Query psy12882
Match_columns 325
No_of_seqs 237 out of 1311
Neff 6.2
Searched_HMMs 46136
Date Fri Aug 16 22:11:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12882.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12882hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2287|consensus 100.0 5.4E-56 1.2E-60 431.8 18.4 208 62-325 80-290 (349)
2 PLN03133 beta-1,3-galactosyltr 100.0 7.1E-53 1.5E-57 431.4 18.6 200 64-324 373-578 (636)
3 PF01762 Galactosyl_T: Galacto 100.0 1.2E-51 2.6E-56 369.4 12.3 180 91-325 1-183 (195)
4 PLN03193 beta-1,3-galactosyltr 100.0 1.7E-48 3.7E-53 380.2 18.9 190 75-324 137-338 (408)
5 KOG2288|consensus 100.0 2.1E-32 4.6E-37 250.9 14.9 188 75-322 9-207 (274)
6 PTZ00210 UDP-GlcNAc-dependent 100.0 8.6E-33 1.9E-37 266.9 12.2 166 71-308 74-268 (382)
7 PF02434 Fringe: Fringe-like; 99.4 3.1E-13 6.8E-18 126.5 8.5 159 78-308 7-167 (252)
8 KOG2246|consensus 99.2 2.2E-10 4.8E-15 112.6 15.2 146 75-311 89-237 (364)
9 PLN03153 hypothetical protein; 98.6 3E-06 6.5E-11 86.1 18.8 75 216-307 205-280 (537)
10 PF01755 Glyco_transf_25: Glyc 95.6 0.29 6.2E-06 43.4 12.8 29 289-318 170-198 (200)
11 KOG3708|consensus 95.5 0.037 8.1E-07 56.6 6.9 76 209-308 84-161 (681)
12 cd06532 Glyco_transf_25 Glycos 93.1 1.6 3.5E-05 36.3 10.8 52 205-310 68-119 (128)
13 cd06433 GT_2_WfgS_like WfgS an 88.9 1.2 2.5E-05 37.9 6.1 93 210-304 65-157 (202)
14 cd06423 CESA_like CESA_like is 86.3 16 0.00034 29.4 11.4 94 210-304 68-169 (180)
15 PF13641 Glyco_tranf_2_3: Glyc 83.6 13 0.00028 32.8 10.2 93 210-305 76-175 (228)
16 PF00535 Glycos_transf_2: Glyc 83.6 13 0.00027 30.1 9.5 92 211-304 69-168 (169)
17 cd04192 GT_2_like_e Subfamily 81.2 36 0.00077 29.5 13.1 90 211-304 73-170 (229)
18 cd04186 GT_2_like_c Subfamily 78.7 34 0.00073 27.8 11.2 24 221-244 74-97 (166)
19 cd04196 GT_2_like_d Subfamily 75.7 51 0.0011 28.2 12.7 88 216-305 75-168 (214)
20 cd06434 GT2_HAS Hyaluronan syn 71.8 26 0.00056 30.9 8.6 27 221-247 77-103 (235)
21 cd02520 Glucosylceramide_synth 69.5 15 0.00033 31.9 6.5 62 212-304 78-139 (196)
22 cd02526 GT2_RfbF_like RfbF is 67.3 26 0.00056 30.9 7.6 31 211-243 67-97 (237)
23 TIGR03472 HpnI hopanoid biosyn 65.5 80 0.0017 30.9 11.2 94 206-304 113-215 (373)
24 cd06421 CESA_CelA_like CESA_Ce 62.8 4.3 9.2E-05 35.8 1.6 105 213-321 77-189 (234)
25 TIGR01556 rhamnosyltran L-rham 62.7 22 0.00047 32.9 6.4 32 211-244 65-96 (281)
26 TIGR03469 HonB hopene-associat 61.1 1.7E+02 0.0037 28.7 15.5 35 210-244 122-156 (384)
27 cd06420 GT2_Chondriotin_Pol_N 55.9 34 0.00073 28.7 6.0 35 211-246 70-104 (182)
28 KOG2336|consensus 55.1 11 0.00025 36.5 3.0 37 65-104 172-215 (422)
29 PF13632 Glyco_trans_2_3: Glyc 54.2 18 0.0004 31.1 4.1 93 224-321 1-102 (193)
30 cd02525 Succinoglycan_BP_ExoA 53.4 1.5E+02 0.0034 25.8 12.4 33 211-244 72-104 (249)
31 cd04185 GT_2_like_b Subfamily 53.1 1.5E+02 0.0032 25.4 12.8 34 210-245 70-103 (202)
32 COG1216 Predicted glycosyltran 51.8 56 0.0012 30.9 7.3 106 210-320 75-197 (305)
33 cd04187 DPM1_like_bac Bacteria 51.8 75 0.0016 26.8 7.5 94 210-306 70-164 (181)
34 cd02510 pp-GalNAc-T pp-GalNAc- 47.3 2.4E+02 0.0052 26.2 13.1 32 212-244 75-106 (299)
35 TIGR03111 glyc2_xrt_Gpos1 puta 45.8 1.3E+02 0.0028 30.2 9.2 35 210-245 121-155 (439)
36 cd04184 GT2_RfbC_Mx_like Myxoc 42.7 35 0.00076 29.2 4.0 35 211-246 74-108 (202)
37 PF03452 Anp1: Anp1; InterPro 41.4 1.5E+02 0.0033 28.4 8.3 28 220-247 141-168 (269)
38 PF05412 Peptidase_C33: Equine 40.1 18 0.00039 29.8 1.6 29 206-234 48-81 (108)
39 PF14851 FAM176: FAM176 family 39.0 1E+02 0.0022 27.1 6.2 24 81-104 110-140 (153)
40 cd06438 EpsO_like EpsO protein 38.5 17 0.00036 31.2 1.3 76 221-303 81-169 (183)
41 cd06427 CESA_like_2 CESA_like_ 37.8 18 0.00038 32.6 1.4 36 210-246 74-109 (241)
42 cd00761 Glyco_tranf_GTA_type G 35.2 2.1E+02 0.0045 22.0 12.1 32 211-243 68-99 (156)
43 cd04179 DPM_DPG-synthase_like 32.0 54 0.0012 27.4 3.4 93 211-305 70-167 (185)
44 cd02514 GT13_GLCNAC-TI GT13_GL 32.0 1E+02 0.0022 30.4 5.7 91 211-318 88-185 (334)
45 COG4092 Predicted glycosyltran 29.4 1E+02 0.0022 29.9 4.9 75 168-243 40-116 (346)
46 cd06442 DPM1_like DPM1_like re 27.9 59 0.0013 28.2 3.0 88 212-305 70-167 (224)
47 PRK11204 N-glycosyltransferase 22.8 7.2E+02 0.016 24.3 12.9 59 181-245 100-158 (420)
48 PLN02726 dolichyl-phosphate be 22.8 49 0.0011 29.9 1.6 92 211-306 84-183 (243)
49 PF08525 OapA_N: Opacity-assoc 22.6 1.2E+02 0.0027 19.1 2.9 26 1-27 3-28 (30)
50 cd02522 GT_2_like_a GT_2_like_ 22.2 3.7E+02 0.008 23.0 7.1 30 215-245 67-96 (221)
51 PRK10714 undecaprenyl phosphat 21.7 7.2E+02 0.016 23.8 11.1 91 212-306 82-174 (325)
52 PF13506 Glyco_transf_21: Glyc 20.6 2.1E+02 0.0045 25.0 5.1 94 206-304 17-116 (175)
53 cd04195 GT2_AmsE_like GT2_AmsE 20.4 5.2E+02 0.011 21.7 8.8 34 211-245 71-104 (201)
No 1
>KOG2287|consensus
Probab=100.00 E-value=5.4e-56 Score=431.83 Aligned_cols=208 Identities=34% Similarity=0.584 Sum_probs=189.8
Q ss_pred CceeeeCCCCCCCCCceEEEEEEcCCCCHHHHHHHHHHhhccC---CCceEEEEEeccCCCccchhhhhhhhhccCCCch
Q psy12882 62 ETVLMCGALVCPPTPLTLLIVVSSAVGNFSMRRAVRETWAKEL---PSQTAVIFFIGRTENQTLVVSDQIKWYNRLEPPY 138 (325)
Q Consensus 62 ~~~li~p~~~C~~~~~~LlI~V~S~~~n~~rR~aIReTWg~~~---~~~v~~~FlvG~~~~~~~~~~~q~~~~~~~~~~~ 138 (325)
..++..|+..|....++|+|+|+|+++||+||++||+|||+.. +..++++|++|.+.+...
T Consensus 80 ~~~l~~p~~~~~~~~~~lLl~V~S~~~~farR~aiR~TW~~~~~v~~~~v~~~FLvG~~~~~~~---------------- 143 (349)
T KOG2287|consen 80 FYLLYLPEICDPDRPPELLLLVKSAPDNFARRNAIRKTWGNENNVRGGRVRVLFLVGLPSNEDK---------------- 143 (349)
T ss_pred hhhhcCChhhcCCCCceEEEEEecCCCCHHHHHHHHHHhcCccccCCCcEEEEEEecCCCcHHH----------------
Confidence 3456666654544447899999999999999999999999998 468999999999886431
Q ss_pred hhhhhhhhhcchhhhhhhhhhccCCCccccccCCCCcchhHHHHHHHHhhCCCEEEccccccCCchhHHHHHHHHHHHhh
Q psy12882 139 IAFVVILARVSTWFRIFLLTIQRGNCSSIMSTLPSGKILDEELVDEEQANYQDLVQEDFVDSYNNLTIASIMMLKFITHR 218 (325)
Q Consensus 139 ~~~~~~~~~~~~~~~~f~~g~~~~~~~~~~~~~p~~~~~~~~~l~~E~~~y~DIlq~df~DsY~NLTlKt~~~lkw~~~~ 218 (325)
+++.|.+|++.||||||.||.|+|.|||+|++++++|+..+
T Consensus 144 ---------------------------------------~~~~l~~Ea~~ygDIi~~df~Dty~nltlKtl~~l~w~~~~ 184 (349)
T KOG2287|consen 144 ---------------------------------------LNKLLADEARLYGDIIQVDFEDTYFNLTLKTLAILLWGVSK 184 (349)
T ss_pred ---------------------------------------HHHHHHHHHHHhCCEEEEecccchhchHHHHHHHHHHHHhc
Confidence 27899999999999999999999999999999999999999
Q ss_pred CCCcceEEEeCCceEecHHHHHHHhcCCCCCCcceeEEEEeeeCCeeeecCCCCCCCCccccCCCCCCCccccceeeecH
Q psy12882 219 CTHAQYIAKTDDDIYFNVHKLYSILTSPKFKREKVVLAGFLIRKGRVIRTPTEKWYTPEYMFSGDVYPDYLSGIAYIMSF 298 (325)
Q Consensus 219 c~~~~f~lK~DDD~fVnv~~L~~~L~~~~~~~~~~l~~G~~~~~~~piR~~~sKwyvp~~~y~~~~YP~Y~~G~gYvmS~ 298 (325)
||+++|++|+|||+|||+++|+++|.... ...+.+++|++..++.|+|++.+|||||+.+||+..|||||+|+|||+|+
T Consensus 185 cp~akfi~K~DDDvfv~~~~L~~~L~~~~-~~~~~~~~G~v~~~~~p~R~~~~KwyVp~~~y~~~~YP~Y~sG~gYvis~ 263 (349)
T KOG2287|consen 185 CPDAKFILKIDDDVFVNPDNLLEYLDKLN-DPSSDLYYGRVIQNAPPIRDKTSKWYVPESEYPCSVYPPYASGPGYVISG 263 (349)
T ss_pred CCcceEEEeccCceEEcHHHHHHHHhccC-CCCcceEEEeecccCCCCCCCCCCCccCHHHCCCCCCCCcCCCceeEecH
Confidence 99999999999999999999999999884 33456999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEeeeC
Q psy12882 299 KVARALYNVSLQLPLLHHEDVFITGNF 325 (325)
Q Consensus 299 d~v~~L~~~s~~~~~~~~EDVyiTGi~ 325 (325)
|+|++|++++.+.+.+++||||+||++
T Consensus 264 ~~a~~l~~~s~~~~~~~iEDV~~g~~l 290 (349)
T KOG2287|consen 264 DAARRLLKASKHLKFFPIEDVFVGGCL 290 (349)
T ss_pred HHHHHHHHHhcCCCccchHHHHHHHHH
Confidence 999999999999999999999999974
No 2
>PLN03133 beta-1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=7.1e-53 Score=431.37 Aligned_cols=200 Identities=31% Similarity=0.488 Sum_probs=178.1
Q ss_pred eeeeCCCCCCC-CCceEEEEEEcCCCCHHHHHHHHHHhhccC---CCceEEEEEeccCCCccchhhhhhhhhccCCCchh
Q psy12882 64 VLMCGALVCPP-TPLTLLIVVSSAVGNFSMRRAVRETWAKEL---PSQTAVIFFIGRTENQTLVVSDQIKWYNRLEPPYI 139 (325)
Q Consensus 64 ~li~p~~~C~~-~~~~LlI~V~S~~~n~~rR~aIReTWg~~~---~~~v~~~FlvG~~~~~~~~~~~q~~~~~~~~~~~~ 139 (325)
.+..|+ |+. ++++|+|+|+|+|+||+||+|||+|||+.. +..++++|++|.+.+...
