RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1288
(1012 letters)
>gnl|CDD|224422 COG1505, COG1505, Serine proteases of the peptidase family S9A
[Amino acid transport and metabolism].
Length = 648
Score = 428 bits (1103), Expect = e-138
Identities = 216/706 (30%), Positives = 313/706 (44%), Gaps = 133/706 (18%)
Query: 57 PDPYGWMEDPDSEETKKFVDEENAISRPYLEDHPDRDKVKAELTKMWDYPKYSSPQRQGD 116
PDPY W+ED DS E K+V+ +NA +R +L + R L ++WDY P +G
Sbjct: 3 PDPYRWLEDLDSAEALKWVEAQNAKTREFLGEDSARAASDKRLLELWDYEDIPIPFERGG 62
Query: 117 HYFFFHN-----TGLQNHSVMYIQDSLDGEARVFLDPNNLSDDG--TVSLGSYSFSEDGK 169
Y+ F GL + + S E V +D + LS D V+LG S DG
Sbjct: 63 RYYNFWQDALYPRGLYRRTTLETYRSAKPEWEVLIDVDALSADLGDKVALGGASVLPDGT 122
Query: 170 TLAYCLSSSGSDWTSMHFKDVATGK-------EYPEVLHRLK---FVSIAWTHDHK---G 216
L Y LS GSD D+ TG+ ++P + FVS W K G
Sbjct: 123 RLLYSLSIGGSDAGITREFDLETGEFVEEEGFKFPGISWLDDDGVFVSRYWRPKEKTPSG 182
Query: 217 VFYSNQ--------EPKSKSKKHSKKNRSSAYHLTVNVAP------ITSQYITNEGP--- 259
+ E + + + + + ++ ++ T+
Sbjct: 183 YPRVVKRLKRGKLFEGQEGDVMVNARGDQDPWGFRLVLSEDGDFFMLSLWLGTSGKGLIK 242
Query: 260 ------------QFVFKTNKDAP----NYRLITIDFDNFAE-SNWKTLIEENKDDVLDWA 302
+ V D +Y L+ + D E ++ L+
Sbjct: 243 LGLPDKVGYEWGKLVNTLRADWTFADVDYGLLYLLTDEDLELGKVIAEFIPEEEQSLEQV 302
Query: 303 TCVANDKLILSYIHHVKNVMHLHDLASGKHLYTFPLDV---GTIVGFSGKKKYSEIFYSF 359
DKL+ + +V + ++DL + +++ G + S K E+F +F
Sbjct: 303 VTT-KDKLVAGTLDNVSGRLEVYDLKGERIE---EVELPPPGALGMGSADKDGDEVFLAF 358
Query: 360 MSFLQPTIIFHCNIPARVDPNSKLETSIFREIKVPDFDPSLFETKQVFYPSKDGTKIPMF 419
SF P+ ++ + +LE + RE V FD +E +Q F SKDGT+IP F
Sbjct: 359 TSFTTPSTLYRLD-----LFGGELE--VIREQPV-QFDADNYEVEQFFATSKDGTRIPYF 410
Query: 420 ILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGER 479
I+ RKGA+ D NP +LY YGGF +SL P FS ++ ++L G++ + NIRGGGE+G
Sbjct: 411 IV-RKGAKKD-ENPTLLYAYGGFNISLTPRFSGSRKLWLER-GGVFVLANIRGGGEFGPE 467
Query: 480 WHDGGRLLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGA 539
WH G NKQNVFDDF AE LI G T +L IQGGSNGGLL A + QRP+LFGA
Sbjct: 468 WHQAGMKENKQNVFDDFIAVAEDLIKRGITSPEKLGIQGGSNGGLLVGAALTQRPELFGA 527
Query: 540 AIVQVGNPEISDCGRWLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDML 599
A+ +V +LDML
Sbjct: 528 AVCEVP-------------------------------------------------LLDML 538
Query: 600 KFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLHNIQGPDELKGKQYPATLLMTADHDDR 659
+++ T G W ++YG+P + +LL YSP HN++ G++YP TL+ T+ HDDR
Sbjct: 539 RYHLLTAGSSWIAEYGNPDDPEDRAFLLAYSPYHNLKP-----GQKYPPTLITTSLHDDR 593
Query: 660 VSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQ 705
V P H+ KFAA LQE P+L+R ETK GHGG PT +
Sbjct: 594 VHPAHARKFAAKLQE-------VGAPVLLREETKGGHGGAAPTAEI 632
Score = 124 bits (313), Expect = 3e-29
Identities = 49/111 (44%), Positives = 68/111 (61%), Gaps = 12/111 (10%)
Query: 764 VLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLHNIQGPNELKGKQYPATLLMTA 823
+LDML+++ T G W ++YG+P + +LL YSP HN++ G++YP TL+ T+
Sbjct: 534 LLDMLRYHLLTAGSSWIAEYGNPDDPEDRAFLLAYSPYHNLKP-----GQKYPPTLITTS 588
Query: 824 DHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQ 874
HDDRV P H+ KFAA LQE P+L+R ETK GHGG PT +
Sbjct: 589 LHDDRVHPAHARKFAAKLQE-------VGAPVLLREETKGGHGGAAPTAEI 632
Score = 92.1 bits (229), Expect = 4e-19
Identities = 42/101 (41%), Positives = 59/101 (58%), Gaps = 10/101 (9%)
Query: 898 TFMSFLQPTIIFHCNIPARVDPNSKLETSIFREIKVPDFDPSLFETKQVFYPSKDGTKIP 957
F SF P+ ++ + +LE + RE V FD +E +Q F SKDGT+IP
Sbjct: 357 AFTSFTTPSTLYRLD-----LFGGELE--VIREQPV-QFDADNYEVEQFFATSKDGTRIP 408
Query: 958 MFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFL 998
FI+ RKGA+ D NP +LY YGGF +SL P FS ++ ++L
Sbjct: 409 YFIV-RKGAKKD-ENPTLLYAYGGFNISLTPRFSGSRKLWL 447
>gnl|CDD|217275 pfam02897, Peptidase_S9_N, Prolyl oligopeptidase, N-terminal
beta-propeller domain. This unusual 7-stranded
beta-propeller domain protects the catalytic triad of
prolyl oligopeptidase (see pfam00326), excluding larger
peptides and proteins from proteolysis in the cytosol.
