BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1288
(1012 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QFM|A Chain A, Prolyl Oligopeptidase From Porcine Muscle
Length = 710
Score = 486 bits (1250), Expect = e-137, Method: Compositional matrix adjust.
Identities = 238/452 (52%), Positives = 298/452 (65%), Gaps = 55/452 (12%)
Query: 253 YITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLIL 312
Y+TNEG F FKTN+ +PNYRLI IDF + ES WK L+ E++ DVL+W CV ++ L+L
Sbjct: 292 YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVL 351
Query: 313 SYIHHVKNVMHLHDLASGKHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCN 372
Y+H VKN + LHDLA+G L FPL+VG++VG+SG+KK +EIFY F SFL P II+HC+
Sbjct: 352 CYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCD 411
Query: 373 IPARVDPNSKLETSIFREIKVPDFDPSLFETKQVFYPSKDGTKIPMFILSRKGAQLDGNN 432
+ +LE +FRE+ V D S ++T Q+FYPSKDGTKIPMFI+ +KG +LDG++
Sbjct: 412 LT-----KEELEPRVFREVTVKGIDASDYQTVQIFYPSKDGTKIPMFIVHKKGIKLDGSH 466
Query: 433 PCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNV 492
P LYGYGGF +S+ P +SV++++F+R G+ A+ NIRGGGEYGE WH GG L NKQN
Sbjct: 467 PAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNC 526
Query: 493 FDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDC 552
FDDFQCAAEYLI GYT RL I GGSNGGLL A C NQRPDLFG I QVG
Sbjct: 527 FDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVG------- 579
Query: 553 GRWLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWES 612
V+DMLKF+K+TIG+ W +
Sbjct: 580 ------------------------------------------VMDMLKFHKYTIGHAWTT 597
Query: 613 DYGSPANSSQFEYLLGYSPLHNIQGPDELKGKQYPATLLMTADHDDRVSPVHSLKFAATL 672
DYG + FE+L+ YSPLHN++ P E QYP+ LL+TADHDDRV P+HSLKF ATL
Sbjct: 598 DYGXSDSKQHFEWLIKYSPLHNVKLP-EADDIQYPSMLLLTADHDDRVVPLHSLKFIATL 656
Query: 673 QEKLRDYPHQTNPLLIRIETKAGHGGGKPTTK 704
Q + Q NPLLI ++TKAGHG GKPT K
Sbjct: 657 QYIVGRSRKQNNPLLIHVDTKAGHGAGKPTAK 688
Score = 234 bits (598), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 106/188 (56%), Positives = 141/188 (75%)
Query: 33 MTKFEYPKARKNESLVDEYHGVKIPDPYGWMEDPDSEETKKFVDEENAISRPYLEDHPDR 92
M F+YP ++E+ + +YHG K+ DPY W+EDPDSE+TK FV+ +N I+ P+LE P R
Sbjct: 1 MLSFQYPDVYRDETAIQDYHGHKVXDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQXPIR 60
Query: 93 DKVKAELTKMWDYPKYSSPQRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLS 152
K +T+++DYPKYS ++G YF+F+NTGLQN V+Y+QDSL+GEARVFLDPN LS
Sbjct: 61 GLYKERMTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILS 120
Query: 153 DDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLHRLKFVSIAWTH 212
DDGTV+L Y+FSEDG+ AY LS+SGSDW ++ F V KE P+VL R+KF +AWTH
Sbjct: 121 DDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSXMAWTH 180
Query: 213 DHKGVFYS 220
D KG+FY+
Sbjct: 181 DGKGMFYN 188
Score = 135 bits (339), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 65/110 (59%), Positives = 81/110 (73%), Gaps = 1/110 (0%)
Query: 764 VLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLHNIQGPNELKGKQYPATLLMTA 823
V+DMLKF+K+TIG+ W +DYG + FE+L+ YSPLHN++ P E QYP+ LL+TA
Sbjct: 580 VMDMLKFHKYTIGHAWTTDYGXSDSKQHFEWLIKYSPLHNVKLP-EADDIQYPSMLLLTA 638
Query: 824 DHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTK 873
DHDDRV P+HSLKF ATLQ + Q NPLLI ++TKAGHG GKPT K
Sbjct: 639 DHDDRVVPLHSLKFIATLQYIVGRSRKQNNPLLIHVDTKAGHGAGKPTAK 688
Score = 120 bits (300), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 53/105 (50%), Positives = 75/105 (71%), Gaps = 5/105 (4%)
Query: 899 FMSFLQPTIIFHCNIPARVDPNSKLETSIFREIKVPDFDPSLFETKQVFYPSKDGTKIPM 958
F SFL P II+HC++ +LE +FRE+ V D S ++T Q+FYPSKDGTKIPM
Sbjct: 398 FTSFLSPGIIYHCDLT-----KEELEPRVFREVTVKGIDASDYQTVQIFYPSKDGTKIPM 452
Query: 959 FILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNG 1003
FI+ +KG +LDG++P LYGYGGF +S+ P +SV++++F+R G
Sbjct: 453 FIVHKKGIKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGG 497
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 31/51 (60%)
Query: 720 GPVLQRYPETPNKADGSENVRNQDQKLYYHYLGTDQKDDILIAEVLDMLKF 770
G YP+ K+DG+E N QKLYYH LGTDQ +DIL AE D K+
Sbjct: 184 GMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKW 234
>pdb|1VZ3|A Chain A, Prolyl Oligopeptidase From Porcine Brain, T597c Mutant
Length = 710
Score = 485 bits (1249), Expect = e-137, Method: Compositional matrix adjust.
Identities = 238/452 (52%), Positives = 297/452 (65%), Gaps = 55/452 (12%)
Query: 253 YITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLIL 312
Y+TNEG F FKTN+ +PNYRLI IDF + ES WK L+ E++ DVL+W CV ++ L+L
Sbjct: 292 YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVL 351
Query: 313 SYIHHVKNVMHLHDLASGKHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCN 372
Y+H VKN + LHDLA+G L FPL+VG++VG+SG+KK +EIFY F SFL P II+HC+
Sbjct: 352 CYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCD 411
Query: 373 IPARVDPNSKLETSIFREIKVPDFDPSLFETKQVFYPSKDGTKIPMFILSRKGAQLDGNN 432
+ +LE +FRE+ V D S ++T Q+FYPSKDGTKIPMFI+ +KG +LDG++
Sbjct: 412 LT-----KEELEPRVFREVTVKGIDASDYQTVQIFYPSKDGTKIPMFIVHKKGIKLDGSH 466
Query: 433 PCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNV 492
P LYGYGGF +S+ P +SV++++F+R G+ A+ NIRGGGEYGE WH GG L NKQN
Sbjct: 467 PAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNC 526
Query: 493 FDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDC 552
FDDFQCAAEYLI GYT RL I GGSNGGLL A C NQRPDLFG I QVG
Sbjct: 527 FDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVG------- 579
Query: 553 GRWLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWES 612
V+DMLKF+K+TIG+ W
Sbjct: 580 ------------------------------------------VMDMLKFHKYTIGHAWTC 597
Query: 613 DYGSPANSSQFEYLLGYSPLHNIQGPDELKGKQYPATLLMTADHDDRVSPVHSLKFAATL 672
DYG + FE+L+ YSPLHN++ P E QYP+ LL+TADHDDRV P+HSLKF ATL
Sbjct: 598 DYGCSDSKQHFEWLIKYSPLHNVKLP-EADDIQYPSMLLLTADHDDRVVPLHSLKFIATL 656
Query: 673 QEKLRDYPHQTNPLLIRIETKAGHGGGKPTTK 704
Q + Q NPLLI ++TKAGHG GKPT K
Sbjct: 657 QYIVGRSRKQNNPLLIHVDTKAGHGAGKPTAK 688
Score = 234 bits (598), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 106/188 (56%), Positives = 141/188 (75%)
Query: 33 MTKFEYPKARKNESLVDEYHGVKIPDPYGWMEDPDSEETKKFVDEENAISRPYLEDHPDR 92
M F+YP ++E+ + +YHG K+ DPY W+EDPDSE+TK FV+ +N I+ P+LE P R
Sbjct: 1 MLSFQYPDVYRDETAIQDYHGHKVCDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQCPIR 60
Query: 93 DKVKAELTKMWDYPKYSSPQRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLS 152
K +T+++DYPKYS ++G YF+F+NTGLQN V+Y+QDSL+GEARVFLDPN LS
Sbjct: 61 GLYKERMTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILS 120
Query: 153 DDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLHRLKFVSIAWTH 212
DDGTV+L Y+FSEDG+ AY LS+SGSDW ++ F V KE P+VL R+KF +AWTH
Sbjct: 121 DDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTH 180
Query: 213 DHKGVFYS 220
D KG+FY+
Sbjct: 181 DGKGMFYN 188
Score = 135 bits (339), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 65/112 (58%), Positives = 81/112 (72%), Gaps = 1/112 (0%)
Query: 764 VLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLHNIQGPNELKGKQYPATLLMTA 823
V+DMLKF+K+TIG+ W DYG + FE+L+ YSPLHN++ P E QYP+ LL+TA
Sbjct: 580 VMDMLKFHKYTIGHAWTCDYGCSDSKQHFEWLIKYSPLHNVKLP-EADDIQYPSMLLLTA 638
Query: 824 DHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQL 875
DHDDRV P+HSLKF ATLQ + Q NPLLI ++TKAGHG GKPT K +
Sbjct: 639 DHDDRVVPLHSLKFIATLQYIVGRSRKQNNPLLIHVDTKAGHGAGKPTAKVI 690
Score = 119 bits (299), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 53/105 (50%), Positives = 75/105 (71%), Gaps = 5/105 (4%)
Query: 899 FMSFLQPTIIFHCNIPARVDPNSKLETSIFREIKVPDFDPSLFETKQVFYPSKDGTKIPM 958
F SFL P II+HC++ +LE +FRE+ V D S ++T Q+FYPSKDGTKIPM
Sbjct: 398 FTSFLSPGIIYHCDLT-----KEELEPRVFREVTVKGIDASDYQTVQIFYPSKDGTKIPM 452
Query: 959 FILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNG 1003
FI+ +KG +LDG++P LYGYGGF +S+ P +SV++++F+R G
Sbjct: 453 FIVHKKGIKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGG 497
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 31/51 (60%)
Query: 720 GPVLQRYPETPNKADGSENVRNQDQKLYYHYLGTDQKDDILIAEVLDMLKF 770
G YP+ K+DG+E N QKLYYH LGTDQ +DIL AE D K+
Sbjct: 184 GMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKW 234
>pdb|3DDU|A Chain A, Prolyl Oligopeptidase With Gsk552
Length = 709
Score = 474 bits (1219), Expect = e-133, Method: Compositional matrix adjust.
Identities = 237/452 (52%), Positives = 296/452 (65%), Gaps = 55/452 (12%)
Query: 253 YITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLIL 312
Y+TNEG F FKTN+ +PNYR+I IDF + ES WK L+ E++ DVL+W CV ++ L+L
Sbjct: 291 YVTNEGTVFTFKTNRHSPNYRVINIDFTDPEESKWKVLVPEHEKDVLEWIACVRSNFLVL 350
Query: 313 SYIHHVKNVMHLHDLASGKHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCN 372
Y+H VKN + LHDL +G L FPLDVG+IVG+SG+KK +EIFY F SFL P II+HC+
Sbjct: 351 CYLHDVKNTLQLHDLTTGALLKIFPLDVGSIVGYSGQKKDTEIFYQFTSFLSPGIIYHCD 410
Query: 373 IPARVDPNSKLETSIFREIKVPDFDPSLFETKQVFYPSKDGTKIPMFILSRKGAQLDGNN 432
+ +LE +FRE+ V D S ++T Q+FYPSKDGTKIPMFI+ +KG +LDG++
Sbjct: 411 LT-----KEELEPRVFREVTVKGIDASDYQTVQIFYPSKDGTKIPMFIVHKKGIKLDGSH 465
Query: 433 PCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNV 492
P LYGYGGF +S+ P +SV++++F+R GI A+ NIRGGGEYGE WH GG L NKQN
Sbjct: 466 PAFLYGYGGFNISITPNYSVSRLIFVRHMGGILAVANIRGGGEYGETWHKGGILANKQNC 525
Query: 493 FDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDC 552
FDDFQCAAEYLI GYT RL I GGSNGGLL AAC NQRPDLFG I QVG
Sbjct: 526 FDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVAACANQRPDLFGCVIAQVG------- 578
Query: 553 GRWLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWES 612
++ +K FH K+TIG+ W +
Sbjct: 579 ----VMDMLK------FH--------------------------------KYTIGHAWTT 596
Query: 613 DYGSPANSSQFEYLLGYSPLHNIQGPDELKGKQYPATLLMTADHDDRVSPVHSLKFAATL 672
DYG + FE+L+ YSPLHN++ P E QYP+ LL+TADHDDRV P+HSLKF ATL
Sbjct: 597 DYGCSDSKQHFEWLVKYSPLHNVKLP-EADDIQYPSMLLLTADHDDRVVPLHSLKFIATL 655
Query: 673 QEKLRDYPHQTNPLLIRIETKAGHGGGKPTTK 704
Q + Q NPLLI ++TKAGHG GKPT K
Sbjct: 656 QYIVGRSRKQNNPLLIHVDTKAGHGAGKPTAK 687
Score = 234 bits (596), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 107/186 (57%), Positives = 141/186 (75%)
Query: 36 FEYPKARKNESLVDEYHGVKIPDPYGWMEDPDSEETKKFVDEENAISRPYLEDHPDRDKV 95
F+YP ++E+ V +YHG KI DPY W+EDPDSE+TK FV+ +N I+ P+LE P R
Sbjct: 3 FQYPDVYRDETAVQDYHGHKICDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQCPIRGLY 62
Query: 96 KAELTKMWDYPKYSSPQRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDG 155
K +T+++DYPKYS ++G YF+F+NTGLQN V+Y+QDSL+GEARVFLDPN LSDDG
Sbjct: 63 KERMTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDG 122
Query: 156 TVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLHRLKFVSIAWTHDHK 215
TV+L Y+FSEDG+ AY LS+SGSDW ++ F V KE P+VL R+KF +AWTHD K
Sbjct: 123 TVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGK 182
Query: 216 GVFYSN 221
G+FY++
Sbjct: 183 GMFYNS 188
Score = 135 bits (339), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 65/112 (58%), Positives = 82/112 (73%), Gaps = 1/112 (0%)
Query: 764 VLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLHNIQGPNELKGKQYPATLLMTA 823
V+DMLKF+K+TIG+ W +DYG + FE+L+ YSPLHN++ P E QYP+ LL+TA
Sbjct: 579 VMDMLKFHKYTIGHAWTTDYGCSDSKQHFEWLVKYSPLHNVKLP-EADDIQYPSMLLLTA 637
Query: 824 DHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQL 875
DHDDRV P+HSLKF ATLQ + Q NPLLI ++TKAGHG GKPT K +
Sbjct: 638 DHDDRVVPLHSLKFIATLQYIVGRSRKQNNPLLIHVDTKAGHGAGKPTAKVI 689
Score = 119 bits (299), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 53/105 (50%), Positives = 75/105 (71%), Gaps = 5/105 (4%)
Query: 899 FMSFLQPTIIFHCNIPARVDPNSKLETSIFREIKVPDFDPSLFETKQVFYPSKDGTKIPM 958
F SFL P II+HC++ +LE +FRE+ V D S ++T Q+FYPSKDGTKIPM
Sbjct: 397 FTSFLSPGIIYHCDLT-----KEELEPRVFREVTVKGIDASDYQTVQIFYPSKDGTKIPM 451
Query: 959 FILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNG 1003
FI+ +KG +LDG++P LYGYGGF +S+ P +SV++++F+R G
Sbjct: 452 FIVHKKGIKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGG 496
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 31/51 (60%)
Query: 720 GPVLQRYPETPNKADGSENVRNQDQKLYYHYLGTDQKDDILIAEVLDMLKF 770
G YP+ K+DG+E N QKLYYH LGTDQ +DIL AE D K+
Sbjct: 183 GMFYNSYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKW 233
>pdb|1QFS|A Chain A, Prolyl Oligopeptidase From Porcine Muscle With Covalently
Bound Inhibitor Z-Pro-Prolinal
pdb|1H2W|A Chain A, Prolyl Oligopeptidase From Porcine Brain
pdb|3EQ7|A Chain A, Prolyl Oligopeptidase Complexed With
R-Pro-(Decarboxy-Pro)-Type Inhibitors
pdb|3EQ8|A Chain A, Prolyl Oligopeptidase Complexed With
R-Pro-(Decarboxy-Pro)-Type Inhibitors
pdb|3EQ9|A Chain A, Prolyl Oligopeptidase Complexed With
R-Pro-(Decarboxy-Pro)-Type Inhibitors
pdb|2XDW|A Chain A, Inhibition Of Prolyl Oligopeptidase With A Synthetic
Unnatural Dipeptide
pdb|4AMY|A Chain A, Prolyl Oligopeptidase From Porcine Brain With A Covalently
Bound Inhibitor Ic-1
pdb|4AMZ|A Chain A, Prolyl Oligopeptidase From Porcine Brain With A Covalently
Bound Inhibitor Ic-2
pdb|4AN0|A Chain A, Prolyl Oligopeptidase From Porcine Brain With A Covalently
Bound Inhibitor Ic-3
pdb|4AN1|A Chain A, Prolyl Oligopeptidase From Porcine Brain With A Covalently
Bound Inhibitor Ic-4
Length = 710
Score = 473 bits (1218), Expect = e-133, Method: Compositional matrix adjust.