T Consensus 373 ~lkApp--L~~~~~~~LlI~V~Sap~nf~rR~AIR~TWg~~~~~~~~~v~~rFvVG~s~n~~l----------------- 433 (636)
T PLN03133 373 ALKSPP--LSPKKPLDLFIGVFSTANNFKRRMAVRRTWMQYDAVRSGAVAVRFFVGLHKNQMV----------------- 433 (636)
T ss_pred HhcCCC--CCCCCceEEEEEEeCCcccHHHHHHHHHhhccccccCCCceEEEEEEecCCcHHH-----------------
Confidence 344444 663 567899999999999999999999999965 346899999999875432
Q ss_pred hhhhhhhhcchhhhhhhhhhccCCCccccccCCCCcchhHHHHHHHHhhCCCEEEccccccCCchhHHHHHHHHHHHhhC
Q psy12882 140 AFVVILARVSTWFRIFLLTIQRGNCSSIMSTLPSGKILDEELVDEEQANYQDLVQEDFVDSYNNLTIASIMMLKFITHRC 219 (325)
Q Consensus 140 ~~~~~~~~~~~~~~~f~~g~~~~~~~~~~~~~p~~~~~~~~~l~~E~~~y~DIlq~df~DsY~NLTlKt~~~lkw~~~~c 219 (325)
++.|.+|+++||||||+||+|+|+|||+|++++++|+. +|
T Consensus 434 ---------------------------------------~~~L~~Ea~~ygDIIq~dF~DsY~NLTlKtl~~~~wa~-~c 473 (636)
T PLN03133 434 ---------------------------------------NEELWNEARTYGDIQLMPFVDYYSLITWKTLAICIFGT-EV 473 (636)
T ss_pred ---------------------------------------HHHHHHHHHHcCCeEEEeeechhhhhHHHHHHHHHHHH-hC
Confidence 78899999999999999999999999999999999986 58
Q ss_pred CCcceEEEeCCceEecHHHHHHHhcCCCCCCcceeEEEEeeeCCeeeecCCCCCCCCccccCCCCCCCccccceeeecHH
Q psy12882 220 THAQYIAKTDDDIYFNVHKLYSILTSPKFKREKVVLAGFLIRKGRVIRTPTEKWYTPEYMFSGDVYPDYLSGIAYIMSFK 299 (325)
Q Consensus 220 ~~~~f~lK~DDD~fVnv~~L~~~L~~~~~~~~~~l~~G~~~~~~~piR~~~sKwyvp~~~y~~~~YP~Y~~G~gYvmS~d 299 (325)
++++|+||+|||+|||+++|+++|+..... +.+|+|++..+++|+|++.||||+|.++||++.|||||+|+|||||+|
T Consensus 474 ~~akFilK~DDDvFVnv~~Ll~~L~~~~~~--~~Ly~G~v~~~~~PiRd~~sKWYVs~~eyp~~~YPpYasG~gYVlS~D 551 (636)
T PLN03133 474 VSAKYVMKTDDDAFVRVDEVLASLKRTNVS--HGLLYGLINSDSQPHRNPDSKWYISPEEWPEETYPPWAHGPGYVVSRD 551 (636)
T ss_pred CCceEEEEcCCceEEcHHHHHHHHHhcCCC--CceEEEEeccCCCcccCCCCCCCCCHHHCCCCCCCCCCCcCEEEEcHH
Confidence 899999999999999999999999765432 359999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh--cCCCCCCCCcEEEeee
Q psy12882 300 VARALYNVS--LQLPLLHHEDVFITGN 324 (325)
Q Consensus 300 ~v~~L~~~s--~~~~~~~~EDVyiTGi 324 (325)
+|++|+.++ ..+++|++||||+|+.
T Consensus 552 la~~L~~~s~s~~l~~f~lEDVyvGi~ 578 (636)
T PLN03133 552 IAKEVYKRHKEGRLKMFKLEDVAMGIW 578 (636)
T ss_pred HHHHHHHhhhhcccCcCChhhHhHHHH
Confidence 999999986 4799999999999653
No 3
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=100.00 E-value=1.2e-51 Score=369.37 Aligned_cols=180 Identities=38% Similarity=0.680 Sum_probs=165.1
Q ss_pred HHHHHHHHHhhccC---CCceEEEEEeccCCCccchhhhhhhhhccCCCchhhhhhhhhhcchhhhhhhhhhccCCCccc
Q psy12882 91 SMRRAVRETWAKEL---PSQTAVIFFIGRTENQTLVVSDQIKWYNRLEPPYIAFVVILARVSTWFRIFLLTIQRGNCSSI 167 (325)
Q Consensus 91 ~rR~aIReTWg~~~---~~~v~~~FlvG~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~g~~~~~~~~~ 167 (325)
+||++||+|||+.. ..+++++|++|.+++....
T Consensus 1 ~rR~~IR~TW~~~~~~~~~~~~~~FvvG~~~~~~~~-------------------------------------------- 36 (195)
T PF01762_consen 1 ERRQAIRETWGNQRNFKGVRVKVVFVVGESPNSDSD-------------------------------------------- 36 (195)
T ss_pred ChHHHHHHHHhcccccCCCcEEEEEEEecCCCCcHH--------------------------------------------
Confidence 58999999999987 4689999999999843220
Q ss_pred cccCCCCcchhHHHHHHHHhhCCCEEEccccccCCchhHHHHHHHHHHHhhCCCcceEEEeCCceEecHHHHHHHhcCCC
Q psy12882 168 MSTLPSGKILDEELVDEEQANYQDLVQEDFVDSYNNLTIASIMMLKFITHRCTHAQYIAKTDDDIYFNVHKLYSILTSPK 247 (325)
Q Consensus 168 ~~~~p~~~~~~~~~l~~E~~~y~DIlq~df~DsY~NLTlKt~~~lkw~~~~c~~~~f~lK~DDD~fVnv~~L~~~L~~~~ 247 (325)
.++.|.+|+++||||||.||.|+|+|||+|++++|+|+.++|++++|++|+|||+|||+++|.++|....
T Consensus 37 ----------~~~~l~~E~~~y~Dil~~d~~D~y~nlt~K~~~~~~w~~~~c~~~~~v~k~DDD~~vn~~~l~~~L~~~~ 106 (195)
T PF01762_consen 37 ----------LQEALQEEAEKYGDILQGDFVDSYRNLTLKTLAGLKWASKHCPNAKYVLKVDDDVFVNPDRLVSFLKSLK 106 (195)
T ss_pred ----------HHHHhhhhhhhcCceEeeecccccchhhHHHHHHHHHHHhhCCchhheeecCcEEEEehHHhhhhhhhcc
Confidence 2778999999999999999999999999999999999999999999999999999999999999999884
Q ss_pred CCCcceeEEEEeeeCCeeeecCCCCCCCCccccCCCCCCCccccceeeecHHHHHHHHHHhcCCCCCCCCcEEEeeeC
Q psy12882 248 FKREKVVLAGFLIRKGRVIRTPTEKWYTPEYMFSGDVYPDYLSGIAYIMSFKVARALYNVSLQLPLLHHEDVFITGNF 325 (325)
Q Consensus 248 ~~~~~~l~~G~~~~~~~piR~~~sKwyvp~~~y~~~~YP~Y~~G~gYvmS~d~v~~L~~~s~~~~~~~~EDVyiTGi~ 325 (325)
....+..++|....+.+|+|++++|||+|+++||.+.|||||+|+||+||+++|+.|+.++.+++.+++||||+ ||+
T Consensus 107 ~~~~~~~~~g~~~~~~~~~r~~~~kw~v~~~~y~~~~yP~y~~G~~yvls~~~v~~i~~~~~~~~~~~~eDv~i-Gi~ 183 (195)
T PF01762_consen 107 QDPSKNSIYGGCIKNGPPIRDPSSKWYVSEEEYPDDYYPPYCSGGGYVLSSDVVKRIYKASSHTPFFPLEDVFI-GIL 183 (195)
T ss_pred cCccccccccccccCCccccccccCceeeeeecccccCCCcCCCCeEEecHHHHHHHHHHhhcCCCCCchHHHH-HHH
Confidence 33344678898888889999999999999999999999999999999999999999999999999999999999 974
No 4
>PLN03193 beta-1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=1.7e-48 Score=380.24 Aligned_cols=190 Identities=20% Similarity=0.280 Sum_probs=164.3
Q ss_pred CCceEEEEEEcCCCCHHHHHHHHHHhhccC--------CCceEEEEEeccCCCccchhhhhhhhhccCCCchhhhhhhhh
Q psy12882 75 TPLTLLIVVSSAVGNFSMRRAVRETWAKEL--------PSQTAVIFFIGRTENQTLVVSDQIKWYNRLEPPYIAFVVILA 146 (325)
Q Consensus 75 ~~~~LlI~V~S~~~n~~rR~aIReTWg~~~--------~~~v~~~FlvG~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~ 146 (325)
.+++|+|+|.|+++|++||++||+|||+.. ...++++|++|++.+...
T Consensus 137 ~~~~LvIgI~Sap~~~~RR~AIR~TWg~~~~~~~kle~~~gv~vrFVIG~s~~~~~------------------------ 192 (408)
T PLN03193 137 RRYLMVVGINTAFSSRKRRDSVRATWMPQGEKRKKLEEEKGIIIRFVIGHSATSGG------------------------ 192 (408)
T ss_pred ceEEEEEEEeCCCCCHHHHHHHHHHHcCCcccccccccCCcEEEEEEeecCCCcch------------------------
Confidence 457899999999999999999999999864 246999999999874321
Q ss_pred hcchhhhhhhhhhccCCCccccccCCCCcchhHHHHHHHHhhCCCEEEccccccCCchhHHHHHHHHHHHhhCCCcceEE
Q psy12882 147 RVSTWFRIFLLTIQRGNCSSIMSTLPSGKILDEELVDEEQANYQDLVQEDFVDSYNNLTIASIMMLKFITHRCTHAQYIA 226 (325)
Q Consensus 147 ~~~~~~~~f~~g~~~~~~~~~~~~~p~~~~~~~~~l~~E~~~y~DIlq~df~DsY~NLTlKt~~~lkw~~~~c~~~~f~l 226 (325)
.+++.|.+|+++||||||+||+|+|.|||+||+++++|+.++| +++|+|
T Consensus 193 ------------------------------~ldr~Le~Ea~~ygDIL~lDfvDsY~NLT~KTl~~f~wA~~~~-dAkF~m 241 (408)
T PLN03193 193 ------------------------------ILDRAIEAEDRKHGDFLRLDHVEGYLELSAKTKTYFATAVAMW-DADFYV 241 (408)
T ss_pred ------------------------------HHHHHHHHHHHHhCCEEEEecccccccchHHHHHHHHHHHHcC-CCeEEE
Confidence 0288899999999999999999999999999999999999988 799999
Q ss_pred EeCCceEecHHHHHHHhcCCCCCCcceeEEEEeeeCCeeeecCCCCCCCCcccc----CCCCCCCccccceeeecHHHHH
Q psy12882 227 KTDDDIYFNVHKLYSILTSPKFKREKVVLAGFLIRKGRVIRTPTEKWYTPEYMF----SGDVYPDYLSGIAYIMSFKVAR 302 (325)
Q Consensus 227 K~DDD~fVnv~~L~~~L~~~~~~~~~~l~~G~~~~~~~piR~~~sKwyvp~~~y----~~~~YP~Y~~G~gYvmS~d~v~ 302 (325)
|+|||+|||+++|+++|.....+. .+|+|++.. .|+|++.+|||.+++.| +++.|||||+|+|||||+|+|+
T Consensus 242 K~DDDvfVnv~~L~~~L~~~~~~~--rlYiG~m~~--gPvr~~~~~ky~epe~w~~~~~~~~YPpyAsG~gYVlS~DLa~ 317 (408)
T PLN03193 242 KVDDDVHVNIATLGETLVRHRKKP--RVYIGCMKS--GPVLSQKGVRYHEPEYWKFGENGNKYFRHATGQLYAISKDLAS 317 (408)
T ss_pred EcCCCceEcHHHHHHHHHhcCCCC--CEEEEeccc--CccccCCCCcCcCcccccccCccccCCCCCCcceEEehHHHHH
Confidence 999999999999999997654322 499999864 48888766555544445 7799999999999999999999
Q ss_pred HHHHHhcCCCCCCCCcEEEeee
Q psy12882 303 ALYNVSLQLPLLHHEDVFITGN 324 (325)
Q Consensus 303 ~L~~~s~~~~~~~~EDVyiTGi 324 (325)
.|+.++..++.|++||||+ |+
T Consensus 318 ~I~~n~~~L~~y~~EDV~v-G~ 338 (408)
T PLN03193 318 YISINQHVLHKYANEDVSL-GS 338 (408)
T ss_pred HHHhChhhhcccCcchhhh-hh
Confidence 9999988999999999998 43
No 5
>KOG2288|consensus
Probab=100.00 E-value=2.1e-32 Score=250.93 Aligned_cols=188 Identities=25% Similarity=0.412 Sum_probs=163.3
Q ss_pred CCceEEEEEEcCCCCHHHHHHHHHHhhccC--------CCceEEEEEeccCCCccchhhhhhhhhccCCCchhhhhhhhh
Q psy12882 75 TPLTLLIVVSSAVGNFSMRRAVRETWAKEL--------PSQTAVIFFIGRTENQTLVVSDQIKWYNRLEPPYIAFVVILA 146 (325)
Q Consensus 75 ~~~~LlI~V~S~~~n~~rR~aIReTWg~~~--------~~~v~~~FlvG~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~ 146 (325)
...+++|+|.|++++.+||+++|+||+... ...+.++|++|+......
T Consensus 9 ~k~l~vigI~T~f~s~~RR~~vR~TWmp~~~~l~rle~e~gv~~RFvIG~~~~g~~------------------------ 64 (274)
T KOG2288|consen 9 RKVLLVIGINTAFSSRKRRDSVRQTWMPSGEGLKRLEEEKGVIIRFVIGTATLGAS------------------------ 64 (274)
T ss_pred cceEEEEEeecccchhhhHHHHHHhhcCCccchhhhccccceEEEEEeccCCccHH------------------------
Confidence 356799999999999999999999999883 357999999999432221
Q ss_pred hcchhhhhhhhhhccCCCccccccCCCCcchhHHHHHHHHhhCCCEEEcc-ccccCCchhHHHHHHHHHHHhhCCCcceE
Q psy12882 147 RVSTWFRIFLLTIQRGNCSSIMSTLPSGKILDEELVDEEQANYQDLVQED-FVDSYNNLTIASIMMLKFITHRCTHAQYI 225 (325)
Q Consensus 147 ~~~~~~~~f~~g~~~~~~~~~~~~~p~~~~~~~~~l~~E~~~y~DIlq~d-f~DsY~NLTlKt~~~lkw~~~~c~~~~f~ 225 (325)
..++|++|.++|+|.+..| .+|.|.|||.||+.++.|+..+. +++|+
T Consensus 65 -------------------------------~~r~ie~E~~~~~DfllLd~h~E~Y~~Ls~Kt~~~f~~A~~~~-daeFy 112 (274)
T KOG2288|consen 65 -------------------------------LDRALEEENAQHGDFLLLDRHEEAYEELSAKTKAFFSAAVAHW-DAEFY 112 (274)
T ss_pred -------------------------------HHHHHHHHHHhcCCeEeechhHHHHHHHHHHHHHHHHHHHHhc-cceEE
Confidence 2889999999999999888 99999999999999999999998 79999
Q ss_pred EEeCCceEecHHHHHHHhcCCCCCCcceeEEEEeeeCCeeeecCCCCCCCCccccCCCC--CCCccccceeeecHHHHHH
Q psy12882 226 AKTDDDIYFNVHKLYSILTSPKFKREKVVLAGFLIRKGRVIRTPTEKWYTPEYMFSGDV--YPDYLSGIAYIMSFKVARA 303 (325)
Q Consensus 226 lK~DDD~fVnv~~L~~~L~~~~~~~~~~l~~G~~~~~~~piR~~~sKwyvp~~~y~~~~--YP~Y~~G~gYvmS~d~v~~ 303 (325)
+|+|||+|||+..|...|.....+ ..+|+|++.. ++++-++++|||.|++.+ ++. |-+|+.|++|+||.|+|..
