINEAFS 268
E+N+ +
Sbjct: 200 ELNKKCT 206
Score = 29.7 bits (66), Expect = 2.9
Identities = 12/75 (16%), Positives = 23/75 (30%), Gaps = 25/75 (33%)
Query: 644 NAKPLARIIAYFD-AATEPIDFP---IA--P----AFAIPT--LLKNGGQL--------- 682
PL RI++ + + T+ IA P A +P +L +
Sbjct: 140 KVPPLIRIVSGLELSDTKQKGKKFLVIAYEPFENIAIELPPNEILFSENNDMDNNNDGVD 199
Query: 683 ---SQFWY-DENTTQ 693
+ + D +
Sbjct: 200 ELNKKCTFWDAISKL 214
>3ov2_A Curcumin synthase; type III polyketide synthase, transferase; 2.32A
{Curcuma longa} PDB: 3ov3_A
Length = 393
Score = 31.0 bits (70), Expect = 1.5
Identities = 18/91 (19%), Positives = 34/91 (37%), Gaps = 2/91 (2%)
Query: 387 RTPMGSFRSSLVSLSATKLGAVAIESAIQKANMDKSDVQEVYMGNVCQAGLGQAPCRQAV 446
+ R +V +L A E AI++ KS++ + ++ + A R A
Sbjct: 87 KEASFDDRQDIVVEEIPRLAKEAAEKAIKEWGRPKSEITHLVFCSISGIDMPGADYRLAT 146
Query: 447 IFAGLPKSTVCTTVNKV-CASGMKAIMLASQ 476
+ GLP + + C G + +A
Sbjct: 147 LL-GLPLTVNRLMIYSQACHMGAAMLRIAKD 176
>2esr_A Methyltransferase; structural genomics, hypothetical protein,
streptococcus PYO PSI, protein structure initiative;
HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Length = 177
Score = 30.2 bits (69), Expect = 1.7
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
Query: 727 DAKDVPRELSAHYDLVVLDPPF---LSDECLTKAA 758
+A+ L+ +DLV LDPP+ + A
Sbjct: 89 EAERAIDCLTGRFDLVFLDPPYAKETIVATIEALA 123
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent
methyltransferase fold; 2.00A {Escherichia coli K12}
Length = 396
Score = 30.4 bits (69), Expect = 2.3
Identities = 7/24 (29%), Positives = 12/24 (50%), Gaps = 3/24 (12%)
Query: 727 DAKDVPRELSAH---YDLVVLDPP 747
D + R +D++V+DPP
Sbjct: 279 DVFKLLRTYRDRGEKFDVIVMDPP 302
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine
kinase domain, signaling protein, transferase, inner
membrane, membrane; 2.50A {Escherichia coli}
Length = 299
Score = 30.4 bits (69), Expect = 2.4
Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 16/67 (23%)
Query: 733 RELSAHYDLVVLD-PPFLSDECLTKAAVTAKL---PLFV---------SLTVSGEIMQDL 779
+ HYDLV++D PP L+ ++ AAV + L V +++S + ++
Sbjct: 208 EWANDHYDLVIVDTPPMLA---VSDAAVVGRSVGTSLLVARFGLNTAKEVSLSMQRLEQA 264
Query: 780 ALRLLGV 786
+ + G
Sbjct: 265 GVNIKGA 271
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics,
structural genomics consort ATP-binding, hydrolase,
nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Length = 262
Score = 30.0 bits (68), Expect = 2.4
Identities = 17/73 (23%), Positives = 25/73 (34%), Gaps = 24/73 (32%)
Query: 669 AFAIPTLLKNGGQLSQFWYDENTTQRLSEEAVCRAGKEGSIALISCPTLYPKIRELAPDA 728
AF IP + + + + + G+ LI PT RELA
Sbjct: 107 AFLIPAV-----------------ELIVKLR--FMPRNGTGVLILSPT-----RELAMQT 142
Query: 729 KDVPRELSAHYDL 741
V +EL H+
Sbjct: 143 FGVLKELMTHHVH 155
>3euo_A Type III pentaketide synthase; alpha helix, acyltransferase,
