Query psy12882
Match_columns 325
No_of_seqs 237 out of 1311
Neff 6.2
Searched_HMMs 29240
Date Fri Aug 16 22:12:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12882.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12882hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2j0a_A Beta-1,3-N-acetylglucos 99.9 1E-21 3.4E-26 184.7 10.7 170 78-321 14-194 (280)
2 1qg8_A Protein (spore coat pol 82.1 19 0.00064 30.8 12.1 90 210-305 78-172 (255)
3 1xhb_A Polypeptide N-acetylgal 68.8 73 0.0025 30.2 13.4 33 211-244 105-137 (472)
4 4fix_A UDP-galactofuranosyl tr 67.2 7.7 0.00026 39.9 6.2 34 210-244 258-291 (657)
5 2ffu_A Ppgalnact-2, polypeptid 32.9 34 0.0012 33.1 4.1 34 210-244 136-169 (501)
6 2z86_A Chondroitin synthase; G 32.6 3.2E+02 0.011 26.7 11.4 33 211-244 165-197 (625)
7 2c0n_A A197; thermophil protei 23.9 3.6E+02 0.012 23.5 10.0 115 180-309 15-136 (203)
8 3bcv_A Putative glycosyltransf 19.2 3.8E+02 0.013 21.9 11.7 33 211-244 75-107 (240)
9 2le2_A P56; UDG inhibition, DN 19.2 19 0.00065 24.6 -0.5 11 192-202 1-11 (56)
10 2z86_A Chondroitin synthase; G 19.2 6.3E+02 0.022 24.5 13.6 33 211-244 445-477 (625)
No 1
>2j0a_A Beta-1,3-N-acetylglucosaminyltransferase manic FR; glycosyltransferase, developmental protein, transmembrane, G apparatus, notch signaling; 1.8A {Mus musculus} PDB: 2j0b_A*
Probab=99.86 E-value=1e-21 Score=184.75 Aligned_cols=170 Identities=15% Similarity=0.170 Sum_probs=108.9
Q ss_pred eEEEEEEcCCC-CHHHHHHHHHHhhccCCCceEEEEEeccCCCccchhhhhhhhhccCCCchhhhhhhhhhcchhhhhhh
Q psy12882 78 TLLIVVSSAVG-NFSMRRAVRETWAKELPSQTAVIFFIGRTENQTLVVSDQIKWYNRLEPPYIAFVVILARVSTWFRIFL 156 (325)
Q Consensus 78 ~LlI~V~S~~~-n~~rR~aIReTWg~~~~~~v~~~FlvG~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 156 (325)
.++++|+|+++ +.+||++||+|||+..+.. .|+.+..++..
T Consensus 14 ~I~~~V~T~~~~~~~R~~~I~~TW~~~~~~~---~fifsd~~d~~----------------------------------- 55 (280)
T 2j0a_A 14 DIFIAVKTTWAFHRSRLDLLLDTWVSRIRQQ---TFIFTDSPDER----------------------------------- 55 (280)
T ss_dssp GEEEEEECCGGGTTTTHHHHHHTGGGGSGGG---EEEEESSCCHH-----------------------------------
T ss_pred cEEEEEECcHHHHHHHHHHHHHHHhccCCCc---eEEEcCCCccc-----------------------------------
Confidence 47899999998 4567799999999875422 23333222111
Q ss_pred hhhccCCCccccccCCCCcchhHHHHHHHHhhCCCEEEccccc--cCCchhHHHHHHHHHHHhhCCCcceEEEeCCceEe
