BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy12882
         (325 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2YZA|A Chain A, Crystal Structure Of Kinase Domain Of Human
           5'-Amp-Activated Protein Kinase Alpha-2 Subunit Mutant
           (T172d)
 pdb|3AQV|A Chain A, Human Amp-Activated Protein Kinase Alpha 2 Subunit Kinase
           Domain (T172d) Complexed With Compound C
          Length = 276

 Score = 27.7 bits (60), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 25/105 (23%), Positives = 46/105 (43%), Gaps = 10/105 (9%)

Query: 202 NNLTIASIMMLKFITHRCTHAQYIAKTDDDIYFNVHKLYSILTSPKFKRE----KVVLAG 257
           + L + +   +K   H+ T  +   K       N  K+ S+    K KRE    K+    
Sbjct: 17  DTLGVGTFGKVKIGEHQLTGHKVAVKI-----LNRQKIRSLDVVGKIKREIQNLKLFRHP 71

Query: 258 FLIRKGRVIRTPTEKWYTPEYMFSGDVYPDYLSGIAYIMSFKVAR 302
            +I+  +VI TPT+ +   EY+  G+++ DY+     +   +  R
Sbjct: 72  HIIKLYQVISTPTDFFMVMEYVSGGELF-DYICKHGRVEEMEARR 115


>pdb|2H6D|A Chain A, Protein Kinase Domain Of The Human 5'-Amp-Activated
           Protein Kinase Catalytic Subunit Alpha-2 (Ampk Alpha-2
           Chain)
          Length = 276

 Score = 27.7 bits (60), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 25/105 (23%), Positives = 46/105 (43%), Gaps = 10/105 (9%)

Query: 202 NNLTIASIMMLKFITHRCTHAQYIAKTDDDIYFNVHKLYSILTSPKFKRE----KVVLAG 257
           + L + +   +K   H+ T  +   K       N  K+ S+    K KRE    K+    
Sbjct: 17  DTLGVGTFGKVKIGEHQLTGHKVAVKI-----LNRQKIRSLDVVGKIKREIQNLKLFRHP 71

Query: 258 FLIRKGRVIRTPTEKWYTPEYMFSGDVYPDYLSGIAYIMSFKVAR 302
            +I+  +VI TPT+ +   EY+  G+++ DY+     +   +  R
Sbjct: 72  HIIKLYQVISTPTDFFMVMEYVSGGELF-DYICKHGRVEEMEARR 115


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.138    0.418 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,333,853
Number of Sequences: 62578
Number of extensions: 364539
Number of successful extensions: 1067
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1066
Number of HSP's gapped (non-prelim): 4
length of query: 325
length of database: 14,973,337
effective HSP length: 99
effective length of query: 226
effective length of database: 8,778,115
effective search space: 1983853990
effective search space used: 1983853990
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)