T Consensus 113 vKvDDDv~v~l~~L~~~la~~r~~--pr~YiGcmks-g~v~~~~~~kw~EpeWkf-g~~g~YfrhA~G~~YvlS~dLa~y 188 (274)
T KOG2288|consen 113 VKVDDDVYVRLARLGTLLARERSH--PRLYIGCMKS-GPVLTQPGGKWYEPEWKF-GDNGNYFRHATGGGYVLSKDLATY 188 (274)
T ss_pred EEccccceecHHHHHHHHHhhccC--CceEEEEecC-CccccCCCCcccChhhhc-CcccccchhccCceEEeeHHHHHH
Confidence 999999999999999999876544 3599999754 455677899999999544 334 9999999999999999999
Q ss_pred HHHHhcCCCCCCCCcEEEe
Q psy12882 304 LYNVSLQLPLLHHEDVFIT 322 (325)
Q Consensus 304 L~~~s~~~~~~~~EDVyiT 322 (325)
|...+.....+..|||.++
T Consensus 189 i~in~~lL~~y~nEDVSlG 207 (274)
T KOG2288|consen 189 ISINRQLLHKYANEDVSLG 207 (274)
T ss_pred HHHhHHHHHhhccCCcccc
Confidence 9999888889999999874
No 6
>PTZ00210 UDP-GlcNAc-dependent glycosyltransferase; Provisional
Probab=99.98 E-value=8.6e-33 Score=266.90 Aligned_cols=166 Identities=19% Similarity=0.238 Sum_probs=142.8
Q ss_pred CCCCCCceEEEEEEcCCCC--HHHHHHHHHHhhccCC---------CceEEEEEeccCCCccchhhhhhhhhccCCCchh
Q psy12882 71 VCPPTPLTLLIVVSSAVGN--FSMRRAVRETWAKELP---------SQTAVIFFIGRTENQTLVVSDQIKWYNRLEPPYI 139 (325)
Q Consensus 71 ~C~~~~~~LlI~V~S~~~n--~~rR~aIReTWg~~~~---------~~v~~~FlvG~~~~~~~~~~~q~~~~~~~~~~~~ 139 (325)
.++.....++++|.|..++ |.||++.|+||.+..+ ..+-++|++|..+++.-+
T Consensus 74 ~w~~~~~lv~~Gi~S~d~~~r~~rR~lqr~t~w~y~~va~~~n~ftg~~lv~y~l~~H~~~~~~---------------- 137 (382)
T PTZ00210 74 VWKAQRFLAVLGIPSVDNSERSRRRDLQRQTCWKYSGVATRSNNFSGSLLPLYLLAPHQSNSYL---------------- 137 (382)
T ss_pred HhccCCceEEEeccCCCchHHHHHHHHHHhhhhcchhhhhhccCCchhhhhhhhhccCCccchh----------------
Confidence 4566777788899999998 9999999999998762 245568888887765210
Q ss_pred hhhhhhhhcchhhhhhhhhhccCCCccccccCCCCcchhHHHHHHHHhhCCCEEEccc------------------cccC
Q psy12882 140 AFVVILARVSTWFRIFLLTIQRGNCSSIMSTLPSGKILDEELVDEEQANYQDLVQEDF------------------VDSY 201 (325)
Q Consensus 140 ~~~~~~~~~~~~~~~f~~g~~~~~~~~~~~~~p~~~~~~~~~l~~E~~~y~DIlq~df------------------~DsY 201 (325)
.++.|.+|+++|||||+.+| .|+|
T Consensus 138 --------------------------------------~~~~L~eEA~~~~DIVilpf~d~~~tTnKkiG~~g~WG~e~e 179 (382)
T PTZ00210 138 --------------------------------------ISHSLKEEAARTHDIITLPTNDVSPSTRKKIGENGNWGIEAE 179 (382)
T ss_pred --------------------------------------hhHHHHHHHHHhCCEEEEecccCccccccccccCCcccchhh
Confidence 38899999999999999999 8888
Q ss_pred CchhHHHHHHHHHHHhhCCCcceEEEeCCceEecHHHHHHHhcCCCCCCcceeEEEEeeeCCeeeecCCCCCCCCccccC
Q psy12882 202 NNLTIASIMMLKFITHRCTHAQYIAKTDDDIYFNVHKLYSILTSPKFKREKVVLAGFLIRKGRVIRTPTEKWYTPEYMFS 281 (325)
Q Consensus 202 ~NLTlKt~~~lkw~~~~c~~~~f~lK~DDD~fVnv~~L~~~L~~~~~~~~~~l~~G~~~~~~~piR~~~sKwyvp~~~y~ 281 (325)
.|+|+||++.++|+.+.||+++|++|+|||+|||+|+++++|+..+. +.+|+|++.....|.|++
T Consensus 180 ~~mT~KT~l~~~wA~~~cP~a~YImKgDDDvFVrVp~lL~~Lr~~pr---r~LY~G~v~~~~~p~Rd~------------ 244 (382)
T PTZ00210 180 VAMSRKTYLWLRFALHMFPNVSYIVKGDDDIFIRVPKYLADLRVMPR---HGLYMGRYNYYNRIWRRN------------ 244 (382)
T ss_pred cchhHHHHHHHHHHHHhCCCCCeEEEcCCCeEeeHHHHHHHHhhCCC---CceEEEeeCCCCccccCC------------
Confidence 99999999999999999999999999999999999999999976643 349999988766777753
Q ss_pred CCCCCCccccceeeecHHHHHHHHHHh
Q psy12882 282 GDVYPDYLSGIAYIMSFKVARALYNVS 308 (325)
Q Consensus 282 ~~~YP~Y~~G~gYvmS~d~v~~L~~~s 308 (325)
+||||+|+||+||+|+|+.|+...
T Consensus 245 ---~PpY~~G~gYvLSrDVA~~Lvs~~ 268 (382)
T PTZ00210 245 ---QLTYVNGYCITLSRDTAQAIISYK 268 (382)
T ss_pred ---CCCccccceeeccHHHHHHHHhhC
Confidence 499999999999999999999984
No 7
>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []. It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.
Probab=99.43 E-value=3.1e-13 Score=126.49 Aligned_cols=159 Identities=19% Similarity=0.222 Sum_probs=80.0
Q ss_pred eEEEEEEcCCCCHHHH-HHHHHHhhccCCCceEEEEEeccCCCccchhhhhhhhhccCCCchhhhhhhhhhcchhhhhhh
Q psy12882 78 TLLIVVSSAVGNFSMR-RAVRETWAKELPSQTAVIFFIGRTENQTLVVSDQIKWYNRLEPPYIAFVVILARVSTWFRIFL 156 (325)
Q Consensus 78 ~LlI~V~S~~~n~~rR-~aIReTWg~~~~~~v~~~FlvG~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 156 (325)
.++|+|+|++++.+.| .+|++||++..+. ..|+....++.
T Consensus 7 dI~i~V~T~~k~h~tR~~~I~~TW~~~~~~---~~~ifsd~~d~------------------------------------ 47 (252)
T PF02434_consen 7 DIFIAVKTTKKFHKTRAPAIKQTWAKRCNK---QTFIFSDAEDP------------------------------------ 47 (252)
T ss_dssp GEEEEEE--GGGTTTTHHHHHHTGGGGSGG---GEEEEESS--H------------------------------------
T ss_pred cEEEEEEeCHHHHHHHHHHHHHHHHhhcCC---ceEEecCcccc------------------------------------
Confidence 4899999999887777 7999999998752 23321211111
Q ss_pred hhhccCCCccccccCCCCcchhHHHHHHHHhhCCCEEEccccccCCchhHHHHHHHHHHHhhCCCcceEEEeCCceEecH
Q psy12882 157 LTIQRGNCSSIMSTLPSGKILDEELVDEEQANYQDLVQEDFVDSYNNLTIASIMMLKFITHRCTHAQYIAKTDDDIYFNV 236 (325)
Q Consensus 157 ~g~~~~~~~~~~~~~p~~~~~~~~~l~~E~~~y~DIlq~df~DsY~NLTlKt~~~lkw~~~~c~~~~f~lK~DDD~fVnv 236 (325)
.+..+ .-.+++..+..+.+...+++..+++.+-...-++.+|++++|||+||++
T Consensus 48 ------------------------~l~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~Wf~~~DDDtyv~~ 101 (252)
T PF02434_consen 48 ------------------------SLPTV--TGVHLVNPNCDAGHCRKTLSCKMAYEYDHFLNSDKDWFCFADDDTYVNV 101 (252)
T ss_dssp ------------------------HHHHH--HGGGEEE-------------HHHHHHHHHHHHHT-SEEEEEETTEEE-H
T ss_pred ------------------------ccccc--cccccccCCCcchhhHHHHHHHHHHHHHhhhcCCceEEEEEeCCceecH
Confidence 11111 2234555555555555556666555553332367899999999999999
Q ss_pred HHHHHHhcCCCCCCcceeEEEEeeeCCeeeecCCCCCCCCccccCCCCCCCcc-ccceeeecHHHHHHHHHHh
Q psy12882 237 HKLYSILTSPKFKREKVVLAGFLIRKGRVIRTPTEKWYTPEYMFSGDVYPDYL-SGIAYIMSFKVARALYNVS 308 (325)
Q Consensus 237 ~~L~~~L~~~~~~~~~~l~~G~~~~~~~piR~~~sKwyvp~~~y~~~~YP~Y~-~G~gYvmS~d~v~~L~~~s 308 (325)
+||+++|...... +.+|+|..... .|..... + +........--.|+ +|+||+||+.+++++....
T Consensus 102 ~~L~~~L~~~~~~--~~~yiG~~~~~-~~~~~~~-~---~~~~~~~~~~~~f~~GGaG~vlSr~~~~k~~~~~ 167 (252)
T PF02434_consen 102 ENLRRLLSKYDPS--EPIYIGRPSGD-RPIEIIH-R---FNPNKSKDSGFWFATGGAGYVLSRALLKKMSPWA 167 (252)
T ss_dssp HHHHHHHTTS-TT--S--EEE-EE---------------------------EE-GGG-EEEEHHHHHHHHHHH
T ss_pred HHHHHHHhhCCCc--cCEEeeeeccC-ccceeec-c---ccccccCcCceEeeCCCeeHHHhHHHHHHHhhhc
Confidence 9999999987654 36999997643 2332100 0 00000111122466 4799999999999995443
No 8
>KOG2246|consensus
Probab=99.22 E-value=2.2e-10 Score=112.56 Aligned_cols=146 Identities=25% Similarity=0.360 Sum_probs=107.9
Q ss_pred CCceEEEEEEcCCCCHHHHH-HHHHHhhccCCCceEEEEEecc-CCCccchhhhhhhhhccCCCchhhhhhhhhhcchhh
Q psy12882 75 TPLTLLIVVSSAVGNFSMRR-AVRETWAKELPSQTAVIFFIGR-TENQTLVVSDQIKWYNRLEPPYIAFVVILARVSTWF 152 (325)
Q Consensus 75 ~~~~LlI~V~S~~~n~~rR~-aIReTWg~~~~~~v~~~FlvG~-~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (325)
.+..+++.|++++.+.+.|. ++=+||++..+ +..|+--. ++++..
T Consensus 89 r~~~v~cwv~t~~~~~~~~~~~v~~TW~~rc~---~~~f~s~~~s~~~~~------------------------------ 135 (364)
T KOG2246|consen 89 RSGRVLCWVLTSPMRHVTRADAVKETWLKRCD---KGIFFSPTLSKDDSR------------------------------ 135 (364)
T ss_pred CCceEEEEEEecCcCceeehhhhhcccccccC---cceecCccCCCCCCc------------------------------
Confidence 35568999999998888885 99999998864 33443211 111110
Q ss_pred hhhhhhhccCCCccccccCCCCcchhHHHHHHHHhhCCCEEEccccccCCchhHHHHHHHHHHHhhC-CCcceEEEeCCc
Q psy12882 153 RIFLLTIQRGNCSSIMSTLPSGKILDEELVDEEQANYQDLVQEDFVDSYNNLTIASIMMLKFITHRC-THAQYIAKTDDD 231 (325)
Q Consensus 153 ~~f~~g~~~~~~~~~~~~~p~~~~~~~~~l~~E~~~y~DIlq~df~DsY~NLTlKt~~~lkw~~~~c-~~~~f~lK~DDD 231 (325)
+ ..|..+..|+|+++-.|+..+++++.++- ++++|++|+|||
T Consensus 136 ------------------------------------f-~~v~~~~~~g~~~~~~ktr~~~~yv~~~~~~~~dWf~~aDDD 178 (364)
T KOG2246|consen 136 ------------------------------------F-PTVYYNLPDGYRSLWRKTRIAFKYVYDHILKDYDWFLKADDD 178 (364)
T ss_pred ------------------------------------C-ceeeccCCcchHHHHHHHHHHHHHHHHhccCCCCeEEeccCC
Confidence 1 12366778999999999999999998544 899999999999
Q ss_pred eEecHHHHHHHhcCCCCCCcceeEEEEeeeCCeeeecCCCCCCCCccccCCCCCCCccccceeeecHHHHHHHHHHhcCC
Q psy12882 232 IYFNVHKLYSILTSPKFKREKVVLAGFLIRKGRVIRTPTEKWYTPEYMFSGDVYPDYLSGIAYIMSFKVARALYNVSLQL 311 (325)
Q Consensus 232 ~fVnv~~L~~~L~~~~~~~~~~l~~G~~~~~~~piR~~~sKwyvp~~~y~~~~YP~Y~~G~gYvmS~d~v~~L~~~s~~~ 311 (325)
||+.++||..+|...+.. +.+|+|+... |.-+ .+ | + -+|+||++|+.+.+++++...+.