Q psy12882 157 LTIQRGNCSSIMSTLPSGKILDEELVDEEQANYQDLVQEDFVD--SYNNLTIASIMMLKFITHRCTHAQYIAKTDDDIYF 234 (325)
Q Consensus 157 ~g~~~~~~~~~~~~~p~~~~~~~~~l~~E~~~y~DIlq~df~D--sY~NLTlKt~~~lkw~~~~c~~~~f~lK~DDD~fV 234 (325)
+.. ...+++++.++.+ ++.+++.|+...++|.. +++++|++|+|||+||
T Consensus 56 -------------------------l~~--~~~~~~~~~~~~~~~~~~~l~~K~~~~~~~~l--~~~~~Wf~~~DDDtyv 106 (280)
T 2j0a_A 56 -------------------------LQE--RLGPHLVVTQCSAEHSHPALSCKMAAEFDAFL--VSGLRWFCHVDDDNYV 106 (280)
T ss_dssp -------------------------HHH--HHGGGEEECCC-------CCCHHHHHHHHHHH--HHTCSEEEEEETTEEE
T ss_pred -------------------------ccc--cccccceeccccccccccchHHHHHHHHHHHh--CCCCcEEEEeCCCcEE
Confidence 111 1245788877754 67889999999998754 2689999999999999
Q ss_pred cHHHHHHHhcCCCCCCcceeEEEEeeeCCeeeecCCCCCCCCccccCCCCCCCcc-ccceeeecHHHHHHHHHHhcCC--
Q psy12882 235 NVHKLYSILTSPKFKREKVVLAGFLIRKGRVIRTPTEKWYTPEYMFSGDVYPDYL-SGIAYIMSFKVARALYNVSLQL-- 311 (325)
Q Consensus 235 nv~~L~~~L~~~~~~~~~~l~~G~~~~~~~piR~~~sKwyvp~~~y~~~~YP~Y~-~G~gYvmS~d~v~~L~~~s~~~-- 311 (325)
|++||+++|...... +.+|+|... ...|+|. ++++|...++...|+ || +|+||+||++++++|+..+...
T Consensus 107 ~~~nL~~~L~~~d~~--~~~YiG~~~-~~~~~~~---~~~~~~~~~~~~~~~-y~~GGaG~vlSr~~l~~l~~~~~~~~~ 179 (280)
T 2j0a_A 107 NPKALLQLLKTFPQD--RDVYVGKPS-LNRPIHA---SELQSKQRTKLVRFW-FATGGAGFCINRQLALKMVPWASGSHF 179 (280)
T ss_dssp CHHHHHHHHTTSCTT--SCCEEECEE-C----------------------CC-EECGGGCEEEEHHHHHHHHHHHTTCTT
T ss_pred cHHHHHHHHHhCCCC--CCEEEEEec-cCccccc---cccCccccccccccC-cccCCCEEEECHHHHHHHHHhhccccc
Confidence 999999999977544 469999987 4567663 566666555555564 66 5789999999999999865443
Q ss_pred -----CCCCCCcEEE
Q psy12882 312 -----PLLHHEDVFI 321 (325)
Q Consensus 312 -----~~~~~EDVyi 321 (325)
.....||++|
T Consensus 180 ~~~~~~~~~~dD~~l 194 (280)
T 2j0a_A 180 VDTSALIRLPDDCTV 194 (280)
T ss_dssp SCCTTTTTSCHHHHH
T ss_pred ccccccCCCCccHHH
Confidence 2344689987
No 2
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=82.05 E-value=19 Score=30.78 Aligned_cols=90 Identities=12% Similarity=0.170 Sum_probs=50.6
Q ss_pred HHHHHHHhhCCCcceEEEeCCceEecHHHHHHHhcCCCCCCcceeEEEEeee-----CCeeeecCCCCCCCCccccCCCC
Q psy12882 210 MMLKFITHRCTHAQYIAKTDDDIYFNVHKLYSILTSPKFKREKVVLAGFLIR-----KGRVIRTPTEKWYTPEYMFSGDV 284 (325)
Q Consensus 210 ~~lkw~~~~c~~~~f~lK~DDD~fVnv~~L~~~L~~~~~~~~~~l~~G~~~~-----~~~piR~~~sKwyvp~~~y~~~~ 284 (325)
.++....+.+ +.+|++.+|||.++..+.|...+........-.+..|.... ...++. .+..|..... ..