Length = 412
Score = 303 bits (777), Expect = 1e-93
Identities = 132/400 (33%), Positives = 198/400 (49%), Gaps = 66/400 (16%)
Query: 39 PKARKNESLVDEYHGVKIPDPYGWMEDPDSEETKKFVDEENAISRPYLE-DHPDRDKVKA 97
P R++E++VDEYHG + DPY W+ED DS E +V+ EN + +L P R+K+K
Sbjct: 1 PPTRRDETVVDEYHGDVVSDPYRWLEDDDSPEVLAWVEAENKYTEDFLAQLKPLREKIKE 60
Query: 98 ELTKMWDYPKYSSPQRQGDHYFFFHNTGLQNHSVMYIQDSLDGEA---RVFLDPNNLSDD 154
ELT + +Y S+P R+G +Y++F NTG +N SV+Y +D+ +G VFLDPN LS+D
Sbjct: 61 ELTALINYDDISAPFRKGGYYYYFRNTGGKNQSVLYRRDAGEGPGETEEVFLDPNTLSED 120
Query: 155 G--TVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVL------------ 200
G TV+L Y+FS DG+ LAY LS SGSDW ++ F+DV TG+ P+VL
Sbjct: 121 GDFTVALDGYAFSPDGRLLAYSLSLSGSDWYTIRFRDVETGEPLPDVLEGVKFSGIVWAP 180
Query: 201 --------------------------HRL------------------KFVSIAWTHDHKG 216
HRL ++ + D K
Sbjct: 181 DNKGFFYSRYDEPERGSTNLNQKVWRHRLGTPQSQDVLVFEEPDEPFWYLGAERSDDGKY 240
Query: 217 VFYSNQEPKSKSKKHSKKNRSSAYHLTVNVAPI---TSQYITNEGPQFVFKTNKDAPNYR 273
+F S+ ++ + V P Y+ +EG F F TN APN+R
Sbjct: 241 LFISSASGTDVNELYVLDLAQEKDGPLRKVVPRFDGVYYYVEHEGDTFYFLTNDGAPNFR 300
Query: 274 LITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLILSYIHHVKNVMHLHDLASGK-H 332
L+ +D ++ + ++WK +I E+++DVL V + L+LSY + + + DL G
Sbjct: 301 LVRVDLNDPSPADWKDVIVEHREDVLLEEITVFGNYLVLSYRRDALSRLQVFDLGGGGVL 360
Query: 333 LYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCN 372
F VG++ SG+ E+ YSF SFL P I+ +
Sbjct: 361 FEEFLPGVGSVSSASGEYDDDELRYSFSSFLTPGTIYDLD 400
Score = 34.6 bits (80), Expect = 0.26
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 13/51 (25%)
Query: 713 IYFYLTSGPVLQRYPETPNKADGSENVRNQDQKLYYHYLGTDQKDDILIAE 763
+FY RY E GS N +QK++ H LGT Q D+L+ E
Sbjct: 184 GFFYS-------RYDEPE---RGSTN---LNQKVWRHRLGTPQSQDVLVFE 221
>gnl|CDD|224684 COG1770, PtrB, Protease II [Amino acid transport and metabolism].