T Consensus 179 Ty~i~eNLr~~L~~yDp~--~p~YiG~~~~---~~~~-~~--y----~---------~g~ag~~ls~aa~~~la~~l~~~ 237 (364)
T KOG2246|consen 179 TYFIMENLRYVLSKYDPE--KPVYLGYRSK---SYFQ-NG--Y----S---------SGGAGYVLSFAALRRLAERLLNN 237 (364)
T ss_pred eEEeHHHHHHHHhhcCCC--CcEEeccccc---cccc-cc--c----c---------cCCCCcceeHHHHHHHHHHHhcc
Confidence 999999999999988754 4799998542 2111 01 1 1 25999999999999998886543
No 9
>PLN03153 hypothetical protein; Provisional
Probab=98.61 E-value=3e-06 Score=86.09 Aligned_cols=75 Identities=20% Similarity=0.252 Sum_probs=54.8
Q ss_pred HhhCCCcceEEEeCCceEecHHHHHHHhcCCCCCCcceeEEEEeeeCCeeeecCCCCCCCCccccCCCCCCCcc-cccee
Q psy12882 216 THRCTHAQYIAKTDDDIYFNVHKLYSILTSPKFKREKVVLAGFLIRKGRVIRTPTEKWYTPEYMFSGDVYPDYL-SGIAY 294 (325)
Q Consensus 216 ~~~c~~~~f~lK~DDD~fVnv~~L~~~L~~~~~~~~~~l~~G~~~~~~~piR~~~sKwyvp~~~y~~~~YP~Y~-~G~gY 294 (325)
..+-|+++|++++|||||+.++||++.|...+.+ +..|+|........+ ..+ . | .|+ +|+||
T Consensus 205 ~~~~pd~kWfVf~DDDTyf~~~NLv~~Ls~YDpt--kp~YIGs~Se~~~qn----~~f-------~---~-~fA~GGAG~ 267 (537)
T PLN03153 205 RLGLPDVRWFVLGDDDTIFNADNLVAVLSKYDPS--EMVYVGGPSESHSAN----SYF-------S---H-NMAFGGGGI 267 (537)
T ss_pred HhhCCCCCEEEEecCCccccHHHHHHHHhhcCCC--CCEEecccccccccc----ccc-------c---c-ccccCCceE
Confidence 3445899999999999999999999999987654 468999865432110 000 0 1 133 69999
Q ss_pred eecHHHHHHHHHH
Q psy12882 295 IMSFKVARALYNV 307 (325)
Q Consensus 295 vmS~d~v~~L~~~ 307 (325)
++|..+++.|.+.
T Consensus 268 ~LSrPLae~L~~~ 280 (537)
T PLN03153 268 AISYPLAEALSRI 280 (537)
T ss_pred EEcHHHHHHHHHH
Confidence 9999988888665
No 10
>PF01755 Glyco_transf_25: Glycosyltransferase family 25 (LPS biosynthesis protein); InterPro: IPR002654 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 25 GT25 from CAZY comprises enzymes with only one known activity; as a lipopolysaccharide biosynthesis protein. These enzymes catalyse the transfer of various sugars onto the growing lipopolysaccharide chain during its biosynthesis [].; GO: 0009103 lipopolysaccharide biosynthetic process
Probab=95.64 E-value=0.29 Score=43.37 Aligned_cols=29 Identities=31% Similarity=0.299 Sum_probs=22.9
Q ss_pred cccceeeecHHHHHHHHHHhcCCCCCCCCc
Q psy12882 289 LSGIAYIMSFKVARALYNVSLQLPLLHHED 318 (325)
Q Consensus 289 ~~G~gYvmS~d~v~~L~~~s~~~~~~~~ED 318 (325)
++.+||++|+..|++|++.+.... +|+|+
T Consensus 170 ~~t~aY~Is~~gA~kLL~~~~~~~-~pvD~ 198 (200)
T PF01755_consen 170 YGTCAYLISRKGARKLLEASKPIR-LPVDI 198 (200)
T ss_pred CcceeeeeCHHHHHHHHHhCcCCC-ccCcC
Confidence 456799999999999999985544 56554
No 11
>KOG3708|consensus
Probab=95.45 E-value=0.037 Score=56.57 Aligned_cols=76 Identities=14% Similarity=0.175 Sum_probs=58.7
Q ss_pred HHHHHHHHhhC-CCcceEEEeCCceEecHHHHHHHhcCCCCCCcceeEEEEeeeCCeeeecCCCCCCCCccccCCCCCCC
Q psy12882 209 IMMLKFITHRC-THAQYIAKTDDDIYFNVHKLYSILTSPKFKREKVVLAGFLIRKGRVIRTPTEKWYTPEYMFSGDVYPD 287 (325)
Q Consensus 209 ~~~lkw~~~~c-~~~~f~lK~DDD~fVnv~~L~~~L~~~~~~~~~~l~~G~~~~~~~piR~~~sKwyvp~~~y~~~~YP~ 287 (325)
.|.++++.++. .+++|++-+-||+|||.+.|+..+...+.+. .+|+|.-.. +- .+.
T Consensus 84 s~vl~~l~~~~~~~YDwFll~~D~tYv~a~~L~~l~~hmsin~--dlymGEe~~------~g------------s~r--- 140 (681)
T KOG3708|consen 84 SMVLGLLFNMVHNNYDWFLLAKDSTYVNAFVLLRLIDHMSINE--DLYMGEEAE------DG------------SGR--- 140 (681)
T ss_pred HHHHHHHHHhhccccceEEEecCcceecHHHHHHHHhhccccc--ccccchhhh------Cc------------cCc---
Confidence 45677777766 7899999999999999999999998877654 589993221 11 111
Q ss_pred ccc-cceeeecHHHHHHHHHHh
Q psy12882 288 YLS-GIAYIMSFKVARALYNVS 308 (325)
Q Consensus 288 Y~~-G~gYvmS~d~v~~L~~~s 308 (325)
|+ |.||++|..++.+|-..-
T Consensus 141 -C~l~~G~LLS~s~l~~lrnnl 161 (681)
T KOG3708|consen 141 -CRLDTGMLLSQSLLHALRNNL 161 (681)
T ss_pred -cccccceeecHHHHHHHHhhH
Confidence 64 899999999999997653
No 12
>cd06532 Glyco_transf_25 Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of Neisseria gonorrhoeae and Lic2A of Haemophilus influenzae. M. catarrhalis Lgt2 catalyzes the addition of galactose (Gal) to the growing chain of LOS on the cell surface. N. gonorrhoeae LgtB and LgtE link Gal-beta(1,4) to GlcNAc (N-acetylglucosamine) and Glc (glucose), respectively. The genes encoding LgtB and LgtE are two genes of a five gene locus involved in the synthesis of gonococcal LOS. LgtE is believed to perform the first step in LOS biosynthesis.
Probab=93.05 E-value=1.6 Score=36.30 Aligned_cols=52 Identities=17% Similarity=0.236 Sum_probs=41.8
Q ss_pred hHHHHHHHHHHHhhCCCcceEEEeCCceEecHHHHHHHhcCCCCCCcceeEEEEeeeCCeeeecCCCCCCCCccccCCCC
Q psy12882 205 TIASIMMLKFITHRCTHAQYIAKTDDDIYFNVHKLYSILTSPKFKREKVVLAGFLIRKGRVIRTPTEKWYTPEYMFSGDV 284 (325)
Q Consensus 205 TlKt~~~lkw~~~~c~~~~f~lK~DDD~fVnv~~L~~~L~~~~~~~~~~l~~G~~~~~~~piR~~~sKwyvp~~~y~~~~ 284 (325)
.+..+..++.+.+ .+.++.+-..||+.+..+
T Consensus 68 ~lSH~~~w~~~~~--~~~~~alIlEDDv~~~~~----------------------------------------------- 98 (128)
T cd06532 68 FLSHYKLWQKIVE--SNLEYALILEDDAILDPD----------------------------------------------- 98 (128)
T ss_pred HHHHHHHHHHHHH--cCCCeEEEEccCcEECCC-----------------------------------------------
Confidence 3555666666665 357899999999998876
Q ss_pred CCCccccceeeecHHHHHHHHHHhcC
Q psy12882 285 YPDYLSGIAYIMSFKVARALYNVSLQ 310 (325)
Q Consensus 285 YP~Y~~G~gYvmS~d~v~~L~~~s~~ 310 (325)
+..||++|++.|+++.+.+..
T Consensus 99 -----~~~~Y~vs~~~A~~ll~~~~~ 119 (128)
T cd06532 99 -----GTAGYLVSRKGAKKLLAALEP 119 (128)
T ss_pred -----CceEEEeCHHHHHHHHHhCCC
Confidence 678999999999999997665
No 13
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=88.93 E-value=1.2 Score=37.94 Aligned_cols=93 Identities=11% Similarity=-0.028 Sum_probs=52.9
Q ss_pred HHHHHHHhhCCCcceEEEeCCceEecHHHHHHHhcCCCCCCcceeEEEEeeeCCeeeecCCCCCCCCccccCCCCCCCcc
Q psy12882 210 MMLKFITHRCTHAQYIAKTDDDIYFNVHKLYSILTSPKFKREKVVLAGFLIRKGRVIRTPTEKWYTPEYMFSGDVYPDYL 289 (325)
Q Consensus 210 ~~lkw~~~~c~~~~f~lK~DDD~fVnv~~L~~~L~~~~~~~~~~l~~G~~~~~~~piR~~~sKwyvp~~~y~~~~YP~Y~ 289 (325)
.++..+.+.| +.+|++.+|+|..+..+.+.+.+..........+..|.......... ....+..............++
T Consensus 65 ~a~n~~~~~a-~~~~v~~ld~D~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 142 (202)
T cd06433 65 DAMNKGIALA-TGDIIGFLNSDDTLLPGALLAVVAAFAEHPEVDVVYGDVLLVDENGR-VIGRRRPPPFLDKFLLYGMPI 142 (202)
T ss_pred HHHHHHHHHc-CCCEEEEeCCCcccCchHHHHHHHHHHhCCCccEEEeeeEEEcCCCC-cccCCCCcchhhhHHhhcCcc
Confidence 4555666677 68999999999999988888876322111112356665432110000 011111111111222345667
Q ss_pred ccceeeecHHHHHHH
Q psy12882 290 SGIAYIMSFKVARAL 304 (325)
Q Consensus 290 ~G~gYvmS~d~v~~L 304 (325)
.|++.++++++.+.+
T Consensus 143 ~~~~~~~~~~~~~~~ 157 (202)
T cd06433 143 CHQATFFRRSLFEKY 157 (202)
T ss_pred cCcceEEEHHHHHHh
Confidence 888999999999887
No 14
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=86.34 E-value=16 Score=29.43 Aligned_cols=94 Identities=10% Similarity=-0.034 Sum_probs=50.3
Q ss_pred HHHHHHHhhCCCcceEEEeCCceEecHHHHHHHhcCCCCCCcceeEEEEeeeCCe---eeecCCC-CCCCCc-cccC---
Q psy12882 210 MMLKFITHRCTHAQYIAKTDDDIYFNVHKLYSILTSPKFKREKVVLAGFLIRKGR---VIRTPTE-KWYTPE-YMFS--- 281 (325)
Q Consensus 210 ~~lkw~~~~c~~~~f~lK~DDD~fVnv~~L~~~L~~~~~~~~~~l~~G~~~~~~~---piR~~~s-Kwyvp~-~~y~--- 281 (325)
.++.+..+.+ +.+|++.+|+|..+....|.+.+........-..+.|....... ....... ++.... ...+
T Consensus 68 ~~~n~~~~~~-~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (180)
T cd06423 68 GALNAGLRHA-KGDIVVVLDADTILEPDALKRLVVPFFADPKVGAVQGRVRVRNGSENLLTRLQAIEYLSIFRLGRRAQS 146 (180)
T ss_pred HHHHHHHHhc-CCCEEEEECCCCCcChHHHHHHHHHhccCCCeeeEeeeEEEecCcCcceeccchheecceeeeeeehhh
Confidence 4556666666 79999999999999876666553433222211234443322110 0100000 000000 0001
Q ss_pred CCCCCCccccceeeecHHHHHHH
Q psy12882 282 GDVYPDYLSGIAYIMSFKVARAL 304 (325)
Q Consensus 282 ~~~YP~Y~~G~gYvmS~d~v~~L 304 (325)
....+..+.|.++++++++..++
T Consensus 147 ~~~~~~~~~g~~~~~~~~~~~~~ 169 (180)
T cd06423 147 ALGGVLVLSGAFGAFRREALREV 169 (180)
T ss_pred eecceeecCchHHHHHHHHHHHh
Confidence 12345678899999999999886
No 15
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=83.62 E-value=13 Score=32.77 Aligned_cols=93 Identities=15% Similarity=0.085 Sum_probs=42.7
Q ss_pred HHHHHHHhhCCCcceEEEeCCceEecHHHHHHHhcCCCCCCcceeEEEEeeeCCee-eecCC-----CCCCCCccccCCC
Q psy12882 210 MMLKFITHRCTHAQYIAKTDDDIYFNVHKLYSILTSPKFKREKVVLAGFLIRKGRV-IRTPT-----EKWYTPEYMFSGD 283 (325)
Q Consensus 210 ~~lkw~~~~c~~~~f~lK~DDD~fVnv~~L~~~L~~~~~~~~~~l~~G~~~~~~~p-iR~~~-----sKwyvp~~~y~~~ 283 (325)
.++.+..+.+ +.++++.+|||+.+...-|.+.+.....+. -....|........ .-... ..|+...... ..