T Consensus 78 ~a~N~gi~~a-~g~~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~----~~~~~~~~~~-~~ 151 (255)
T 1qg8_A 78 ALINQAIEMA-EGEYITYATDDNIYMPDRLLKMVRELDTHPEKAVIYSASKTYHLNENRDIVK----ETVRPAAQVT-WN 151 (255)
T ss_dssp HHHHHHHHHC-CCSEEEEEETTEEECTTHHHHHHHHHHHCTTCCEEEEEEEEEEEC---CEEE----EEEECCCSCB-SC
T ss_pred HHHHHHHHHc-CCCEEEEeCCCCccChHHHHHHHHHHHhCCCceEEEeceEEEEeCCCCcchh----hccCchHHHH-Hh
Confidence 3555666677 68999999999999877665554322111111245554321 111111 1111111111 13
Q ss_pred CCCccccceeeecHHHHHHHH
Q psy12882 285 YPDYLSGIAYIMSFKVARALY 305 (325)
Q Consensus 285 YP~Y~~G~gYvmS~d~v~~L~ 305 (325)
...++.|++.++.+++..++-
T Consensus 152 ~~~~~~~~~~~~rr~~~~~~g 172 (255)
T 1qg8_A 152 APCAIDHCSVMHRYSVLEKVK 172 (255)
T ss_dssp CTTTSCGGGEEEETHHHHHHH
T ss_pred hcCCCccceEEEEHHHHHhhc
Confidence 456678999999999999874
No 3
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=68.83 E-value=73 Score=30.24 Aligned_cols=33 Identities=15% Similarity=-0.070 Sum_probs=23.9
Q ss_pred HHHHHHhhCCCcceEEEeCCceEecHHHHHHHhc
Q psy12882 211 MLKFITHRCTHAQYIAKTDDDIYFNVHKLYSILT 244 (325)
Q Consensus 211 ~lkw~~~~c~~~~f~lK~DDD~fVnv~~L~~~L~ 244 (325)
+.....+.+ +.+|++..|+|+.+...-|...+.
T Consensus 105 a~N~g~~~A-~gd~i~flD~D~~~~p~~L~~ll~ 137 (472)
T 1xhb_A 105 ARLKGAAVS-RGQVITFLDAHCECTAGWLEPLLA 137 (472)
T ss_dssp HHHHHHHHC-CSSEEEEEESSEEECTTCHHHHHH
T ss_pred HHHHHHHhc-cCCeEEEECCCeEeCccHHHHHHH
Confidence 444455556 589999999999998765555443
No 4
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=67.18 E-value=7.7 Score=39.86 Aligned_cols=34 Identities=21% Similarity=0.237 Sum_probs=25.3
Q ss_pred HHHHHHHhhCCCcceEEEeCCceEecHHHHHHHhc
Q psy12882 210 MMLKFITHRCTHAQYIAKTDDDIYFNVHKLYSILT 244 (325)
Q Consensus 210 ~~lkw~~~~c~~~~f~lK~DDD~fVnv~~L~~~L~ 244 (325)
.+++.+.... +++|++.+|||+.+..+.|...+.
T Consensus 258 ~Gl~~A~g~~-~~dyIlfLD~D~~~~pd~L~~ll~ 291 (657)
T 4fix_A 258 RVMYEALKNT-DCQQILFMDDDIRLEPDSILRVLA 291 (657)
T ss_dssp HHHHHHHHHC-CCSEEEEECSSEEECTHHHHHHHH
T ss_pred HHHHHHHhcC-CCCEEEEECCCCccChhHHHHHHH
Confidence 3566666543 689999999999999876665543
No 5
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=32.87 E-value=34 Score=33.10 Aligned_cols=34 Identities=18% Similarity=0.030 Sum_probs=24.8
Q ss_pred HHHHHHHhhCCCcceEEEeCCceEecHHHHHHHhc
Q psy12882 210 MMLKFITHRCTHAQYIAKTDDDIYFNVHKLYSILT 244 (325)
Q Consensus 210 ~~lkw~~~~c~~~~f~lK~DDD~fVnv~~L~~~L~ 244 (325)
.++....+.+ +.+|++.+|+|+.+.+.-|...+.