Length = 682
Score = 296 bits (760), Expect = 5e-88
Identities = 193/724 (26%), Positives = 309/724 (42%), Gaps = 137/724 (18%)
Query: 39 PKARKNESLVDEYHGVKIPDPYGWMEDPD--SEETKKFVDEENAISRPYLED-HPDRDKV 95
P A+K +HG D Y W+ D + + E +++ ENA + + P + K+
Sbjct: 7 PIAKK-VPTTRTHHGDTRVDDYAWLRDDNWSNPEVLAYLEAENAYTEAVMAHLQPLQKKI 65
Query: 96 KAELTKMWDYPKYSSPQRQGDHYFFFHNTGLQNHSVMYIQDSLDGEA--RVFLDPNNLSD 153
E+ K S + Y ++ T +Y + +G V LD N ++
Sbjct: 66 FEEI-KGRIKEDDLSVPYRKGPYEYYSRTEEGKEYPIYCRQPDEGGEGEEVLLDVNKEAE 124
Query: 154 DGT-VSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLHRLKFVSIAWTH 212
SLG+ S S D LAY + G + ++ FKD+ATG+E P+ + S AW
Sbjct: 125 GHDFFSLGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEELPDEITNTSG-SFAWAA 183
Query: 213 DHKGVFYSNQEPK---SKSKKHS-----------------------KKNRSSAYHLTVNV 246
D K +FY+ + K +H ++RS AY + +++
Sbjct: 184 DGKTLFYTRLDENHRPDKVWRHRLGTPGSSDELVYEEKDDRFFLSVGRSRSEAY-IVISL 242
Query: 247 AP-ITSQ-------------------------YITNEGPQFVFKTNKDAPNYRLITIDFD 280
ITS+ + + G +F +N D N++L+
Sbjct: 243 GSHITSEVRLLDADDPEAEPKVVLPRENGVEYSVEHGGDRFYILSNADGKNFKLVRAP-V 301
Query: 281 NFAESNWKTLIEENKDDVLDWATCVANDKLILSYIHHVKNVMHLHDLASGKHLYTFPLD- 339
+ +SNW+ LI +D L+ A D L+L + + D +G D
Sbjct: 302 SADKSNWRELIPHREDVRLEGVDLFA-DHLVLLERQEGLPRVVVRDRKTG-EERGIAFDD 359
Query: 340 --VGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNIPARVDPNSKLETSIFREIKVPD-F 396
+ + + + YS+ S P +F ++ E ++ ++ +VP F
Sbjct: 360 EAYSAGLSGNPEFDSDRLRYSYSSMTTPATLFDYDMATG-------ERTLLKQQEVPGGF 412
Query: 397 DPSLFETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIV 456
DP + +++++ + DG ++P+ ++ RK +LDG+ P +LYGYG + +S+ P FS +
Sbjct: 413 DPEDYVSRRIWATADDGVQVPVSLVYRKDTKLDGSAPLLLYGYGAYGISMDPSFS-IARL 471
Query: 457 FLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYTQSSRLAI 516
L D +YAI ++RGGGE G W++ G+LLNK+N F DF AA +L+ GYT R+
Sbjct: 472 SLLDRGFVYAIAHVRGGGELGRAWYEDGKLLNKKNTFTDFIAAARHLVKEGYTSPDRIVA 531
Query: 517 QGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGRWLIVHTMKDCKNNMFHFCD-LD 575
GGS GG+L A N PDLF I QV P F D L
Sbjct: 532 IGGSAGGMLMGAVANMAPDLFAGIIAQV--P-----------------------FVDVLT 566
Query: 576 TIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESD-YGSPANSSQFEYLLGYSPLHN 634
T+ D LPLT E D +G+P + ++Y+ YSP N
Sbjct: 567 TMLDP----SLPLTV-------------------TEWDEWGNPLDPEYYDYIKSYSPYDN 603
Query: 635 IQGPDELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKA 694
+ + + YPA L+ T +D RV K+ A KLR+ NPLL++ A
Sbjct: 604 V------EAQPYPAILVTTGLNDPRVQYWEPAKWVA----KLRELKTDGNPLLLKTNMDA 653
Query: 695 GHGG 698
GHGG
Sbjct: 654 GHGG 657
Score = 69.6 bits (171), Expect = 4e-12
Identities = 23/60 (38%), Positives = 41/60 (68%), Gaps = 1/60 (1%)
Query: 933 VPD-FDPSLFETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFS 991
VP FDP + +++++ + DG ++P+ ++ RK +LDG+ P +LYGYG + +S+ P FS
Sbjct: 408 VPGGFDPEDYVSRRIWATADDGVQVPVSLVYRKDTKLDGSAPLLLYGYGAYGISMDPSFS 467
Score = 59.6 bits (145), Expect = 7e-09
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 11/90 (12%)
Query: 779 WESD-YGSPANSSQFEYLLGYSPLHNIQGPNELKGKQYPATLLMTADHDDRVSPVHSLKF 837
E D +G+P + ++Y+ YSP N+ + + YPA L+ T +D RV K+
Sbjct: 578 TEWDEWGNPLDPEYYDYIKSYSPYDNV------EAQPYPAILVTTGLNDPRVQYWEPAKW 631
Query: 838 AATLQEKLRDYPHQTNPLLIRIETKAGHGG 867
A KLR+ NPLL++ AGHGG
Sbjct: 632 VA----KLRELKTDGNPLLLKTNMDAGHGG 657
>gnl|CDD|215859 pfam00326, Peptidase_S9, Prolyl oligopeptidase family.