Identities = 235/452 (51%), Positives = 296/452 (65%), Gaps = 55/452 (12%)
Query: 253 YITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLIL 312
Y+TNEG F FKTN+ +PNYRLI IDF + ES WK L+ E++ DVL+W CV ++ L+L
Sbjct: 292 YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVL 351
Query: 313 SYIHHVKNVMHLHDLASGKHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCN 372
Y+H VKN + LHDLA+G L FPL+VG++VG+SG+KK +EIFY F SFL P II+HC+
Sbjct: 352 CYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCD 411
Query: 373 IPARVDPNSKLETSIFREIKVPDFDPSLFETKQVFYPSKDGTKIPMFILSRKGAQLDGNN 432
+ +LE +FRE+ V D S ++T Q+FYPSKDGTKIPMFI+ +KG +LDG++
Sbjct: 412 LT-----KEELEPRVFREVTVKGIDASDYQTVQIFYPSKDGTKIPMFIVHKKGIKLDGSH 466
Query: 433 PCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNV 492
P LYGYGGF +S+ P +SV++++F+R G+ A+ NIRGGGEYGE WH GG L NKQN
Sbjct: 467 PAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNC 526
Query: 493 FDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDC 552
FDDFQCAAEYLI GYT RL I GGSNGGLL A C NQRPDLFG I QVG
Sbjct: 527 FDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVG------- 579
Query: 553 GRWLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWES 612
++ +K FH K+TIG+ W +
Sbjct: 580 ----VMDMLK------FH--------------------------------KYTIGHAWTT 597
Query: 613 DYGSPANSSQFEYLLGYSPLHNIQGPDELKGKQYPATLLMTADHDDRVSPVHSLKFAATL 672
DYG + FE+L+ YSPLHN++ P E QYP+ LL+TADHDDRV P+HSLKF ATL
Sbjct: 598 DYGCSDSKQHFEWLIKYSPLHNVKLP-EADDIQYPSMLLLTADHDDRVVPLHSLKFIATL 656
Query: 673 QEKLRDYPHQTNPLLIRIETKAGHGGGKPTTK 704
Q + Q NPLLI ++TKAGHG GKPT K
Sbjct: 657 QYIVGRSRKQNNPLLIHVDTKAGHGAGKPTAK 688
Score = 234 bits (598), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 106/188 (56%), Positives = 141/188 (75%)
Query: 33 MTKFEYPKARKNESLVDEYHGVKIPDPYGWMEDPDSEETKKFVDEENAISRPYLEDHPDR 92
M F+YP ++E+ + +YHG K+ DPY W+EDPDSE+TK FV+ +N I+ P+LE P R
Sbjct: 1 MLSFQYPDVYRDETAIQDYHGHKVCDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQCPIR 60
Query: 93 DKVKAELTKMWDYPKYSSPQRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLS 152
K +T+++DYPKYS ++G YF+F+NTGLQN V+Y+QDSL+GEARVFLDPN LS
Sbjct: 61 GLYKERMTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILS 120
Query: 153 DDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLHRLKFVSIAWTH 212
DDGTV+L Y+FSEDG+ AY LS+SGSDW ++ F V KE P+VL R+KF +AWTH
Sbjct: 121 DDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTH 180
Query: 213 DHKGVFYS 220
D KG+FY+
Sbjct: 181 DGKGMFYN 188
Score = 135 bits (340), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 65/112 (58%), Positives = 82/112 (73%), Gaps = 1/112 (0%)
Query: 764 VLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLHNIQGPNELKGKQYPATLLMTA 823
V+DMLKF+K+TIG+ W +DYG + FE+L+ YSPLHN++ P E QYP+ LL+TA
Sbjct: 580 VMDMLKFHKYTIGHAWTTDYGCSDSKQHFEWLIKYSPLHNVKLP-EADDIQYPSMLLLTA 638
Query: 824 DHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQL 875
DHDDRV P+HSLKF ATLQ + Q NPLLI ++TKAGHG GKPT K +
Sbjct: 639 DHDDRVVPLHSLKFIATLQYIVGRSRKQNNPLLIHVDTKAGHGAGKPTAKVI 690
Score = 119 bits (299), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 53/105 (50%), Positives = 75/105 (71%), Gaps = 5/105 (4%)
Query: 899 FMSFLQPTIIFHCNIPARVDPNSKLETSIFREIKVPDFDPSLFETKQVFYPSKDGTKIPM 958
F SFL P II+HC++ +LE +FRE+ V D S ++T Q+FYPSKDGTKIPM
Sbjct: 398 FTSFLSPGIIYHCDLT-----KEELEPRVFREVTVKGIDASDYQTVQIFYPSKDGTKIPM 452
Query: 959 FILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNG 1003
FI+ +KG +LDG++P LYGYGGF +S+ P +SV++++F+R G
Sbjct: 453 FIVHKKGIKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGG 497
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 31/51 (60%)
Query: 720 GPVLQRYPETPNKADGSENVRNQDQKLYYHYLGTDQKDDILIAEVLDMLKF 770
G YP+ K+DG+E N QKLYYH LGTDQ +DIL AE D K+
Sbjct: 184 GMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKW 234
>pdb|1E8M|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Mutant,
Complexed With Inhibitor
pdb|1E8N|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Mutant,
Complexed With Peptide
pdb|1UOO|A Chain A, Prolyl Oligopeptidase From Porcine Brain, S554a Mutant
With Bound Peptide Ligand Gly-Phe-Arg-Pro
pdb|1UOP|A Chain A, Prolyl Oligopeptidase From Porcine Brain, S554a Mutant
With Bound Peptide Ligand Gly-Phe-Glu-Pro
pdb|1UOQ|A Chain A, Prolyl Oligopeptidase From Porcine Brain, S554a Mutant
With Bound Peptide Ligand Glu-Phe-Ser-Pro
pdb|1H2Z|A Chain A, Prolyl Oligopeptidase From Porcine Brain, S554a Mutant
With Bound Peptide Ligand Suc-Gly-Pro
Length = 710
Score = 472 bits (1215), Expect = e-133, Method: Compositional matrix adjust.
Identities = 234/452 (51%), Positives = 296/452 (65%), Gaps = 55/452 (12%)
Query: 253 YITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLIL 312
Y+TNEG F FKTN+ +PNYRLI IDF + ES WK L+ E++ DVL+W CV ++ L+L
Sbjct: 292 YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVL 351
Query: 313 SYIHHVKNVMHLHDLASGKHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCN 372
Y+H VKN + LHDLA+G L FPL+VG++VG+SG+KK +EIFY F SFL P II+HC+
Sbjct: 352 CYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCD 411
Query: 373 IPARVDPNSKLETSIFREIKVPDFDPSLFETKQVFYPSKDGTKIPMFILSRKGAQLDGNN 432
+ +LE +FRE+ V D S ++T Q+FYPSKDGTKIPMFI+ +KG +LDG++
Sbjct: 412 LT-----KEELEPRVFREVTVKGIDASDYQTVQIFYPSKDGTKIPMFIVHKKGIKLDGSH 466
Query: 433 PCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNV 492
P LYGYGGF +S+ P +SV++++F+R G+ A+ NIRGGGEYGE WH GG L NKQN
Sbjct: 467 PAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNC 526
Query: 493 FDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDC 552
FDDFQCAAEYLI GYT RL I GG+NGGLL A C NQRPDLFG I QVG
Sbjct: 527 FDDFQCAAEYLIKEGYTSPKRLTINGGANGGLLVATCANQRPDLFGCVIAQVG------- 579
Query: 553 GRWLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWES 612
++ +K FH K+TIG+ W +
Sbjct: 580 ----VMDMLK------FH--------------------------------KYTIGHAWTT 597
Query: 613 DYGSPANSSQFEYLLGYSPLHNIQGPDELKGKQYPATLLMTADHDDRVSPVHSLKFAATL 672
DYG + FE+L+ YSPLHN++ P E QYP+ LL+TADHDDRV P+HSLKF ATL
Sbjct: 598 DYGCSDSKQHFEWLIKYSPLHNVKLP-EADDIQYPSMLLLTADHDDRVVPLHSLKFIATL 656
Query: 673 QEKLRDYPHQTNPLLIRIETKAGHGGGKPTTK 704
Q + Q NPLLI ++TKAGHG GKPT K
Sbjct: 657 QYIVGRSRKQNNPLLIHVDTKAGHGAGKPTAK 688
Score = 234 bits (598), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 106/188 (56%), Positives = 141/188 (75%)
Query: 33 MTKFEYPKARKNESLVDEYHGVKIPDPYGWMEDPDSEETKKFVDEENAISRPYLEDHPDR 92
M F+YP ++E+ + +YHG K+ DPY W+EDPDSE+TK FV+ +N I+ P+LE P R
Sbjct: 1 MLSFQYPDVYRDETAIQDYHGHKVCDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQCPIR 60
Query: 93 DKVKAELTKMWDYPKYSSPQRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLS 152
K +T+++DYPKYS ++G YF+F+NTGLQN V+Y+QDSL+GEARVFLDPN LS
Sbjct: 61 GLYKERMTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILS 120
Query: 153 DDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLHRLKFVSIAWTH 212
DDGTV+L Y+FSEDG+ AY LS+SGSDW ++ F V KE P+VL R+KF +AWTH
Sbjct: 121 DDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTH 180
Query: 213 DHKGVFYS 220
D KG+FY+
Sbjct: 181 DGKGMFYN 188
Score = 135 bits (340), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 65/112 (58%), Positives = 82/112 (73%), Gaps = 1/112 (0%)
Query: 764 VLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLHNIQGPNELKGKQYPATLLMTA 823
V+DMLKF+K+TIG+ W +DYG + FE+L+ YSPLHN++ P E QYP+ LL+TA
Sbjct: 580 VMDMLKFHKYTIGHAWTTDYGCSDSKQHFEWLIKYSPLHNVKLP-EADDIQYPSMLLLTA 638
Query: 824 DHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQL 875
DHDDRV P+HSLKF ATLQ + Q NPLLI ++TKAGHG GKPT K +
Sbjct: 639 DHDDRVVPLHSLKFIATLQYIVGRSRKQNNPLLIHVDTKAGHGAGKPTAKVI 690
Score = 119 bits (299), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 53/105 (50%), Positives = 75/105 (71%), Gaps = 5/105 (4%)
Query: 899 FMSFLQPTIIFHCNIPARVDPNSKLETSIFREIKVPDFDPSLFETKQVFYPSKDGTKIPM 958
F SFL P II+HC++ +LE +FRE+ V D S ++T Q+FYPSKDGTKIPM
Sbjct: 398 FTSFLSPGIIYHCDLT-----KEELEPRVFREVTVKGIDASDYQTVQIFYPSKDGTKIPM 452
Query: 959 FILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNG 1003
FI+ +KG +LDG++P LYGYGGF +S+ P +SV++++F+R G
Sbjct: 453 FIVHKKGIKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGG 497
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 31/51 (60%)
Query: 720 GPVLQRYPETPNKADGSENVRNQDQKLYYHYLGTDQKDDILIAEVLDMLKF 770
G YP+ K+DG+E N QKLYYH LGTDQ +DIL AE D K+
Sbjct: 184 GMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKW 234
>pdb|1H2X|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Y473f Mutant
pdb|1H2Y|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Y473f Mutant
With Covalently Bound Inhibitor Z-Pro-Prolinal
Length = 710
Score = 472 bits (1214), Expect = e-133, Method: Compositional matrix adjust.
Identities = 234/452 (51%), Positives = 296/452 (65%), Gaps = 55/452 (12%)
Query: 253 YITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLIL 312
Y+TNEG F FKTN+ +PNYRLI IDF + ES WK L+ E++ DVL+W CV ++ L+L
Sbjct: 292 YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVL 351
Query: 313 SYIHHVKNVMHLHDLASGKHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCN 372
Y+H VKN + LHDLA+G L FPL+VG++VG+SG+KK +EIFY F SFL P II+HC+
Sbjct: 352 CYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCD 411
Query: 373 IPARVDPNSKLETSIFREIKVPDFDPSLFETKQVFYPSKDGTKIPMFILSRKGAQLDGNN 432
+ +LE +FRE+ V D S ++T Q+FYPSKDGTKIPMFI+ +KG +LDG++
Sbjct: 412 LT-----KEELEPRVFREVTVKGIDASDYQTVQIFYPSKDGTKIPMFIVHKKGIKLDGSH 466
Query: 433 PCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNV 492
P LYG+GGF +S+ P +SV++++F+R G+ A+ NIRGGGEYGE WH GG L NKQN
Sbjct: 467 PAFLYGFGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNC 526
Query: 493 FDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDC 552
FDDFQCAAEYLI GYT RL I GGSNGGLL A C NQRPDLFG I QVG
Sbjct: 527 FDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVG------- 579
Query: 553 GRWLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWES 612
++ +K FH K+TIG+ W +
Sbjct: 580 ----VMDMLK------FH--------------------------------KYTIGHAWTT 597
Query: 613 DYGSPANSSQFEYLLGYSPLHNIQGPDELKGKQYPATLLMTADHDDRVSPVHSLKFAATL 672
DYG + FE+L+ YSPLHN++ P E QYP+ LL+TADHDDRV P+HSLKF ATL
Sbjct: 598 DYGCSDSKQHFEWLIKYSPLHNVKLP-EADDIQYPSMLLLTADHDDRVVPLHSLKFIATL 656
Query: 673 QEKLRDYPHQTNPLLIRIETKAGHGGGKPTTK 704
Q + Q NPLLI ++TKAGHG GKPT K
Sbjct: 657 QYIVGRSRKQNNPLLIHVDTKAGHGAGKPTAK 688
Score = 234 bits (598), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 106/188 (56%), Positives = 141/188 (75%)
Query: 33 MTKFEYPKARKNESLVDEYHGVKIPDPYGWMEDPDSEETKKFVDEENAISRPYLEDHPDR 92
M F+YP ++E+ + +YHG K+ DPY W+EDPDSE+TK FV+ +N I+ P+LE P R
Sbjct: 1 MLSFQYPDVYRDETAIQDYHGHKVCDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQCPIR 60
Query: 93 DKVKAELTKMWDYPKYSSPQRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLS 152
K +T+++DYPKYS ++G YF+F+NTGLQN V+Y+QDSL+GEARVFLDPN LS
Sbjct: 61 GLYKERMTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILS 120
Query: 153 DDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLHRLKFVSIAWTH 212
DDGTV+L Y+FSEDG+ AY LS+SGSDW ++ F V KE P+VL R+KF +AWTH
Sbjct: 121 DDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTH 180
Query: 213 DHKGVFYS 220
D KG+FY+
Sbjct: 181 DGKGMFYN 188
Score = 135 bits (340), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 65/112 (58%), Positives = 82/112 (73%), Gaps = 1/112 (0%)
Query: 764 VLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLHNIQGPNELKGKQYPATLLMTA 823
V+DMLKF+K+TIG+ W +DYG + FE+L+ YSPLHN++ P E QYP+ LL+TA
Sbjct: 580 VMDMLKFHKYTIGHAWTTDYGCSDSKQHFEWLIKYSPLHNVKLP-EADDIQYPSMLLLTA 638
Query: 824 DHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQL 875
DHDDRV P+HSLKF ATLQ + Q NPLLI ++TKAGHG GKPT K +
Sbjct: 639 DHDDRVVPLHSLKFIATLQYIVGRSRKQNNPLLIHVDTKAGHGAGKPTAKVI 690
Score = 118 bits (295), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 52/105 (49%), Positives = 75/105 (71%), Gaps = 5/105 (4%)
Query: 899 FMSFLQPTIIFHCNIPARVDPNSKLETSIFREIKVPDFDPSLFETKQVFYPSKDGTKIPM 958
F SFL P II+HC++ +LE +FRE+ V D S ++T Q+FYPSKDGTKIPM
Sbjct: 398 FTSFLSPGIIYHCDLT-----KEELEPRVFREVTVKGIDASDYQTVQIFYPSKDGTKIPM 452
Query: 959 FILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNG 1003
FI+ +KG +LDG++P LYG+GGF +S+ P +SV++++F+R G
Sbjct: 453 FIVHKKGIKLDGSHPAFLYGFGGFNISITPNYSVSRLIFVRHMGG 497
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 31/51 (60%)
Query: 720 GPVLQRYPETPNKADGSENVRNQDQKLYYHYLGTDQKDDILIAEVLDMLKF 770
G YP+ K+DG+E N QKLYYH LGTDQ +DIL AE D K+
Sbjct: 184 GMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKW 234
>pdb|1VZ2|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Y73c/v427c/c255t
Mutant
Length = 710
Score = 472 bits (1214), Expect = e-133, Method: Compositional matrix adjust.
Identities = 234/452 (51%), Positives = 295/452 (65%), Gaps = 55/452 (12%)
Query: 253 YITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLIL 312
Y+TNEG F FKTN+ +PNYRLI IDF + ES WK L+ E++ DVL+W CV ++ L+L
Sbjct: 292 YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVL 351
Query: 313 SYIHHVKNVMHLHDLASGKHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCN 372
Y+H VKN + LHDLA+G L FPL+VG++VG+SG+KK +EIFY F SFL P II+HC+
Sbjct: 352 CYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCD 411
Query: 373 IPARVDPNSKLETSIFREIKVPDFDPSLFETKQVFYPSKDGTKIPMFILSRKGAQLDGNN 432
+ +LE +FRE+ D S ++T Q+FYPSKDGTKIPMFI+ +KG +LDG++
Sbjct: 412 LT-----KEELEPRVFREVTCKGIDASDYQTVQIFYPSKDGTKIPMFIVHKKGIKLDGSH 466
Query: 433 PCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNV 492
P LYGYGGF +S+ P +SV++++F+R G+ A+ NIRGGGEYGE WH GG L NKQN
Sbjct: 467 PAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNC 526
Query: 493 FDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDC 552
FDDFQCAAEYLI GYT RL I GGSNGGLL A C NQRPDLFG I QVG
Sbjct: 527 FDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVG------- 579
Query: 553 GRWLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWES 612
++ +K FH K+TIG+ W +
Sbjct: 580 ----VMDMLK------FH--------------------------------KYTIGHAWTT 597
Query: 613 DYGSPANSSQFEYLLGYSPLHNIQGPDELKGKQYPATLLMTADHDDRVSPVHSLKFAATL 672
DYG + FE+L+ YSPLHN++ P E QYP+ LL+TADHDDRV P+HSLKF ATL
Sbjct: 598 DYGCSDSKQHFEWLIKYSPLHNVKLP-EADDIQYPSMLLLTADHDDRVVPLHSLKFIATL 656
Query: 673 QEKLRDYPHQTNPLLIRIETKAGHGGGKPTTK 704
Q + Q NPLLI ++TKAGHG GKPT K
Sbjct: 657 QYIVGRSRKQNNPLLIHVDTKAGHGAGKPTAK 688
Score = 231 bits (590), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 105/188 (55%), Positives = 140/188 (74%)
Query: 33 MTKFEYPKARKNESLVDEYHGVKIPDPYGWMEDPDSEETKKFVDEENAISRPYLEDHPDR 92
M F+YP ++E+ + +YHG K+ DPY W+EDPDSE+TK FV+ +N I+ P+LE P R
Sbjct: 1 MLSFQYPDVYRDETAIQDYHGHKVCDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQCPIR 60
Query: 93 DKVKAELTKMWDYPKYSSPQRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLS 152
K +T+++D PKYS ++G YF+F+NTGLQN V+Y+QDSL+GEARVFLDPN LS
Sbjct: 61 GLYKERMTELYDCPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILS 120
Query: 153 DDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLHRLKFVSIAWTH 212
DDGTV+L Y+FSEDG+ AY LS+SGSDW ++ F V KE P+VL R+KF +AWTH
Sbjct: 121 DDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTH 180
Query: 213 DHKGVFYS 220
D KG+FY+
Sbjct: 181 DGKGMFYN 188
Score = 135 bits (340), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 65/112 (58%), Positives = 82/112 (73%), Gaps = 1/112 (0%)
Query: 764 VLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLHNIQGPNELKGKQYPATLLMTA 823
V+DMLKF+K+TIG+ W +DYG + FE+L+ YSPLHN++ P E QYP+ LL+TA
Sbjct: 580 VMDMLKFHKYTIGHAWTTDYGCSDSKQHFEWLIKYSPLHNVKLP-EADDIQYPSMLLLTA 638
Query: 824 DHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQL 875
DHDDRV P+HSLKF ATLQ + Q NPLLI ++TKAGHG GKPT K +
Sbjct: 639 DHDDRVVPLHSLKFIATLQYIVGRSRKQNNPLLIHVDTKAGHGAGKPTAKVI 690
Score = 118 bits (295), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 52/105 (49%), Positives = 74/105 (70%), Gaps = 5/105 (4%)
Query: 899 FMSFLQPTIIFHCNIPARVDPNSKLETSIFREIKVPDFDPSLFETKQVFYPSKDGTKIPM 958
F SFL P II+HC++ +LE +FRE+ D S ++T Q+FYPSKDGTKIPM
Sbjct: 398 FTSFLSPGIIYHCDLT-----KEELEPRVFREVTCKGIDASDYQTVQIFYPSKDGTKIPM 452
Query: 959 FILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNG 1003
FI+ +KG +LDG++P LYGYGGF +S+ P +SV++++F+R G
Sbjct: 453 FIVHKKGIKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGG 497
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 31/51 (60%)
Query: 720 GPVLQRYPETPNKADGSENVRNQDQKLYYHYLGTDQKDDILIAEVLDMLKF 770
G YP+ K+DG+E N QKLYYH LGTDQ +DIL AE D K+
Sbjct: 184 GMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKW 234
>pdb|1O6G|A Chain A, Prolyl Oligopeptidase From Porcine Brain, D641n Mutant
With Bound Peptide Ligand Suc-Gly-Pro
Length = 710
Score = 471 bits (1213), Expect = e-133, Method: Compositional matrix adjust.
