RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12882
(325 letters)
>gnl|CDD|216686 pfam01762, Galactosyl_T, Galactosyltransferase. This family
includes the galactosyltransferases
UDP-galactose:2-acetamido-2-deoxy-D-glucose3beta-
galactosyltransferase and UDP-Gal:beta-GlcNAc beta
1,3-galactosyltranferase. Specific
galactosyltransferases transfer galactose to GlcNAc
terminal chains in the synthesis of the lacto-series
oligosaccharides types 1 and 2.
Length = 196
Score = 132 bits (333), Expect = 2e-37
Identities = 53/144 (36%), Positives = 74/144 (51%)
Query: 180 ELVDEEQANYQDLVQEDFVDSYNNLTIASIMMLKFITHRCTHAQYIAKTDDDIYFNVHKL 239
+LV EE Y D+V DF D+Y NLT ++ L + + A+YI K DDD+YF KL
Sbjct: 39 DLVMEEAKLYGDIVVVDFEDTYENLTFKTLTGLLYAVSKAPSAKYIGKIDDDVYFFPDKL 98
Query: 240 YSILTSPKFKREKVVLAGFLIRKGRVIRTPTEKWYTPEYMFSGDVYPDYLSGIAYIMSFK 299
S+L + G+++++G VIR KWY P + YP Y SG Y++S
Sbjct: 99 LSLLDRGNINPSESSFYGYVMKEGPVIRNKKSKWYVPPSDYPCSRYPPYASGPFYLLSRD 158
Query: 300 VARALYNVSLQLPLLHHEDVFITG 323
A L S L EDV++TG
Sbjct: 159 AAELLLKASKHRRFLQIEDVYVTG 182
>gnl|CDD|215596 PLN03133, PLN03133, beta-1,3-galactosyltransferase; Provisional.
Length = 636
Score = 62.5 bits (152), Expect = 9e-11
Identities = 41/136 (30%), Positives = 71/136 (52%), Gaps = 12/136 (8%)
Query: 175 KILDEELVDEEQANYQDLVQEDFVDSYNNLTIASIMMLKFITHRCTHAQYIAKTDDDIYF 234
++++EEL +E + Y D+ FVD Y+ +T ++ + F T A+Y+ KTDDD +
Sbjct: 431 QMVNEELWNEART-YGDIQLMPFVDYYSLITWKTLAICIFGT-EVVSAKYVMKTDDDAFV 488
Query: 235 NVHKLYSILTSPKFKREKV---VLAGFLIRKGRVIRTPTEKWY-TPEYMFSGDVYPDYLS 290
V ++ + L KR V +L G + + R P KWY +PE + + YP +
Sbjct: 489 RVDEVLASL-----KRTNVSHGLLYGLINSDSQPHRNPDSKWYISPE-EWPEETYPPWAH 542
Query: 291 GIAYIMSFKVARALYN 306
G Y++S +A+ +Y
Sbjct: 543 GPGYVVSRDIAKEVYK 558
Score = 39.4 bits (92), Expect = 0.002
Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 71 VCPPTPLTLLIVVSSAVGNFSMRRAVRETWAKELPSQT---AVIFFIGRTENQ 120
+ P PL L I V S NF R AVR TW + ++ AV FF+G +NQ
Sbjct: 379 LSPKKPLDLFIGVFSTANNFKRRMAVRRTWMQYDAVRSGAVAVRFFVGLHKNQ 431
>gnl|CDD|178735 PLN03193, PLN03193, beta-1,3-galactosyltransferase; Provisional.