transferase; 1.75A {Neurospora crassa} PDB: 3eut_A*
3euq_A*
Length = 379
Score = 30.4 bits (68), Expect = 2.7
Identities = 19/149 (12%), Positives = 40/149 (26%), Gaps = 2/149 (1%)
Query: 394 RSSLVSLSATKLGAVAIESAIQKANMDKSDVQEVYMGNVCQAGLGQAPCRQAVIFAGLPK 453
+ L A A+ +A + + + + + A GL
Sbjct: 73 LHEVFMSDGVPLAVEASRKAMAEARLVPAQITHMVSTTCTDSANPGYDHYVAKEL-GLSD 131
Query: 454 STVCTTVNKV-CASGMKAIMLASQTLSLGHQDVMVAGGMESMSNVPFYLNRGETKYGGMN 512
++ + + G+ A+ A+ A + V + R E +
Sbjct: 132 RLEKVLLHGIGASGGLAALRTAANLCLGHTARGKPARILVLALEVSTTMVRSELESIDAL 191
Query: 513 LIDGIVYDGLSDVYNKIHMGNCAENTAKK 541
I SD + + + N K
Sbjct: 192 QETRIGIALFSDCASAVILSNGIGEAPGK 220
>3oit_A OS07G0271500 protein; type III polyketide synthases, transferase;
2.00A {Oryza sativa} PDB: 3ale_A
Length = 387
Score = 30.2 bits (68), Expect = 2.8
Identities = 19/91 (20%), Positives = 35/91 (38%), Gaps = 6/91 (6%)
Query: 389 PMGSFRSSLVSLSATKLGAVAIESAIQKANMDKSDVQEVYMGNVCQAGLGQAPCRQAVIF 448
P R + + + +L A A + AI + +D+ + + +G P +
Sbjct: 83 PSLDARLDIAADAVPELAAEAAKKAIAEWGRPAADITHLVV--TTNSGAH-VPGVDFRLV 139
Query: 449 A--GLPKSTVCTTVNKV-CASGMKAIMLASQ 476
GL S T ++ C +G A+ LA
Sbjct: 140 PLLGLRPSVRRTMLHLNGCFAGCAALRLAKD 170
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding
domain, walker A motif, B protein kinase,
oligomerization; HET: ADP; 3.20A {Escherichia coli}
Length = 286
Score = 30.0 bits (68), Expect = 3.0
Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 16/67 (23%)
Query: 733 RELSAHYDLVVLD-PPFLSDECLTKAAVTAKL---PLFV---------SLTVSGEIMQDL 779
S +YDLV++D PP L+ +T AA+ + L V + S +
Sbjct: 196 NWASKNYDLVLIDTPPILA---VTDAAIVGRHVGTTLMVARYAVNTLKEVETSLSRFEQN 252
Query: 780 ALRLLGV 786
+ + GV
Sbjct: 253 GIPVKGV 259
>3awk_A Chalcone synthase-like polyketide synthase; type III polyketide
synthase, transferase; 2.00A {Huperzia serrata} PDB:
3awj_A
Length = 402
Score = 30.3 bits (68), Expect = 3.0
Identities = 17/105 (16%), Positives = 34/105 (32%), Gaps = 6/105 (5%)
Query: 394 RSSLVSLSATKLGAVAIESAIQKANMDKSDVQEVYMGNVCQAGLGQAPCRQAVIFA--GL 451
R + L KL A SAI++ KS + + +G+ P + GL
Sbjct: 107 RQDIAVLEVPKLAKEAAISAIKQWGQPKSKITHLVF--ATTSGV-DMPGADFQLAKLLGL 163
Query: 452 PKSTVCTTVN-KVCASGMKAIMLASQTLSLGHQDVMVAGGMESMS 495
+ + + +G + +A ++ E +
Sbjct: 164 RPTVKRVMLYQQGAYAGATVLRVAKDLAENNKGARVLVACSEVTA 208
>2b78_A Hypothetical protein SMU.776; structure genomics,
methyltransferase, caries, structural genomics, unknown
function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9
c.66.1.51 PDB: 3ldf_A*
Length = 385
Score = 29.9 bits (68), Expect = 3.7
Identities = 8/24 (33%), Positives = 13/24 (54%), Gaps = 3/24 (12%)
Query: 727 DAKDVPRELSAH---YDLVVLDPP 747
D D + H YD++++DPP
Sbjct: 271 DVFDYFKYARRHHLTYDIIIIDPP 294
>1yx3_A Hypothetical protein DSRC; structural genomics, dissimilatory