T Consensus 136 ~A~N~G~~~A-~gd~i~flD~D~~~~p~~L~~ll~ 169 (501)
T 2ffu_A 136 RSRVRGADAA-QAKVLTFLDSHCECNEHWLEPLLE 169 (501)
T ss_dssp HHHHHHHHHC-CSSEEEECCSSEEECTTCHHHHHH
T ss_pred HHHHHHHHhc-CCCEEEEECCCcccCccHHHHHHH
Confidence 4555555666 689999999999998765555543
No 6
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=32.60 E-value=3.2e+02 Score=26.67 Aligned_cols=33 Identities=18% Similarity=0.098 Sum_probs=23.9
Q ss_pred HHHHHHhhCCCcceEEEeCCceEecHHHHHHHhc
Q psy12882 211 MLKFITHRCTHAQYIAKTDDDIYFNVHKLYSILT 244 (325)
Q Consensus 211 ~lkw~~~~c~~~~f~lK~DDD~fVnv~~L~~~L~ 244 (325)
++....+.+ +.+|++.+|+|+.+....|...+.
T Consensus 165 a~N~g~~~a-~g~~v~~lD~D~~~~~~~l~~~~~ 197 (625)
T 2z86_A 165 VRNLGLRAA-KYNYVAILDCDMAPNPLWVQSYME 197 (625)
T ss_dssp HHHHHHHHC-CSSEEEEECTTEEECTTHHHHHHH
T ss_pred HHHHHHHhC-CcCEEEEECCCCCCCHHHHHHHHH
Confidence 444555556 689999999999998766655443
No 7
>2c0n_A A197; thermophil protein, thermophilic virus, STIV, sulfolobus turreted ICOS virus; 1.86A {Sulfolobus turreted icosahedral virus}
Probab=23.89 E-value=3.6e+02 Score=23.51 Aligned_cols=115 Identities=9% Similarity=0.007 Sum_probs=66.2
Q ss_pred HHHHHHHhhCCCEEEccccccCCchhH-HHHHHHHHHHhhCCCcceEEEeCCc---eEecHHHHHHHhcCCCCCCcceeE
Q psy12882 180 ELVDEEQANYQDLVQEDFVDSYNNLTI-ASIMMLKFITHRCTHAQYIAKTDDD---IYFNVHKLYSILTSPKFKREKVVL 255 (325)
Q Consensus 180 ~~l~~E~~~y~DIlq~df~DsY~NLTl-Kt~~~lkw~~~~c~~~~f~lK~DDD---~fVnv~~L~~~L~~~~~~~~~~l~ 255 (325)
-.++.+..+.|==++..+.++. .|. .-.+.=.|+.+ .++++++.+|-| +-.++..+.++|... ..+.
T Consensus 15 l~l~~~l~~~gi~~~l~~~~Sl--I~raRN~lv~~Fl~~--~~~dhllfIDAD~~~I~FdPe~V~rLl~~g-----~DVV 85 (203)
T 2c0n_A 15 LPLIDFLVKNDIEYVILSRRNH--VAVQREIALDMFLEM--KDYDTLAFLDEDVVPIEIDFQKVEAKFNEG-----YDVV 85 (203)
T ss_dssp HHHHHHHHHTTCCEEEECCCSC--HHHHHHHHHHHHHHC--TTCCEEEEECTTEEEEECCHHHHHHHHHHT-----CSEE
T ss_pred hHHHHHHHhCCCeEEEEccccc--hHHHHHHHHHHHHhc--CCCCEEEEEeCCCCccccCHHHHHHHHhCC-----CCEE
Confidence 3456666665532444444433 222 22333345554 468999999999 999999999999542 2377
Q ss_pred EEEeeeCCeeeecCCCCCCCCccccCCCCC---CCccccceeeecHHHHHHHHHHhc
Q psy12882 256 AGFLIRKGRVIRTPTEKWYTPEYMFSGDVY---PDYLSGIAYIMSFKVARALYNVSL 309 (325)
Q Consensus 256 ~G~~~~~~~piR~~~sKwyvp~~~y~~~~Y---P~Y~~G~gYvmS~d~v~~L~~~s~ 309 (325)
+|.-...... . .+.+ ...|....- =.||.+|.-++++++.++|.+...