Identities = 234/452 (51%), Positives = 296/452 (65%), Gaps = 55/452 (12%)
Query: 253 YITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLIL 312
Y+TNEG F FKTN+ +PNYRLI IDF + ES WK L+ E++ DVL+W CV ++ L+L
Sbjct: 292 YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVL 351
Query: 313 SYIHHVKNVMHLHDLASGKHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCN 372
Y+H VKN + LHDLA+G L FPL+VG++VG+SG+KK +EIFY F SFL P II+HC+
Sbjct: 352 CYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCD 411
Query: 373 IPARVDPNSKLETSIFREIKVPDFDPSLFETKQVFYPSKDGTKIPMFILSRKGAQLDGNN 432
+ +LE +FRE+ V D S ++T Q+FYPSKDGTKIPMFI+ +KG +LDG++
Sbjct: 412 LT-----KEELEPRVFREVTVKGIDASDYQTVQIFYPSKDGTKIPMFIVHKKGIKLDGSH 466
Query: 433 PCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNV 492
P LYGYGGF +S+ P +SV++++F+R G+ A+ NIRGGGEYGE WH GG L NKQN
Sbjct: 467 PAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNC 526
Query: 493 FDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDC 552
FDDFQCAAEYLI GYT RL I GGSNGGLL A C NQRPDLFG I QVG
Sbjct: 527 FDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVG------- 579
Query: 553 GRWLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWES 612
++ +K FH K+TIG+ W +
Sbjct: 580 ----VMDMLK------FH--------------------------------KYTIGHAWTT 597
Query: 613 DYGSPANSSQFEYLLGYSPLHNIQGPDELKGKQYPATLLMTADHDDRVSPVHSLKFAATL 672
DYG + FE+L+ YSPLHN++ P E QYP+ LL+TADH+DRV P+HSLKF ATL
Sbjct: 598 DYGCSDSKQHFEWLIKYSPLHNVKLP-EADDIQYPSMLLLTADHNDRVVPLHSLKFIATL 656
Query: 673 QEKLRDYPHQTNPLLIRIETKAGHGGGKPTTK 704
Q + Q NPLLI ++TKAGHG GKPT K
Sbjct: 657 QYIVGRSRKQNNPLLIHVDTKAGHGAGKPTAK 688
Score = 234 bits (598), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 106/188 (56%), Positives = 141/188 (75%)
Query: 33 MTKFEYPKARKNESLVDEYHGVKIPDPYGWMEDPDSEETKKFVDEENAISRPYLEDHPDR 92
M F+YP ++E+ + +YHG K+ DPY W+EDPDSE+TK FV+ +N I+ P+LE P R
Sbjct: 1 MLSFQYPDVYRDETAIQDYHGHKVCDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQCPIR 60
Query: 93 DKVKAELTKMWDYPKYSSPQRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLS 152
K +T+++DYPKYS ++G YF+F+NTGLQN V+Y+QDSL+GEARVFLDPN LS
Sbjct: 61 GLYKERMTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILS 120
Query: 153 DDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLHRLKFVSIAWTH 212
DDGTV+L Y+FSEDG+ AY LS+SGSDW ++ F V KE P+VL R+KF +AWTH
Sbjct: 121 DDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTH 180
Query: 213 DHKGVFYS 220
D KG+FY+
Sbjct: 181 DGKGMFYN 188
Score = 133 bits (335), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 64/112 (57%), Positives = 82/112 (73%), Gaps = 1/112 (0%)
Query: 764 VLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLHNIQGPNELKGKQYPATLLMTA 823
V+DMLKF+K+TIG+ W +DYG + FE+L+ YSPLHN++ P E QYP+ LL+TA
Sbjct: 580 VMDMLKFHKYTIGHAWTTDYGCSDSKQHFEWLIKYSPLHNVKLP-EADDIQYPSMLLLTA 638
Query: 824 DHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQL 875
DH+DRV P+HSLKF ATLQ + Q NPLLI ++TKAGHG GKPT K +
Sbjct: 639 DHNDRVVPLHSLKFIATLQYIVGRSRKQNNPLLIHVDTKAGHGAGKPTAKVI 690
Score = 119 bits (299), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 53/105 (50%), Positives = 75/105 (71%), Gaps = 5/105 (4%)
Query: 899 FMSFLQPTIIFHCNIPARVDPNSKLETSIFREIKVPDFDPSLFETKQVFYPSKDGTKIPM 958
F SFL P II+HC++ +LE +FRE+ V D S ++T Q+FYPSKDGTKIPM
Sbjct: 398 FTSFLSPGIIYHCDLT-----KEELEPRVFREVTVKGIDASDYQTVQIFYPSKDGTKIPM 452
Query: 959 FILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNG 1003
FI+ +KG +LDG++P LYGYGGF +S+ P +SV++++F+R G
Sbjct: 453 FIVHKKGIKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGG 497
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 30/51 (58%)
Query: 720 GPVLQRYPETPNKADGSENVRNQDQKLYYHYLGTDQKDDILIAEVLDMLKF 770
G YP+ K+DG+E N QKLYYH LGTDQ +DIL E D K+
Sbjct: 184 GMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCVEFPDEPKW 234
>pdb|1E5T|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Mutant
Length = 710
Score = 471 bits (1212), Expect = e-133, Method: Compositional matrix adjust.
Identities = 234/452 (51%), Positives = 295/452 (65%), Gaps = 55/452 (12%)
Query: 253 YITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLIL 312
Y+TNEG F FKTN+ +PNYRLI IDF + ES WK L+ E++ DVL+W CV ++ L+L
Sbjct: 292 YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVL 351
Query: 313 SYIHHVKNVMHLHDLASGKHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCN 372
Y+H VKN + LHDLA+G L FPL+VG++VG+SG+KK +EIFY F SFL P II+HC+
Sbjct: 352 CYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYCFTSFLSPGIIYHCD 411
Query: 373 IPARVDPNSKLETSIFREIKVPDFDPSLFETKQVFYPSKDGTKIPMFILSRKGAQLDGNN 432
+ +LE +FRE+ V D S ++T Q+FYPSKDGTKIPMFI+ +KG +LDG++
Sbjct: 412 LT-----KEELEPRVFREVTVKGIDASDYQTVQIFYPSKDGTKIPMFIVHKKGIKLDGSH 466
Query: 433 PCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNV 492
P LYGYGGF +S+ P +SV++++F+R G+ A+ NIRGGGEYGE WH GG L NKQN
Sbjct: 467 PAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNC 526
Query: 493 FDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDC 552
FDDFQCAAEYLI GYT RL I GGSNGGLL A C NQRPDLFG I QVG
Sbjct: 527 FDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVG------- 579
Query: 553 GRWLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWES 612
++ +K FH K+TIG+ W +
Sbjct: 580 ----VMDMLK------FH--------------------------------KYTIGHAWTT 597
Query: 613 DYGSPANSSQFEYLLGYSPLHNIQGPDELKGKQYPATLLMTADHDDRVSPVHSLKFAATL 672
DYG + FE+L+ YSPLHN++ P E QYP+ LL+TADHDDRV P+HSLKF ATL
Sbjct: 598 DYGCSDSKQHFEWLIKYSPLHNVKLP-EADDIQYPSMLLLTADHDDRVVPLHSLKFIATL 656
Query: 673 QEKLRDYPHQTNPLLIRIETKAGHGGGKPTTK 704
Q + Q NPLLI ++TKAGHG G PT K
Sbjct: 657 QYIVGRSRKQNNPLLIHVDTKAGHGAGMPTAK 688
Score = 234 bits (598), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 106/188 (56%), Positives = 141/188 (75%)
Query: 33 MTKFEYPKARKNESLVDEYHGVKIPDPYGWMEDPDSEETKKFVDEENAISRPYLEDHPDR 92
M F+YP ++E+ + +YHG K+ DPY W+EDPDSE+TK FV+ +N I+ P+LE P R
Sbjct: 1 MLSFQYPDVYRDETAIQDYHGHKVCDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQCPIR 60
Query: 93 DKVKAELTKMWDYPKYSSPQRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLS 152
K +T+++DYPKYS ++G YF+F+NTGLQN V+Y+QDSL+GEARVFLDPN LS
Sbjct: 61 GLYKERMTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILS 120
Query: 153 DDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLHRLKFVSIAWTH 212
DDGTV+L Y+FSEDG+ AY LS+SGSDW ++ F V KE P+VL R+KF +AWTH
Sbjct: 121 DDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTH 180
Query: 213 DHKGVFYS 220
D KG+FY+
Sbjct: 181 DGKGMFYN 188
Score = 133 bits (334), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 64/112 (57%), Positives = 81/112 (72%), Gaps = 1/112 (0%)
Query: 764 VLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLHNIQGPNELKGKQYPATLLMTA 823
V+DMLKF+K+TIG+ W +DYG + FE+L+ YSPLHN++ P E QYP+ LL+TA
Sbjct: 580 VMDMLKFHKYTIGHAWTTDYGCSDSKQHFEWLIKYSPLHNVKLP-EADDIQYPSMLLLTA 638
Query: 824 DHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQL 875
DHDDRV P+HSLKF ATLQ + Q NPLLI ++TKAGHG G PT K +
Sbjct: 639 DHDDRVVPLHSLKFIATLQYIVGRSRKQNNPLLIHVDTKAGHGAGMPTAKVI 690
Score = 119 bits (299), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 53/106 (50%), Positives = 75/106 (70%), Gaps = 5/106 (4%)
Query: 898 TFMSFLQPTIIFHCNIPARVDPNSKLETSIFREIKVPDFDPSLFETKQVFYPSKDGTKIP 957
F SFL P II+HC++ +LE +FRE+ V D S ++T Q+FYPSKDGTKIP
Sbjct: 397 CFTSFLSPGIIYHCDLT-----KEELEPRVFREVTVKGIDASDYQTVQIFYPSKDGTKIP 451
Query: 958 MFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNG 1003
MFI+ +KG +LDG++P LYGYGGF +S+ P +SV++++F+R G
Sbjct: 452 MFIVHKKGIKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGG 497
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 31/51 (60%)
Query: 720 GPVLQRYPETPNKADGSENVRNQDQKLYYHYLGTDQKDDILIAEVLDMLKF 770
G YP+ K+DG+E N QKLYYH LGTDQ +DIL AE D K+
Sbjct: 184 GMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKW 234
>pdb|1O6F|A Chain A, Prolyl Oligopeptidase From Porcine Brain, D641a Mutant
With Bound Peptide Ligand Suc-Gly-Pro
Length = 710
Score = 471 bits (1211), Expect = e-132, Method: Compositional matrix adjust.
Identities = 234/452 (51%), Positives = 295/452 (65%), Gaps = 55/452 (12%)
Query: 253 YITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLIL 312
Y+TNEG F FKTN+ +PNYRLI IDF + ES WK L+ E++ DVL+W CV ++ L+L
Sbjct: 292 YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVL 351
Query: 313 SYIHHVKNVMHLHDLASGKHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCN 372
Y+H VKN + LHDLA+G L FPL+VG++VG+SG+KK +EIFY F SFL P II+HC+
Sbjct: 352 CYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCD 411
Query: 373 IPARVDPNSKLETSIFREIKVPDFDPSLFETKQVFYPSKDGTKIPMFILSRKGAQLDGNN 432
+ +LE +FRE+ V D S ++T Q+FYPSKDGTKIPMFI+ +KG +LDG++
Sbjct: 412 LT-----KEELEPRVFREVTVKGIDASDYQTVQIFYPSKDGTKIPMFIVHKKGIKLDGSH 466
Query: 433 PCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNV 492
P LYGYGGF +S+ P +SV++++F+R G+ A+ NIRGGGEYGE WH GG L NKQN
Sbjct: 467 PAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNC 526
Query: 493 FDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDC 552
FDDFQCAAEYLI GYT RL I GGSNGGLL A C NQRPDLFG I QVG
Sbjct: 527 FDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVG------- 579
Query: 553 GRWLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWES 612
++ +K FH K+TIG+ W +
Sbjct: 580 ----VMDMLK------FH--------------------------------KYTIGHAWTT 597
Query: 613 DYGSPANSSQFEYLLGYSPLHNIQGPDELKGKQYPATLLMTADHDDRVSPVHSLKFAATL 672
DYG + FE+L+ YSPLHN++ P E QYP+ LL+TADH DRV P+HSLKF ATL
Sbjct: 598 DYGCSDSKQHFEWLIKYSPLHNVKLP-EADDIQYPSMLLLTADHADRVVPLHSLKFIATL 656
Query: 673 QEKLRDYPHQTNPLLIRIETKAGHGGGKPTTK 704
Q + Q NPLLI ++TKAGHG GKPT K
Sbjct: 657 QYIVGRSRKQNNPLLIHVDTKAGHGAGKPTAK 688
Score = 234 bits (598), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 106/188 (56%), Positives = 141/188 (75%)
Query: 33 MTKFEYPKARKNESLVDEYHGVKIPDPYGWMEDPDSEETKKFVDEENAISRPYLEDHPDR 92
M F+YP ++E+ + +YHG K+ DPY W+EDPDSE+TK FV+ +N I+ P+LE P R
Sbjct: 1 MLSFQYPDVYRDETAIQDYHGHKVCDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQCPIR 60
Query: 93 DKVKAELTKMWDYPKYSSPQRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLS 152
K +T+++DYPKYS ++G YF+F+NTGLQN V+Y+QDSL+GEARVFLDPN LS
Sbjct: 61 GLYKERMTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILS 120
Query: 153 DDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLHRLKFVSIAWTH 212
DDGTV+L Y+FSEDG+ AY LS+SGSDW ++ F V KE P+VL R+KF +AWTH
Sbjct: 121 DDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTH 180
Query: 213 DHKGVFYS 220
D KG+FY+
Sbjct: 181 DGKGMFYN 188
Score = 132 bits (333), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 64/112 (57%), Positives = 81/112 (72%), Gaps = 1/112 (0%)
Query: 764 VLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLHNIQGPNELKGKQYPATLLMTA 823
V+DMLKF+K+TIG+ W +DYG + FE+L+ YSPLHN++ P E QYP+ LL+TA
Sbjct: 580 VMDMLKFHKYTIGHAWTTDYGCSDSKQHFEWLIKYSPLHNVKLP-EADDIQYPSMLLLTA 638
Query: 824 DHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQL 875
DH DRV P+HSLKF ATLQ + Q NPLLI ++TKAGHG GKPT K +
Sbjct: 639 DHADRVVPLHSLKFIATLQYIVGRSRKQNNPLLIHVDTKAGHGAGKPTAKVI 690
Score = 119 bits (299), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 53/105 (50%), Positives = 75/105 (71%), Gaps = 5/105 (4%)
Query: 899 FMSFLQPTIIFHCNIPARVDPNSKLETSIFREIKVPDFDPSLFETKQVFYPSKDGTKIPM 958
F SFL P II+HC++ +LE +FRE+ V D S ++T Q+FYPSKDGTKIPM
Sbjct: 398 FTSFLSPGIIYHCDLT-----KEELEPRVFREVTVKGIDASDYQTVQIFYPSKDGTKIPM 452
Query: 959 FILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNG 1003
FI+ +KG +LDG++P LYGYGGF +S+ P +SV++++F+R G
Sbjct: 453 FIVHKKGIKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGG 497
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 31/51 (60%)
Query: 720 GPVLQRYPETPNKADGSENVRNQDQKLYYHYLGTDQKDDILIAEVLDMLKF 770
G YP+ K+DG+E N QKLYYH LGTDQ +DIL AE D K+
Sbjct: 184 GMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKW 234
>pdb|4AX4|A Chain A, Prolyl Oligopeptidase From Porcine Brain, H680a Mutant
Length = 710
Score = 470 bits (1209), Expect = e-132, Method: Compositional matrix adjust.
Identities = 234/452 (51%), Positives = 295/452 (65%), Gaps = 55/452 (12%)
Query: 253 YITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLIL 312
Y+TNEG F FKTN+ +PNYRLI IDF + ES WK L+ E++ DVL+W CV ++ L+L
Sbjct: 292 YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVL 351
Query: 313 SYIHHVKNVMHLHDLASGKHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCN 372
Y+H VKN + LHDLA+G L FPL+VG++VG+SG+KK +EIFY F SFL P II+HC+
Sbjct: 352 CYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCD 411
Query: 373 IPARVDPNSKLETSIFREIKVPDFDPSLFETKQVFYPSKDGTKIPMFILSRKGAQLDGNN 432
+ +LE +FRE+ V D S ++T Q+FYPSKDGTKIPMFI+ +KG +LDG++
Sbjct: 412 LT-----KEELEPRVFREVTVKGIDASDYQTVQIFYPSKDGTKIPMFIVHKKGIKLDGSH 466
Query: 433 PCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNV 492
P LYGYGGF +S+ P +SV++++F+R G+ A+ NIRGGGEYGE WH GG L NKQN
Sbjct: 467 PAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNC 526
Query: 493 FDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDC 552
FDDFQCAAEYLI GYT RL I GGSNGGLL A C NQRPDLFG I QVG
Sbjct: 527 FDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVG------- 579
Query: 553 GRWLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWES 612
++ +K FH K+TIG+ W +
Sbjct: 580 ----VMDMLK------FH--------------------------------KYTIGHAWTT 597
Query: 613 DYGSPANSSQFEYLLGYSPLHNIQGPDELKGKQYPATLLMTADHDDRVSPVHSLKFAATL 672
DYG + FE+L+ YSPLHN++ P E QYP+ LL+TADHDDRV P+HSLKF ATL
Sbjct: 598 DYGCSDSKQHFEWLIKYSPLHNVKLP-EADDIQYPSMLLLTADHDDRVVPLHSLKFIATL 656
Query: 673 QEKLRDYPHQTNPLLIRIETKAGHGGGKPTTK 704
Q + Q NPLLI ++TKAG G GKPT K
Sbjct: 657 QYIVGRSRKQNNPLLIHVDTKAGAGAGKPTAK 688
Score = 234 bits (598), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 106/188 (56%), Positives = 141/188 (75%)
Query: 33 MTKFEYPKARKNESLVDEYHGVKIPDPYGWMEDPDSEETKKFVDEENAISRPYLEDHPDR 92
M F+YP ++E+ + +YHG K+ DPY W+EDPDSE+TK FV+ +N I+ P+LE P R
Sbjct: 1 MLSFQYPDVYRDETAIQDYHGHKVCDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQCPIR 60
Query: 93 DKVKAELTKMWDYPKYSSPQRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLS 152
K +T+++DYPKYS ++G YF+F+NTGLQN V+Y+QDSL+GEARVFLDPN LS
Sbjct: 61 GLYKERMTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILS 120
Query: 153 DDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLHRLKFVSIAWTH 212
DDGTV+L Y+FSEDG+ AY LS+SGSDW ++ F V KE P+VL R+KF +AWTH
Sbjct: 121 DDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTH 180
Query: 213 DHKGVFYS 220
D KG+FY+
Sbjct: 181 DGKGMFYN 188
Score = 132 bits (331), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 64/112 (57%), Positives = 81/112 (72%), Gaps = 1/112 (0%)
Query: 764 VLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLHNIQGPNELKGKQYPATLLMTA 823
V+DMLKF+K+TIG+ W +DYG + FE+L+ YSPLHN++ P E QYP+ LL+TA
Sbjct: 580 VMDMLKFHKYTIGHAWTTDYGCSDSKQHFEWLIKYSPLHNVKLP-EADDIQYPSMLLLTA 638
Query: 824 DHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQL 875
DHDDRV P+HSLKF ATLQ + Q NPLLI ++TKAG G GKPT K +
Sbjct: 639 DHDDRVVPLHSLKFIATLQYIVGRSRKQNNPLLIHVDTKAGAGAGKPTAKVI 690
Score = 119 bits (299), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 53/105 (50%), Positives = 75/105 (71%), Gaps = 5/105 (4%)
Query: 899 FMSFLQPTIIFHCNIPARVDPNSKLETSIFREIKVPDFDPSLFETKQVFYPSKDGTKIPM 958
F SFL P II+HC++ +LE +FRE+ V D S ++T Q+FYPSKDGTKIPM
Sbjct: 398 FTSFLSPGIIYHCDLT-----KEELEPRVFREVTVKGIDASDYQTVQIFYPSKDGTKIPM 452
Query: 959 FILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNG 1003
FI+ +KG +LDG++P LYGYGGF +S+ P +SV++++F+R G
Sbjct: 453 FIVHKKGIKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGG 497
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 31/51 (60%)
Query: 720 GPVLQRYPETPNKADGSENVRNQDQKLYYHYLGTDQKDDILIAEVLDMLKF 770
G YP+ K+DG+E N QKLYYH LGTDQ +DIL AE D K+
Sbjct: 184 GMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKW 234
>pdb|1YR2|A Chain A, Structural And Mechanistic Analysis Of Two Prolyl
Endopeptidases: Role Of Inter-Domain Dynamics In
Catalysis And Specificity
Length = 741
Score = 344 bits (883), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 251/771 (32%), Positives = 361/771 (46%), Gaps = 148/771 (19%)
Query: 16 LVHANTAQTLSQSKFKAMTKFEYPKARKNESLVDEYHGVKIPDPYGWMEDPDSEETK--K 73