sulfite reductase, gamma subunit, DSVC, PSI, protein
structure initiative; NMR {Allochromatium vinosum}
Length = 132
Score = 28.6 bits (64), Expect = 4.1
Identities = 11/17 (64%), Positives = 12/17 (70%)
Query: 13 PCRQAVIFAGLPKSTVC 29
P +QA FAGLPK T C
Sbjct: 115 PAKQACRFAGLPKPTGC 131
Score = 28.6 bits (64), Expect = 4.1
Identities = 11/17 (64%), Positives = 12/17 (70%)
Query: 441 PCRQAVIFAGLPKSTVC 457
P +QA FAGLPK T C
Sbjct: 115 PAKQACRFAGLPKPTGC 131
>2hg4_A DEBS, 6-deoxyerythronolide B synthase; ketosynthase,
acyltransferase, module 5, transferase; 2.73A
{Saccharopolyspora erythraea}
Length = 917
Score = 29.9 bits (68), Expect = 4.3
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 29 CTTVNKVCASGMKAIMLASQTLSLGHQDVMVAGGMESMS 67
TV+ C+SG+ A+ LA ++L + +AGG+ MS
Sbjct: 192 AMTVDTACSSGLTALHLAMESLRRDECGLALAGGVTVMS 230
Score = 29.9 bits (68), Expect = 4.3
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 457 CTTVNKVCASGMKAIMLASQTLSLGHQDVMVAGGMESMS 495
TV+ C+SG+ A+ LA ++L + +AGG+ MS
Sbjct: 192 AMTVDTACSSGLTALHLAMESLRRDECGLALAGGVTVMS 230
>2h84_A Steely1; thiolase-fold, type III polyketide synthase, PKS,
chalcone-S synthase superfamily, type I PKS; HET: P6G;
2.90A {Dictyostelium discoideum}
Length = 374
Score = 29.8 bits (67), Expect = 4.3
Identities = 14/86 (16%), Positives = 30/86 (34%), Gaps = 6/86 (6%)
Query: 394 RSSLVSLSATKLGAVAIESAIQKANMDKSDVQEVYMGNVCQAGLGQAPCRQAVIFA--GL 451
++ L A A++ DK D+ + + P + GL
Sbjct: 87 VNNQFKKVVPDLAQQACLRALKDWGGDKGDITHIV---SVTSTGIIIPDVNFKLIDLLGL 143
Query: 452 PKSTVCTTVNKV-CASGMKAIMLASQ 476
K ++N + C +G+ ++ A+
Sbjct: 144 NKDVERVSLNLMGCLAGLSSLRTAAS 169
>3e1h_A PKSIIINC, putative uncharacterized protein; resorcinolic lipid
synthase, type III PKS, acyltransferase, transferase;
2.58A {Neurospora crassa}
Length = 465
Score = 29.7 bits (66), Expect = 4.6
Identities = 11/87 (12%), Positives = 25/87 (28%), Gaps = 2/87 (2%)
Query: 394 RSSLVSLSATKLGAVAIESAIQKANMDKSDVQEVYMGNVCQAGLGQAPCRQAVIFAGLPK 453
+ L A A+ +A + + + + + A GL
Sbjct: 102 LHEVFMSDGVPLAVEASRKAMAEARLVPAQITHMVSTTCTDSANPGYDHYVAKEL-GLSD 160
Query: 454 STVCTTVN-KVCASGMKAIMLASQTLS 479
++ C+ G+ A+ A+
Sbjct: 161 RLEKVLLHGIGCSGGLAALRTAANLCL 187
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding,
RNA methylase, RSMD, SAM-fold, RNA methyltransferase;
1.90A {Mycobacterium tuberculosis}
Length = 189
Score = 29.0 bits (66), Expect = 4.7
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 727 DAKDVPRELSAHYDLVVLDPPFLSDECLTKAAVTA 761
A V ++ DLV+ DPP+ D A + A
Sbjct: 102 VAAVVAAGTTSPVDLVLADPPYNVDSADVDAILAA 136
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase;
chimerical protein, P-loop protein, capsule
biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus
aureus} PDB: 2ved_A*
Length = 271
Score = 29.1 bits (66), Expect = 5.2
Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 16/67 (23%)
Query: 733 RELSAHYDLVVLD-PPFLSDECLTKAAVTAKL---PLFV---------SLTVSGEIMQDL 779
L +Y+ V++D PP + +T A + +K ++V + E+++
Sbjct: 186 DTLLMNYNFVIIDTPPVNT---VTDAQLFSKFTGNVVYVVNSENNNKDEVKKGKELIEAT 242
Query: 780 ALRLLGV 786
+LLGV
Sbjct: 243 GAKLLGV 249
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus,
methyltransferase, adoMet, structural genomics; 1.80A
{Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB:
1wxw_A 2cww_A*
Length = 382
Score = 29.3 bits (66), Expect = 5.3
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Query: 727 DAKDVPRELSAH---YDLVVLDPP-FLSDECLTKAAVTA 761
+A D+ R L +DLVVLDPP F + + A A
Sbjct: 265 NAFDLLRRLEKEGERFDLVVLDPPAFAKGKKDVERAYRA 303
>3or1_C Sulfite reductase GAMA; dissimilatory sulfite reductase, sulfate
reduction, oxidored sulfite reduction; HET: SRM; 1.76A
{Desulfovibrio gigas} PDB: 3or2_C* 2v4j_C* 2xsj_C*
Length = 105
Score = 27.7 bits (62), Expect = 5.8
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 13 PCRQAVIFAGLPKSTVC 29
P + A AGLPK T C
Sbjct: 88 PGKGACKMAGLPKPTGC 104
Score = 27.7 bits (62), Expect = 5.8
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 441 PCRQAVIFAGLPKSTVC 457
P + A AGLPK T C
Sbjct: 88 PGKGACKMAGLPKPTGC 104
>1ji8_A Dissimilatory siroheme-sulfite reductase; orthogonal helical
bundle, structural genomics, PSI, protein structure
initiative; NMR {Pyrobaculum aerophilum} SCOP: d.203.1.1
Length = 111
Score = 27.7 bits (62), Expect = 6.0
Identities = 8/17 (47%), Positives = 8/17 (47%)
Query: 13 PCRQAVIFAGLPKSTVC 29
P A AG PK T C
Sbjct: 94 PAHGACKVAGAPKPTGC 110
Score = 27.7 bits (62), Expect = 6.0
Identities = 8/17 (47%), Positives = 8/17 (47%)
Query: 441 PCRQAVIFAGLPKSTVC 457
P A AG PK T C
Sbjct: 94 PAHGACKVAGAPKPTGC 110
>1sau_A Sulfite reductase, desulfoviridin-type subunit GA; orthogonal
helical bundle, oxidoreductase; 1.12A {Archaeoglobus
fulgidus} PDB: 2a5w_A
Length = 115
Score = 27.8 bits (62), Expect = 6.7
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 13 PCRQAVIFAGLPKSTVC 29
P + A AGLPK T C
Sbjct: 98 PAKDACRIAGLPKPTGC 114
Score = 27.8 bits (62), Expect = 6.7
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 441 PCRQAVIFAGLPKSTVC 457
P + A AGLPK T C
Sbjct: 98 PAKDACRIAGLPKPTGC 114
>2qo3_A Eryaii erythromycin polyketide synthase modules 3; ketosynthase,
acyltransferase, phosphopantetheine, transfera; 2.59A
{Saccharopolyspora erythraea}
Length = 915
Score = 29.1 bits (66), Expect = 6.8
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 29 CTTVNKVCASGMKAIMLASQTLSLGHQDVMVAGGMESMS 67
+V+ C+S + A+ LA ++L G + V GG M+
Sbjct: 170 SISVDTACSSSLVALHLAVESLRKGESSMAVVGGAAVMA 208
Score = 29.1 bits (66), Expect = 6.8
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 457 CTTVNKVCASGMKAIMLASQTLSLGHQDVMVAGGMESMS 495