T Consensus 86 ~GsYp~K~~~--~-~s~~---a~~y~~~i~~~~V~d~~tGF~lIkR~V~e~L~~p~f 136 (203)
T 2c0n_A 86 CGYYYLKTLR--G-YSVY---RKDWEKEIFDGEVNGCGLGFTFIKREFLEKIKRPAF 136 (203)
T ss_dssp EEECBCTTSS--S-BSEE---SSSBCSSCCCEECSEECSSEEEEEHHHHTTSCSSCC
T ss_pred EEEeeccCCC--c-cchH---HHHHHHhccCceeeeccccEEEEhHHHHHHHhhhhh
Confidence 7764322110 0 0000 001221111 157888889999999999855533
No 8
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=19.22 E-value=3.8e+02 Score=21.90 Aligned_cols=33 Identities=15% Similarity=0.192 Sum_probs=24.7
Q ss_pred HHHHHHhhCCCcceEEEeCCceEecHHHHHHHhc
Q psy12882 211 MLKFITHRCTHAQYIAKTDDDIYFNVHKLYSILT 244 (325)
Q Consensus 211 ~lkw~~~~c~~~~f~lK~DDD~fVnv~~L~~~L~ 244 (325)
+.....+.+ +.+|++.+|+|.++....|.+.+.
T Consensus 75 a~N~g~~~a-~g~~i~~lD~Dd~~~~~~l~~l~~ 107 (240)
T 3bcv_A 75 ACNSGLDVA-TGEYVAFCDSDDYVDSDMYMTMYN 107 (240)
T ss_dssp HHHHHHHHC-CSSEEEECCTTCCCCTTHHHHHHH
T ss_pred HHHHHHHHc-CCCEEEEECCCCcCCHHHHHHHHH
Confidence 455555666 679999999999998776655543
No 9
>2le2_A P56; UDG inhibition, DNA mimicry, hydrolas inhibitor; NMR {Bacillus phage PHI29}
Probab=19.18 E-value=19 Score=24.58 Aligned_cols=11 Identities=73% Similarity=1.265 Sum_probs=8.5
Q ss_pred EEEccccccCC
Q psy12882 192 LVQEDFVDSYN 202 (325)
Q Consensus 192 Ilq~df~DsY~ 202 (325)
++|-||+|||.
T Consensus 1 mvqndf~dsy~ 11 (56)
T 2le2_A 1 MVQNDFVDSYD 11 (56)
T ss_dssp CCCSSSCSSEE
T ss_pred Cccccccccee
Confidence 46788888885
No 10
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=19.16 E-value=6.3e+02 Score=24.49 Aligned_cols=33 Identities=18% Similarity=0.285 Sum_probs=24.8
Q ss_pred HHHHHHhhCCCcceEEEeCCceEecHHHHHHHhc
Q psy12882 211 MLKFITHRCTHAQYIAKTDDDIYFNVHKLYSILT 244 (325)
Q Consensus 211 ~lkw~~~~c~~~~f~lK~DDD~fVnv~~L~~~L~ 244 (325)
++....+.+ +.+|++.+|+|..+....|...+.
T Consensus 445 a~n~g~~~a-~g~~i~~ld~D~~~~~~~l~~~~~ 477 (625)
T 2z86_A 445 ASNTAVRLC-RGFYIGQLDSDDFLEPDAVELCLD 477 (625)
T ss_dssp HHHHHHHHC-CSSEEEECCTTCEECTTHHHHHHH
T ss_pred HHHHHHHhc-CCCEEEEECCCcccChhHHHHHHH
Confidence 455555666 679999999999998877665543
Done!