+ A T TL+ K +AM A LV+++ G K+ DP+ W+E + K
Sbjct: 19 VAFAQTPPTLA--KDQAMPSLPPYPASPQVPLVEDHFGEKVSDPWRWLEADVRTDAKVAA 76
Query: 74 FVDEENAISRPYLEDHPDRDKVKAELTKMWDYPKYSSPQRQGDHYFFFHNTGLQNHSVMY 133
+V ++A + YL+ P+R ++ + + DY ++ PQR+G F+ N+GL N S +
Sbjct: 77 WVQAQSAYTAAYLKQLPERAALEKRMKALIDYERFGLPQRRGASVFYSWNSGLMNQSQLL 136
Query: 134 IQDS---LDGEARVFLDPNNLSDDGTVSLGSYSFSE------------------------ 166
++ + + + RV LDPN + DG +L +++ S+
Sbjct: 137 VRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGV 196
Query: 167 -DGKTLAYCLSS---SGSDWT---SMHFKDVATGKEYPEVLHRLKFVSIAWTHD------ 213
DGK LA L SG W ++ + A KE + L + W H
Sbjct: 197 ADGKPLADELKWVKFSGLAWLGNDALLYSRFAEPKEG-QAFQALNYNQTVWLHRLGTPQS 255
Query: 214 -HKGVFYSNQEPXXXXXXXXXXXXXXAYHL---------TVNVAPITS------------ 251
+ VF + + P TV+VA +T+
Sbjct: 256 ADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPD 315
Query: 252 -----QYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVA 306
++ G Q F + AP +++ +D + + T++ E+KD++ + +A
Sbjct: 316 LKAQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSG-STPRFDTVVPESKDNLE--SVGIA 372
Query: 307 NDKLILSYIHHVKNVMHLHDLASGKHLYTFPL-DVGTIVGFSGKKKYSEIFYSFMSFLQP 365
++L SYIH K+ + DL GK L +G+ G SG+ + SF SF QP
Sbjct: 373 GNRLFASYIHDAKSQVLAFDL-DGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQP 431
Query: 366 TIIFHCNIPARVDPNSKLETSIFREIKVPDFDPSLFETKQVFYPSKDGTKIPMFILSRKG 425
+ +DP + +T+ + + + FDP+ F +QVFYPSKDGTK+PMFI+ RK
Sbjct: 432 ATVLA------LDPATA-KTTPWEPVHL-TFDPADFRVEQVFYPSKDGTKVPMFIVRRKD 483
Query: 426 AQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGR 485
A+ G P +LYGYGGF V+L P FS + ++ D G +A+ N+RGGGEYG+ WHD GR
Sbjct: 484 AK--GPLPTLLYGYGGFNVALTPWFSAGFMTWI-DSGGAFALANLRGGGEYGDAWHDAGR 540
Query: 486 LLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545
KQNVFDDF A E+LIA+G T LAI+GGSNGGLL A NQRPDLF AA VG
Sbjct: 541 RDKKQNVFDDFIAAGEWLIANGVTPRHGLAIEGGSNGGLLIGAVTNQRPDLFAAASPAVG 600
Query: 546 NPEISDCGRWLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFT 605
V+DML+F++FT
Sbjct: 601 -------------------------------------------------VMDMLRFDQFT 611
Query: 606 IGYFWESDYGSPANSSQFEYLLGYSPLHNIQGPDELKGKQYPATLLMTADHDDRVSPVHS 665
G +W DYG P + + L YSP HN++ G YPA L+ TAD DDRV P HS
Sbjct: 612 AGRYWVDDYGYPEKEADWRVLRRYSPYHNVR-----SGVDYPAILVTTADTDDRVVPGHS 666
Query: 666 LKFAATLQ-EKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQFPLTIPVIYF 715
K+ A LQ + PH LIRIET+AGHG GKP KQ T V F
Sbjct: 667 FKYTAALQTAAIGPKPH-----LIRIETRAGHGSGKPIDKQIEETADVQAF 712
Score = 107 bits (268), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 59/129 (45%), Positives = 76/129 (58%), Gaps = 16/129 (12%)
Query: 753 TDQKDDILIAE-----VLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLHNIQGP 807
T+Q+ D+ A V+DML+F++FT G +W DYG P + + L YSP HN++
Sbjct: 585 TNQRPDLFAAASPAVGVMDMLRFDQFTAGRYWVDDYGYPEKEADWRVLRRYSPYHNVR-- 642
Query: 808 NELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQ-EKLRDYPHQTNPLLIRIETKAGHG 866
G YPA L+ TAD DDRV P HS K+ A LQ + PH LIRIET+AGHG
Sbjct: 643 ---SGVDYPAILVTTADTDDRVVPGHSFKYTAALQTAAIGPKPH-----LIRIETRAGHG 694
Query: 867 GGKPTTKQL 875
GKP KQ+
Sbjct: 695 SGKPIDKQI 703
Score = 80.5 bits (197), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 44/101 (43%), Positives = 63/101 (62%), Gaps = 10/101 (9%)
Query: 898 TFMSFLQPTIIFHCNIPARVDPNSKLETSIFREIKVPDFDPSLFETKQVFYPSKDGTKIP 957
+F SF QP + +DP + +T+ + + + FDP+ F +QVFYPSKDGTK+P
Sbjct: 424 SFSSFTQPATVLA------LDPATA-KTTPWEPVHL-TFDPADFRVEQVFYPSKDGTKVP 475
Query: 958 MFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFL 998
MFI+ RK A+ G P +LYGYGGF V+L P FS + ++
Sbjct: 476 MFIVRRKDAK--GPLPTLLYGYGGFNVALTPWFSAGFMTWI 514
>pdb|3IUN|A Chain A, Appep_d622n Opened State
pdb|3IUQ|A Chain A, Appep_d622n+pp Closed State
pdb|3IUR|A Chain A, Appep_d266nx+h2h3 Opened State
Length = 693
Score = 318 bits (816), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 192/466 (41%), Positives = 253/466 (54%), Gaps = 73/466 (15%)
Query: 254 ITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLILS 313
+ N+G TN+DAPN RL+T+D N ++W+ LI E + VL + L
Sbjct: 287 VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPE-RQQVL--TVHSGSGYLFAE 343
Query: 314 YIHHVKNVMHLHDLASGKHLYTFPL-DVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCN 372
Y+ + D GK + L +G++ GF+GK +++ F ++ QP ++
Sbjct: 344 YMVDATARVEQFDY-EGKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLY--- 399
Query: 373 IPARVDPNSKLETSIFREIKVPDFDPSLFETKQVFYPSKDGTKIPMFILSRKGAQLDGNN 432
R +P S S++R P F P + ++Q FY SKDGT++P+ I RKG +LDG+N
Sbjct: 400 ---RFEPKSG-AISLYRASAAP-FKPEDYVSEQRFYQSKDGTRVPLIISYRKGLKLDGSN 454
Query: 433 PCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNV 492
P ILYGYGGF VSL P FSV+ +L D G+YA+ N+RGGGEYG+ WH G NKQNV
Sbjct: 455 PTILYGYGGFDVSLTPSFSVSVANWL-DLGGVYAVANLRGGGEYGQAWHLAGTQQNKQNV 513
Query: 493 FDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDC 552
FDDF AAEYL A GYT++ RLAI+GGSNGGLL A + QRPDL A+ VG
Sbjct: 514 FDDFIAAAEYLKAEGYTRTDRLAIRGGSNGGLLVGAVMTQRPDLMRVALPAVG------- 566
Query: 553 GRWLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWES 612
VLDML+++ FT G W
Sbjct: 567 ------------------------------------------VLDMLRYHTFTAGTGWAY 584
Query: 613 DYGSPANS-SQFEYLLGYSPLHNIQGPDELKGKQYPATLLMTADHDDRVSPVHSLKFAAT 671
DYG+ A+S + F+YL GYSPLHN++ G YP+T++ TADH+DRV P HS KFAAT
Sbjct: 585 DYGTSADSEAMFDYLKGYSPLHNVR-----PGVSYPSTMVTTADHNDRVVPAHSFKFAAT 639
Query: 672 LQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQFPLTIPVIYFYL 717
LQ PH P LIRIET AGHG G P K + + F L
Sbjct: 640 LQAD-NAGPH---PQLIRIETNAGHGAGTPVAKLIEQSADIYAFTL 681
Score = 155 bits (391), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 82/195 (42%), Positives = 116/195 (59%), Gaps = 5/195 (2%)
Query: 28 SKFKAMTKFEYPKARKNESLVDEYHGVKIPDPYGWMEDPDSEETKKFVDEENAISRPYLE 87
S + YP R+ E VD Y G + DPY W+ED S ET+ +V +NA+++ YL
Sbjct: 2 SHMSGKARLHYPVTRQGEQ-VDHYFGQAVADPYRWLEDDRSPETEAWVKAQNAVTQDYLA 60
Query: 88 DHPDRDKVKAELTKMWDYPKYSSPQRQGDHYFFFHNTGLQNHSVMYIQDSLDGE-ARVFL 146
P R +K +L W+Y K +P R+G +++FF N GLQN +V++ Q +G+ A VFL
Sbjct: 61 QIPYRAAIKEKLAASWNYAKEGAPFREGRYHYFFKNDGLQNQNVLWRQQ--EGKPAEVFL 118
Query: 147 DPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLHRLKFV 206
DPN LS DGT +L SFS DG+ LAY LS +GSDW +H DV + + L +KF
Sbjct: 119 DPNTLSPDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFS 178
Query: 207 SIAWTHDHKGVFYSN 221
I+W ++G FYS+
Sbjct: 179 GISWL-GNEGFFYSS 192
Score = 113 bits (283), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 61/111 (54%), Positives = 74/111 (66%), Gaps = 10/111 (9%)
Query: 764 VLDMLKFNKFTIGYFWESDYGSPANS-SQFEYLLGYSPLHNIQGPNELKGKQYPATLLMT 822
VLDML+++ FT G W DYG+ A+S + F+YL GYSPLHN++ G YP+T++ T
Sbjct: 567 VLDMLRYHTFTAGTGWAYDYGTSADSEAMFDYLKGYSPLHNVR-----PGVSYPSTMVTT 621
Query: 823 ADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTK 873
ADH+DRV P HS KFAATLQ PH P LIRIET AGHG G P K
Sbjct: 622 ADHNDRVVPAHSFKFAATLQAD-NAGPH---PQLIRIETNAGHGAGTPVAK 668
Score = 84.0 bits (206), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 47/105 (44%), Positives = 64/105 (60%), Gaps = 9/105 (8%)
Query: 899 FMSFLQPTIIFHCNIPARVDPNSKLETSIFREIKVPDFDPSLFETKQVFYPSKDGTKIPM 958
F ++ QP ++ R +P S S++R P F P + ++Q FY SKDGT++P+
Sbjct: 389 FENYAQPPTLY------RFEPKSG-AISLYRASAAP-FKPEDYVSEQRFYQSKDGTRVPL 440
Query: 959 FILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNG 1003
I RKG +LDG+NP ILYGYGGF VSL P FSV+ +L D G
Sbjct: 441 IISYRKGLKLDGSNPTILYGYGGFDVSLTPSFSVSVANWL-DLGG 484
Score = 33.9 bits (76), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 731 NKADGSE-NVRNQDQKLYYHYLGTDQKDDILI 761
+K DGSE + R K+Y+H LGT Q+DD L+
Sbjct: 194 DKPDGSELSARTDQHKVYFHRLGTAQEDDRLV 225
>pdb|3MUN|A Chain A, Appep_pepclose Closed State
pdb|3MUO|A Chain A, Appep_pepclose+pp Closed State
Length = 693
Score = 316 bits (810), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 192/466 (41%), Positives = 252/466 (54%), Gaps = 73/466 (15%)
Query: 254 ITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLILS 313
+ N+G TN+DAPN RL+T+D N ++W+ LI E + VL + L
Sbjct: 287 VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPE-RQQVL--TVHSGSGYLFAE 343
Query: 314 YIHHVKNVMHLHDLASGKHLYTFPL-DVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCN 372
Y+ + D GK + L +G++ GF+G +++ F ++ QP ++
Sbjct: 344 YMVDATARVEQFDY-EGKRVREVALPGLGSVSGFNGYWWDPALYFGFENYAQPPTLY--- 399
Query: 373 IPARVDPNSKLETSIFREIKVPDFDPSLFETKQVFYPSKDGTKIPMFILSRKGAQLDGNN 432
R +P S S++R P F P + ++Q FY SKDGT++P+ I RKG +LDG+N
Sbjct: 400 ---RFEPKSG-AISLYRASAAP-FKPEDYVSEQRFYQSKDGTRVPLIISYRKGLKLDGSN 454
Query: 433 PCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNV 492
P ILYGYGGF VSL P FSV+ +L D G+YA+ N+RGGGEYG+ WH G NKQNV
Sbjct: 455 PTILYGYGGFDVSLTPSFSVSVANWL-DLGGVYAVANLRGGGEYGQAWHLAGTQQNKQNV 513
Query: 493 FDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDC 552
FDDF AAEYL A GYT++ RLAI+GGSNGGLL A + QRPDL A+ VG
Sbjct: 514 FDDFIAAAEYLKAEGYTRTDRLAIRGGSNGGLLVGAVMTQRPDLMRVALPAVG------- 566
Query: 553 GRWLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWES 612
VLDML+++ FT G W
Sbjct: 567 ------------------------------------------VLDMLRYHTFTAGTGWAY 584
Query: 613 DYGSPANS-SQFEYLLGYSPLHNIQGPDELKGKQYPATLLMTADHDDRVSPVHSLKFAAT 671
DYG+ A+S + F+YL GYSPLHN++ G YP+T++ TADHDDRV P HS KFAAT
Sbjct: 585 DYGTSADSEAMFDYLKGYSPLHNVR-----PGVSYPSTMVTTADHDDRVVPAHSFKFAAT 639
Query: 672 LQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQFPLTIPVIYFYL 717
LQ PH P LIRIET AGHG G P K + + F L
Sbjct: 640 LQAD-NAGPH---PQLIRIETNAGHGAGTPVAKLIEQSADIYAFTL 681
Score = 150 bits (380), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 81/195 (41%), Positives = 114/195 (58%), Gaps = 5/195 (2%)
Query: 28 SKFKAMTKFEYPKARKNESLVDEYHGVKIPDPYGWMEDPDSEETKKFVDEENAISRPYLE 87
S + YP R+ E VD Y G + DPY W+ED S ET+ +V +NA+++ YL
Sbjct: 2 SHMSGKARLHYPVTRQGEQ-VDHYFGQAVADPYRWLEDDRSPETEAWVKAQNAVTQDYLA 60
Query: 88 DHPDRDKVKAELTKMWDYPKYSSPQRQGDHYFFFHNTGLQNHSVMYIQDSLDGE-ARVFL 146
P R +K +L W+Y K +P G +++FF N GLQN +V++ Q +G+ A VFL
Sbjct: 61 QIPYRAAIKEKLAASWNYAKEGAPFWWGRYHYFFKNDGLQNQNVLWRQQ--EGKPAEVFL 118
Query: 147 DPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLHRLKFV 206
DPN LS DGT +L SFS DG+ LAY LS +GSDW +H DV + + L +KF
Sbjct: 119 DPNTLSPDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFS 178
Query: 207 SIAWTHDHKGVFYSN 221
I+W ++G FYS+
Sbjct: 179 GISWL-GNEGFFYSS 192
Score = 115 bits (288), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/111 (55%), Positives = 74/111 (66%), Gaps = 10/111 (9%)
Query: 764 VLDMLKFNKFTIGYFWESDYGSPANS-SQFEYLLGYSPLHNIQGPNELKGKQYPATLLMT 822
VLDML+++ FT G W DYG+ A+S + F+YL GYSPLHN++ G YP+T++ T
Sbjct: 567 VLDMLRYHTFTAGTGWAYDYGTSADSEAMFDYLKGYSPLHNVR-----PGVSYPSTMVTT 621
Query: 823 ADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTK 873
ADHDDRV P HS KFAATLQ PH P LIRIET AGHG G P K
Sbjct: 622 ADHDDRVVPAHSFKFAATLQAD-NAGPH---PQLIRIETNAGHGAGTPVAK 668
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/105 (44%), Positives = 64/105 (60%), Gaps = 9/105 (8%)
Query: 899 FMSFLQPTIIFHCNIPARVDPNSKLETSIFREIKVPDFDPSLFETKQVFYPSKDGTKIPM 958
F ++ QP ++ R +P S S++R P F P + ++Q FY SKDGT++P+
Sbjct: 389 FENYAQPPTLY------RFEPKSG-AISLYRASAAP-FKPEDYVSEQRFYQSKDGTRVPL 440
Query: 959 FILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNG 1003
I RKG +LDG+NP ILYGYGGF VSL P FSV+ +L D G
Sbjct: 441 IISYRKGLKLDGSNPTILYGYGGFDVSLTPSFSVSVANWL-DLGG 484
Score = 33.9 bits (76), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 731 NKADGSE-NVRNQDQKLYYHYLGTDQKDDILI 761
+K DGSE + R K+Y+H LGT Q+DD L+
Sbjct: 194 DKPDGSELSARTDQHKVYFHRLGTAQEDDRLV 225
>pdb|3IUJ|A Chain A, Appep_wt2 Opened State
pdb|3IUL|A Chain A, Appep_wt1 Opened State
pdb|3IUM|A Chain A, Appep_wtx Opened State
Length = 693
Score = 313 bits (803), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 192/466 (41%), Positives = 249/466 (53%), Gaps = 73/466 (15%)
Query: 254 ITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLILS 313
+ N+G TN+DAPN RL+T+D N ++W+ LI E + VL + L
Sbjct: 287 VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPE-RQQVL--TVHSGSGYLFAE 343
Query: 314 YIHHVKNVMHLHDLASGKHLYTFPL-DVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCN 372
Y + D GK + L +G++ GF+GK +++ F ++ QP ++
Sbjct: 344 YXVDATARVEQFDY-EGKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLY--- 399
Query: 373 IPARVDPNSKLETSIFREIKVPDFDPSLFETKQVFYPSKDGTKIPMFILSRKGAQLDGNN 432
R +P S S++R P F P + ++Q FY SKDGT++P+ I RKG +LDG+N
Sbjct: 400 ---RFEPKSG-AISLYRASAAP-FKPEDYVSEQRFYQSKDGTRVPLIISYRKGLKLDGSN 454
Query: 433 PCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNV 492
P ILYGYGGF VSL P FSV+ +L D G+YA+ N+RGGGEYG+ WH G NKQNV
Sbjct: 455 PTILYGYGGFDVSLTPSFSVSVANWL-DLGGVYAVANLRGGGEYGQAWHLAGTQQNKQNV 513
Query: 493 FDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDC 552
FDDF AAEYL A GYT++ RLAI+GGSNGGLL A QRPDL A+ VG
Sbjct: 514 FDDFIAAAEYLKAEGYTRTDRLAIRGGSNGGLLVGAVXTQRPDLXRVALPAVG------- 566
Query: 553 GRWLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWES 612
VLD L+++ FT G W
Sbjct: 567 ------------------------------------------VLDXLRYHTFTAGTGWAY 584
Query: 613 DYGSPANS-SQFEYLLGYSPLHNIQGPDELKGKQYPATLLMTADHDDRVSPVHSLKFAAT 671
DYG+ A+S + F+YL GYSPLHN++ G YP+T + TADHDDRV P HS KFAAT
Sbjct: 585 DYGTSADSEAXFDYLKGYSPLHNVR-----PGVSYPSTXVTTADHDDRVVPAHSFKFAAT 639
Query: 672 LQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQFPLTIPVIYFYL 717
LQ PH P LIRIET AGHG G P K + + F L
Sbjct: 640 LQAD-NAGPH---PQLIRIETNAGHGAGTPVAKLIEQSADIYAFTL 681
Score = 155 bits (391), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 82/195 (42%), Positives = 116/195 (59%), Gaps = 5/195 (2%)
Query: 28 SKFKAMTKFEYPKARKNESLVDEYHGVKIPDPYGWMEDPDSEETKKFVDEENAISRPYLE 87
S + YP R+ E VD Y G + DPY W+ED S ET+ +V +NA+++ YL
Sbjct: 2 SHMSGKARLHYPVTRQGEQ-VDHYFGQAVADPYRWLEDDRSPETEAWVKAQNAVTQDYLA 60
Query: 88 DHPDRDKVKAELTKMWDYPKYSSPQRQGDHYFFFHNTGLQNHSVMYIQDSLDGE-ARVFL 146
P R +K +L W+Y K +P R+G +++FF N GLQN +V++ Q +G+ A VFL
Sbjct: 61 QIPYRAAIKEKLAASWNYAKEGAPFREGRYHYFFKNDGLQNQNVLWRQQ--EGKPAEVFL 118
Query: 147 DPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLHRLKFV 206
DPN LS DGT +L SFS DG+ LAY LS +GSDW +H DV + + L +KF
Sbjct: 119 DPNTLSPDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLXDVESKQPLETPLKDVKFS 178
Query: 207 SIAWTHDHKGVFYSN 221
I+W ++G FYS+
Sbjct: 179 GISWL-GNEGFFYSS 192
Score = 111 bits (277), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/111 (54%), Positives = 72/111 (64%), Gaps = 10/111 (9%)
Query: 764 VLDMLKFNKFTIGYFWESDYGSPANS-SQFEYLLGYSPLHNIQGPNELKGKQYPATLLMT 822
VLD L+++ FT G W DYG+ A+S + F+YL GYSPLHN++ G YP+T + T
Sbjct: 567 VLDXLRYHTFTAGTGWAYDYGTSADSEAXFDYLKGYSPLHNVR-----PGVSYPSTXVTT 621
Query: 823 ADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTK 873
ADHDDRV P HS KFAATLQ PH P LIRIET AGHG G P K
Sbjct: 622 ADHDDRVVPAHSFKFAATLQAD-NAGPH---PQLIRIETNAGHGAGTPVAK 668
Score = 84.3 bits (207), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/105 (44%), Positives = 64/105 (60%), Gaps = 9/105 (8%)
Query: 899 FMSFLQPTIIFHCNIPARVDPNSKLETSIFREIKVPDFDPSLFETKQVFYPSKDGTKIPM 958
F ++ QP ++ R +P S S++R P F P + ++Q FY SKDGT++P+
Sbjct: 389 FENYAQPPTLY------RFEPKSG-AISLYRASAAP-FKPEDYVSEQRFYQSKDGTRVPL 440
Query: 959 FILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNG 1003
I RKG +LDG+NP ILYGYGGF VSL P FSV+ +L D G
Sbjct: 441 IISYRKGLKLDGSNPTILYGYGGFDVSLTPSFSVSVANWL-DLGG 484
Score = 33.5 bits (75), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 731 NKADGSE-NVRNQDQKLYYHYLGTDQKDDILI 761
+K DGSE + R K+Y+H LGT Q+DD L+
Sbjct: 194 DKPDGSELSARTDQHKVYFHRLGTAQEDDRLV 225
>pdb|3IVM|A Chain A, Appep_wt+pp Closed State
Length = 693
Score = 313 bits (802), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 192/466 (41%), Positives = 249/466 (53%), Gaps = 73/466 (15%)
Query: 254 ITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLILS 313
+ N+G TN+DAPN RL+T+D N ++W+ LI E + VL + L
Sbjct: 287 VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPE-RQQVL--TVHSGSGYLFAE 343
Query: 314 YIHHVKNVMHLHDLASGKHLYTFPL-DVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCN 372
Y + D GK + L +G++ GF+GK +++ F ++ QP ++
Sbjct: 344 YXVDATARVEQFDY-EGKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLY--- 399
Query: 373 IPARVDPNSKLETSIFREIKVPDFDPSLFETKQVFYPSKDGTKIPMFILSRKGAQLDGNN 432