T Consensus 76 ~a~n~~~~~~-~~d~i~~lD~D~~~~p~~l~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 152 (228)
T PF13641_consen 76 RALNEALAAA-RGDYILFLDDDTVLDPDWLERLLAAFADPG-VGAVGGPVFPDNDRNWLTRLQDLFFARWHLRFRSG-RR 152 (228)
T ss_dssp HHHHHHHHH----SEEEEE-SSEEE-CHHHHHHHHHHHBSS---EEEEEEEETTCCCEEEE-TT--S-EETTTS-TT--B
T ss_pred HHHHHHHHhc-CCCEEEEECCCcEECHHHHHHHHHHHHhCC-CCeEeeeEeecCCCCHHHHHHHHHHhhhhhhhhhh-hc
Confidence 3556666667 599999999999998877666554331111 12444544332100 00000 1121111111 11
Q ss_pred CCC-CccccceeeecHHHHHHHH
Q psy12882 284 VYP-DYLSGIAYIMSFKVARALY 305 (325)
Q Consensus 284 ~YP-~Y~~G~gYvmS~d~v~~L~ 305 (325)
.+. .+++|++.++.+++++++-
T Consensus 153 ~~~~~~~~G~~~~~rr~~~~~~g 175 (228)
T PF13641_consen 153 ALGVAFLSGSGMLFRRSALEEVG 175 (228)
T ss_dssp ----S-B--TEEEEEHHHHHHH-
T ss_pred ccceeeccCcEEEEEHHHHHHhC
Confidence 111 4568999999999999883
No 16
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=83.62 E-value=13 Score=30.10 Aligned_cols=92 Identities=13% Similarity=0.043 Sum_probs=45.4
Q ss_pred HHHHHHhhCCCcceEEEeCCceEecHHHHHHHhcCCCCCCcceeEEEEeeeCCee---eecCCC--CC-CCC--ccccCC
Q psy12882 211 MLKFITHRCTHAQYIAKTDDDIYFNVHKLYSILTSPKFKREKVVLAGFLIRKGRV---IRTPTE--KW-YTP--EYMFSG 282 (325)
Q Consensus 211 ~lkw~~~~c~~~~f~lK~DDD~fVnv~~L~~~L~~~~~~~~~~l~~G~~~~~~~p---iR~~~s--Kw-yvp--~~~y~~ 282 (325)
++....+.+ +.+|++.+|||.++....|-..+....... ....+|........ ...... +| ... ......
T Consensus 69 ~~n~~~~~a-~~~~i~~ld~D~~~~~~~l~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (169)
T PF00535_consen 69 ARNRGIKHA-KGEYILFLDDDDIISPDWLEELVEALEKNP-PDVVIGSVIYIDDDNRYPDRRLRFSFWNRFERKIFNNIR 146 (169)
T ss_dssp HHHHHHHH---SSEEEEEETTEEE-TTHHHHHHHHHHHCT-TEEEEEEEEEEECTTETEECCCTSEEEECCHCHHHHTTH
T ss_pred ccccccccc-ceeEEEEeCCCceEcHHHHHHHHHHHHhCC-CcEEEEEEEEecCCccccccccchhhhhhhhhHHHHhhh
Confidence 334444455 456999999999999865544443222111 13455554321111 110000 01 111 111112
Q ss_pred CCCCCccccceeeecHHHHHHH
Q psy12882 283 DVYPDYLSGIAYIMSFKVARAL 304 (325)
Q Consensus 283 ~~YP~Y~~G~gYvmS~d~v~~L 304 (325)
..--.++.|++-++++++.+++
T Consensus 147 ~~~~~~~~~~~~~~rr~~~~~~ 168 (169)
T PF00535_consen 147 FWKISFFIGSCALFRRSVFEEI 168 (169)
T ss_dssp STTSSEESSSCEEEEEHHHHHC
T ss_pred cCCcccccccEEEEEHHHHHhh
Confidence 3334778899999999998875
No 17
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=81.20 E-value=36 Score=29.54 Aligned_cols=90 Identities=16% Similarity=0.094 Sum_probs=50.1
Q ss_pred HHHHHHhhCCCcceEEEeCCceEecHHHHHHHhcCCCCCCcceeEEEEeeeCCeeeecCCCC-----CCCCc---cccCC
Q psy12882 211 MLKFITHRCTHAQYIAKTDDDIYFNVHKLYSILTSPKFKREKVVLAGFLIRKGRVIRTPTEK-----WYTPE---YMFSG 282 (325)
Q Consensus 211 ~lkw~~~~c~~~~f~lK~DDD~fVnv~~L~~~L~~~~~~~~~~l~~G~~~~~~~piR~~~sK-----wyvp~---~~y~~ 282 (325)
++.+..+.| +.+|++.+|+|..+..+-|.+.+....... ...+.|..... .+ ...... +.... .....
T Consensus 73 a~n~g~~~~-~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~-~~~v~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~ 148 (229)
T cd04192 73 ALTTAIKAA-KGDWIVTTDADCVVPSNWLLTFVAFIQKEQ-IGLVAGPVIYF-KG-KSLLAKFQRLDWLSLLGLIAGSFG 148 (229)
T ss_pred HHHHHHHHh-cCCEEEEECCCcccCHHHHHHHHHHhhcCC-CcEEeeeeeec-CC-ccHHHHHHHHHHHHHHHHHhhHHH
Confidence 455666666 689999999999998766665554332221 23455554321 00 000000 00000 00112
Q ss_pred CCCCCccccceeeecHHHHHHH
Q psy12882 283 DVYPDYLSGIAYIMSFKVARAL 304 (325)
Q Consensus 283 ~~YP~Y~~G~gYvmS~d~v~~L 304 (325)
..+|..+.|++.++++++.+++
T Consensus 149 ~~~~~~~~g~~~~~rr~~~~~~ 170 (229)
T cd04192 149 LGKPFMCNGANMAYRKEAFFEV 170 (229)
T ss_pred hcCccccccceEEEEHHHHHHh
Confidence 3356667899999999999987
No 18
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=78.72 E-value=34 Score=27.79 Aligned_cols=24 Identities=17% Similarity=0.296 Sum_probs=20.7
Q ss_pred CcceEEEeCCceEecHHHHHHHhc
Q psy12882 221 HAQYIAKTDDDIYFNVHKLYSILT 244 (325)
Q Consensus 221 ~~~f~lK~DDD~fVnv~~L~~~L~ 244 (325)
+.+|++.+|||..+....+...+.
T Consensus 74 ~~~~i~~~D~D~~~~~~~l~~~~~ 97 (166)
T cd04186 74 KGDYVLLLNPDTVVEPGALLELLD 97 (166)
T ss_pred CCCEEEEECCCcEECccHHHHHHH
Confidence 689999999999999887777665
No 19
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=75.66 E-value=51 Score=28.22 Aligned_cols=88 Identities=10% Similarity=0.072 Sum_probs=46.3
Q ss_pred HhhCCCcceEEEeCCceEecHHHHHHHhcCCCCCCcceeEEEEeee--CCeeeecCCCCCCCCc----cccCCCCCCCcc
Q psy12882 216 THRCTHAQYIAKTDDDIYFNVHKLYSILTSPKFKREKVVLAGFLIR--KGRVIRTPTEKWYTPE----YMFSGDVYPDYL 289 (325)
Q Consensus 216 ~~~c~~~~f~lK~DDD~fVnv~~L~~~L~~~~~~~~~~l~~G~~~~--~~~piR~~~sKwyvp~----~~y~~~~YP~Y~ 289 (325)
...+ +.+|++..|+|..+....|.+.+..........++.|.... ...... ....+.... ..+.......++
T Consensus 75 ~~~~-~g~~v~~ld~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (214)
T cd04196 75 LQAA-DGDYVFFCDQDDIWLPDKLERLLKAFLKDDKPLLVYSDLELVDENGNPI-GESFFEYQKIKPGTSFNNLLFQNVV 152 (214)
T ss_pred HHhC-CCCEEEEECCCcccChhHHHHHHHHHhcCCCceEEecCcEEECCCCCCc-ccccccccccCCccCHHHHHHhCcc
Confidence 4445 68999999999988877666666541222212244443321 110100 001110000 011111223566
Q ss_pred ccceeeecHHHHHHHH
Q psy12882 290 SGIAYIMSFKVARALY 305 (325)
Q Consensus 290 ~G~gYvmS~d~v~~L~ 305 (325)
.|++.++.+++++++.
T Consensus 153 ~~~~~~~r~~~~~~~~ 168 (214)
T cd04196 153 TGCTMAFNRELLELAL 168 (214)
T ss_pred CCceeeEEHHHHHhhc
Confidence 7999999999999874
No 20
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=71.75 E-value=26 Score=30.85 Aligned_cols=27 Identities=15% Similarity=0.196 Sum_probs=22.9
Q ss_pred CcceEEEeCCceEecHHHHHHHhcCCC
Q psy12882 221 HAQYIAKTDDDIYFNVHKLYSILTSPK 247 (325)
Q Consensus 221 ~~~f~lK~DDD~fVnv~~L~~~L~~~~ 247 (325)
+.+|++.+|+|+.+..+.|.+.+....
T Consensus 77 ~~d~v~~lD~D~~~~~~~l~~l~~~~~ 103 (235)
T cd06434 77 TTDIVVLLDSDTVWPPNALPEMLKPFE 103 (235)
T ss_pred CCCEEEEECCCceeChhHHHHHHHhcc
Confidence 689999999999999988777766554
No 21
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=69.51 E-value=15 Score=31.85 Aligned_cols=62 Identities=13% Similarity=0.038 Sum_probs=40.9
Q ss_pred HHHHHhhCCCcceEEEeCCceEecHHHHHHHhcCCCCCCcceeEEEEeeeCCeeeecCCCCCCCCccccCCCCCCCcccc
Q psy12882 212 LKFITHRCTHAQYIAKTDDDIYFNVHKLYSILTSPKFKREKVVLAGFLIRKGRVIRTPTEKWYTPEYMFSGDVYPDYLSG 291 (325)
Q Consensus 212 lkw~~~~c~~~~f~lK~DDD~fVnv~~L~~~L~~~~~~~~~~l~~G~~~~~~~piR~~~sKwyvp~~~y~~~~YP~Y~~G 291 (325)
+....+.+ +.+|++.+|+|+.+...-|.+.+....... -.+..|. ++.|
T Consensus 78 ~n~g~~~a-~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~-~~~v~~~-----------------------------~~~g 126 (196)
T cd02520 78 LIKGYEEA-RYDILVISDSDISVPPDYLRRMVAPLMDPG-VGLVTCL-----------------------------CAFG 126 (196)
T ss_pred HHHHHHhC-CCCEEEEECCCceEChhHHHHHHHHhhCCC-CCeEEee-----------------------------cccC
Confidence 44444555 689999999999998766666554322111 1122222 5778
Q ss_pred ceeeecHHHHHHH
Q psy12882 292 IAYIMSFKVARAL 304 (325)
Q Consensus 292 ~gYvmS~d~v~~L 304 (325)
++.++.+++.+++
T Consensus 127 ~~~~~r~~~~~~~ 139 (196)
T cd02520 127 KSMALRREVLDAI 139 (196)
T ss_pred ceeeeEHHHHHhc
Confidence 9999999988876
No 22
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=67.30 E-value=26 Score=30.92 Aligned_cols=31 Identities=19% Similarity=0.133 Sum_probs=23.1
Q ss_pred HHHHHHhhCCCcceEEEeCCceEecHHHHHHHh
Q psy12882 211 MLKFITHRCTHAQYIAKTDDDIYFNVHKLYSIL 243 (325)
Q Consensus 211 ~lkw~~~~c~~~~f~lK~DDD~fVnv~~L~~~L 243 (325)
+++++.. .+++|++..|||+.+....|.+.+
T Consensus 67 g~~~a~~--~~~d~v~~lD~D~~~~~~~l~~l~ 97 (237)
T cd02526 67 GIKAALE--NGADYVLLFDQDSVPPPDMVEKLL 97 (237)
T ss_pred HHHHHHh--CCCCEEEEECCCCCcCHhHHHHHH
Confidence 4454443 268999999999999977777664
No 23
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=65.46 E-value=80 Score=30.88 Aligned_cols=94 Identities=11% Similarity=0.088 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHhhCCCcceEEEeCCceEecHHHHHHHhcCCCCCCcceeEEEEeeeCCeeeecCC--------CCCCCCc
Q psy12882 206 IASIMMLKFITHRCTHAQYIAKTDDDIYFNVHKLYSILTSPKFKREKVVLAGFLIRKGRVIRTPT--------EKWYTPE 277 (325)
Q Consensus 206 lKt~~~lkw~~~~c~~~~f~lK~DDD~fVnv~~L~~~L~~~~~~~~~~l~~G~~~~~~~piR~~~--------sKwyvp~ 277 (325)
.|.-.. ..+.+.+ +.++++.+|+|+.+..+-|.+.+.... +.+-.+..|... ..+..... .-++.|.
T Consensus 113 ~K~~~l-~~~~~~a-~ge~i~~~DaD~~~~p~~L~~lv~~~~-~~~v~~V~~~~~--~~~~~~~~~~l~~~~~~~~~~~~ 187 (373)
T TIGR03472 113 RKVSNL-INMLPHA-RHDILVIADSDISVGPDYLRQVVAPLA-DPDVGLVTCLYR--GRPVPGFWSRLGAMGINHNFLPS 187 (373)
T ss_pred hHHHHH-HHHHHhc-cCCEEEEECCCCCcChhHHHHHHHHhc-CCCcceEecccc--CCCCCCHHHHHHHHHhhhhhhHH
Confidence 354333 3344555 789999999999998877766654432 111123333211 11111000 0112221
Q ss_pred cccC-CCCCCCccccceeeecHHHHHHH
Q psy12882 278 YMFS-GDVYPDYLSGIAYIMSFKVARAL 304 (325)
Q Consensus 278 ~~y~-~~~YP~Y~~G~gYvmS~d~v~~L 304 (325)
.... ...-+.+|.|++.++.+++.+.+
T Consensus 188 ~~~~~~~~~~~~~~G~~~a~RR~~l~~i 215 (373)
T TIGR03472 188 VMVARALGRARFCFGATMALRRATLEAI 215 (373)
T ss_pred HHHHHhccCCccccChhhheeHHHHHHc
Confidence 1000 00113568899999999999887
No 24
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=62.84 E-value=4.3 Score=35.79 Aligned_cols=105 Identities=8% Similarity=-0.076 Sum_probs=52.3
Q ss_pred HHHHhhCCCcceEEEeCCceEecHHHHHHHhcCCCCCCcceeEEEEeee-CCeee----ecCC--CCCCCCccccC-CCC
Q psy12882 213 KFITHRCTHAQYIAKTDDDIYFNVHKLYSILTSPKFKREKVVLAGFLIR-KGRVI----RTPT--EKWYTPEYMFS-GDV 284 (325)
Q Consensus 213 kw~~~~c~~~~f~lK~DDD~fVnv~~L~~~L~~~~~~~~~~l~~G~~~~-~~~pi----R~~~--sKwyvp~~~y~-~~~ 284 (325)
....+.. +.+|++.+|+|+++..+.|.+.+........-....|.... +.... +... ...+....... ...
