Query psy12882
Match_columns 325
No_of_seqs 237 out of 1311
Neff 6.2
Searched_HMMs 13730
Date Fri Aug 16 22:12:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12882.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/12882hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1qg8a_ c.68.1.1 (A:) Spore co 65.6 3.6 0.00026 33.5 5.1 89 211-308 79-175 (255)
2 d1omza_ c.68.1.15 (A:) Alpha-1 60.2 5.5 0.0004 30.8 5.1 32 214-246 75-106 (265)
3 d1xhba2 c.68.1.17 (A:95-422) P 53.2 4.8 0.00035 34.2 3.8 32 211-243 98-129 (328)
4 d1fo8a_ c.68.1.10 (A:) N-acety 19.0 45 0.0033 29.3 4.2 61 179-239 43-117 (343)
5 d1sctb_ a.1.1.2 (B:) Hemoglobi 16.6 29 0.0021 26.0 1.9 16 89-104 12-27 (150)
6 d1spgb_ a.1.1.2 (B:) Hemoglobi 13.9 33 0.0024 25.8 1.7 14 90-103 5-18 (147)
7 d1wmub_ a.1.1.2 (B:) Hemoglobi 13.1 36 0.0027 25.5 1.7 14 90-103 5-18 (146)
8 d1cg5b_ a.1.1.2 (B:) Hemoglobi 12.9 35 0.0026 25.5 1.5 14 90-103 5-18 (141)
9 d1v4wb_ a.1.1.2 (B:) Hemoglobi 12.6 38 0.0028 25.3 1.7 13 91-103 6-18 (146)
10 d2aa1b1 a.1.1.2 (B:1-146) Hemo 12.5 37 0.0027 25.3 1.5 14 90-103 5-18 (146)
No 1
>d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis protein SpsA {Bacillus subtilis [TaxId: 1423]}
Probab=65.60 E-value=3.6 Score=33.47 Aligned_cols=89 Identities=12% Similarity=0.128 Sum_probs=47.5
Q ss_pred HHHHHHhhCCCcceEEEeCCceEecHHHHHH---HhcCCCCCCcceeEEEEeee-----CCeeeecCCCCCCCCccccCC
Q psy12882 211 MLKFITHRCTHAQYIAKTDDDIYFNVHKLYS---ILTSPKFKREKVVLAGFLIR-----KGRVIRTPTEKWYTPEYMFSG 282 (325)
Q Consensus 211 ~lkw~~~~c~~~~f~lK~DDD~fVnv~~L~~---~L~~~~~~~~~~l~~G~~~~-----~~~piR~~~sKwyvp~~~y~~ 282 (325)
++....+.| +.+|++.+|+|.++....|.. .+...+.. .++.|.... +..... +...+.... .
T Consensus 79 a~N~gi~~a-~g~~i~~lD~Dd~~~p~~l~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~----~~~~~~~~~-~ 149 (255)
T d1qg8a_ 79 LINQAIEMA-EGEYITYATDDNIYMPDRLLKMVRELDTHPEK---AVIYSASKTYHLNENRDIVK----ETVRPAAQV-T 149 (255)
T ss_dssp HHHHHHHHC-CCSEEEEEETTEEECTTHHHHHHHHHHHCTTC---CEEEEEEEEEEEC---CEEE----EEEECCCSC-B
T ss_pred ccccccccc-ccccccccccccccccchHHHHHHHHHhCCCC---CeEeecceeeeeCCCCcEee----eecccchhh-h
Confidence 445566677 689999999999998665554 33322211 244443211 111111 000011100 1
Q ss_pred CCCCCccccceeeecHHHHHHHHHHh
Q psy12882 283 DVYPDYLSGIAYIMSFKVARALYNVS 308 (325)
Q Consensus 283 ~~YP~Y~~G~gYvmS~d~v~~L~~~s 308 (325)
...+....+++.++++++.+++....