R +P S S++R P F P + ++Q FY SKDGT++P+ I RKG +LDG+N
Sbjct: 400 ---RFEPKSG-AISLYRASAAP-FKPEDYVSEQRFYQSKDGTRVPLIISYRKGLKLDGSN 454
Query: 433 PCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNV 492
P ILYGYGGF VSL P FSV+ +L D G+YA+ N+RGGGEYG+ WH G NKQNV
Sbjct: 455 PTILYGYGGFDVSLTPSFSVSVANWL-DLGGVYAVANLRGGGEYGQAWHLAGTQQNKQNV 513
Query: 493 FDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDC 552
FDDF AAEYL A GYT++ RLAI+GGSNGGLL A QRPDL A+ VG
Sbjct: 514 FDDFIAAAEYLKAEGYTRTDRLAIRGGSNGGLLVGAVXTQRPDLXRVALPAVG------- 566
Query: 553 GRWLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWES 612
VLD L+++ FT G W
Sbjct: 567 ------------------------------------------VLDXLRYHTFTAGTGWAY 584
Query: 613 DYGSPANS-SQFEYLLGYSPLHNIQGPDELKGKQYPATLLMTADHDDRVSPVHSLKFAAT 671
DYG+ A+S + F+YL GYSPLHN++ G YP+T + TADHDDRV P HS KFAAT
Sbjct: 585 DYGTSADSEAXFDYLKGYSPLHNVR-----PGVSYPSTXVTTADHDDRVVPAHSFKFAAT 639
Query: 672 LQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQFPLTIPVIYFYL 717
LQ PH P LIRIET AGHG G P K + + F L
Sbjct: 640 LQAD-NAGPH---PQLIRIETNAGHGAGTPVAKLIEQSADIYAFTL 681
Score = 154 bits (389), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 82/195 (42%), Positives = 116/195 (59%), Gaps = 5/195 (2%)
Query: 28 SKFKAMTKFEYPKARKNESLVDEYHGVKIPDPYGWMEDPDSEETKKFVDEENAISRPYLE 87
S + YP R+ E VD Y G + DPY W+ED S ET+ +V +NA+++ YL
Sbjct: 2 SHXSGKARLHYPVTRQGEQ-VDHYFGQAVADPYRWLEDDRSPETEAWVKAQNAVTQDYLA 60
Query: 88 DHPDRDKVKAELTKMWDYPKYSSPQRQGDHYFFFHNTGLQNHSVMYIQDSLDGE-ARVFL 146
P R +K +L W+Y K +P R+G +++FF N GLQN +V++ Q +G+ A VFL
Sbjct: 61 QIPYRAAIKEKLAASWNYAKEGAPFREGRYHYFFKNDGLQNQNVLWRQQ--EGKPAEVFL 118
Query: 147 DPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLHRLKFV 206
DPN LS DGT +L SFS DG+ LAY LS +GSDW +H DV + + L +KF
Sbjct: 119 DPNTLSPDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLXDVESKQPLETPLKDVKFS 178
Query: 207 SIAWTHDHKGVFYSN 221
I+W ++G FYS+
Sbjct: 179 GISWL-GNEGFFYSS 192
Score = 111 bits (277), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/111 (54%), Positives = 72/111 (64%), Gaps = 10/111 (9%)
Query: 764 VLDMLKFNKFTIGYFWESDYGSPANS-SQFEYLLGYSPLHNIQGPNELKGKQYPATLLMT 822
VLD L+++ FT G W DYG+ A+S + F+YL GYSPLHN++ G YP+T + T
Sbjct: 567 VLDXLRYHTFTAGTGWAYDYGTSADSEAXFDYLKGYSPLHNVR-----PGVSYPSTXVTT 621
Query: 823 ADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTK 873
ADHDDRV P HS KFAATLQ PH P LIRIET AGHG G P K
Sbjct: 622 ADHDDRVVPAHSFKFAATLQAD-NAGPH---PQLIRIETNAGHGAGTPVAK 668
Score = 84.3 bits (207), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/105 (44%), Positives = 64/105 (60%), Gaps = 9/105 (8%)
Query: 899 FMSFLQPTIIFHCNIPARVDPNSKLETSIFREIKVPDFDPSLFETKQVFYPSKDGTKIPM 958
F ++ QP ++ R +P S S++R P F P + ++Q FY SKDGT++P+
Sbjct: 389 FENYAQPPTLY------RFEPKSG-AISLYRASAAP-FKPEDYVSEQRFYQSKDGTRVPL 440
Query: 959 FILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNG 1003
I RKG +LDG+NP ILYGYGGF VSL P FSV+ +L D G
Sbjct: 441 IISYRKGLKLDGSNPTILYGYGGFDVSLTPSFSVSVANWL-DLGG 484
Score = 33.5 bits (75), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 731 NKADGSE-NVRNQDQKLYYHYLGTDQKDDILI 761
+K DGSE + R K+Y+H LGT Q+DD L+
Sbjct: 194 DKPDGSELSARTDQHKVYFHRLGTAQEDDRLV 225
>pdb|2BKL|A Chain A, Structural And Mechanistic Analysis Of Two Prolyl
Endopeptidases: Role Of Inter-Domain Dynamics In
Catalysis And Specificity
pdb|2BKL|B Chain B, Structural And Mechanistic Analysis Of Two Prolyl
Endopeptidases: Role Of Inter-Domain Dynamics In
Catalysis And Specificity
Length = 695
Score = 277 bits (708), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 163/457 (35%), Positives = 235/457 (51%), Gaps = 70/457 (15%)
Query: 260 QFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLILSYIHHVK 319
+F T++ AP R+ +D A ++WK ++ E+ L + + L L Y+
Sbjct: 283 RFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASL-LSVSIVGGHLSLEYLKDAT 341
Query: 320 NVMHLHDLASGKHLYTFPL-DVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNIPARVD 378
+ + + L GK + T L VG G + + +Y F SF P I+ ++
Sbjct: 342 SEVRVATL-KGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSV----- 395
Query: 379 PNSKLETSIFREIKVPDFDPSLFETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYG 438
S ++ ++ ++ VP +P ++ +QVFY SKDGTK+PMF++ RK + DGN P +LYG
Sbjct: 396 --STGKSELWAKVDVP-MNPEQYQVEQVFYASKDGTKVPMFVVHRKDLKRDGNAPTLLYG 452
Query: 439 YGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQC 498
YGGF V+++ F + + +L D G+YA+ N+RGGGEYG+ WHD GRL KQNVFDDF
Sbjct: 453 YGGFNVNMEANFRSSILPWL-DAGGVYAVANLRGGGEYGKAWHDAGRLDKKQNVFDDFHA 511
Query: 499 AAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGRWLIV 558
AAEYL+ YTQ RLAI GGSNGGLL A + QRP+L+GA + V
Sbjct: 512 AAEYLVQQKYTQPKRLAIYGGSNGGLLVGAAMTQRPELYGAVVCAV-------------- 557
Query: 559 HTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPA 618
PL LDM++++ F G W +YG+
Sbjct: 558 ----------------------------PL-------LDMVRYHLFGSGRTWIPEYGTAE 582
Query: 619 NSSQFEYLLGYSPLHNIQGPDELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRD 678
F+ L YSP H+++ PD +YPA L+M ADHDDRV P+H+ KF A +Q
Sbjct: 583 KPEDFKTLHAYSPYHHVR-PD----VRYPALLMMAADHDDRVDPMHARKFVAAVQNS--- 634
Query: 679 YPHQTNPLLIRIETKAGHGGGKPTTKQFPLTIPVIYF 715
P L+RIE AGHGG K ++ + F
Sbjct: 635 -PGNPATALLRIEANAGHGGADQVAKAIESSVDLYSF 670
Score = 117 bits (294), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 101/185 (54%), Gaps = 2/185 (1%)
Query: 36 FEYPKARKNESLVDEYHGVKIPDPYGWMEDPDSEETKKFVDEENAISRPYLEDHPDRDKV 95
YP R E +VD HGV++ DPY W+ED + E + ++ +NA +R L P R+ +
Sbjct: 1 MSYPATRA-EQVVDTLHGVQVADPYRWLEDEKAPEVQTWMTAQNAHAREALAKFPGREAL 59
Query: 96 KAELTKMWDYPKYSSPQRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDG 155
A +++ S+P R+ +F+ + +++Y + G+ +V LDPN S DG
Sbjct: 60 AARFKELFYTDSVSTPSRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDG 119
Query: 156 TVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGK-EYPEVLHRLKFVSIAWTHDH 214
TVSLG+++ S DGK +A+ + +D +H DV +G+ +V+ K+ + WT D
Sbjct: 120 TVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDS 179
Query: 215 KGVFY 219
KG +Y
Sbjct: 180 KGFYY 184
Score = 84.0 bits (206), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 64/117 (54%), Gaps = 9/117 (7%)
Query: 759 ILIAEVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLHNIQGPNELKGKQYPAT 818
+ +LDM++++ F G W +YG+ F+ L YSP H+++ P+ +YPA
Sbjct: 554 VCAVPLLDMVRYHLFGSGRTWIPEYGTAEKPEDFKTLHAYSPYHHVR-PD----VRYPAL 608
Query: 819 LLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQL 875
L+M ADHDDRV P+H+ KF A +Q P L+RIE AGHGG K +
Sbjct: 609 LMMAADHDDRVDPMHARKFVAAVQNS----PGNPATALLRIEANAGHGGADQVAKAI 661
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 81/163 (49%), Gaps = 43/163 (26%)
Query: 871 TTKQLCVRYMMGGHFTVEFIRSVTT-----------IRT--------------------- 898
++ L ++GGH ++E+++ T+ +RT
Sbjct: 318 SSASLLSVSIVGGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDA 377
Query: 899 ---FMSFLQPTIIFHCNIPARVDPNSKLETSIFREIKVPDFDPSLFETKQVFYPSKDGTK 955
F SF P I+ ++ S ++ ++ ++ VP +P ++ +QVFY SKDGTK
Sbjct: 378 YYVFTSFTTPRQIYKTSV-------STGKSELWAKVDVP-MNPEQYQVEQVFYASKDGTK 429
Query: 956 IPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFL 998
+PMF++ RK + DGN P +LYGYGGF V+++ F + + +L
Sbjct: 430 VPMFVVHRKDLKRDGNAPTLLYGYGGFNVNMEANFRSSILPWL 472
>pdb|4HVT|A Chain A, Structure Of A Post-Proline Cleaving Enzyme From
Rickettsia Typhi
Length = 711
Score = 147 bits (370), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 94/305 (30%), Positives = 135/305 (44%), Gaps = 62/305 (20%)
Query: 396 FDPSLFETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKI 455
FD + +Q S DG KIP F++ +KG + DG NP +L YGGF V P FS K
Sbjct: 442 FDSENYVLEQKEATSFDGVKIPYFLVYKKGIKFDGKNPTLLEAYGGFQVINAPYFSRIKN 501
Query: 456 VFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYTQSSRLA 515
G+ + NIRGGGE+G WH + + +Q F+DF +E LI T L
Sbjct: 502 EVWVKNAGVSVLANIRGGGEFGPEWHKSAQGIKRQTAFNDFFAVSEELIKQNITSPEYLG 561
Query: 516 IQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGRWLIVHTMKDCKNNMFHFCDLD 575
I+GGSNGGLL + + QRP+LFGA +V
Sbjct: 562 IKGGSNGGLLVSVAMTQRPELFGAVACEV------------------------------- 590
Query: 576 TIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLHNI 635
+LDM+++ +F G+ W ++YG P + ++ Y+PL N+
Sbjct: 591 ------------------PILDMIRYKEFGAGHSWVTEYGDPEIPNDLLHIKKYAPLENL 632
Query: 636 QGPDELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETK-A 694
++YP L+ + D RV P H F L + P+ L E+K +
Sbjct: 633 SLT-----QKYPTVLITDSVLDQRVHPWHGRIFEYVLAQN----PNTKTYFL---ESKDS 680
Query: 695 GHGGG 699
GHG G
Sbjct: 681 GHGSG 685
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 33/59 (55%)
Query: 936 FDPSLFETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTK 994
FD + +Q S DG KIP F++ +KG + DG NP +L YGGF V P FS K
Sbjct: 442 FDSENYVLEQKEATSFDGVKIPYFLVYKKGIKFDGKNPTLLEAYGGFQVINAPYFSRIK 500
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 13/106 (12%)
Query: 764 VLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLHNIQGPNELKGKQYPATLLMTA 823
+LDM+++ +F G+ W ++YG P + ++ Y+PL N+ ++YP L+ +
Sbjct: 592 ILDMIRYKEFGAGHSWVTEYGDPEIPNDLLHIKKYAPLENLSLT-----QKYPTVLITDS 646
Query: 824 DHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETK-AGHGGG 868
D RV P H F L + P+ L E+K +GHG G
Sbjct: 647 VLDQRVHPWHGRIFEYVLAQN----PNTKTYFL---ESKDSGHGSG 685
>pdb|2XE4|A Chain A, Structure Of Oligopeptidase B From Leishmania Major
Length = 751
Score = 146 bits (368), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 98/326 (30%), Positives = 156/326 (47%), Gaps = 60/326 (18%)
Query: 377 VDPNSKLETSI-FREIKVPDFDPSLFETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCI 435
V P T++ RE+ FD + ++ ++ F + D TKIP+ ++ K + PC+
Sbjct: 454 VSPQDHSRTAVKVREVG-GGFDAANYKVERRFATAPDQTKIPLSVVYHKDLDMSQPQPCM 512
Query: 436 LYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHD-GGRLLNKQNVFD 494
LYGYG + +S+ P FS+ + + D I+AI +IRGG E G W++ G + L K+N F
Sbjct: 513 LYGYGSYGLSMDPQFSIQHLPYC-DRGMIFAIAHIRGGSELGRAWYEIGAKYLTKRNTFS 571
Query: 495 DFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGR 554
DF AAE+L+ + T S+LA +G S GGLL A +N RPDLF A+ V ++
Sbjct: 572 DFIAAAEFLVNAKLTTPSQLACEGRSAGGLLMGAVLNMRPDLFKVALAGVPFVDV----- 626
Query: 555 WLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDY 614
M CD +PLT WE ++
Sbjct: 627 -------------MTTMCD----------PSIPLTTGE-----------------WE-EW 645
Query: 615 GSPANSSQFEYLLGYSPLHNIQGPDELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQE 674
G+P ++Y+L YSP+ N+ + ++YP ++ HD RV+ K+ +
Sbjct: 646 GNPNEYKYYDYMLSYSPMDNV------RAQEYPNIMVQCGLHDPRVAYWEPAKWVS---- 695
Query: 675 KLRDYPHQTNPLLIRIETKAGHGGGK 700
KLR+ N +L+ I+ ++GH K
Sbjct: 696 KLRECKTDNNEILLNIDMESGHFSAK 721
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 15/121 (12%)
Query: 885 FTVEFIRSVTTIRTFMSFLQPTIIFHCNIPARVDPNSKLETS----IFREIKVPD----F 936
FTV + S + + +PT F + PN+ + S +KV + F
Sbjct: 421 FTVHLVES-----QMLEYEEPT--FRMEYSSLATPNTWFDVSPQDHSRTAVKVREVGGGF 473
Query: 937 DPSLFETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIV 996
D + ++ ++ F + D TKIP+ ++ K + PC+LYGYG + +S+ P FS+ +
Sbjct: 474 DAANYKVERRFATAPDQTKIPLSVVYHKDLDMSQPQPCMLYGYGSYGLSMDPQFSIQHLP 533
Query: 997 F 997
+
Sbjct: 534 Y 534
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 11/91 (12%)
Query: 779 WESDYGSPANSSQFEYLLGYSPLHNIQGPNELKGKQYPATLLMTADHDDRVSPVHSLKFA 838
WE ++G+P ++Y+L YSP+ N+ + ++YP ++ HD RV+ K+
Sbjct: 642 WE-EWGNPNEYKYYDYMLSYSPMDNV------RAQEYPNIMVQCGLHDPRVAYWEPAKWV 694
Query: 839 ATLQEKLRDYPHQTNPLLIRIETKAGHGGGK 869
+ KLR+ N +L+ I+ ++GH K
Sbjct: 695 S----KLRECKTDNNEILLNIDMESGHFSAK 721
>pdb|3O4J|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4J|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4J|C Chain C, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4J|D Chain D, Structure And Catalysis Of Acylaminoacyl Peptidase
Length = 582
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 68/166 (40%), Gaps = 43/166 (25%)
Query: 395 DFDPSLFETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGG-----------FA 443
D S+ ++ V+ S DG+++P ++L A G P ++ +GG FA
Sbjct: 325 DLRRSIAGSRLVWVESFDGSRVPTYVLESGRAPTPG--PTVVLVHGGPFAEDSDSWDTFA 382
Query: 444 VSL-QPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWH-------DGGRLLNKQNVFDD 495
SL GF V +PN RG YGE W GG L +D
Sbjct: 383 ASLAAAGFHVV-------------MPNYRGSTGYGEEWRLKIIGDPCGGEL-------ED 422
Query: 496 FQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAI 541
AA + SG +S L I G S GG +T + +P LF A +
Sbjct: 423 VSAAARWARESGL--ASELYIMGYSYGGYMTLCALTMKPGLFKAGV 466
>pdb|3O4H|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4H|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4H|C Chain C, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4H|D Chain D, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4I|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4I|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
Length = 582
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 68/166 (40%), Gaps = 43/166 (25%)
Query: 395 DFDPSLFETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGG-----------FA 443
D S+ ++ V+ S DG+++P ++L A G P ++ +GG FA
Sbjct: 325 DLRRSIAGSRLVWVESFDGSRVPTYVLESGRAPTPG--PTVVLVHGGPFAEDSDSWDTFA 382
Query: 444 VSL-QPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWH-------DGGRLLNKQNVFDD 495
SL GF V +PN RG YGE W GG L +D
Sbjct: 383 ASLAAAGFHVV-------------MPNYRGSTGYGEEWRLKIIGDPCGGEL-------ED 422
Query: 496 FQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAI 541
AA + SG +S L I G S GG +T + +P LF A +
Sbjct: 423 VSAAARWARESGL--ASELYIMGYSYGGYMTLCALTMKPGLFKAGV 466
>pdb|1VE6|A Chain A, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
Aeropyrum Pernix K1
pdb|1VE6|B Chain B, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
Aeropyrum Pernix K1
pdb|1VE7|A Chain A, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
AEROPYRUM Pernix K1 In Complex With P-Nitrophenyl
Phosphate
pdb|1VE7|B Chain B, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
AEROPYRUM Pernix K1 In Complex With P-Nitrophenyl
Phosphate
pdb|2HU5|A Chain A, Binding Of Inhibitors By Acylaminoacyl-Peptidase
pdb|2HU5|B Chain B, Binding Of Inhibitors By Acylaminoacyl-Peptidase
pdb|2HU7|A Chain A, Binding Of Inhibitors By Acylaminoacyl Peptidase
pdb|2HU7|B Chain B, Binding Of Inhibitors By Acylaminoacyl Peptidase
pdb|3O4G|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4G|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4G|C Chain C, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4G|D Chain D, Structure And Catalysis Of Acylaminoacyl Peptidase
Length = 582
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 68/166 (40%), Gaps = 43/166 (25%)
Query: 395 DFDPSLFETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGG-----------FA 443
D S+ ++ V+ S DG+++P ++L A G P ++ +GG FA
Sbjct: 325 DLRRSIAGSRLVWVESFDGSRVPTYVLESGRAPTPG--PTVVLVHGGPFAEDSDSWDTFA 382
Query: 444 VSL-QPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWH-------DGGRLLNKQNVFDD 495
SL GF V +PN RG YGE W GG L +D
Sbjct: 383 ASLAAAGFHVV-------------MPNYRGSTGYGEEWRLKIIGDPCGGEL-------ED 422
Query: 496 FQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAI 541
AA + SG +S L I G S GG +T + +P LF A +
Sbjct: 423 VSAAARWARESGL--ASELYIMGYSYGGYMTLCALTMKPGLFKAGV 466
>pdb|2QZP|A Chain A, Crystal Structure Of Mutation Of An Acylptide
HydrolaseESTERASE FROM AEROPYRUM PERNIX K1
pdb|2QZP|B Chain B, Crystal Structure Of Mutation Of An Acylptide
HydrolaseESTERASE FROM AEROPYRUM PERNIX K1
Length = 562
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 68/167 (40%), Gaps = 43/167 (25%)
Query: 395 DFDPSLFETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGG-----------FA 443
D S+ ++ V+ S DG+++P ++L A G P ++ +GG FA
Sbjct: 305 DLRRSIAGSRLVWVESFDGSRVPTYVLESGRAPTPG--PTVVLVHGGPFAEDSDSWDTFA 362
Query: 444 VSL-QPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWH-------DGGRLLNKQNVFDD 495
SL GF V +PN RG YGE W GG L +D
Sbjct: 363 ASLAAAGFHVV-------------MPNYRGSTGYGEEWRLKIIGDPCGGEL-------ED 402
Query: 496 FQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIV 542
AA + SG +S L I G S GG +T + +P LF A +
Sbjct: 403 VSAAARWARESGL--ASELYIMGYSYGGYMTLCALTMKPGLFKAGVA 447
>pdb|2HU8|A Chain A, Binding Of Inhibitors By Acylaminoacyl Peptidase
pdb|2HU8|B Chain B, Binding Of Inhibitors By Acylaminoacyl Peptidase
Length = 582