T Consensus 77 n~~~~~a-~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (234)
T cd06421 77 NNALAHT-TGDFVAILDADHVPTPDFLRRTLGYFLDDPKVALVQTPQFFYNPDPFDWLADGAPNEQELFYGVIQPGRDRW 155 (234)
T ss_pred HHHHHhC-CCCEEEEEccccCcCccHHHHHHHHHhcCCCeEEEecceEEecCCcchhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444444 68999999999999987776666543321111233332211 11000 0000 00000000000 012
Q ss_pred CCCccccceeeecHHHHHHHHHHhcCCCCCCCCcEEE
Q psy12882 285 YPDYLSGIAYIMSFKVARALYNVSLQLPLLHHEDVFI 321 (325)
Q Consensus 285 YP~Y~~G~gYvmS~d~v~~L~~~s~~~~~~~~EDVyi 321 (325)
...+++|++.++++++.+++-. .......||..+
T Consensus 156 ~~~~~~g~~~~~r~~~~~~ig~---~~~~~~~eD~~l 189 (234)
T cd06421 156 GAAFCCGSGAVVRREALDEIGG---FPTDSVTEDLAT 189 (234)
T ss_pred CCceecCceeeEeHHHHHHhCC---CCccceeccHHH
Confidence 2467789999999999988731 112234577544
No 25
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=62.65 E-value=22 Score=32.86 Aligned_cols=32 Identities=16% Similarity=-0.118 Sum_probs=23.9
Q ss_pred HHHHHHhhCCCcceEEEeCCceEecHHHHHHHhc
Q psy12882 211 MLKFITHRCTHAQYIAKTDDDIYFNVHKLYSILT 244 (325)
Q Consensus 211 ~lkw~~~~c~~~~f~lK~DDD~fVnv~~L~~~L~ 244 (325)
+++++.+ .+++|++..|||+.+..+.|.+.+.
T Consensus 65 Gi~~a~~--~~~d~i~~lD~D~~~~~~~l~~l~~ 96 (281)
T TIGR01556 65 GLDASFR--RGVQGVLLLDQDSRPGNAFLAAQWK 96 (281)
T ss_pred HHHHHHH--CCCCEEEEECCCCCCCHHHHHHHHH
Confidence 5666654 3689999999999998766555443
No 26
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=61.11 E-value=1.7e+02 Score=28.70 Aligned_cols=35 Identities=20% Similarity=0.212 Sum_probs=27.5
Q ss_pred HHHHHHHhhCCCcceEEEeCCceEecHHHHHHHhc
Q psy12882 210 MMLKFITHRCTHAQYIAKTDDDIYFNVHKLYSILT 244 (325)
Q Consensus 210 ~~lkw~~~~c~~~~f~lK~DDD~fVnv~~L~~~L~ 244 (325)
.+++.+.+.+++.+|++.+|+|+.+..+.|.+.+.
T Consensus 122 ~g~~~A~~~~~~gd~llflDaD~~~~p~~l~~lv~ 156 (384)
T TIGR03469 122 QGIAAARTLAPPADYLLLTDADIAHGPDNLARLVA 156 (384)
T ss_pred HHHHHHhccCCCCCEEEEECCCCCCChhHHHHHHH
Confidence 46666666666689999999999999877666654
No 27
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=55.93 E-value=34 Score=28.71 Aligned_cols=35 Identities=9% Similarity=0.037 Sum_probs=24.9
Q ss_pred HHHHHHhhCCCcceEEEeCCceEecHHHHHHHhcCC
Q psy12882 211 MLKFITHRCTHAQYIAKTDDDIYFNVHKLYSILTSP 246 (325)
Q Consensus 211 ~lkw~~~~c~~~~f~lK~DDD~fVnv~~L~~~L~~~ 246 (325)
++....+.+ +.+|++..|+|..+...-|.+.+...
T Consensus 70 ~~n~g~~~a-~g~~i~~lD~D~~~~~~~l~~~~~~~ 104 (182)
T cd06420 70 IRNKAIAAA-KGDYLIFIDGDCIPHPDFIADHIELA 104 (182)
T ss_pred HHHHHHHHh-cCCEEEEEcCCcccCHHHHHHHHHHh
Confidence 334444555 68999999999999877666665544
No 28
>KOG2336|consensus
Probab=55.06 E-value=11 Score=36.47 Aligned_cols=37 Identities=35% Similarity=0.609 Sum_probs=30.1
Q ss_pred eeeCCCCCCCCCceEEEEEEcCCCCHHHHHHH-------HHHhhccC
Q psy12882 65 LMCGALVCPPTPLTLLIVVSSAVGNFSMRRAV-------RETWAKEL 104 (325)
Q Consensus 65 li~p~~~C~~~~~~LlI~V~S~~~n~~rR~aI-------ReTWg~~~ 104 (325)
.|...+.|+++++ =+|.|..+||+.|.+| ++||+...
T Consensus 172 ~is~g~~~~gkpv---DLVLSCVDNfEARMavN~ACNE~~q~WmESG 215 (422)
T KOG2336|consen 172 RISNGSLCPGKPV---DLVLSCVDNFEARMAVNQACNELNQTWMESG 215 (422)
T ss_pred HhhcCCCCCCCcc---eEEeeehhhHHHHHHHHHHHHHhhhHHHHcc
Confidence 4667789999886 4578999999999886 78999764
No 29
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=54.20 E-value=18 Score=31.08 Aligned_cols=93 Identities=18% Similarity=0.159 Sum_probs=49.6
Q ss_pred eEEEeCCceEecHHHHHHHhcCCCCCCcceeEEEEeeeCCeeeecCCCCCCCCccc------c---CCCCCCCcccccee
Q psy12882 224 YIAKTDDDIYFNVHKLYSILTSPKFKREKVVLAGFLIRKGRVIRTPTEKWYTPEYM------F---SGDVYPDYLSGIAY 294 (325)
Q Consensus 224 f~lK~DDD~fVnv~~L~~~L~~~~~~~~~~l~~G~~~~~~~piR~~~sKwyvp~~~------y---~~~~YP~Y~~G~gY 294 (325)
|++-+|+|+-+..+-|.+.+.... +++-....|..... +..+.-.++..-++. . ..-..|.+++|++.
T Consensus 1 ~v~~~DaDt~~~~d~l~~~~~~~~-~~~~~~vq~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~ 77 (193)
T PF13632_consen 1 YVLFLDADTRLPPDFLERLVAALE-DPKVDAVQGPIIFR--NRGSLLTRLQDFEYAISHGLSRLSQSSLGRPLFLSGSGM 77 (193)
T ss_pred CEEEEcCCCCCChHHHHHHHHHHh-CCCceEEEccEEec--CCCChhheeehhhhhhhhhhhHHHHHhcCCCccccCcce
Confidence 688999999999887776654433 11112333443321 111111122222110 0 12234778899999
Q ss_pred eecHHHHHHHHHHhcCCCCCCCCcEEE
Q psy12882 295 IMSFKVARALYNVSLQLPLLHHEDVFI 321 (325)
Q Consensus 295 vmS~d~v~~L~~~s~~~~~~~~EDVyi 321 (325)
++++++.+++.--. -+....||..+
T Consensus 78 ~~r~~~l~~vg~~~--~~~~~~ED~~l 102 (193)
T PF13632_consen 78 LFRREALREVGGFD--DPFSIGEDMDL 102 (193)
T ss_pred eeeHHHHHHhCccc--ccccccchHHH
Confidence 99999999873111 13344566543
No 30
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=53.40 E-value=1.5e+02 Score=25.81 Aligned_cols=33 Identities=9% Similarity=0.170 Sum_probs=24.0
Q ss_pred HHHHHHhhCCCcceEEEeCCceEecHHHHHHHhc
Q psy12882 211 MLKFITHRCTHAQYIAKTDDDIYFNVHKLYSILT 244 (325)
Q Consensus 211 ~lkw~~~~c~~~~f~lK~DDD~fVnv~~L~~~L~ 244 (325)
++....+.. +.+|++.+|||..+...-|.+.+.
T Consensus 72 a~N~g~~~a-~~d~v~~lD~D~~~~~~~l~~~~~ 104 (249)
T cd02525 72 GLNIGIRNS-RGDIIIRVDAHAVYPKDYILELVE 104 (249)
T ss_pred HHHHHHHHh-CCCEEEEECCCccCCHHHHHHHHH
Confidence 455555544 689999999999998766666554
No 31
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=53.05 E-value=1.5e+02 Score=25.40 Aligned_cols=34 Identities=18% Similarity=0.042 Sum_probs=24.4
Q ss_pred HHHHHHHhhCCCcceEEEeCCceEecHHHHHHHhcC
Q psy12882 210 MMLKFITHRCTHAQYIAKTDDDIYFNVHKLYSILTS 245 (325)
Q Consensus 210 ~~lkw~~~~c~~~~f~lK~DDD~fVnv~~L~~~L~~ 245 (325)
.+++++. ..+.+|++..|||+.+....|.+.+..
T Consensus 70 ~~~~~a~--~~~~d~v~~ld~D~~~~~~~l~~l~~~ 103 (202)
T cd04185 70 EGVRRAY--ELGYDWIWLMDDDAIPDPDALEKLLAY 103 (202)
T ss_pred HHHHHHh--ccCCCEEEEeCCCCCcChHHHHHHHHH
Confidence 3556655 347899999999999997666555443
No 32
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=51.84 E-value=56 Score=30.89 Aligned_cols=106 Identities=18% Similarity=0.175 Sum_probs=57.4
Q ss_pred HHHHHHHhhCCCcceEEEeCCceEecHHHHHHHhcCCCCCCcceeEEEEeeeCC----ee-eec-----CCCCC-CCCcc
Q psy12882 210 MMLKFITHRCTHAQYIAKTDDDIYFNVHKLYSILTSPKFKREKVVLAGFLIRKG----RV-IRT-----PTEKW-YTPEY 278 (325)
Q Consensus 210 ~~lkw~~~~c~~~~f~lK~DDD~fVnv~~L~~~L~~~~~~~~~~l~~G~~~~~~----~p-iR~-----~~sKw-yvp~~ 278 (325)
.+++.+...- .+|++-.++|+.+..+.|.+.++-..... ...+.|....+. .+ .+. ....| ..+..
T Consensus 75 ~g~~~a~~~~--~~~~l~LN~D~~~~~~~l~~ll~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (305)
T COG1216 75 RGIKYALAKG--DDYVLLLNPDTVVEPDLLEELLKAAEEDP-AAGVVGPLIRNYDESLYIDRRGGESDGLTGGWRASPLL 151 (305)
T ss_pred HHHHHHhcCC--CcEEEEEcCCeeeChhHHHHHHHHHHhCC-CCeEeeeeEecCCCCcchheeccccccccccceecccc
Confidence 4666665531 22999999999999888887776543222 123444433221 01 010 01122 22222
Q ss_pred ccCC-----CCCCCccccceeeecHHHHHHHHHHhcCCC-CCCCCcEE
Q psy12882 279 MFSG-----DVYPDYLSGIAYIMSFKVARALYNVSLQLP-LLHHEDVF 320 (325)
Q Consensus 279 ~y~~-----~~YP~Y~~G~gYvmS~d~v~~L~~~s~~~~-~~~~EDVy 320 (325)
..+. ...-.+++|++-++++++.+++-- ..-. ..+.||+-
T Consensus 152 ~~~~~~~~~~~~~~~~~G~~~li~~~~~~~vG~--~de~~F~y~eD~D 197 (305)
T COG1216 152 EIAPDLSSYLEVVASLSGACLLIRREAFEKVGG--FDERFFIYYEDVD 197 (305)
T ss_pred cccccccchhhhhhhcceeeeEEcHHHHHHhCC--CCcccceeehHHH
Confidence 2221 112226899999999999999843 1122 35677763
No 33
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=51.77 E-value=75 Score=26.77 Aligned_cols=94 Identities=16% Similarity=0.008 Sum_probs=48.7
Q ss_pred HHHHHHHhhCCCcceEEEeCCceEecHHHHHHHhcCCCCCCcceeEEEEeeeCCee-eecCCCCCCCCccccCCCCCCCc
Q psy12882 210 MMLKFITHRCTHAQYIAKTDDDIYFNVHKLYSILTSPKFKREKVVLAGFLIRKGRV-IRTPTEKWYTPEYMFSGDVYPDY 288 (325)
Q Consensus 210 ~~lkw~~~~c~~~~f~lK~DDD~fVnv~~L~~~L~~~~~~~~~~l~~G~~~~~~~p-iR~~~sKwyvp~~~y~~~~YP~Y 288 (325)
.+++...+.+ ..+|++.+|+|.......|-+.+...... ..+..|.......+ .+.-.++.+...........-+.
T Consensus 70 ~a~n~g~~~a-~~d~i~~~D~D~~~~~~~l~~l~~~~~~~--~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (181)
T cd04187 70 AALLAGLDHA-RGDAVITMDADLQDPPELIPEMLAKWEEG--YDVVYGVRKNRKESWLKRLTSKLFYRLINKLSGVDIPD 146 (181)
T ss_pred HHHHHHHHhc-CCCEEEEEeCCCCCCHHHHHHHHHHHhCC--CcEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 3445555555 46999999999998865555544432111 23556653321110 00000011100000111222355
Q ss_pred cccceeeecHHHHHHHHH
Q psy12882 289 LSGIAYIMSFKVARALYN 306 (325)
Q Consensus 289 ~~G~gYvmS~d~v~~L~~ 306 (325)
..|++.++++++++.+-.
T Consensus 147 ~~~~~~~~~r~~~~~i~~ 164 (181)
T cd04187 147 NGGDFRLMDRKVVDALLL 164 (181)
T ss_pred CCCCEEEEcHHHHHHHHh
Confidence 678889999999999854
No 34
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=47.35 E-value=2.4e+02 Score=26.22 Aligned_cols=32 Identities=16% Similarity=0.019 Sum_probs=22.0
Q ss_pred HHHHHhhCCCcceEEEeCCceEecHHHHHHHhc
Q psy12882 212 LKFITHRCTHAQYIAKTDDDIYFNVHKLYSILT 244 (325)
Q Consensus 212 lkw~~~~c~~~~f~lK~DDD~fVnv~~L~~~L~ 244 (325)
.....+.+ +.+|++.+|+|+.+...-|...+.