Length = 408
Score = 36.9 bits (85), Expect = 0.011
Identities = 41/154 (26%), Positives = 74/154 (48%), Gaps = 16/154 (10%)
Query: 173 SGKILDEELVDEEQANYQDLVQEDFVDSYNNLTIASIMMLKFITHRCT-HAQYIAKTDDD 231
SG ILD ++ E + D ++ D V+ Y L +++ F T A + K DDD
Sbjct: 190 SGGILDRA-IEAEDRKHGDFLRLDHVEGY--LELSAKTKTYFATAVAMWDADFYVKVDDD 246
Query: 232 IYFNVHKLYSILTSPKFKREKVVLAGFLIRKGRVIRTPTEKWYTPEY-MF--SGDVYPDY 288
++ N+ L L + K+ +V + ++ G V+ +++ PEY F +G+ Y +
Sbjct: 247 VHVNIATLGETLVRHR-KKPRVYIG--CMKSGPVLSQKGVRYHEPEYWKFGENGNKYFRH 303
Query: 289 LSGIAYIMSFKVARALYNVSLQLPLLH---HEDV 319
+G Y +S +A +S+ +LH +EDV
Sbjct: 304 ATGQLYAISKDLASY---ISINQHVLHKYANEDV 334
>gnl|CDD|183710 PRK12737, gatY, tagatose-bisphosphate aldolase; Reviewed.
Length = 284
Score = 30.4 bits (69), Expect = 1.1
Identities = 31/95 (32%), Positives = 40/95 (42%), Gaps = 39/95 (41%)
Query: 234 FNVHKLYSI---------LTSPKFKREKVVLAGFLIRKGRVIRTPTEKWYTPEYMFSGDV 284
FN+H L ++ L SP V+LAG TP T Y +G
Sbjct: 23 FNIHNLETLQVVVETAAELRSP------VILAG----------TPG----TFSY--AG-- 58
Query: 285 YPDYLSGIAYIMSFKVARALYNVSLQLPLLHHEDV 319
DY+ IA +VA YN+ L L L HHED+
Sbjct: 59 -TDYIVAIA-----EVAARKYNIPLALHLDHHEDL 87
>gnl|CDD|169215 PRK08091, PRK08091, ribulose-phosphate 3-epimerase; Validated.
Length = 228
Score = 29.8 bits (67), Expect = 1.7
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 52 NTSLYVRPQTETVLMCGALVCPPTPLTLL 80
T ++ Q TVL G +CP TP++LL
Sbjct: 107 LTIEWLAKQKTTVL-IGLCLCPETPISLL 134
>gnl|CDD|100088 cd03086, PGM3, PGM3 (phosphoglucomutase 3), also known as PAGM
(phosphoacetylglucosamine mutase) and AGM1
(N-acetylglucosamine-phosphate mutase), is an essential
enzyme found in eukaryotes that reversibly catalyzes the
conversion of GlcNAc-6-phosphate into GlcNAc-1-phosphate
as part of the UDP-N-acetylglucosamine (UDP-GlcNAc)
biosynthetic pathway. UDP-GlcNAc is an essential
metabolite that serves as the biosynthetic precursor of
many glycoproteins and mucopolysaccharides. AGM1 is a
member of the alpha-D-phosphohexomutase superfamily,
which catalyzes the intramolecular phosphoryl transfer
of sugar substrates. The alpha-D-phosphohexomutases have
four domains with a centrally located active site formed
by four loops, one from each domain. All four domains
are included in this alignment model.
Length = 513
Score = 29.1 bits (66), Expect = 4.0
Identities = 8/60 (13%), Positives = 23/60 (38%), Gaps = 5/60 (8%)
Query: 201 YNNLTIASIMMLKFITHRCTHAQYIAKTDDDIYFNVH-----KLYSILTSPKFKREKVVL 255
+ + + L ++ + ++ Y+ +LY++L + EK+V+
Sbjct: 133 VIDYGLVTTPQLHYLVRAANTEGAYGEPTEEGYYEKLSKAFNELYNLLQDGGDEPEKLVV 192
>gnl|CDD|239208 cd02826, Piwi-like, Piwi-like: PIWI domain. Domain found in
proteins involved in RNA silencing. RNA silencing refers
to a group of related gene-silencing mechanisms mediated
by short RNA molecules, including siRNAs, miRNAs, and
heterochromatin-related guide RNAs. The central
component of the RNA-induced silencing complex (RISC)
and related complexes is Argonaute. The PIWI domain is
the C-terminal portion of Argonaute and consists of two
subdomains, one of which provides the 5' anchoring of
the guide RNA and the other, the catalytic site for
slicing. This domain is also found in closely related
proteins, including the Piwi subfamily, where it is
believed to perform a crucial role in germline cells,
via a similar mechanism.