Length = 212
Score = 192 bits (491), Expect = 4e-56
Identities = 92/260 (35%), Positives = 114/260 (43%), Gaps = 67/260 (25%)
Query: 448 PGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASG 507
P FS + L D + A+ N RG G YG WHD G+ QN FDDF AAEYLIA G
Sbjct: 1 PSFS-WNLQLLADRGYVVAVANGRGSGGYGRAWHDAGKGDLGQNEFDDFIAAAEYLIAQG 59
Query: 508 YTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGRWLIVHTMKDCKNN 567
Y RLAI GGS GG LT A +NQRPDLF AA+ V
Sbjct: 60 YVDPDRLAIWGGSYGGYLTGAALNQRPDLFKAAVAVVP---------------------- 97
Query: 568 MFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWE-SDYGSPANSSQ-FEY 625
V+D L + T + ++G+P ++ + + Y
Sbjct: 98 ---------------------------VVDWLTYMSDTSPFTERYMEWGNPWDNEEGYRY 130
Query: 626 LLGYSPLHNIQGPDELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNP 685
L YSP N+ K YP LL+ HDDRV P +LK A LQ K
Sbjct: 131 LSPYSPYDNV--------KAYPPLLLIHGLHDDRVPPAEALKLVAALQAK-------GKN 175
Query: 686 LLIRIETKAGHGGGKPTTKQ 705
+L+ I GHGGGKP K+
Sbjct: 176 VLLLIFPDEGHGGGKPRNKR 195
Score = 86.9 bits (216), Expect = 4e-19
Identities = 40/121 (33%), Positives = 58/121 (47%), Gaps = 17/121 (14%)
Query: 756 KDDILIAEVLDMLKFNKFTIGYFWE-SDYGSPANSSQ-FEYLLGYSPLHNIQGPNELKGK 813
K + + V+D L + T + ++G+P ++ + + YL YSP N+ K
Sbjct: 90 KAAVAVVPVVDWLTYMSDTSPFTERYMEWGNPWDNEEGYRYLSPYSPYDNV--------K 141
Query: 814 QYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTK 873
YP LL+ HDDRV P +LK A LQ K +L+ I GHGGGKP K
Sbjct: 142 AYPPLLLIHGLHDDRVPPAEALKLVAALQAK-------GKNVLLLIFPDEGHGGGKPRNK 194
Query: 874 Q 874
+
Sbjct: 195 R 195
>gnl|CDD|182247 PRK10115, PRK10115, protease 2; Provisional.
Length = 686
Score = 154 bits (391), Expect = 9e-39
Identities = 101/358 (28%), Positives = 171/358 (47%), Gaps = 66/358 (18%)
Query: 342 TIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNIPARVDPNSKLETSIFREIKVPDFDPSLF 401
T + ++ + + S + Y + S P +F ++ E + ++ +VP FD + +
Sbjct: 362 TWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTG-------ERRVLKQTEVPGFDAANY 414
Query: 402 ETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFL-RD 460
++ ++ ++DG ++P+ ++ + G+NP ++YGYG + S+ FS +++ L R
Sbjct: 415 RSEHLWITARDGVEVPVSLVYHRKHFRKGHNPLLVYGYGSYGASIDADFSFSRLSLLDRG 474
Query: 461 FNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGS 520
F +YAI ++RGGGE G++W++ G+ L K+N F+D+ A + L+ GY S GGS
Sbjct: 475 F--VYAIVHVRGGGELGQQWYEDGKFLKKKNTFNDYLDACDALLKLGYGSPSLCYGMGGS 532
Query: 521 NGGLLTAACINQRPDLFGAAIVQVGNPEISDCGRWLIVHTMKDCKNNMFHFCDLDTIPDR 580
GG+L INQRP+LF I QV P + +V TM D ++IP
Sbjct: 533 AGGMLMGVAINQRPELFHGVIAQV--PFVD------VVTTMLD-----------ESIP-- 571
Query: 581 KIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLHNIQGPDE 640
T G F E +G+P + +EY+ YSP N+
Sbjct: 572 -----------------------LTTGEFEE--WGNPQDPQYYEYMKSYSPYDNV----- 601
Query: 641 LKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGG 698
+ YP L+ T HD +V K+ A KLR+ + LL+ + +GHGG
Sbjct: 602 -TAQAYPHLLVTTGLHDSQVQYWEPAKWVA----KLRELKTDDHLLLLCTDMDSGHGG 654
Score = 49.1 bits (117), Expect = 1e-05
Identities = 19/75 (25%), Positives = 45/75 (60%)
Query: 924 ETSIFREIKVPDFDPSLFETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFA 983