T Consensus 75 ~N~g~~~A-~gd~i~fLD~D~~~~~~wL~~ll~ 106 (299)
T cd02510 75 RIAGARAA-TGDVLVFLDSHCEVNVGWLEPLLA 106 (299)
T ss_pred HHHHHHHc-cCCEEEEEeCCcccCccHHHHHHH
Confidence 34444445 579999999999998655544443
No 35
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=45.82 E-value=1.3e+02 Score=30.19 Aligned_cols=35 Identities=17% Similarity=0.202 Sum_probs=27.2
Q ss_pred HHHHHHHhhCCCcceEEEeCCceEecHHHHHHHhcC
Q psy12882 210 MMLKFITHRCTHAQYIAKTDDDIYFNVHKLYSILTS 245 (325)
Q Consensus 210 ~~lkw~~~~c~~~~f~lK~DDD~fVnv~~L~~~L~~ 245 (325)
.++.+..+.+ +.+|++.+|+|..+..+.|.+.+..
T Consensus 121 ~AlN~gl~~s-~g~~v~~~DaD~~~~~d~L~~l~~~ 155 (439)
T TIGR03111 121 KALNAAIYNS-IGKYIIHIDSDGKLHKDAIKNMVTR 155 (439)
T ss_pred HHHHHHHHHc-cCCEEEEECCCCCcChHHHHHHHHH
Confidence 4566766776 5899999999999998877766543
No 36
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=42.74 E-value=35 Score=29.17 Aligned_cols=35 Identities=17% Similarity=0.252 Sum_probs=25.1
Q ss_pred HHHHHHhhCCCcceEEEeCCceEecHHHHHHHhcCC
Q psy12882 211 MLKFITHRCTHAQYIAKTDDDIYFNVHKLYSILTSP 246 (325)
Q Consensus 211 ~lkw~~~~c~~~~f~lK~DDD~fVnv~~L~~~L~~~ 246 (325)
++.+..+.+ +.+|++..|+|..+..+.|.+.+...
T Consensus 74 a~n~g~~~a-~~d~i~~ld~D~~~~~~~l~~~~~~~ 108 (202)
T cd04184 74 ATNSALELA-TGEFVALLDHDDELAPHALYEVVKAL 108 (202)
T ss_pred HHHHHHHhh-cCCEEEEECCCCcCChHHHHHHHHHH
Confidence 344444555 57999999999999887666666543
No 37
>PF03452 Anp1: Anp1; InterPro: IPR005109 The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function. These proteins colocalize within the cis Golgi, where they are physically associated in two distinct complexes [].
Probab=41.43 E-value=1.5e+02 Score=28.39 Aligned_cols=28 Identities=18% Similarity=0.113 Sum_probs=25.8
Q ss_pred CCcceEEEeCCceEecHHHHHHHhcCCC
Q psy12882 220 THAQYIAKTDDDIYFNVHKLYSILTSPK 247 (325)
Q Consensus 220 ~~~~f~lK~DDD~fVnv~~L~~~L~~~~ 247 (325)
|..+|++-.|-|+.-.++.|++.|.+..
T Consensus 141 p~~swVlWlDaDIv~~P~~lI~dli~~~ 168 (269)
T PF03452_consen 141 PWHSWVLWLDADIVETPPTLIQDLIAHD 168 (269)
T ss_pred CcccEEEEEecCcccCChHHHHHHHhCC
Confidence 7899999999999999999999997764
No 38
>PF05412 Peptidase_C33: Equine arterivirus Nsp2-type cysteine proteinase; InterPro: IPR008743 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases corresponds to MEROPS peptidase family C33 (clan CA). The type example is equine arteritis virus Nsp2-type cysteine proteinase, which is involved in viral polyprotein processing [].; GO: 0016032 viral reproduction, 0019082 viral protein processing
Probab=40.13 E-value=18 Score=29.84 Aligned_cols=29 Identities=28% Similarity=0.453 Sum_probs=21.5
Q ss_pred HHHHHHHHHH--H---hhCCCcceEEEeCCceEe
Q psy12882 206 IASIMMLKFI--T---HRCTHAQYIAKTDDDIYF 234 (325)
Q Consensus 206 lKt~~~lkw~--~---~~c~~~~f~lK~DDD~fV 234 (325)
.++++.++.- . ..||+++|++|+|++=+.
T Consensus 48 ~~~iq~l~lPat~~~~~~Cp~ArYv~~l~~qHW~ 81 (108)
T PF05412_consen 48 YQVIQSLRLPATLDRNGACPHARYVLKLDGQHWE 81 (108)
T ss_pred HHHHHHccCceeccCCCCCCCCEEEEEecCceEE
Confidence 4566666652 2 579999999999998654
No 39
>PF14851 FAM176: FAM176 family
Probab=38.97 E-value=1e+02 Score=27.07 Aligned_cols=24 Identities=25% Similarity=0.487 Sum_probs=17.0
Q ss_pred EEEEcCC------CCHHHH-HHHHHHhhccC
Q psy12882 81 IVVSSAV------GNFSMR-RAVRETWAKEL 104 (325)
Q Consensus 81 I~V~S~~------~n~~rR-~aIReTWg~~~ 104 (325)
+=|.+++ .-.|+| +.|||-|+|..
T Consensus 110 ~nvf~sae~~e~A~rlEeRe~iirEIW~n~~ 140 (153)
T PF14851_consen 110 VNVFTSAEELERAQRLEERERIIREIWMNGQ 140 (153)
T ss_pred cCCcccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4466664 356667 68999999975
No 40
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=38.49 E-value=17 Score=31.22 Aligned_cols=76 Identities=18% Similarity=0.256 Sum_probs=43.7
Q ss_pred CcceEEEeCCceEecHHHHHHHhcCCCCCCcceeEEEEeeeCCeeeecCCCCCCCCcc--cc-----------CCCCCCC
Q psy12882 221 HAQYIAKTDDDIYFNVHKLYSILTSPKFKREKVVLAGFLIRKGRVIRTPTEKWYTPEY--MF-----------SGDVYPD 287 (325)
Q Consensus 221 ~~~f~lK~DDD~fVnv~~L~~~L~~~~~~~~~~l~~G~~~~~~~piR~~~sKwyvp~~--~y-----------~~~~YP~ 287 (325)
+.++++.+|.|+.+.+..|.+.+...... ..+..|.... +++...|.-... .| ..-.-+.
T Consensus 81 ~~d~v~~~DaD~~~~p~~l~~l~~~~~~~--~~~v~g~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (183)
T cd06438 81 DPDAVVVFDADNLVDPNALEELNARFAAG--ARVVQAYYNS-----KNPDDSWITRLYAFAFLVFNRLRPLGRSNLGLSC 153 (183)
T ss_pred CCCEEEEEcCCCCCChhHHHHHHHHHhhC--CCeeEEEEee-----eCCccCHHHHHHHHHHHHHHHHHHHHHHHcCCCe
Confidence 68999999999999976666555433211 1255565321 112222311000 00 0012244
Q ss_pred ccccceeeecHHHHHH
Q psy12882 288 YLSGIAYIMSFKVARA 303 (325)
Q Consensus 288 Y~~G~gYvmS~d~v~~ 303 (325)
++.|+++++++++.++
T Consensus 154 ~~~G~~~~~rr~~l~~ 169 (183)
T cd06438 154 QLGGTGMCFPWAVLRQ 169 (183)
T ss_pred eecCchhhhHHHHHHh
Confidence 6789999999999988
No 41
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=37.82 E-value=18 Score=32.62 Aligned_cols=36 Identities=8% Similarity=0.067 Sum_probs=27.7
Q ss_pred HHHHHHHhhCCCcceEEEeCCceEecHHHHHHHhcCC
Q psy12882 210 MMLKFITHRCTHAQYIAKTDDDIYFNVHKLYSILTSP 246 (325)
Q Consensus 210 ~~lkw~~~~c~~~~f~lK~DDD~fVnv~~L~~~L~~~ 246 (325)
.++....+.. +.+|++.+|+|+.+..+.|.+.+...
T Consensus 74 ~a~n~g~~~a-~gd~i~~~DaD~~~~~~~l~~~~~~~ 109 (241)
T cd06427 74 KACNYALAFA-RGEYVVIYDAEDAPDPDQLKKAVAAF 109 (241)
T ss_pred HHHHHHHHhc-CCCEEEEEcCCCCCChHHHHHHHHHH
Confidence 3555666665 57999999999999998887776544
No 42
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=35.22 E-value=2.1e+02 Score=21.99 Aligned_cols=32 Identities=16% Similarity=0.046 Sum_probs=23.9
Q ss_pred HHHHHHhhCCCcceEEEeCCceEecHHHHHHHh
Q psy12882 211 MLKFITHRCTHAQYIAKTDDDIYFNVHKLYSIL 243 (325)
Q Consensus 211 ~lkw~~~~c~~~~f~lK~DDD~fVnv~~L~~~L 243 (325)
++..+.+.+ +.++++-+|+|..+..+.+...+
T Consensus 68 ~~~~~~~~~-~~d~v~~~d~D~~~~~~~~~~~~ 99 (156)
T cd00761 68 ARNAGLKAA-RGEYILFLDADDLLLPDWLERLV 99 (156)
T ss_pred HHHHHHHHh-cCCEEEEECCCCccCccHHHHHH
Confidence 444444555 68999999999999888777653
No 43
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=32.02 E-value=54 Score=27.44 Aligned_cols=93 Identities=11% Similarity=-0.021 Sum_probs=48.0
Q ss_pred HHHHHHhhCCCcceEEEeCCceEecHHHHHHHhcCCCCCCcceeEEEEeeeCCe----eeecCCCCCCCCcc-ccCCCCC
Q psy12882 211 MLKFITHRCTHAQYIAKTDDDIYFNVHKLYSILTSPKFKREKVVLAGFLIRKGR----VIRTPTEKWYTPEY-MFSGDVY 285 (325)
Q Consensus 211 ~lkw~~~~c~~~~f~lK~DDD~fVnv~~L~~~L~~~~~~~~~~l~~G~~~~~~~----piR~~~sKwyvp~~-~y~~~~Y 285 (325)
++....+.+ ..+|++.+|+|..+....|.+.+.....+. ..+..|....... +.-.....+..... ..-...-
T Consensus 70 a~n~g~~~a-~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~-~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (185)
T cd04179 70 AVRAGFKAA-RGDIVVTMDADLQHPPEDIPKLLEKLLEGG-ADVVIGSRFVRGGGAGMPLLRRLGSRLFNFLIRLLLGVR 147 (185)
T ss_pred HHHHHHHHh-cCCEEEEEeCCCCCCHHHHHHHHHHHhccC-CcEEEEEeecCCCcccchHHHHHHHHHHHHHHHHHcCCC
Confidence 445555555 359999999999998777766665312111 2366665432111 00000000000000 0001111
Q ss_pred CCccccceeeecHHHHHHHH
Q psy12882 286 PDYLSGIAYIMSFKVARALY 305 (325)
Q Consensus 286 P~Y~~G~gYvmS~d~v~~L~ 305 (325)
.....|+.+++++++.+.+-
T Consensus 148 ~~~~~~~~~~~~r~~~~~i~ 167 (185)
T cd04179 148 ISDTQSGFRLFRREVLEALL 167 (185)
T ss_pred CcCCCCceeeeHHHHHHHHH
Confidence 23346777899999999986
No 44
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=31.96 E-value=1e+02 Score=30.44 Aligned_cols=91 Identities=13% Similarity=0.235 Sum_probs=50.7
Q ss_pred HHHHHHhhCCCcceEEEeCCceEecHHHH---HHHhcCCCCCCcceeEEEEeeeCCeeeecCCCCCCC----CccccCCC
Q psy12882 211 MLKFITHRCTHAQYIAKTDDDIYFNVHKL---YSILTSPKFKREKVVLAGFLIRKGRVIRTPTEKWYT----PEYMFSGD 283 (325)
Q Consensus 211 ~lkw~~~~c~~~~f~lK~DDD~fVnv~~L---~~~L~~~~~~~~~~l~~G~~~~~~~piR~~~sKwyv----p~~~y~~~ 283 (325)
++.|+-+.. +.++++-+|||+.+.++=+ .+.|.-...+.+=..+.|. | + .+++.. |...|-
T Consensus 88 aln~vF~~~-~~~~vIILEDDl~~sPdFf~yf~~~l~~y~~D~~v~~ISa~---N-----d-nG~~~~~~~~~~~lyr-- 155 (334)
T cd02514 88 ALTQTFNLF-GYSFVIILEDDLDIAPDFFSYFQATLPLLEEDPSLWCISAW---N-----D-NGKEHFVDDTPSLLYR-- 155 (334)
T ss_pred HHHHHHHhc-CCCEEEEECCCCccCHhHHHHHHHHHHHHhcCCCEEEEEee---c-----c-CCcccccCCCcceEEE--
Confidence 677776665 6999999999999998722 2222222222210112222 1 1 222221 332332
Q ss_pred CCCCccccceeeecHHHHHHHHHHhcCCCCCCCCc
Q psy12882 284 VYPDYLSGIAYIMSFKVARALYNVSLQLPLLHHED 318 (325)
Q Consensus 284 ~YP~Y~~G~gYvmS~d~v~~L~~~s~~~~~~~~ED 318 (325)
-.|+.|.|+++.+++-+.+ ...-|...+||
T Consensus 156 --s~ff~glGWml~r~~W~e~---~~~wp~~~WD~ 185 (334)
T cd02514 156 --TDFFPGLGWMLTRKLWKEL---EPKWPKAFWDD 185 (334)
T ss_pred --ecCCCchHHHHHHHHHHHh---CCCCCCCChHH
Confidence 2577799999999999887 22444444443
No 45
>COG4092 Predicted glycosyltransferase involved in capsule biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=29.37 E-value=1e+02 Score=29.94 Aligned_cols=75 Identities=13% Similarity=0.188 Sum_probs=49.2
Q ss_pred cccCCCCcchhHHHHHHHHhhCCCEEEcccc--ccCCchhHHHHHHHHHHHhhCCCcceEEEeCCceEecHHHHHHHh
Q psy12882 168 MSTLPSGKILDEELVDEEQANYQDLVQEDFV--DSYNNLTIASIMMLKFITHRCTHAQYIAKTDDDIYFNVHKLYSIL 243 (325)
Q Consensus 168 ~~~~p~~~~~~~~~l~~E~~~y~DIlq~df~--DsY~NLTlKt~~~lkw~~~~c~~~~f~lK~DDD~fVnv~~L~~~L 243 (325)
|.++-++.......|..=.....-.+-.++. +.+..-|.--..+..+..+.| +..+++.+|-|+|...+|..+.|
T Consensus 40 ~vi~~~~~~~~d~~i~~~i~~~~~~~yl~~~s~~~F~s~~~c~n~ga~Ysh~~~-~Sn~vlFlDvDc~~S~dnF~k~l 116 (346)
T COG4092 40 MVICLRAHEVMDRLIRSYIDPMPRVLYLDFGSPEPFASETICANNGADYSHEKC-ESNLVLFLDVDCFGSSDNFAKML 116 (346)
T ss_pred EEEEEecchhHHHHHHHHhccccceEEEecCCCccccchhhhhhccchhhhccc-cccEEEEEeccccccHHHHHHHH
Confidence 3333333333344444444444444555554 334444555667888999999 69999999999999999999888
No 46
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=27.89 E-value=59 Score=28.24 Aligned_cols=88 Identities=11% Similarity=-0.009 Sum_probs=46.5
Q ss_pred HHHHHhhCCCcceEEEeCCceEecHHHHHHHhcCCCCCCcceeEEEEeeeCCeeeecCCCCCCCC-----c--cccC---
Q psy12882 212 LKFITHRCTHAQYIAKTDDDIYFNVHKLYSILTSPKFKREKVVLAGFLIRKGRVIRTPTEKWYTP-----E--YMFS--- 281 (325)
Q Consensus 212 lkw~~~~c~~~~f~lK~DDD~fVnv~~L~~~L~~~~~~~~~~l~~G~~~~~~~piR~~~sKwyvp-----~--~~y~--- 281 (325)
+....+.+ ..+|++.+|+|..+.+..|...+.....+. ..+..|......... ..|-.. . ..+.