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (255)
T d1qg8a_ 150 WNAPCAIDHCSVMHRYSVLEKVKEKF 175 (255)
T ss_dssp SCCTTTSCGGGEEEETHHHHHHHHHH
T ss_pred hhhcccccchhHHHHHHHHHHHHHhh
Confidence 12334456778899999999987654
No 2
>d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=60.21 E-value=5.5 Score=30.76 Aligned_cols=32 Identities=13% Similarity=0.115 Sum_probs=24.1
Q ss_pred HHHhhCCCcceEEEeCCceEecHHHHHHHhcCC
Q psy12882 214 FITHRCTHAQYIAKTDDDIYFNVHKLYSILTSP 246 (325)
Q Consensus 214 w~~~~c~~~~f~lK~DDD~fVnv~~L~~~L~~~ 246 (325)
...+.+ +.+|++.+|||.++..+.|.+.+...
T Consensus 75 ~~~~~a-~ge~i~~lD~D~~~~~~~l~~l~~~~ 106 (265)
T d1omza_ 75 QVFPEV-ETNAVLMVDDDTLISAQDLVFAFSIW 106 (265)
T ss_dssp SCCTTC-CSSEEEEECTTEEECHHHHHHHHHHH
T ss_pred hhHHhC-CcCEEEEeCcccCCCHHHHHHHHHHH
Confidence 334455 67999999999999988777665543
No 3
>d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=53.23 E-value=4.8 Score=34.19 Aligned_cols=32 Identities=16% Similarity=-0.078 Sum_probs=24.0
Q ss_pred HHHHHHhhCCCcceEEEeCCceEecHHHHHHHh
Q psy12882 211 MLKFITHRCTHAQYIAKTDDDIYFNVHKLYSIL 243 (325)
Q Consensus 211 ~lkw~~~~c~~~~f~lK~DDD~fVnv~~L~~~L 243 (325)
+.....+.+ +.+|++.+|+|+.+...-|...+
T Consensus 98 a~N~Gi~~a-~gd~i~flD~D~~~~p~~l~~l~ 129 (328)
T d1xhba2 98 ARLKGAAVS-RGQVITFLDAHCECTAGWLEPLL 129 (328)
T ss_dssp HHHHHHHHC-CSSEEEEEESSEEECTTCHHHHH
T ss_pred HHHHHHHhh-hcceeeecCcccccChhHHHHHH
Confidence 455555666 68999999999999886655443
No 4
>d1fo8a_ c.68.1.10 (A:) N-acetylglucosaminyltransferase I {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=19.04 E-value=45 Score=29.32 Aligned_cols=61 Identities=13% Similarity=0.044 Sum_probs=36.0
Q ss_pred HHHHHHHHhhCCCEE----EccccccCC-------chhHHHHHHHHHHHhhC---CCcceEEEeCCceEecHHHH
Q psy12882 179 EELVDEEQANYQDLV----QEDFVDSYN-------NLTIASIMMLKFITHRC---THAQYIAKTDDDIYFNVHKL 239 (325)
Q Consensus 179 ~~~l~~E~~~y~DIl----q~df~DsY~-------NLTlKt~~~lkw~~~~c---~~~~f~lK~DDD~fVnv~~L 239 (325)
.+...+|+..|++.+ +.+..+.-. +-.++.-..++|+.+.. .+++.++...||+.+.++-+
T Consensus 43 ~~~~~~~v~~~~~~v~~I~~~~~~~~~~~~~~~k~~~n~giarhy~~AL~~~F~~~~~~~~IiLEDDl~~spdFf 117 (343)
T d1fo8a_ 43 HEETAQVIASYGSAVTHIRQPDLSNIAVQPDHRKFQGYYKIARHYRWALGQIFHNFNYPAAVVVEDDLEVAPDFF 117 (343)
T ss_dssp CHHHHHHHHTTGGGSEEEECSCCCCCCCCTTCGGGHHHHHHHHHHHHHHHHHHTTSCCSEEEEEETTEEECTTHH
T ss_pred chhHHHHHHHHHHHHHHhcCCccccceecchhhcccchhHHHHHHHHHHHHHhcccCCceEEEEecCceeeHHHH
Confidence 456677888887633 223322111 11334444566655533 24689999999999988644
No 5
>d1sctb_ a.1.1.2 (B:) Hemoglobin I {Ark clam (Scapharca inaequivalvis) [TaxId: 6561]}
Probab=16.55 E-value=29 Score=25.95 Aligned_cols=16 Identities=19% Similarity=0.341 Sum_probs=14.2
Q ss_pred CHHHHHHHHHHhhccC
Q psy12882 89 NFSMRRAVRETWAKEL 104 (325)
Q Consensus 89 n~~rR~aIReTWg~~~ 104 (325)
|.+++++||+||....