E + ++ +VP FD + + ++ ++ ++DG ++P+ ++ + G+NP ++YGYG +
Sbjct: 397 ERRVLKQTEVPGFDAANYRSEHLWITARDGVEVPVSLVYHRKHFRKGHNPLLVYGYGSYG 456
Query: 984 VSLQPGFSVTKIVFL 998
S+ FS +++ L
Sbjct: 457 ASIDADFSFSRLSLL 471
Score = 46.0 bits (109), Expect = 1e-04
Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 12/95 (12%)
Query: 773 FTIGYFWESDYGSPANSSQFEYLLGYSPLHNIQGPNELKGKQYPATLLMTADHDDRVSPV 832
T G F E +G+P + +EY+ YSP N+ + YP L+ T HD +V
Sbjct: 572 LTTGEFEE--WGNPQDPQYYEYMKSYSPYDNV------TAQAYPHLLVTTGLHDSQVQYW 623
Query: 833 HSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGG 867
K+ A KLR+ + LL+ + +GHGG
Sbjct: 624 EPAKWVA----KLRELKTDDHLLLLCTDMDSGHGG 654
Score = 32.2 bits (73), Expect = 1.8
Identities = 40/197 (20%), Positives = 80/197 (40%), Gaps = 13/197 (6%)
Query: 39 PKARKNESLVDEYHGVKIPDPYGWMEDPDSE---ETKKFVDEENAISRPYLEDHPD-RDK 94
PKA + + + +I D Y W+ D D+ E ++ +EN+ + +D+
Sbjct: 3 PKAARIPHAMTLHGDTRI-DNYYWLRD-DTRSQPEVLDYLHQENSYGHRVMASQQALQDR 60
Query: 95 VKAELTKMWDYPKYSSP-QRQGDHYFFFHNTGLQNHSVMYIQDSLDGEA---RVFLDPNN 150
+ E+ + S+P + G Y + G + +++ Q + E LD N
Sbjct: 61 ILKEIIDRIPQREVSAPYIKNGYRYRHIYEPGCE-YAIYQRQSAFSEEWDEWETLLDANK 119
Query: 151 LSDDGTV-SLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLHRLKFVSIA 209
+ +LG + + D +A + F+++ TG YPE+L ++ S
Sbjct: 120 RAAHSEFYTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE-PSFV 178
Query: 210 WTHDHKGVFYSNQEPKS 226
W +D +Y + P +
Sbjct: 179 WANDSWTFYYVRKHPVT 195
>gnl|CDD|224423 COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases
[Amino acid transport and metabolism].
Length = 620
Score = 81.0 bits (200), Expect = 1e-15
Identities = 92/511 (18%), Positives = 145/511 (28%), Gaps = 108/511 (21%)
Query: 193 GKEYPEVLHRLKFVSIAWTHDHKGVFYSN--QEPKSKSKKHSKKNRSS--AYHLTVNVAP 248
K L L VS A D + V + + LT
Sbjct: 158 SKLIKLGLGNLDVVSFATDGDGRLVASIRLDDDADPWVTNLYVLIEGNGELESLTPGEGS 217
Query: 249 ITSQYITNEGPQFVFKTNKDAPN---------YRLITIDFDNFAESNWKT----LIEENK 295
I+ +G + + D S T +E
Sbjct: 218 ISKLAFDADGKSIALLGTESDRGLAEGDFILLLDGELGEVDGDLSSGDDTRGAWAVEGGL 277
Query: 296 DDVLDWATCVANDKLILSYIHHVKNVMHLHDLASGKHLYTFPLDVGTIVGFSGKKKYSEI 355
D D +A D S + V ++ + SG D G + GF + +
Sbjct: 278 DG--DGLLFIATDGGGSSPLFRVDDLGGGVEGLSG--------DDGGVPGFDVDGRK--L 325
Query: 356 FYSFMSFLQPTIIFHCNIPARVDPNSKLETSIFREIKVPDFDPSLFETKQVFYPSKDGTK 415
++ S +P I+ D + + + + + E V Y S DG
Sbjct: 326 ALAYSSPTEPPEIY------LYDRGEEAKLTSSNNSGLKKVKLAEPEP--VTYKSNDGET 377
Query: 416 IPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFL-RDFNGIYAIPNIRGGG 474
I ++ G P I+Y +GG + + F+ V + + PN RG
Sbjct: 378 IHGWLYKPPGFDPRKKYPLIVYIHGGPSAQVGYSFNPEIQVLASAGYAVLA--PNYRGST 435
Query: 475 EYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRP 534
YG + D R +D A + L+ R+ I GGS GG +T + P
Sbjct: 436 GYGREFADAIRGDWGGVDLEDLIAAVDALVKLPLVDPERIGITGGSYGGYMTLLAATKTP 495
Query: 535 DLFGAAIVQVGNPEISDCGRWLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHK 594
A V G
Sbjct: 496 RFKAAVAVAGG------------------------------------------------- 506
Query: 595 VLDMLKFNKFTIGYF---WESDYGSPANSSQFEYLLGYSPL---HNIQGPDELKGKQYPA 648
V +L F + T G E+ G P + E SP+ NI+ P