T Consensus 70 ~n~g~~~a-~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~-~~~v~g~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 143 (224)
T cd06442 70 YIEGFKAA-RGDVIVVMDADLSHPPEYIPELLEAQLEGG-ADLVIGSRYVEGGGV----EGWGLKRKLISRGANLLARLL 143 (224)
T ss_pred HHHHHHHc-CCCEEEEEECCCCCCHHHHHHHHHHHhcCC-CCEEEEeeeecCCcc----CCCcHHHHHHHHHHHHHHHHH
Confidence 33333444 458999999999998876666665421111 135555433211110 111000 0 0000
Q ss_pred CCCCCCccccceeeecHHHHHHHH
Q psy12882 282 GDVYPDYLSGIAYIMSFKVARALY 305 (325)
Q Consensus 282 ~~~YP~Y~~G~gYvmS~d~v~~L~ 305 (325)
...-...++|++.++++++++++-
T Consensus 144 ~~~~~~~~~~~~~~~~r~~~~~ig 167 (224)
T cd06442 144 LGRKVSDPTSGFRAYRREVLEKLI 167 (224)
T ss_pred cCCCCCCCCCccchhhHHHHHHHh
Confidence 011134567888899999999986
No 47
>PRK11204 N-glycosyltransferase; Provisional
Probab=22.82 E-value=7.2e+02 Score=24.25 Aligned_cols=59 Identities=14% Similarity=0.119 Sum_probs=37.2
Q ss_pred HHHHHHhhCCCEEEccccccCCchhHHHHHHHHHHHhhCCCcceEEEeCCceEecHHHHHHHhcC
Q psy12882 181 LVDEEQANYQDLVQEDFVDSYNNLTIASIMMLKFITHRCTHAQYIAKTDDDIYFNVHKLYSILTS 245 (325)
Q Consensus 181 ~l~~E~~~y~DIlq~df~DsY~NLTlKt~~~lkw~~~~c~~~~f~lK~DDD~fVnv~~L~~~L~~ 245 (325)
.+++..++|..+...+ ...|.. |. .+++...+.+ +.+|++..|+|+.+..+.|.+.+..
T Consensus 100 ~l~~~~~~~~~v~~i~---~~~n~G-ka-~aln~g~~~a-~~d~i~~lDaD~~~~~d~L~~l~~~ 158 (420)
T PRK11204 100 ILDRLAAQIPRLRVIH---LAENQG-KA-NALNTGAAAA-RSEYLVCIDGDALLDPDAAAYMVEH 158 (420)
T ss_pred HHHHHHHhCCcEEEEE---cCCCCC-HH-HHHHHHHHHc-CCCEEEEECCCCCCChhHHHHHHHH
Confidence 3334445555554333 233433 43 4566666666 6899999999999998877666554
No 48
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=22.77 E-value=49 Score=29.86 Aligned_cols=92 Identities=13% Similarity=0.085 Sum_probs=48.0
Q ss_pred HHHHHHhhCCCcceEEEeCCceEecHHHHHHHhcCCCCCCcceeEEEEeeeCCe--e----eecCCCCC--CCCccccCC
Q psy12882 211 MLKFITHRCTHAQYIAKTDDDIYFNVHKLYSILTSPKFKREKVVLAGFLIRKGR--V----IRTPTEKW--YTPEYMFSG 282 (325)
Q Consensus 211 ~lkw~~~~c~~~~f~lK~DDD~fVnv~~L~~~L~~~~~~~~~~l~~G~~~~~~~--p----iR~~~sKw--yvp~~~y~~ 282 (325)
++....... +.+|++.+|+|..+++..|.+.+....... -.+..|....... + .|.-.+++ +.-.....
T Consensus 84 a~n~g~~~a-~g~~i~~lD~D~~~~~~~l~~l~~~~~~~~-~~~v~g~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~- 160 (243)
T PLN02726 84 AYIHGLKHA-SGDFVVIMDADLSHHPKYLPSFIKKQRETG-ADIVTGTRYVKGGGVHGWDLRRKLTSRGANVLAQTLLW- 160 (243)
T ss_pred HHHHHHHHc-CCCEEEEEcCCCCCCHHHHHHHHHHHHhcC-CcEEEEccccCCCCcCCccHHHHHHHHHHHHHHHHHhC-
Confidence 444444444 578999999999999877766654322111 2366665332110 0 01000000 00000111
Q ss_pred CCCCCccccceeeecHHHHHHHHH
Q psy12882 283 DVYPDYLSGIAYIMSFKVARALYN 306 (325)
Q Consensus 283 ~~YP~Y~~G~gYvmS~d~v~~L~~ 306 (325)
... +.++|++.++++++++.+..
T Consensus 161 ~~~-~d~~g~~~~~rr~~~~~i~~ 183 (243)
T PLN02726 161 PGV-SDLTGSFRLYKRSALEDLVS 183 (243)
T ss_pred CCC-CcCCCcccceeHHHHHHHHh
Confidence 111 23578888999999999853
No 49
>PF08525 OapA_N: Opacity-associated protein A N-terminal motif; InterPro: IPR013731 This domain is found in the Haemophilus influenzae opacity-associated protein (OapA). It is required for efficient nasopharyngeal mucosal colonisation, and its expression is associated with a distinctive transparent colony phenotype. OapA is thought to be a secreted protein, and its expression exhibits high-frequency phase variation [, ]. This motif occurs at the N terminus of these proteins. It contains a conserved histidine followed by a run of hydrophobic residues. Many of the proteins in this entry are unassigned peptidases belonging to MEROPS peptidase family M23B.
Probab=22.60 E-value=1.2e+02 Score=19.05 Aligned_cols=26 Identities=23% Similarity=0.436 Sum_probs=17.9
Q ss_pred CcccchhHHHHHHHHHHHHHHHHhhhc
Q psy12882 1 MTLVPTYSKFLLGTLISITFIYLLYLP 27 (325)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~l~~~~ 27 (325)
|..+|+.-+..+.+++.++++ ++.+|
T Consensus 3 ~~~LP~~Hr~~l~~l~~v~l~-ll~~P 28 (30)
T PF08525_consen 3 FNPLPKLHRRALIALSAVVLV-LLLWP 28 (30)
T ss_pred cccCCHHHHHHHHHHHHHHHH-HHhcc
Confidence 345788888888887777777 44445
No 50
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=22.20 E-value=3.7e+02 Score=23.02 Aligned_cols=30 Identities=7% Similarity=0.003 Sum_probs=22.0
Q ss_pred HHhhCCCcceEEEeCCceEecHHHHHHHhcC
Q psy12882 215 ITHRCTHAQYIAKTDDDIYFNVHKLYSILTS 245 (325)
Q Consensus 215 ~~~~c~~~~f~lK~DDD~fVnv~~L~~~L~~ 245 (325)
..+.+ +.+|++.+|+|..+....+.+.+..
T Consensus 67 g~~~a-~~~~i~~~D~D~~~~~~~l~~l~~~ 96 (221)
T cd02522 67 GAAAA-RGDWLLFLHADTRLPPDWDAAIIET 96 (221)
T ss_pred HHHhc-cCCEEEEEcCCCCCChhHHHHHHHH
Confidence 34445 4799999999999987666665443
No 51
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=21.73 E-value=7.2e+02 Score=23.83 Aligned_cols=91 Identities=11% Similarity=0.054 Sum_probs=49.8
Q ss_pred HHHHHhhCCCcceEEEeCCceEecHHHHHHHhcCCCCCCcceeEEEEeee-CCeeeecCCCCCCCCc-cccCCCCCCCcc
Q psy12882 212 LKFITHRCTHAQYIAKTDDDIYFNVHKLYSILTSPKFKREKVVLAGFLIR-KGRVIRTPTEKWYTPE-YMFSGDVYPDYL 289 (325)
Q Consensus 212 lkw~~~~c~~~~f~lK~DDD~fVnv~~L~~~L~~~~~~~~~~l~~G~~~~-~~~piR~~~sKwyvp~-~~y~~~~YP~Y~ 289 (325)
++...+++ +.+|++.+|.|.-.++..+.+++..... .. .+..|.... ...+.|.-.++.+--- ....+..+++..
T Consensus 82 ~~~G~~~A-~gd~vv~~DaD~q~~p~~i~~l~~~~~~-~~-DvV~~~r~~~~~~~~r~~~s~~~~~l~~~~~g~~~~d~~ 158 (325)
T PRK10714 82 IMAGFSHV-TGDLIITLDADLQNPPEEIPRLVAKADE-GY-DVVGTVRQNRQDSWFRKTASKMINRLIQRTTGKAMGDYG 158 (325)
T ss_pred HHHHHHhC-CCCEEEEECCCCCCCHHHHHHHHHHHHh-hC-CEEEEEEcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCC
Confidence 33444455 6899999999999998877777665421 11 244444221 1122222222211100 011244556665
Q ss_pred ccceeeecHHHHHHHHH
Q psy12882 290 SGIAYIMSFKVARALYN 306 (325)
Q Consensus 290 ~G~gYvmS~d~v~~L~~ 306 (325)
+|. -++++++++.+..
T Consensus 159 ~gf-r~~~r~~~~~l~~ 174 (325)
T PRK10714 159 CML-RAYRRHIVDAMLH 174 (325)
T ss_pred cCe-EEEcHHHHHHHHH
Confidence 553 4899999999853
No 52
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=20.59 E-value=2.1e+02 Score=24.96 Aligned_cols=94 Identities=11% Similarity=0.042 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHhhCCCcceEEEeCCceEecHHHHHHHhcCCCCCCcceeEEEEeeeCCeeeecCCCC---CCC---Cccc
Q psy12882 206 IASIMMLKFITHRCTHAQYIAKTDDDIYFNVHKLYSILTSPKFKREKVVLAGFLIRKGRVIRTPTEK---WYT---PEYM 279 (325)
Q Consensus 206 lKt~~~lkw~~~~c~~~~f~lK~DDD~fVnv~~L~~~L~~~~~~~~~~l~~G~~~~~~~piR~~~sK---wyv---p~~~ 279 (325)
-|.-..+..+.... +.++++.+|+|+.|+.+-|.+.+....... -.+..|.-. ..|.+.-.+. -++ +.-
T Consensus 17 ~Kv~nL~~~~~~~a-~~d~~~~~DsDi~v~p~~L~~lv~~l~~p~-vglVt~~~~--~~~~~~~~~~l~~~~~~~~~~~- 91 (175)
T PF13506_consen 17 PKVNNLAQGLEAGA-KYDYLVISDSDIRVPPDYLRELVAPLADPG-VGLVTGLPR--GVPARGFWSRLEAAFFNFLPGV- 91 (175)
T ss_pred hHHHHHHHHHHhhC-CCCEEEEECCCeeECHHHHHHHHHHHhCCC-CcEEEeccc--ccCCcCHHHHHHHHHHhHHHHH-
Confidence 44444444444323 789999999999999887777665443211 123333221 1111110000 011 110
Q ss_pred cCCCCCCCccccceeeecHHHHHHH
Q psy12882 280 FSGDVYPDYLSGIAYIMSFKVARAL 304 (325)
Q Consensus 280 y~~~~YP~Y~~G~gYvmS~d~v~~L 304 (325)
+..-.-.++|.|+.+++.+++++++
T Consensus 92 ~~a~~~~~~~~G~~m~~rr~~L~~~ 116 (175)
T PF13506_consen 92 LQALGGAPFAWGGSMAFRREALEEI 116 (175)
T ss_pred HHHhcCCCceecceeeeEHHHHHHc
Confidence 1111246889999999999999887
No 53
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=20.44 E-value=5.2e+02 Score=21.72 Aligned_cols=34 Identities=18% Similarity=0.162 Sum_probs=25.0
Q ss_pred HHHHHHhhCCCcceEEEeCCceEecHHHHHHHhcC
Q psy12882 211 MLKFITHRCTHAQYIAKTDDDIYFNVHKLYSILTS 245 (325)
Q Consensus 211 ~lkw~~~~c~~~~f~lK~DDD~fVnv~~L~~~L~~ 245 (325)
++......+ +.+|++.+|+|..+....|...+..
T Consensus 71 a~N~g~~~a-~gd~i~~lD~Dd~~~~~~l~~~~~~ 104 (201)
T cd04195 71 ALNEGLKHC-TYDWVARMDTDDISLPDRFEKQLDF 104 (201)
T ss_pred HHHHHHHhc-CCCEEEEeCCccccCcHHHHHHHHH
Confidence 344445555 6899999999999988777665554
Done!