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 68/166 (40%), Gaps = 43/166 (25%)
Query: 395 DFDPSLFETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGG-----------FA 443
D S+ ++ V+ S DG+++P ++L A G P ++ +GG FA
Sbjct: 325 DLRRSIAGSRLVWVESFDGSRVPTYVLESGRAPTPG--PTVVLVHGGPFAEDSDSWDTFA 382
Query: 444 VSL-QPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWH-------DGGRLLNKQNVFDD 495
SL GF V +PN RG YGE W GG L +D
Sbjct: 383 ASLAAAGFHVV-------------MPNYRGSTGYGEEWRLKIIGDPCGGEL-------ED 422
Query: 496 FQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAI 541
AA + SG +S L I G + GG +T + +P LF A +
Sbjct: 423 VSAAARWARESGL--ASELYIMGYAYGGYMTLCALTMKPGLFKAGV 466
>pdb|2QR5|A Chain A, Aeropyrum Pernix Acylaminoacyl Peptidase, H367a Mutant
pdb|2QR5|B Chain B, Aeropyrum Pernix Acylaminoacyl Peptidase, H367a Mutant
Length = 582
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 67/166 (40%), Gaps = 43/166 (25%)
Query: 395 DFDPSLFETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGG-----------FA 443
D S+ ++ V+ S DG+++P ++L A G P ++ GG FA
Sbjct: 325 DLRRSIAGSRLVWVESFDGSRVPTYVLESGRAPTPG--PTVVLVAGGPFAEDSDSWDTFA 382
Query: 444 VSLQP-GFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWH-------DGGRLLNKQNVFDD 495
SL GF V +PN RG YGE W GG L +D
Sbjct: 383 ASLAAAGFHVV-------------MPNYRGSTGYGEEWRLKIIGDPCGGEL-------ED 422
Query: 496 FQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAI 541
AA + SG +S L I G S GG +T + +P LF A +
Sbjct: 423 VSAAARWARESGL--ASELYIMGYSYGGYMTLCALTMKPGLFKAGV 466
>pdb|3DOH|A Chain A, Crystal Structure Of A Thermostable Esterase
pdb|3DOH|B Chain B, Crystal Structure Of A Thermostable Esterase
pdb|3DOI|A Chain A, Crystal Structure Of A Thermostable Esterase Complex With
Paraoxon
pdb|3DOI|B Chain B, Crystal Structure Of A Thermostable Esterase Complex With
Paraoxon
Length = 380
Score = 36.2 bits (82), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 40/195 (20%), Positives = 71/195 (36%), Gaps = 16/195 (8%)
Query: 415 KIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGG 474
K P+ + + +N + G G V QP + V F+ P
Sbjct: 173 KYPLVVFLHGAGERGTDNYLQVAGNRGAVVWAQPRYQVVHPCFV-------LAPQCPPNS 225
Query: 475 EYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRP 534
+ + D N + L+ +R+ I G S GG T I + P
Sbjct: 226 SWSTLFTDRENPFNPEKPLLAVIKIIRKLLDEYNIDENRIYITGLSMGGYGTWTAIMEFP 285
Query: 535 DLFGAAIVQVGNPEISDCGRWLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHK 594
+LF AAI G ++S R +KD +FH D +P +E L + + +
Sbjct: 286 ELFAAAIPICGGGDVSKVER------IKDIPIWVFHAEDDPVVP---VENSRVLVKKLAE 336
Query: 595 VLDMLKFNKFTIGYF 609
+ +++ ++ G+
Sbjct: 337 IGGKVRYTEYEKGFM 351
>pdb|1R9M|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv At 2.1
Ang. Resolution.
pdb|1R9M|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv At 2.1
Ang. Resolution.
pdb|1R9M|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv At 2.1
Ang. Resolution.
pdb|1R9M|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv At 2.1
Ang. Resolution
Length = 733
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 70/177 (39%), Gaps = 27/177 (15%)
Query: 379 PNSKLETSIFREIKVPDFDPSLFETKQVFYPSKDGTK-IPMFILSRKGAQLDGNNPCILY 437
P+ KL+ I E K F + + P D +K P+ + G PC
Sbjct: 477 PSKKLDFIILNETK--------FWYQMILPPHFDKSKKYPLLLDVYAG-------PCSQK 521
Query: 438 GYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGER-WHDGGRLLNKQNVFDDF 496
F ++ + T+ + + F+G RG G G++ H R L V D
Sbjct: 522 ADTVFRLNWATYLASTENIIVASFDG-------RGSGYQGDKIMHAINRRLGTFEVEDQI 574
Query: 497 QCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLF--GAAIVQVGNPEISD 551
+ A ++ G+ + R+AI G S GG +T+ + +F G A+ V E D
Sbjct: 575 EAARQFS-KMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYD 630
>pdb|2QT9|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A 4-Aryl
Cyclohexylalanine Inhibitor
pdb|2QT9|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A 4-Aryl
Cyclohexylalanine Inhibitor
pdb|2QTB|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A 4-Aryl
Cyclohexylalanine Inhibitor
pdb|2QTB|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A 4-Aryl
Cyclohexylalanine Inhibitor
Length = 766
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 70/177 (39%), Gaps = 27/177 (15%)
Query: 379 PNSKLETSIFREIKVPDFDPSLFETKQVFYPSKDGTK-IPMFILSRKGAQLDGNNPCILY 437
P+ KL+ I E K F + + P D +K P+ + G PC
Sbjct: 510 PSKKLDFIILNETK--------FWYQMILPPHFDKSKKYPLLLDVYAG-------PCSQK 554
Query: 438 GYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGER-WHDGGRLLNKQNVFDDF 496
F ++ + T+ + + F+G RG G G++ H R L V D
Sbjct: 555 ADTVFRLNWATYLASTENIIVASFDG-------RGSGYQGDKIMHAINRRLGTFEVEDQI 607
Query: 497 QCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLF--GAAIVQVGNPEISD 551
+ A ++ G+ + R+AI G S GG +T+ + +F G A+ V E D
Sbjct: 608 EAARQFS-KMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYD 663
>pdb|2ONC|A Chain A, Crystal Structure Of Human Dpp-4
pdb|2ONC|B Chain B, Crystal Structure Of Human Dpp-4
pdb|2ONC|C Chain C, Crystal Structure Of Human Dpp-4
pdb|2ONC|D Chain D, Crystal Structure Of Human Dpp-4
Length = 731
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 70/177 (39%), Gaps = 27/177 (15%)
Query: 379 PNSKLETSIFREIKVPDFDPSLFETKQVFYPSKDGTK-IPMFILSRKGAQLDGNNPCILY 437
P+ KL+ I E K F + + P D +K P+ + G PC
Sbjct: 475 PSKKLDFIILNETK--------FWYQMILPPHFDKSKKYPLLLDVYAG-------PCSQK 519
Query: 438 GYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGER-WHDGGRLLNKQNVFDDF 496
F ++ + T+ + + F+G RG G G++ H R L V D
Sbjct: 520 ADTVFRLNWATYLASTENIIVASFDG-------RGSGYQGDKIMHAINRRLGTFEVEDQI 572
Query: 497 QCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLF--GAAIVQVGNPEISD 551
+ A ++ G+ + R+AI G S GG +T+ + +F G A+ V E D
Sbjct: 573 EAARQFS-KMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYD 628
>pdb|4A5S|A Chain A, Crystal Structure Of Human Dpp4 In Complex With A Noval
Heterocyclic Dpp4 Inhibitor
pdb|4A5S|B Chain B, Crystal Structure Of Human Dpp4 In Complex With A Noval
Heterocyclic Dpp4 Inhibitor
Length = 740
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 70/177 (39%), Gaps = 27/177 (15%)
Query: 379 PNSKLETSIFREIKVPDFDPSLFETKQVFYPSKDGTK-IPMFILSRKGAQLDGNNPCILY 437
P+ KL+ I E K F + + P D +K P+ + G PC
Sbjct: 472 PSKKLDFIILNETK--------FWYQMILPPHFDKSKKYPLLLDVYAG-------PCSQK 516
Query: 438 GYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGER-WHDGGRLLNKQNVFDDF 496
F ++ + T+ + + F+G RG G G++ H R L V D
Sbjct: 517 ADTVFRLNWATYLASTENIIVASFDG-------RGSGYQGDKIMHAINRRLGTFEVEDQI 569
Query: 497 QCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLF--GAAIVQVGNPEISD 551
+ A ++ G+ + R+AI G S GG +T+ + +F G A+ V E D
Sbjct: 570 EAARQFS-KMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYD 625
>pdb|1J2E|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv
pdb|1J2E|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv
pdb|1WCY|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (dppiv)
Complex With Diprotin A
pdb|1WCY|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (dppiv)
Complex With Diprotin A
pdb|3VJM|A Chain A, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With A Prolylthiazolidine Inhibitor #1
pdb|3VJM|B Chain B, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With A Prolylthiazolidine Inhibitor #1
pdb|3VJK|A Chain A, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With Mp-513
pdb|3VJK|B Chain B, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With Mp-513
pdb|3VJL|A Chain A, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With A Prolylthiazolidine Inhibitor #2
pdb|3VJL|B Chain B, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With A Prolylthiazolidine Inhibitor #2
Length = 740
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 70/177 (39%), Gaps = 27/177 (15%)
Query: 379 PNSKLETSIFREIKVPDFDPSLFETKQVFYPSKDGTK-IPMFILSRKGAQLDGNNPCILY 437
P+ KL+ I E K F + + P D +K P+ + G PC
Sbjct: 478 PSKKLDFIILNETK--------FWYQMILPPHFDKSKKYPLLLDVYAG-------PCSQK 522
Query: 438 GYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGER-WHDGGRLLNKQNVFDDF 496
F ++ + T+ + + F+G RG G G++ H R L V D
Sbjct: 523 ADTVFRLNWATYLASTENIIVASFDG-------RGSGYQGDKIMHAINRRLGTFEVEDQI 575
Query: 497 QCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLF--GAAIVQVGNPEISD 551
+ A ++ G+ + R+AI G S GG +T+ + +F G A+ V E D
Sbjct: 576 EAARQFS-KMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYD 631
>pdb|3NOX|A Chain A, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-(6-
(Aminomethyl)-5-(2,4-Dichlorophenyl)-7-Methylimidazo[1,
2-A]pyrimidin- 2-Yl)(Morpholino)methanone
pdb|3NOX|B Chain B, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-(6-
(Aminomethyl)-5-(2,4-Dichlorophenyl)-7-Methylimidazo[1,
2-A]pyrimidin- 2-Yl)(Morpholino)methanone
pdb|3SWW|A Chain A, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-3-
(Aminomethyl)-4-(2,
4-Dichlorophenyl)-6-(2-Methoxyphenyl)- 2-Methyl-
5h-Pyrrolo[3,4-B]pyridin-7(6h)-One
pdb|3SWW|B Chain B, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-3-
(Aminomethyl)-4-(2,
4-Dichlorophenyl)-6-(2-Methoxyphenyl)- 2-Methyl-
5h-Pyrrolo[3,4-B]pyridin-7(6h)-One
pdb|3SX4|A Chain A, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-3-
(Aminomethyl)-4-(2,
4-Dichlorophenyl)-6-(2-Methoxyphenyl)- 2-Methyl-
5h-Pyrrolo[3,4-B]pyridin-7(6h)-One
pdb|3SX4|B Chain B, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-3-
(Aminomethyl)-4-(2,
4-Dichlorophenyl)-6-(2-Methoxyphenyl)- 2-Methyl-
5h-Pyrrolo[3,4-B]pyridin-7(6h)-One
pdb|3Q0T|A Chain A, Crystal Structure Of Human Dpp-iv In Complex Withsa-(+)-
Methyl2-(3-
(aminomethyl)-4-(2,4-dichlorophenyl)-2-methyl-
7-oxo-5h-pyrrolo[3,4- B]pyridin-6(7h)-yl)acetate
pdb|3Q0T|B Chain B, Crystal Structure Of Human Dpp-iv In Complex Withsa-(+)-
Methyl2-(3-
(aminomethyl)-4-(2,4-dichlorophenyl)-2-methyl-
7-oxo-5h-pyrrolo[3,4- B]pyridin-6(7h)-yl)acetate
Length = 753
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 70/177 (39%), Gaps = 27/177 (15%)
Query: 379 PNSKLETSIFREIKVPDFDPSLFETKQVFYPSKDGTK-IPMFILSRKGAQLDGNNPCILY 437
P+ KL+ I E K F + + P D +K P+ + G PC
Sbjct: 474 PSKKLDFIILNETK--------FWYQMILPPHFDKSKKYPLLLDVYAG-------PCSQK 518
Query: 438 GYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGER-WHDGGRLLNKQNVFDDF 496
F ++ + T+ + + F+G RG G G++ H R L V D
Sbjct: 519 ADTVFRLNWATYLASTENIIVASFDG-------RGSGYQGDKIMHAINRRLGTFEVEDQI 571
Query: 497 QCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLF--GAAIVQVGNPEISD 551
+ A ++ G+ + R+AI G S GG +T+ + +F G A+ V E D
Sbjct: 572 EAARQFS-KMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYD 627
>pdb|2JID|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With 1-(3,4-
Dimethoxy-Phenyl)-3-M-Tolyl-Piperidine-4-Ylamine
pdb|2JID|B Chain B, Human Dipeptidyl Peptidase Iv In Complex With 1-(3,4-
Dimethoxy-Phenyl)-3-M-Tolyl-Piperidine-4-Ylamine
Length = 736
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 70/177 (39%), Gaps = 27/177 (15%)
Query: 379 PNSKLETSIFREIKVPDFDPSLFETKQVFYPSKDGTK-IPMFILSRKGAQLDGNNPCILY 437
P+ KL+ I E K F + + P D +K P+ + G PC
Sbjct: 480 PSKKLDFIILNETK--------FWYQMILPPHFDKSKKYPLLLDVYAG-------PCSQK 524
Query: 438 GYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGER-WHDGGRLLNKQNVFDDF 496
F ++ + T+ + + F+G RG G G++ H R L V D
Sbjct: 525 ADTVFRLNWATYLASTENIIVASFDG-------RGSGYQGDKIMHAINRRLGTFEVEDQI 577
Query: 497 QCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLF--GAAIVQVGNPEISD 551
+ A ++ G+ + R+AI G S GG +T+ + +F G A+ V E D
Sbjct: 578 EAARQFS-KMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYD 633
>pdb|1R9N|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Decapeptide (Tnpy) At 2.3 Ang. Resolution
pdb|1R9N|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Decapeptide (Tnpy) At 2.3 Ang. Resolution
pdb|1R9N|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Decapeptide (Tnpy) At 2.3 Ang. Resolution
pdb|1R9N|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Decapeptide (Tnpy) At 2.3 Ang. Resolution
Length = 739
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 70/177 (39%), Gaps = 27/177 (15%)
Query: 379 PNSKLETSIFREIKVPDFDPSLFETKQVFYPSKDGTK-IPMFILSRKGAQLDGNNPCILY 437
P+ KL+ I E K F + + P D +K P+ + G PC
Sbjct: 483 PSKKLDFIILNETK--------FWYQMILPPHFDKSKKYPLLLDVYAG-------PCSQK 527
Query: 438 GYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGER-WHDGGRLLNKQNVFDDF 496
F ++ + T+ + + F+G RG G G++ H R L V D
Sbjct: 528 ADTVFRLNWATYLASTENIIVASFDG-------RGSGYQGDKIMHAINRRLGTFEVEDQI 580
Query: 497 QCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLF--GAAIVQVGNPEISD 551
+ A ++ G+ + R+AI G S GG +T+ + +F G A+ V E D
Sbjct: 581 EAARQFS-KMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYD 636
>pdb|1X70|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With A Beta Amino
Acid Inhibitor
pdb|1X70|B Chain B, Human Dipeptidyl Peptidase Iv In Complex With A Beta Amino
Acid Inhibitor
pdb|2FJP|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH AN
INHIBITOR
pdb|2FJP|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH AN
INHIBITOR
pdb|2HHA|A Chain A, The Structure Of Dpp4 In Complex With An Oxadiazole
Inhibitor
pdb|2HHA|B Chain B, The Structure Of Dpp4 In Complex With An Oxadiazole
Inhibitor
pdb|2IIT|A Chain A, Human Dipeptidyl Peptidase 4 In Complex With A
Diazepan-2-one Inhibitor
pdb|2IIT|B Chain B, Human Dipeptidyl Peptidase 4 In Complex With A
Diazepan-2-one Inhibitor
pdb|2IIV|A Chain A, Human Dipeptidyl Peptidase 4 In Complex With A
Diazepan-2-One Inhibitor
pdb|2IIV|B Chain B, Human Dipeptidyl Peptidase 4 In Complex With A
Diazepan-2-One Inhibitor
pdb|2OPH|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With An Alpha
Amino Acid Inhibitor
pdb|2OPH|B Chain B, Human Dipeptidyl Peptidase Iv In Complex With An Alpha
Amino Acid Inhibitor
pdb|2P8S|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
CYCLOHEXALAMINE Inhibitor
pdb|2P8S|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
CYCLOHEXALAMINE Inhibitor
pdb|2QOE|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With A
Triazolopiperazine- Based Beta Amino Acid Inhibitor
pdb|2QOE|B Chain B, Human Dipeptidyl Peptidase Iv In Complex With A
Triazolopiperazine- Based Beta Amino Acid Inhibitor
pdb|3C43|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
FLOUROOLEFIN Inhibitor
pdb|3C43|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
FLOUROOLEFIN Inhibitor
pdb|3C45|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
FLUOROOLEFIN Inhibitor
pdb|3C45|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
FLUOROOLEFIN Inhibitor
pdb|3D4L|A Chain A, Human Dipeptidyl Peptidase Iv/cd26 In Complex With A Novel
Inhibitor
pdb|3D4L|B Chain B, Human Dipeptidyl Peptidase Iv/cd26 In Complex With A Novel
Inhibitor
pdb|2QKY|A Chain A, Complex Structure Of Dipeptidyl Peptidase Iv And A
Oxadiazolyl Ketone
pdb|2QKY|B Chain B, Complex Structure Of Dipeptidyl Peptidase Iv And A
Oxadiazolyl Ketone
pdb|2QKY|C Chain C, Complex Structure Of Dipeptidyl Peptidase Iv And A
Oxadiazolyl Ketone
pdb|2QKY|D Chain D, Complex Structure Of Dipeptidyl Peptidase Iv And A
Oxadiazolyl Ketone
pdb|3HAB|A Chain A, The Structure Of Dpp4 In Complex With Piperidine Fused
Benzimidazole 25
pdb|3HAB|B Chain B, The Structure Of Dpp4 In Complex With Piperidine Fused
Benzimidazole 25
pdb|3HAC|A Chain A, The Structure Of Dpp-4 In Complex With Piperidine Fused
Imidazopyridine 34
pdb|3HAC|B Chain B, The Structure Of Dpp-4 In Complex With Piperidine Fused
Imidazopyridine 34
Length = 728
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 70/177 (39%), Gaps = 27/177 (15%)
Query: 379 PNSKLETSIFREIKVPDFDPSLFETKQVFYPSKDGTK-IPMFILSRKGAQLDGNNPCILY 437
P+ KL+ I E K F + + P D +K P+ + G PC
Sbjct: 472 PSKKLDFIILNETK--------FWYQMILPPHFDKSKKYPLLLDVYAG-------PCSQK 516
Query: 438 GYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGER-WHDGGRLLNKQNVFDDF 496
F ++ + T+ + + F+G RG G G++ H R L V D
Sbjct: 517 ADTVFRLNWATYLASTENIIVASFDG-------RGSGYQGDKIMHAINRRLGTFEVEDQI 569
Query: 497 QCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLF--GAAIVQVGNPEISD 551
+ A ++ G+ + R+AI G S GG +T+ + +F G A+ V E D
Sbjct: 570 EAARQFS-KMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYD 625
>pdb|3Q8W|A Chain A, A B-Aminoacyl Containing Thiazolidine Derivative And Dppiv
Complex
pdb|3Q8W|B Chain B, A B-Aminoacyl Containing Thiazolidine Derivative And Dppiv