Sbjct: 507 VDWLLYFGESTEGLRFDPEENGGGPPED---REKYEDRSPIFYADNIKTP---------- 553
Query: 649 TLLMTADHDDRVSPVHSLKFAATLQEKLRDY 679
LL+ + DDRV + + L+ K +
Sbjct: 554 LLLIHGEEDDRVPIEQAEQLVDALKRKGKPV 584
Score = 37.9 bits (88), Expect = 0.032
Identities = 21/89 (23%), Positives = 33/89 (37%), Gaps = 19/89 (21%)
Query: 766 DMLKFNKFTIGYF---WESDYGSPANSSQFEYLLGYSPL---HNIQGPNELKGKQYPATL 819
+L F + T G E+ G P + E SP+ NI+ P L
Sbjct: 509 WLLYFGESTEGLRFDPEENGGGPPED---REKYEDRSPIFYADNIKTP----------LL 555
Query: 820 LMTADHDDRVSPVHSLKFAATLQEKLRDY 848
L+ + DDRV + + L+ K +
Sbjct: 556 LIHGEEDDRVPIEQAEQLVDALKRKGKPV 584
>gnl|CDD|223489 COG0412, COG0412, Dienelactone hydrolase and related enzymes
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 236
Score = 34.7 bits (80), Expect = 0.20
Identities = 12/51 (23%), Positives = 18/51 (35%)
Query: 491 NVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAI 541
V D A +YL R+ + G GG L + P++ A
Sbjct: 91 EVLADIDAALDYLARQPQVDPKRIGVVGFCMGGGLALLAATRAPEVKAAVA 141
>gnl|CDD|225989 COG3458, COG3458, Acetyl esterase (deacetylase) [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 321
Score = 34.0 bits (78), Expect = 0.36
Identities = 41/190 (21%), Positives = 63/190 (33%), Gaps = 41/190 (21%)
Query: 394 PDFDPSLFETKQV-----FYPSKDGTKI-PMFILSRKGAQLDGNNPCIL--YGYGGFAVS 445
P + S F +V + G +I +L R G P ++ +GYGG
Sbjct: 42 PVLERSDFTLPRVEVYDVTFTGYGGARIKGWLVLPRHE---KGKLPAVVQFHGYGG---- 94
Query: 446 LQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGER------------WHDGGRLLNKQN-- 491
G ++ + ++RG G + + G L K
Sbjct: 95 --RGGEWHDMLHWAVAGYAVFVMDVRGQGSSSQDTADPPGGPSDPGFMTRGILDRKDTYY 152
Query: 492 ---VFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAAC--INQRPDLFGAAIVQVGN 546
VF D A E L + R+ + GGS GG L A ++ R A
Sbjct: 153 YRGVFLDAVRAVEILASLDEVDEERIGVTGGSQGGGLALAAAALDPRIKA-VVADY---- 207
Query: 547 PEISDCGRWL 556
P +SD R +
Sbjct: 208 PFLSDFPRAI 217
>gnl|CDD|234920 PRK01212, PRK01212, homoserine kinase; Provisional.
Length = 301
Score = 34.0 bits (79), Expect = 0.38
Identities = 28/117 (23%), Positives = 37/117 (31%), Gaps = 43/117 (36%)
Query: 433 PCILYGYGGFAVSLQ-PGFSVTKIVFLRDFNGIYAIPNI-------RGGGEYGERWHDGG 484
P +L GG ++L+ G KI D + AIPNI R
Sbjct: 139 PALL---GGLVLALEENGVISVKIPVFDDLKWVVAIPNIELSTAEAR------------- 182
Query: 485 RLLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAI 541
+L KQ D A+ S LL AA +L G A+
Sbjct: 183 AVLPKQYSLKD-------------------AVFNSSRAALLVAALYTGDYELAGRAM 220
>gnl|CDD|226584 COG4099, COG4099, Predicted peptidase [General function prediction
only].
Length = 387
Score = 34.1 bits (78), Expect = 0.40
Identities = 28/113 (24%), Positives = 43/113 (38%), Gaps = 15/113 (13%)
Query: 499 AAEYLIASGYT-QSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGRW-- 555
++AS Y SR+ + G S GG T A + PD F AA+ G
Sbjct: 255 LILEVLASTYNIDRSRIYVIGLSRGGFGTWALAEKFPDFFAAAVPI--------AGGGDR 306
Query: 556 -LIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIG 607
+V T+K +FH D IP + L + + + + + F G
Sbjct: 307 VYLVRTLKKAPIWVFHSSDDKVIP---VSNSRVLYERLKALDRKVNYTAFLEG 356
>gnl|CDD|223477 COG0400, COG0400, Predicted esterase [General function prediction
only].