T Consensus 12 ~a~qk~li~~SW~~v~ 27 (150)
T d1sctb_ 12 NADQKDLLRMSWGVLS 27 (150)
T ss_dssp CHHHHHHHHHHHHHHG
T ss_pred CHHHHHHHHHHHHHHH
Confidence 7899999999999764
No 6
>d1spgb_ a.1.1.2 (B:) Hemoglobin, beta-chain {Fish (Leiostomus xanthurus) [TaxId: 59837]}
Probab=13.93 E-value=33 Score=25.84 Aligned_cols=14 Identities=29% Similarity=0.496 Sum_probs=11.8
Q ss_pred HHHHHHHHHHhhcc
Q psy12882 90 FSMRRAVRETWAKE 103 (325)
Q Consensus 90 ~~rR~aIReTWg~~ 103 (325)
-++|++||+||+..
T Consensus 5 ~~ek~lI~~sW~~v 18 (147)
T d1spgb_ 5 DAERAAIKALWGKI 18 (147)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhcC
Confidence 36899999999864
No 7
>d1wmub_ a.1.1.2 (B:) Hemoglobin, beta-chain {Aldabra giant tortoise (Geochelone gigantea) [TaxId: 167804]}
Probab=13.14 E-value=36 Score=25.45 Aligned_cols=14 Identities=21% Similarity=0.408 Sum_probs=11.6
Q ss_pred HHHHHHHHHHhhcc
Q psy12882 90 FSMRRAVRETWAKE 103 (325)
Q Consensus 90 ~~rR~aIReTWg~~ 103 (325)
-+++++||+||+..
T Consensus 5 ~~ek~~I~~sW~~v 18 (146)
T d1wmub_ 5 SEEKQYITSLWAKV 18 (146)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhcC
Confidence 36899999999864
No 8
>d1cg5b_ a.1.1.2 (B:) Hemoglobin, beta-chain {Cartilaginous fish akaei (Dasyatis akajei) [TaxId: 31902]}
Probab=12.88 E-value=35 Score=25.54 Aligned_cols=14 Identities=7% Similarity=0.283 Sum_probs=11.9
Q ss_pred HHHHHHHHHHhhcc
Q psy12882 90 FSMRRAVRETWAKE 103 (325)
Q Consensus 90 ~~rR~aIReTWg~~ 103 (325)
-+++++||+||...
T Consensus 5 ~~ek~~I~~sW~~v 18 (141)
T d1cg5b_ 5 EDQEHYIKGVWKDV 18 (141)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhC
Confidence 46899999999975
No 9
>d1v4wb_ a.1.1.2 (B:) Hemoglobin, beta-chain {Bluefin tuna (Thunnus thynnus) [TaxId: 8237]}
Probab=12.62 E-value=38 Score=25.26 Aligned_cols=13 Identities=15% Similarity=0.181 Sum_probs=11.3
Q ss_pred HHHHHHHHHhhcc
Q psy12882 91 SMRRAVRETWAKE 103 (325)
Q Consensus 91 ~rR~aIReTWg~~ 103 (325)
++|++||+||...
T Consensus 6 ~ek~~I~~sW~~v 18 (146)
T d1v4wb_ 6 QERSIIAGIFANL 18 (146)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhcc
Confidence 6899999999864
No 10
>d2aa1b1 a.1.1.2 (B:1-146) Hemoglobin, beta-chain {Antarctic fish (Trematomus newnesi) [TaxId: 35730]}
Probab=12.53 E-value=37 Score=25.29 Aligned_cols=14 Identities=14% Similarity=0.202 Sum_probs=11.8
Q ss_pred HHHHHHHHHHhhcc
Q psy12882 90 FSMRRAVRETWAKE 103 (325)
Q Consensus 90 ~~rR~aIReTWg~~ 103 (325)
-++|++||+||...
T Consensus 5 ~~ek~~i~~sW~~v 18 (146)
T d2aa1b1 5 DFERATIKDIFSKL 18 (146)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhc
Confidence 36899999999975
Done!