Complex
Length = 732
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 70/177 (39%), Gaps = 27/177 (15%)
Query: 379 PNSKLETSIFREIKVPDFDPSLFETKQVFYPSKDGTK-IPMFILSRKGAQLDGNNPCILY 437
P+ KL+ I E K F + + P D +K P+ + G PC
Sbjct: 472 PSKKLDFIILNETK--------FWYQMILPPHFDKSKKYPLLLDVYAG-------PCSQK 516
Query: 438 GYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGER-WHDGGRLLNKQNVFDDF 496
F ++ + T+ + + F+G RG G G++ H R L V D
Sbjct: 517 ADTVFRLNWATYLASTENIIVASFDG-------RGSGYQGDKIMHAINRRLGTFEVEDQI 569
Query: 497 QCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLF--GAAIVQVGNPEISD 551
+ A ++ G+ + R+AI G S GG +T+ + +F G A+ V E D
Sbjct: 570 EAARQFS-KMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYD 625
>pdb|2G5P|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
21ac
pdb|2G5P|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
21ac
pdb|2G5T|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
21ag
pdb|2G5T|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
21ag
pdb|2G63|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
24b
pdb|2G63|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
24b
pdb|2G63|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
24b
pdb|2G63|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
24b
pdb|2I03|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase 4 (Dpp Iv)
With Potent Alkynyl Cyanopyrrolidine (Abt-279)
pdb|2I03|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase 4 (Dpp Iv)
With Potent Alkynyl Cyanopyrrolidine (Abt-279)
pdb|2I03|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase 4 (Dpp Iv)
With Potent Alkynyl Cyanopyrrolidine (Abt-279)
pdb|2I03|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase 4 (Dpp Iv)
With Potent Alkynyl Cyanopyrrolidine (Abt-279)
pdb|2OQV|A Chain A, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidine-
Constrained Phenethylamine
pdb|2OQV|B Chain B, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidine-
Constrained Phenethylamine
pdb|2I78|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dpp
Iv) Complexed With Abt-341, A Cyclohexene-Constrained
Phenethylamine Inhibitor
pdb|2I78|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dpp
Iv) Complexed With Abt-341, A Cyclohexene-Constrained
Phenethylamine Inhibitor
pdb|2I78|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dpp
Iv) Complexed With Abt-341, A Cyclohexene-Constrained
Phenethylamine Inhibitor
pdb|2I78|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dpp
Iv) Complexed With Abt-341, A Cyclohexene-Constrained
Phenethylamine Inhibitor
pdb|2OAG|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
With Pyrrolidine-Constrained Phenethylamine 29g
pdb|2OAG|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
With Pyrrolidine-Constrained Phenethylamine 29g
pdb|2OAG|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
With Pyrrolidine-Constrained Phenethylamine 29g
pdb|2OAG|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
With Pyrrolidine-Constrained Phenethylamine 29g
Length = 726
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 70/177 (39%), Gaps = 27/177 (15%)
Query: 379 PNSKLETSIFREIKVPDFDPSLFETKQVFYPSKDGTK-IPMFILSRKGAQLDGNNPCILY 437
P+ KL+ I E K F + + P D +K P+ + G PC
Sbjct: 472 PSKKLDFIILNETK--------FWYQMILPPHFDKSKKYPLLLDVYAG-------PCSQK 516
Query: 438 GYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGER-WHDGGRLLNKQNVFDDF 496
F ++ + T+ + + F+G RG G G++ H R L V D
Sbjct: 517 ADTVFRLNWATYLASTENIIVASFDG-------RGSGYQGDKIMHAINRRLGTFEVEDQI 569
Query: 497 QCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLF--GAAIVQVGNPEISD 551
+ A ++ G+ + R+AI G S GG +T+ + +F G A+ V E D
Sbjct: 570 EAARQFS-KMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYD 625
>pdb|2QJR|A Chain A, Dipepdyl Peptidase Iv In Complex With Inhibitor Pzf
pdb|2QJR|B Chain B, Dipepdyl Peptidase Iv In Complex With Inhibitor Pzf
pdb|3F8S|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Inhibitor
pdb|3F8S|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Inhibitor
Length = 748
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 70/177 (39%), Gaps = 27/177 (15%)
Query: 379 PNSKLETSIFREIKVPDFDPSLFETKQVFYPSKDGTK-IPMFILSRKGAQLDGNNPCILY 437
P+ KL+ I E K F + + P D +K P+ + G PC
Sbjct: 480 PSKKLDFIILNETK--------FWYQMILPPHFDKSKKYPLLLDVYAG-------PCSQK 524
Query: 438 GYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGER-WHDGGRLLNKQNVFDDF 496
F ++ + T+ + + F+G RG G G++ H R L V D
Sbjct: 525 ADTVFRLNWATYLASTENIIVASFDG-------RGSGYQGDKIMHAINRRLGTFEVEDQI 577
Query: 497 QCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLF--GAAIVQVGNPEISD 551
+ A ++ G+ + R+AI G S GG +T+ + +F G A+ V E D
Sbjct: 578 EAARQFS-KMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYD 633
>pdb|1N1M|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH AN
INHIBITOR
pdb|1N1M|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH AN
INHIBITOR
pdb|1NU6|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv
(Dpp-Iv)
pdb|1NU6|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv
(Dpp-Iv)
pdb|1NU8|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv
(Dpp-Iv) In Complex With Diprotin A (Ili)
pdb|1NU8|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv
(Dpp-Iv) In Complex With Diprotin A (Ili)
pdb|1TK3|A Chain A, Crystal Structure Of Human Apo Dipeptidyl Peptidase IvCD26
pdb|1TK3|B Chain B, Crystal Structure Of Human Apo Dipeptidyl Peptidase IvCD26
pdb|1TKR|A Chain A, Human Dipeptidyl Peptidase IvCD26 INHIBITED WITH
DIISOPROPYL Fluorophosphate
pdb|1TKR|B Chain B, Human Dipeptidyl Peptidase IvCD26 INHIBITED WITH
DIISOPROPYL Fluorophosphate
pdb|1W1I|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
pdb|1W1I|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
pdb|1W1I|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
pdb|1W1I|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
pdb|1RWQ|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With
5-Aminomethyl-6-(2,4-
Dichloro-Phenyl)-2-(3,
5-Dimethoxy-Phenyl)-Pyrimidin-4-Ylamine
pdb|1RWQ|B Chain B, Human Dipeptidyl Peptidase Iv In Complex With
5-Aminomethyl-6-(2,4-
Dichloro-Phenyl)-2-(3,
5-Dimethoxy-Phenyl)-Pyrimidin-4-Ylamine
pdb|2BGN|A Chain A, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
pdb|2BGN|B Chain B, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
pdb|2BGN|C Chain C, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
pdb|2BGN|D Chain D, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
pdb|2AJL|I Chain I, X-Ray Structure Of Novel Biaryl-Based Dipeptidyl Peptidase
Iv Inhibitor
pdb|2AJL|J Chain J, X-Ray Structure Of Novel Biaryl-Based Dipeptidyl Peptidase
Iv Inhibitor
pdb|2BUB|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Cd26)
In Complex With A Reversed Amide Inhibitor
pdb|2BUB|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Cd26)
In Complex With A Reversed Amide Inhibitor
pdb|2OGZ|A Chain A, Crystal Structure Of Dpp-Iv Complexed With Lilly Aryl
Ketone Inhibitor
pdb|2OGZ|B Chain B, Crystal Structure Of Dpp-Iv Complexed With Lilly Aryl
Ketone Inhibitor
pdb|2OQI|A Chain A, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidinone-
Constrained Phenethylamine
pdb|2OQI|B Chain B, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidinone-
Constrained Phenethylamine
pdb|2OQI|C Chain C, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidinone-
Constrained Phenethylamine
pdb|2OQI|D Chain D, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidinone-
Constrained Phenethylamine
pdb|2OLE|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complex With Cyclic Hydrazine Derivatives
pdb|2OLE|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complex With Cyclic Hydrazine Derivatives
pdb|3BJM|A Chain A, Crystal Structure Of Human Dpp-Iv In Complex With (1s,3s,
5s)-2-[(2s)-
2-Amino-2-(3-Hydroxytricyclo[3.3.1.13,7]dec-1-
Yl)acetyl]-2- Azabicyclo[3.1.0]hexane-3-Carbonitrile
(Cas), (1s,3s,5s)-2-((2s)-2-
Amino-2-(3-Hydroxyadamantan-1-
Yl)acetyl)-2-Azabicyclo[3.1.0]hexane- 3-Carbonitrile
(Iupac), Or Bms-477118
pdb|3BJM|B Chain B, Crystal Structure Of Human Dpp-Iv In Complex With (1s,3s,
5s)-2-[(2s)-
2-Amino-2-(3-Hydroxytricyclo[3.3.1.13,7]dec-1-
Yl)acetyl]-2- Azabicyclo[3.1.0]hexane-3-Carbonitrile
(Cas), (1s,3s,5s)-2-((2s)-2-
Amino-2-(3-Hydroxyadamantan-1-
Yl)acetyl)-2-Azabicyclo[3.1.0]hexane- 3-Carbonitrile
(Iupac), Or Bms-477118
pdb|3EIO|A Chain A, Crystal Structure Analysis Of Dppiv Inhibitor
pdb|3EIO|B Chain B, Crystal Structure Analysis Of Dppiv Inhibitor
pdb|3H0C|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Cd26)
In Complex With A Reversed Amide Inhibitor
pdb|3H0C|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Cd26)
In Complex With A Reversed Amide Inhibitor
pdb|3KWF|A Chain A, Human Dpp-Iv With Carmegliptin
(S)-1-((2s,3s,11bs)-2-Amino-
9,10-Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,1-
A]isoquinolin-3-Yl)-4-Fluoromethyl-Pyrrolidin-2-One
pdb|3KWF|B Chain B, Human Dpp-Iv With Carmegliptin
(S)-1-((2s,3s,11bs)-2-Amino-
9,10-Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,1-
A]isoquinolin-3-Yl)-4-Fluoromethyl-Pyrrolidin-2-One
pdb|3OC0|A Chain A, Structure Of Human Dpp-Iv With Hts Hit
(2s,3s,11bs)-3-Butyl-9,10-
Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,
1-A]isoquinolin-2- Ylamine
pdb|3OC0|B Chain B, Structure Of Human Dpp-Iv With Hts Hit
(2s,3s,11bs)-3-Butyl-9,10-
Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,
1-A]isoquinolin-2- Ylamine
pdb|3KWJ|A Chain A, Strucutre Of Human Dpp-Iv With
(2s,3s,11bs)-3-(3-Fluoromethyl-Phenyl)-
9,10-Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,
1-A]isoquinolin-2- Ylamine
pdb|3KWJ|B Chain B, Strucutre Of Human Dpp-Iv With
(2s,3s,11bs)-3-(3-Fluoromethyl-Phenyl)-
9,10-Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,
1-A]isoquinolin-2- Ylamine
pdb|4DSA|A Chain A, Crystal Structure Of Dpp-iv With Compound C1
pdb|4DSA|B Chain B, Crystal Structure Of Dpp-iv With Compound C1
pdb|4DSZ|A Chain A, Crystal Structure Of Dpp-iv With Compound C2
pdb|4DSZ|B Chain B, Crystal Structure Of Dpp-iv With Compound C2
pdb|4DTC|A Chain A, Crystal Structure Of Dpp-iv With Compound C5
pdb|4DTC|B Chain B, Crystal Structure Of Dpp-iv With Compound C5
Length = 728
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 70/177 (39%), Gaps = 27/177 (15%)
Query: 379 PNSKLETSIFREIKVPDFDPSLFETKQVFYPSKDGTK-IPMFILSRKGAQLDGNNPCILY 437
P+ KL+ I E K F + + P D +K P+ + G PC
Sbjct: 472 PSKKLDFIILNETK--------FWYQMILPPHFDKSKKYPLLLDVYAG-------PCSQK 516
Query: 438 GYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGER-WHDGGRLLNKQNVFDDF 496
F ++ + T+ + + F+G RG G G++ H R L V D
Sbjct: 517 ADTVFRLNWATYLASTENIIVASFDG-------RGSGYQGDKIMHAINRRLGTFEVEDQI 569
Query: 497 QCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLF--GAAIVQVGNPEISD 551
+ A ++ G+ + R+AI G S GG +T+ + +F G A+ V E D
Sbjct: 570 EAARQFS-KMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYD 625
>pdb|2RGU|A Chain A, Crystal Structure Of Complex Of Human Dpp4 And Inhibitor
pdb|2RGU|B Chain B, Crystal Structure Of Complex Of Human Dpp4 And Inhibitor
Length = 734
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 70/177 (39%), Gaps = 27/177 (15%)
Query: 379 PNSKLETSIFREIKVPDFDPSLFETKQVFYPSKDGTK-IPMFILSRKGAQLDGNNPCILY 437
P+ KL+ I E K F + + P D +K P+ + G PC
Sbjct: 472 PSKKLDFIILNETK--------FWYQMILPPHFDKSKKYPLLLDVYAG-------PCSQK 516
Query: 438 GYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGER-WHDGGRLLNKQNVFDDF 496
F ++ + T+ + + F+G RG G G++ H R L V D
Sbjct: 517 ADTVFRLNWATYLASTENIIVASFDG-------RGSGYQGDKIMHAINRRLGTFEVEDQI 569
Query: 497 QCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLF--GAAIVQVGNPEISD 551
+ A ++ G+ + R+AI G S GG +T+ + +F G A+ V E D
Sbjct: 570 EAARQFS-KMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYD 625
>pdb|2BGR|A Chain A, Crystal Structure Of Hiv-1 Tat Derived Nonapeptides
Tat(1-9) Bound To The Active Site Of Dipeptidyl
Peptidase Iv (Cd26)
pdb|2BGR|B Chain B, Crystal Structure Of Hiv-1 Tat Derived Nonapeptides
Tat(1-9) Bound To The Active Site Of Dipeptidyl
Peptidase Iv (Cd26)
Length = 738
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 70/177 (39%), Gaps = 27/177 (15%)
Query: 379 PNSKLETSIFREIKVPDFDPSLFETKQVFYPSKDGTK-IPMFILSRKGAQLDGNNPCILY 437
P+ KL+ I E K F + + P D +K P+ + G PC
Sbjct: 482 PSKKLDFIILNETK--------FWYQMILPPHFDKSKKYPLLLDVYAG-------PCSQK 526
Query: 438 GYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGER-WHDGGRLLNKQNVFDDF 496
F ++ + T+ + + F+G RG G G++ H R L V D
Sbjct: 527 ADTVFRLNWATYLASTENIIVASFDG-------RGSGYQGDKIMHAINRRLGTFEVEDQI 579
Query: 497 QCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLF--GAAIVQVGNPEISD 551
+ A ++ G+ + R+AI G S GG +T+ + +F G A+ V E D
Sbjct: 580 EAARQFS-KMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYD 635
>pdb|2RIP|A Chain A, Structure Of Dppiv In Complex With An Inhibitor
Length = 729
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 70/177 (39%), Gaps = 27/177 (15%)
Query: 379 PNSKLETSIFREIKVPDFDPSLFETKQVFYPSKDGTK-IPMFILSRKGAQLDGNNPCILY 437
P+ KL+ I E K F + + P D +K P+ + G PC
Sbjct: 473 PSKKLDFIILNETK--------FWYQMILPPHFDKSKKYPLLLDVYAG-------PCSQK 517
Query: 438 GYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGER-WHDGGRLLNKQNVFDDF 496
F ++ + T+ + + F+G RG G G++ H R L V D
Sbjct: 518 ADTVFRLNWATYLASTENIIVASFDG-------RGSGYQGDKIMHAINRRLGTFEVEDQI 570
Query: 497 QCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLF--GAAIVQVGNPEISD 551
+ A ++ G+ + R+AI G S GG +T+ + +F G A+ V E D
Sbjct: 571 EAARQFS-KMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYD 626
>pdb|1PFQ|A Chain A, Crystal Structure Of Human Apo Dipeptidyl Peptidase Iv /
Cd26
pdb|1PFQ|B Chain B, Crystal Structure Of Human Apo Dipeptidyl Peptidase Iv /
Cd26
Length = 731
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 70/177 (39%), Gaps = 27/177 (15%)
Query: 379 PNSKLETSIFREIKVPDFDPSLFETKQVFYPSKDGTK-IPMFILSRKGAQLDGNNPCILY 437
P+ KL+ I E K F + + P D +K P+ + G PC
Sbjct: 475 PSKKLDFIILNETK--------FWYQMILPPHFDKSKKYPLLLDVYAG-------PCSQK 519
Query: 438 GYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGER-WHDGGRLLNKQNVFDDF 496
F ++ + T+ + + F+G RG G G++ H R L V D
Sbjct: 520 ADTVFRLNWATYLASTENIIVASFDG-------RGSGYQGDKIMHAINRRLGTFEVEDQI 572
Query: 497 QCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLF--GAAIVQVGNPEISD 551
+ A ++ G+ + R+AI G S GG +T+ + +F G A+ V E D
Sbjct: 573 EAARQFS-KMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYD 628
>pdb|3CCB|A Chain A, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCB|B Chain B, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCB|C Chain C, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCB|D Chain D, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCC|A Chain A, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCC|B Chain B, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCC|C Chain C, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCC|D Chain D, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3G0B|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Tak-322
pdb|3G0B|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Tak-322
pdb|3G0B|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Tak-322
pdb|3G0B|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Tak-322
pdb|3G0C|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 1
pdb|3G0C|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 1
pdb|3G0C|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 1
pdb|3G0C|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 1
pdb|3G0D|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 2
pdb|3G0D|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 2
pdb|3G0D|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 2
pdb|3G0D|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 2
pdb|3G0G|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinone Inhibitor 3
pdb|3G0G|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinone Inhibitor 3
pdb|3G0G|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinone Inhibitor 3
pdb|3G0G|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinone Inhibitor 3
pdb|3O95|A Chain A, Crystal Structure Of Human Dpp4 Bound To Tak-100