Length = 207
Score = 33.0 bits (76), Expect = 0.47
Identities = 31/120 (25%), Positives = 42/120 (35%), Gaps = 17/120 (14%)
Query: 431 NNPCI--LYGYGGFAVSLQPG----FSVTKIVFLRDFNGIYAIPNIRGG-GEYGERWHDG 483
P + L+G GG + L P +V R G A Y E D
Sbjct: 17 AAPLLILLHGLGGDELDLVPLPELILPNATLVSPR---GPVAENGGPRFFRRYDEGSFDQ 73
Query: 484 GRLLNKQNVFDDF--QCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAI 541
L + +F + A EY I S SR+ + G S G + + P LF AI
Sbjct: 74 EDLDLETEKLAEFLEELAEEYGIDS-----SRIILIGFSQGANIALSLGLTLPGLFAGAI 128
>gnl|CDD|234019 TIGR02800, propeller_TolB, tol-pal system beta propeller repeat
protein TolB. Members of this protein family are the
TolB periplasmic protein of Gram-negative bacteria. TolB
is part of the Tol-Pal (peptidoglycan-associated
lipoprotein) multiprotein complex, comprising five
envelope proteins, TolQ, TolR, TolA, TolB and Pal, which
form two complexes. The TolQ, TolR and TolA
inner-membrane proteins interact via their transmembrane
domains. The {beta}-propeller domain of the periplasmic
protein TolB is responsible for its interaction with
Pal. TolB also interacts with the outer-membrane
peptidoglycan-associated proteins Lpp and OmpA. TolA
undergoes a conformational change in response to changes
in the proton-motive force, and interacts with Pal in an
energy-dependent manner. The C-terminal periplasmic
domain of TolA also interacts with the N-terminal domain
of TolB. The Tol-PAL system is required for bacterial
outer membrane integrity. E. coli TolB is involved in
the tonB-independent uptake of group A colicins
(colicins A, E1, E2, E3 and K), and is necessary for the
colicins to reach their respective targets after initial
binding to the bacteria. It is also involved in uptake
of filamentous DNA. Study of its structure suggest that
the TolB protein might be involved in the recycling of
peptidoglycan or in its covalent linking with
lipoproteins. The Tol-Pal system is also implicated in
pathogenesis of E. coli, Haemophilus ducreyi ,
Salmonella enterica and Vibrio cholerae, but the
mechanism(s) is unclear [Transport and binding proteins,
Other, Cellular processes, Pathogenesis].
Length = 417
Score = 33.0 bits (76), Expect = 0.94
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 7/52 (13%)
Query: 129 HSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGS 180
+Y+QD G+ ++ G+ +FS DG LA LS G+
Sbjct: 213 KPEIYVQDLATGQREKVASFPGMN-------GAPAFSPDGSKLAVSLSKDGN 257
>gnl|CDD|130475 TIGR01408, Ube1, ubiquitin-activating enzyme E1. This model
represents the full length, over a thousand amino acids,
of a multicopy family of eukaryotic proteins, many of
which are designated ubiquitin-activating enzyme E1.
Members have two copies of the ThiF family domain
(pfam00899), a repeat found in ubiquitin-activating
proteins (pfam02134), and other regions.
Length = 1008
Score = 32.2 bits (73), Expect = 1.7
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 13/79 (16%)
Query: 333 LYTFPLDVGTIVG---FSGKK------KYSEIFYSFMSFLQPTIIFHCN---IP-ARVDP 379
L+ FPLD+ T G +S K K+ +SF+Q + IP A D
Sbjct: 678 LHCFPLDIRTSTGSPFWSSPKRPPSPLKFDLNEPLHLSFIQAAAKLYATVYGIPFAEEDL 737
Query: 380 NSKLETSIFREIKVPDFDP 398
++ +I E+K+P+F P
Sbjct: 738 SADALLNILSEVKIPEFKP 756
>gnl|CDD|235312 PRK04792, tolB, translocation protein TolB; Provisional.
Length = 448
Score = 31.5 bits (72), Expect = 2.4
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 160 GSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLHRLKFVSIAWTHDHKGVFY 219
G+ FS DGK LA LS G ++ D+AT HR +W D K + +
Sbjct: 265 GAPRFSPDGKKLALVLSKDGQ--PEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIF 322
Query: 220 S 220
+
Sbjct: 323 T 323
>gnl|CDD|226040 COG3509, LpqC, Poly(3-hydroxybutyrate) depolymerase [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 312
Score = 31.3 bits (71), Expect = 2.5
Identities = 17/86 (19%), Positives = 26/86 (30%), Gaps = 16/86 (18%)
Query: 474 GEYGERWHDGGRLLNKQNVFD------------DFQCAAEYLIASGYTQSSRLAIQGGSN 521
Y W+ G N F + L+ +R+ + G SN
Sbjct: 98 DGYDRAWNANGCG----NWFGPADRRRGVDDVGFLRALVAKLVNEYGIDPARVYVTGLSN 153
Query: 522 GGLLTAACINQRPDLFGAAIVQVGNP 547
GG + + PD+F A G
Sbjct: 154 GGRMANRLACEYPDIFAAIAPVAGLL 179
>gnl|CDD|225375 COG2819, COG2819, Predicted hydrolase of the alpha/beta superfamily
[General function prediction only].
Length = 264
Score = 30.8 bits (70), Expect = 2.9
Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 503 LIASGY-TQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIV 542
I + Y T S R AI G S GGL + PD FG +
Sbjct: 127 FIEARYRTNSERTAIIGHSLGGLFVLFALLTYPDCFGRYGL 167
>gnl|CDD|223036 PHA03295, PHA03295, envelope glycoprotein H; Provisional.