+V+ C+S + A+ LA ++L G + V GG M+
Sbjct: 170 SISVDTACSSSLVALHLAVESLRKGESSMAVVGGAAVMA 208
>1u0m_A Putative polyketide synthase; type III polyketide synthase, PKS,
bacterial, thiolase fold, beta-alpha-beta-alpha fold,
catalytic triad; HET: 15P; 2.22A {Streptomyces
coelicolor} SCOP: c.95.1.2 c.95.1.2
Length = 382
Score = 28.9 bits (65), Expect = 6.8
Identities = 6/31 (19%), Positives = 13/31 (41%)
Query: 394 RSSLVSLSATKLGAVAIESAIQKANMDKSDV 424
R+ + A I+ A+ A + +D+
Sbjct: 76 RNKVYEREAKSRVPAVIQRALDDAELLATDI 106
>3qxf_A Endoglucanase; cellulase, GH8, cellulose synthesis, cellulose
degradation,; 1.85A {Escherichia coli k-12} PDB: 3qxq_A*
Length = 355
Score = 28.8 bits (64), Expect = 7.3
Identities = 11/58 (18%), Positives = 23/58 (39%)
Query: 272 LANIKKLDIDPSKVNVHGGAVSLGHPIGMSGARIVIHLCHALKSGQKGQLSQFWYDEN 329
+K P KV+V G P+G S A + ++ Q+ +++ + +
Sbjct: 251 ATFTEKNGYPPEKVDVATGKAQGKGPVGFSAAMLPFLQNRDAQAVQRQRVADNFPGSD 308
>1ted_A PKS18; thiolase fold, substrate binding tunnel, transferase; HET:
MYR; 2.25A {Mycobacterium tuberculosis} SCOP: c.95.1.2
PDB: 1tee_A
Length = 393
Score = 28.9 bits (65), Expect = 7.3
Identities = 11/57 (19%), Positives = 18/57 (31%), Gaps = 3/57 (5%)
Query: 370 SRNFASKPGDVFIVSGSRTPMGSF--RSSLVSLSATKLGAVAIESAIQKANMDKSDV 424
+R A P D R P + R L A L + A+ +++
Sbjct: 80 TRRMAVDPLDAKFDVFRREP-ATIRDRMHLFYEHAVPLAVDVSKRALAGLPYRAAEI 135
>1ee0_A 2-pyrone synthase; polyketide synthase, thiolase fold, transferase;
HET: CAA; 2.05A {Gerbera hybrid cultivar} SCOP: c.95.1.2
c.95.1.2 PDB: 1qlv_A
Length = 402
Score = 28.7 bits (64), Expect = 8.8
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 394 RSSLVSLSATKLGAVAIESAIQKANMDKSDV 424
R LV LG A AI + + KS +
Sbjct: 99 RQDLVVTGVPMLGKEAAVKAIDEWGLPKSKI 129
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural
genomics, PSI, protein structure initiative; 1.80A
{Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Length = 396
Score = 28.6 bits (64), Expect = 8.9
Identities = 9/34 (26%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Query: 717 LYPKIRELAPDAKDVPRELSAH---YDLVVLDPP 747
+ +++ + A + +L +D+VVLDPP
Sbjct: 265 VEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLDPP 298
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.132 0.381
Gapped
Lambda K H
0.267 0.0839 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 12,128,695
Number of extensions: 759424
Number of successful extensions: 1812
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1710
Number of HSP's successfully gapped: 128
Length of query: 814
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 713
Effective length of database: 3,881,772
Effective search space: 2767703436
Effective search space used: 2767703436
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.1 bits)