Length = 393
Score = 28.5 bits (64), Expect = 4.6
Identities = 18/90 (20%), Positives = 33/90 (36%), Gaps = 11/90 (12%)
Query: 94 RAVRETWAKELPSQTAVIFFIGRTENQTL----VVSDQIKWYNRLEPPY-IAFVVILARV 148
+++ + LP + VI+ G +E + V + IK +E Y V+I+ +
Sbjct: 232 DGFKKSTGEGLP-EKIVIYRDGVSEGEFKRVKEEVEEIIKEACEIEESYRPKLVIIVVQK 290
Query: 149 STWFRIFLLTIQRGNCSSIMSTLPSGKILD 178
R F G G ++D
Sbjct: 291 RHNTRFFPNEKNGGVQ-----NPEPGTVVD 315
>gnl|CDD|218907 pfam06135, DUF965, Bacterial protein of unknown function (DUF965).
This family consists of several hypothetical bacterial
proteins. The function of the family is unknown.
Length = 79
Score = 26.4 bits (59), Expect = 6.8
Identities = 18/63 (28%), Positives = 22/63 (34%), Gaps = 15/63 (23%)
Query: 247 KFKREKVVLAGFLIRKGRVIRTPTEKWYTP-----EYMFSGDVYPDYLSGIAYIMSFKVA 301
F E ++ V + EK Y P Y+ SGD P AYI A
Sbjct: 8 DFDDEDEKDVREILTT--VYQALEEKGYNPINQIVGYLLSGD--P------AYITRHNDA 57
Query: 302 RAL 304
R L
Sbjct: 58 RNL 60
>gnl|CDD|181690 PRK09195, gatY, tagatose-bisphosphate aldolase; Reviewed.
Length = 284
Score = 27.8 bits (62), Expect = 8.8
Identities = 25/94 (26%), Positives = 33/94 (35%), Gaps = 39/94 (41%)
Query: 234 FNVHKLYSI---------LTSPKFKREKVVLAGFLIRKGRVIRTPTEKWYTPEYMFSGDV 284
FN+H L ++ L SP V++AG TP T Y +
Sbjct: 23 FNIHNLETMQVVVETAAELHSP------VIIAG----------TPG----TFSYAGT--- 59
Query: 285 YPDYLSGIAYIMSFKVARALYNVSLQLPLLHHED 318
+YL I A Y+ L L L HHE
Sbjct: 60 --EYLLAIV-----SAAAKQYHHPLALHLDHHEK 86
>gnl|CDD|204173 pfam09231, RDV-p3, Rice dwarf virus p3. Members of this family are
core structural proteins found in the double-stranded
RNA virus Phytoreovirus. They are large proteins without
apparent domain division, with a number of all-alpha
regions and one all beta domain near the C-terminal end.
Length = 967
Score = 28.0 bits (62), Expect = 9.6
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 276 PEYMFSGDVYPDYLSGIAYIMSFKVARALYNV 307
P+Y GD PD+ +G I+ ++ RA+++
Sbjct: 602 PQYQILGDAIPDFFAGGEDILILQLIRAIWDT 633
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.138 0.418
Gapped
Lambda K H
0.267 0.0766 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,940,813
Number of extensions: 1643742
Number of successful extensions: 1882
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1880
Number of HSP's successfully gapped: 17
Length of query: 325
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 228
Effective length of database: 6,635,264
Effective search space: 1512840192
Effective search space used: 1512840192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (26.4 bits)