Length = 714
Score = 30.8 bits (70), Expect = 4.0
Identities = 17/61 (27%), Positives = 22/61 (36%), Gaps = 5/61 (8%)
Query: 747 YYHYLGT-DQKDDILIAEVLD----MLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPL 801
Y +L D DD L LD + FN+ I E G P + E + Y L
Sbjct: 263 RYPFLKDQDFLDDTLSGNYLDLSALLRVFNRLAIQVLLEGLCGKPLDRDTVEMMFLYGLL 322
Query: 802 H 802
Sbjct: 323 L 323
>gnl|CDD|188883 cd08541, SAM_PNT-FLI-1, Sterile alpha motif (SAM)/Pointed domain of
friend leukemia integration 1 transcription activator.
SAM Pointed domain of FLI-1 (Friend Leukemia
Integration) subfamily of ETS transcriptional regulators
is a putative protein-protein interaction domain. The
FLI-1 protein participates in regulation of cellular
differentiation, proliferation, and survival. The Fli-1
gene was initially described in Friend virus-induced
erythroleukemias as a site for virus integration. It is
highly expressed in hematopoietic tissues and at lower
level in lungs, heart, and ovaries. Fli-1 is a
proto-oncogene implicated in Ewing's sarcoma and
erythroleukemia. Members of this subfamily are potential
targets for cancer therapy.
Length = 91
Score = 28.9 bits (64), Expect = 4.1
Identities = 14/48 (29%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 272 YRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLILSYIHHVK 319
Y L+ ID F + K L + +K+D L T + N +++LS++++++
Sbjct: 36 YGLMEIDTSLFQNMDGKELCKMSKEDFLR-LTSLYNTEVLLSHLNYLR 82
>gnl|CDD|216989 pfam02354, Latrophilin, Latrophilin Cytoplasmic C-terminal region.
This family consists of the cytoplasmic C-terminal
region in latrophilin. Latrophilin is a synaptic Ca2+
independent alpha- latrotoxin (LTX) receptor and is a
novel member of the secretin family of G-protein coupled
receptors that are involved in secretion. Latrophilin
mRNA is present only in neuronal tissue. Lactrophillin
interacts with G-alpha O.
Length = 366
Score = 30.0 bits (67), Expect = 6.1
Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 3/62 (4%)
Query: 57 PDPYGWMEDPDSEETKKFVDEENAISRPYLEDHPDRDKVKAELTKMWDYPKY--SSPQRQ 114
P Y + + ++ F A L+ P RD + + + D P Y SSP Q
Sbjct: 240 PRVYSTLYQYTQDHSESFFPLLTAEHTEDLQS-PHRDSLYTSMPNLRDSPTYPSSSPSTQ 298
Query: 115 GD 116
+
Sbjct: 299 TE 300
>gnl|CDD|235143 PRK03629, tolB, translocation protein TolB; Provisional.
Length = 429
Score = 30.1 bits (68), Expect = 6.4
Identities = 14/35 (40%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
Query: 160 GSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGK 194
G+ +FS DG LA+ LS +GS +++ D+A+G+
Sbjct: 246 GAPAFSPDGSKLAFALSKTGS--LNLYVMDLASGQ 278
>gnl|CDD|183641 PRK12637, flgE, flagellar hook protein FlgE; Provisional.
Length = 473
Score = 29.7 bits (66), Expect = 9.0
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 123 NTGLQNHSVMYIQDSLDGEARVFLDPNNL-SDDGTVSLG--SYSFSEDGKTLAY 173
N Q S +Q +L+ A+V +DPN+ + DGTV L +Y F+ G T A+
Sbjct: 138 NIAPQATSTAGLQTNLNANAKV-IDPNDTPAVDGTVELDGTTYRFTNAGGTFAW 190
>gnl|CDD|236436 PRK09263, PRK09263, anaerobic ribonucleoside triphosphate reductase;
Provisional.
Length = 711
Score = 29.8 bits (68), Expect = 9.2
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 8/49 (16%)
Query: 964 KGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGKEKS-SLSY 1011
KGA+ P ILY YG F V L+ V ++ F + SL Y
Sbjct: 451 KGAKPR-VAP-ILYMYGAFGVRLKADDDVDEL-----FKNGRATISLGY 492
Score = 29.8 bits (68), Expect = 10.0
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 7/43 (16%)
Query: 424 KGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYA 466
KGA+ P ILY YG F V L+ V ++ F A
Sbjct: 451 KGAKPR-VAP-ILYMYGAFGVRLKADDDVDEL-----FKNGRA 486
>gnl|CDD|223640 COG0566, SpoU, rRNA methylases [Translation, ribosomal structure
and biogenesis].
Length = 260
Score = 29.2 bits (66), Expect = 9.7
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 876 CVRYMMGGHFTVEFIRSVTTIRTFMSFLQ 904
+R G F V IR RT + L+
Sbjct: 152 VIRASAGAAFHVPVIRVTNLARTLLELLK 180
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.137 0.417
Gapped
Lambda K H
0.267 0.0716 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 51,918,813
Number of extensions: 5152651
Number of successful extensions: 3869
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3834
Number of HSP's successfully gapped: 51
Length of query: 1012
Length of database: 10,937,602
Length adjustment: 107
Effective length of query: 905
Effective length of database: 6,191,724
Effective search space: 5603510220
Effective search space used: 5603510220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (28.5 bits)