pdb|3O95|B Chain B, Crystal Structure Of Human Dpp4 Bound To Tak-100
pdb|3O95|C Chain C, Crystal Structure Of Human Dpp4 Bound To Tak-100
pdb|3O95|D Chain D, Crystal Structure Of Human Dpp4 Bound To Tak-100
pdb|3O9V|A Chain A, Crystal Structure Of Human Dpp4 Bound To Tak-986
pdb|3O9V|B Chain B, Crystal Structure Of Human Dpp4 Bound To Tak-986
pdb|3O9V|C Chain C, Crystal Structure Of Human Dpp4 Bound To Tak-986
pdb|3O9V|D Chain D, Crystal Structure Of Human Dpp4 Bound To Tak-986
pdb|3OPM|A Chain A, Crystal Structure Of Human Dpp4 Bound To Tak-294
pdb|3OPM|B Chain B, Crystal Structure Of Human Dpp4 Bound To Tak-294
pdb|3OPM|C Chain C, Crystal Structure Of Human Dpp4 Bound To Tak-294
pdb|3OPM|D Chain D, Crystal Structure Of Human Dpp4 Bound To Tak-294
pdb|4G1F|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Pyridopyrimidinedione Analogue
pdb|4G1F|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Pyridopyrimidinedione Analogue
pdb|4G1F|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Pyridopyrimidinedione Analogue
pdb|4G1F|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Pyridopyrimidinedione Analogue
Length = 740
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 70/177 (39%), Gaps = 27/177 (15%)
Query: 379 PNSKLETSIFREIKVPDFDPSLFETKQVFYPSKDGTK-IPMFILSRKGAQLDGNNPCILY 437
P+ KL+ I E K F + + P D +K P+ + G PC
Sbjct: 484 PSKKLDFIILNETK--------FWYQMILPPHFDKSKKYPLLLDVYAG-------PCSQK 528
Query: 438 GYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGER-WHDGGRLLNKQNVFDDF 496
F ++ + T+ + + F+G RG G G++ H R L V D
Sbjct: 529 ADTVFRLNWATYLASTENIIVASFDG-------RGSGYQGDKIMHAINRRLGTFEVEDQI 581
Query: 497 QCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLF--GAAIVQVGNPEISD 551
+ A ++ G+ + R+AI G S GG +T+ + +F G A+ V E D
Sbjct: 582 EAARQFS-KMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYD 637
>pdb|3QBJ|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Inhibitor
pdb|3QBJ|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Inhibitor
Length = 748
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 70/177 (39%), Gaps = 27/177 (15%)
Query: 379 PNSKLETSIFREIKVPDFDPSLFETKQVFYPSKDGTK-IPMFILSRKGAQLDGNNPCILY 437
P+ KL+ I E K F + + P D +K P+ + G PC
Sbjct: 480 PSKKLDFIILAETK--------FWYQMILPPHFDKSKKYPLLLDVYAG-------PCSQK 524
Query: 438 GYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGER-WHDGGRLLNKQNVFDDF 496
F ++ + T+ + + F+G RG G G++ H R L V D
Sbjct: 525 ADTVFRLNWATYLASTENIIVASFDG-------RGSGYQGDKIMHAINRRLGTFEVEDQI 577
Query: 497 QCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLF--GAAIVQVGNPEISD 551
+ A ++ G+ + R+AI G S GG +T+ + +F G A+ V E D
Sbjct: 578 EAARQFS-KMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYD 633
>pdb|1U8E|A Chain A, Human Dipeptidyl Peptidase IvCD26 MUTANT Y547F
pdb|1U8E|B Chain B, Human Dipeptidyl Peptidase IvCD26 MUTANT Y547F
Length = 728
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 70/177 (39%), Gaps = 27/177 (15%)
Query: 379 PNSKLETSIFREIKVPDFDPSLFETKQVFYPSKDGTK-IPMFILSRKGAQLDGNNPCILY 437
P+ KL+ I E K F + + P D +K P+ + G PC
Sbjct: 472 PSKKLDFIILNETK--------FWYQMILPPHFDKSKKYPLLLDVFAG-------PCSQK 516
Query: 438 GYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGER-WHDGGRLLNKQNVFDDF 496
F ++ + T+ + + F+G RG G G++ H R L V D
Sbjct: 517 ADTVFRLNWATYLASTENIIVASFDG-------RGSGYQGDKIMHAINRRLGTFEVEDQI 569
Query: 497 QCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLF--GAAIVQVGNPEISD 551
+ A ++ G+ + R+AI G S GG +T+ + +F G A+ V E D
Sbjct: 570 EAARQFS-KMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYD 625
>pdb|2Z3W|A Chain A, Prolyl Tripeptidyl Aminopeptidase Mutant E636a
pdb|2Z3Z|A Chain A, Prolyl Tripeptidyl Aminopeptidase Mutant E636a Complexd
With An Inhibitor
Length = 706
Score = 33.9 bits (76), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 490 QNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEI 549
Q D C ++L + + + R+ + G S GG +T + D+F + G P I
Sbjct: 547 QTEMADQMCGVDFLKSQSWVDADRIGVHGWSYGGFMTTNLMLTHGDVFKVGV--AGGPVI 604
Query: 550 SDCGRWLIVH 559
D R+ I++
Sbjct: 605 -DWNRYAIMY 613
>pdb|3AZO|A Chain A, Crystal Structure Of Puromycin Hydrolase
pdb|3AZO|B Chain B, Crystal Structure Of Puromycin Hydrolase
Length = 662
Score = 33.9 bits (76), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 56/141 (39%), Gaps = 10/141 (7%)
Query: 397 DPSLFETKQV-FYPSKDGTKIPMFILSRKGAQLDGNN----PCILYGYGGFAVSLQPGFS 451
DP+ + Q+ + + DG +I I G P ++ +GG +
Sbjct: 384 DPAYYPEPQIRTFTAPDGREIHAHIYPPHSPDFTGPADELPPYVVXAHGGPTSRVPAVLD 443
Query: 452 VTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAA--EYLIASGYT 509
+ F G+ + N G YG + + RL + V D CAA L G
Sbjct: 444 LDVAYFTSRGIGVADV-NYGGSTGYGRAYRE--RLRGRWGVVDVEDCAAVATALAEEGTA 500
Query: 510 QSSRLAIQGGSNGGLLTAACI 530
+RLA++GGS GG A+ +
Sbjct: 501 DRARLAVRGGSAGGWTAASSL 521
>pdb|2D5L|A Chain A, Crystal Structure Of Prolyl Tripeptidyl Aminopeptidase
From Porphyromonas Gingivalis
pdb|2EEP|A Chain A, Prolyl Tripeptidyl Aminopeptidase Complexed With An
Inhibitor
Length = 706
Score = 33.1 bits (74), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 490 QNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEI 549
Q D C ++L + + + R+ + G S GG +T + D+F + G P I
Sbjct: 547 QTEMADQMCGVDFLKSQSWVDADRIGVHGWSYGGFMTTNLMLTHGDVFKVGV--AGGPVI 604
Query: 550 SDCGRWLIVH 559
D R+ I++
Sbjct: 605 -DWNRYEIMY 613
>pdb|1Z68|A Chain A, Crystal Structure Of Human Fibroblast Activation Protein
Alpha
pdb|1Z68|B Chain B, Crystal Structure Of Human Fibroblast Activation Protein
Alpha
Length = 719
Score = 33.1 bits (74), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 6/121 (4%)
Query: 433 PCILYGYGG-FAVSLQPGFSVTKIVFLRDFNG-IYAIPNIRGGGEYGERW-HDGGRLLNK 489
P ++ YGG + S++ F+V I +L G + A+ + RG G++ + R L
Sbjct: 497 PLLIQVYGGPCSQSVRSVFAVNWISYLASKEGMVIALVDGRGTAFQGDKLLYAVYRKLGV 556
Query: 490 QNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLF--GAAIVQVGNP 547
V D A I G+ R+AI G S GG +++ + LF G A+ V +
Sbjct: 557 YEVEDQI-TAVRKFIEMGFIDEKRIAIWGWSYGGYVSSLALASGTGLFKCGIAVAPVSSW 615
Query: 548 E 548
E
Sbjct: 616 E 616
>pdb|1ORV|A Chain A, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26)
pdb|1ORV|B Chain B, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26)
pdb|1ORV|C Chain C, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26)
pdb|1ORV|D Chain D, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26)
pdb|1ORW|A Chain A, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Peptidomimetic Inhibitor
pdb|1ORW|B Chain B, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Peptidomimetic Inhibitor
pdb|1ORW|C Chain C, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Peptidomimetic Inhibitor
pdb|1ORW|D Chain D, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Peptidomimetic Inhibitor
pdb|2BUA|A Chain A, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Low Molecular Weight Inhibitor.
pdb|2BUA|B Chain B, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Low Molecular Weight Inhibitor.
pdb|2BUA|C Chain C, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Low Molecular Weight Inhibitor.
pdb|2BUA|D Chain D, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Low Molecular Weight Inhibitor.
pdb|2BUC|A Chain A, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Tetrahydroisoquinoline
Inhibitor
pdb|2BUC|B Chain B, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Tetrahydroisoquinoline
Inhibitor
pdb|2BUC|C Chain C, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Tetrahydroisoquinoline
Inhibitor
pdb|2BUC|D Chain D, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Tetrahydroisoquinoline
Inhibitor
pdb|2AJ8|A Chain A, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
7-Benzyl-1,3-
Dimethyl-8-Piperazin-1-Yl-3,7-Dihydro-Purine-2,6-Dione
(Bdpx)
pdb|2AJ8|B Chain B, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
7-Benzyl-1,3-
Dimethyl-8-Piperazin-1-Yl-3,7-Dihydro-Purine-2,6-Dione
(Bdpx)
pdb|2AJ8|C Chain C, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
7-Benzyl-1,3-
Dimethyl-8-Piperazin-1-Yl-3,7-Dihydro-Purine-2,6-Dione
(Bdpx)
pdb|2AJ8|D Chain D, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
7-Benzyl-1,3-
Dimethyl-8-Piperazin-1-Yl-3,7-Dihydro-Purine-2,6-Dione
(Bdpx)
pdb|2AJB|A Chain A, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With The
Tripeptide Tert-Butyl-Gly-L-Pro-L-Ile (Tbu-Gpi)
pdb|2AJB|B Chain B, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With The
Tripeptide Tert-Butyl-Gly-L-Pro-L-Ile (Tbu-Gpi)
pdb|2AJB|C Chain C, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With The
Tripeptide Tert-Butyl-Gly-L-Pro-L-Ile (Tbu-Gpi)
pdb|2AJB|D Chain D, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With The
Tripeptide Tert-Butyl-Gly-L-Pro-L-Ile (Tbu-Gpi)
pdb|2AJC|A Chain A, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
4-(2- Aminoethyl)-Benzene Sulphonyl Fluoride (Aebsf)
pdb|2AJC|B Chain B, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
4-(2- Aminoethyl)-Benzene Sulphonyl Fluoride (Aebsf)
pdb|2AJC|C Chain C, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
4-(2- Aminoethyl)-Benzene Sulphonyl Fluoride (Aebsf)
pdb|2AJC|D Chain D, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
4-(2- Aminoethyl)-Benzene Sulphonyl Fluoride (Aebsf)
pdb|2AJD|A Chain A, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
L-Pro-Boro-L- Pro (Boropro)
pdb|2AJD|B Chain B, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
L-Pro-Boro-L- Pro (Boropro)
pdb|2AJD|C Chain C, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
L-Pro-Boro-L- Pro (Boropro)
pdb|2AJD|D Chain D, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
L-Pro-Boro-L- Pro (Boropro)
Length = 728
Score = 33.1 bits (74), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 66/167 (39%), Gaps = 19/167 (11%)
Query: 389 REIKVPDFDPSLFETKQVFYPSKDGTK-IPMFILSRKGAQLDGNNPCILYGYGGFAVSLQ 447
+++ V + + F + + P D +K P+ I G PC F +S
Sbjct: 474 KKLDVINLHGTKFWYQMILPPHFDKSKKYPLLIEVYAG-------PCSQKVDTVFRLSWA 526
Query: 448 PGFSVTKIVFLRDFNGIYAIPNIRGGGEYGER-WHDGGRLLNKQNVFDDFQCAAEYLIAS 506
+ T+ + + F+G RG G G++ H R L V D + ++
Sbjct: 527 TYLASTENIIVASFDG-------RGSGYQGDKIMHAINRRLGTFEVEDQIEATRQFS-KM 578
Query: 507 GYTQSSRLAIQGGSNGGLLTAACINQRPDLF--GAAIVQVGNPEISD 551
G+ R+AI G S GG +T+ + +F G A+ V E D
Sbjct: 579 GFVDDKRIAIWGWSYGGYVTSMVLGAGSGVFKCGIAVAPVSKWEYYD 625
>pdb|2DCM|A Chain A, The Crystal Structure Of S603a Mutated Prolyl Tripeptidyl
Aminopeptidase Complexed With Substrate
Length = 706
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 490 QNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEI 549
Q D C ++L + + + R+ + G + GG +T + D+F + G P I
Sbjct: 547 QTEMADQMCGVDFLKSQSWVDADRIGVHGWAYGGFMTTNLMLTHGDVFKVGV--AGGPVI 604
Query: 550 SDCGRWLIVH 559
D R+ I++
Sbjct: 605 -DWNRYEIMY 613
>pdb|1P7C|A Chain A, Crystal Structure Of Hsv1-Tk Complexed With Tp5a
pdb|1P7C|B Chain B, Crystal Structure Of Hsv1-Tk Complexed With Tp5a
pdb|1VTK|A Chain A, Thymidine Kinase From Herpes Simplex Virus Type 1 In
Complex With Adp And Deoxythymidine-monophosphate
pdb|2VTK|A Chain A, Thymidine Kinase From Herpes Simplex Virus Type 1 In
Complex With Adp And Deoxythymidine
pdb|3VTK|A Chain A, Thymidine Kinase From Herpes Simplex Virus Type 1 In
Complex With Adp And 5-Iodo-Deoxyuridine-Monophosphate
Length = 343
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 18/36 (50%)
Query: 842 QEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQLCV 877
QE P Q P L+R+ HG GK TT QL V
Sbjct: 2 QEATEVRPEQKMPTLLRVYIDGPHGMGKTTTTQLLV 37
>pdb|1KIM|A Chain A, Crystal Structure Of Thymidine Kinase From Herpes Simplex
Virus Type I Complexed With Deoxythymidine
pdb|1KIM|B Chain B, Crystal Structure Of Thymidine Kinase From Herpes Simplex
Virus Type I Complexed With Deoxythymidine
pdb|2KI5|A Chain A, Herpes Simplex Type-1 Thymidine Kinase In Complex With The
Drug Aciclovir At 1.9a Resolution
pdb|2KI5|B Chain B, Herpes Simplex Type-1 Thymidine Kinase In Complex With The
Drug Aciclovir At 1.9a Resolution
Length = 366
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 18/36 (50%)
Query: 842 QEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQLCV 877
QE P Q P L+R+ HG GK TT QL V
Sbjct: 25 QEATEVRPEQKMPTLLRVYIDGPHGMGKTTTTQLLV 60
>pdb|1QHI|A Chain A, Herpes Simplex Virus Type-i Thymidine Kinase Complexed
With A Novel Non-substrate Inhibitor,
9-(4-hydroxybutyl)-n2- Phenylguanine
pdb|1QHI|B Chain B, Herpes Simplex Virus Type-i Thymidine Kinase Complexed
With A Novel Non-substrate Inhibitor,
9-(4-hydroxybutyl)-n2- Phenylguanine
Length = 366
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 18/36 (50%)
Query: 842 QEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQLCV 877
QE P Q P L+R+ HG GK TT QL V
Sbjct: 25 QEATEVRPEQKMPTLLRVYIDGPHGMGKTTTTQLLV 60
>pdb|1OF1|A Chain A, Kinetics And Crystal Structure Of The Herpes Simplex Virus
Type 1 Thymidine Kinase Interacting With
(South)-Methanocarba-Thymidine
pdb|1OF1|B Chain B, Kinetics And Crystal Structure Of The Herpes Simplex Virus
Type 1 Thymidine Kinase Interacting With
(South)-Methanocarba-Thymidine
Length = 376
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 18/36 (50%)
Query: 842 QEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQLCV 877
QE P Q P L+R+ HG GK TT QL V
Sbjct: 35 QEATEVRPEQKMPTLLRVYIDGPHGMGKTTTTQLLV 70
>pdb|1VGP|A Chain A, Crystal Structure Of An Isozyme Of Citrate Synthase From
Sulfolbus Tokodaii Strain7
Length = 373
Score = 30.0 bits (66), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 807 PNELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQE 843
PNE+K K TL++ DH+ S SL A+T +
Sbjct: 162 PNEIKSKAMDVTLILHIDHEMNASTFASLVVASTFSD 198
>pdb|1CRZ|A Chain A, Crystal Structure Of The E. Coli Tolb Protein
Length = 403
Score = 29.6 bits (65), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 160 GSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLHRLKFVSIAWTHDHKGVFY 219
G+ +FS DG LA+ LS +GS +++ D+A+G+ R W D + + +
Sbjct: 220 GAPAFSPDGSKLAFALSKTGS--LNLYVXDLASGQIRQVTDGRSNNTEPTWFPDSQNLAF 277
Query: 220 SNQE 223
++ +
Sbjct: 278 TSDQ 281
>pdb|2W8B|B Chain B, Crystal Structure Of Processed Tolb In Complex With Pal
pdb|2W8B|D Chain D, Crystal Structure Of Processed Tolb In Complex With Pal
pdb|2W8B|F Chain F, Crystal Structure Of Processed Tolb In Complex With Pal
Length = 409
Score = 29.6 bits (65), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 160 GSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLHRLKFVSIAWTHDHKGVFY 219
G+ +FS DG LA+ LS +GS +++ D+A+G+ R W D + + +
Sbjct: 226 GAPAFSPDGSKLAFALSKTGS--LNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAF 283
Query: 220 SNQE 223
++ +
Sbjct: 284 TSDQ 287
>pdb|2W8B|A Chain A, Crystal Structure Of Processed Tolb In Complex With Pal
Length = 409
Score = 29.6 bits (65), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 160 GSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLHRLKFVSIAWTHDHKGVFY 219
G+ +FS DG LA+ LS +GS +++ D+A+G+ R W D + + +
Sbjct: 226 GAPAFSPDGSKLAFALSKTGS--LNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAF 283
Query: 220 SNQE 223
++ +
Sbjct: 284 TSDQ 287
>pdb|2HQS|A Chain A, Crystal Structure Of TolbPAL COMPLEX
pdb|2HQS|B Chain B, Crystal Structure Of TolbPAL COMPLEX
pdb|2HQS|D Chain D, Crystal Structure Of TolbPAL COMPLEX
pdb|2HQS|F Chain F, Crystal Structure Of TolbPAL COMPLEX
Length = 415
Score = 29.6 bits (65), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 160 GSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLHRLKFVSIAWTHDHKGVFY 219
G+ +FS DG LA+ LS +GS +++ D+A+G+ R W D + + +
Sbjct: 226 GAPAFSPDGSKLAFALSKTGS--LNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAF 283
Query: 220 SNQE 223
++ +
Sbjct: 284 TSDQ 287
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,601,626
Number of Sequences: 62578
Number of extensions: 1553240
Number of successful extensions: 3321
Number of sequences better than 100.0: 70
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 3040
Number of HSP's gapped (non-prelim): 220
length of query: 1012
length of database: 14,973,337
effective HSP length: 108
effective length of query: 904
effective length of database: 8,214,913
effective search space: 7426281352
effective search space used: 7426281352
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)