RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12882
(325 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 46.2 bits (109), Expect = 1e-05
Identities = 54/353 (15%), Positives = 102/353 (28%), Gaps = 107/353 (30%)
Query: 6 TYSKFLLGTLISITFIYLLYL-PIAQHQPGMYPRSLHVKGWELSKSRNTSLYVRPQTETV 64
TY L+G LI + L L ++ + L++ W L NT P +
Sbjct: 179 TY-HVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEW-LENPSNT-----PDKD-- 229
Query: 65 LMCGALV-CPPTPLTLLIVVSSAVGNFSMRRAVRETWAKELPSQTAVIFFIGRTENQTLV 123
+ + CP LI V + + T P + +Q LV
Sbjct: 230 YLLSIPISCP------LIGVIQLAHYVVTAKLLGFT-----PGELRSYLKGATGHSQGLV 278
Query: 124 VSDQIKWYNRLEPPYIAFVVILARVSTW---FRIFLLTIQ-------RGNCSSIMSTLPS 173
+ V +A +W F I R + ++LP
Sbjct: 279 TA-----------------VAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPP 321
Query: 174 GKILDEELVDEEQANYQDLVQEDFVDSYNNLTIASIMMLKFITHRCTHAQYIAKTDDDIY 233
+ D +E + + NLT + ++ +H +
Sbjct: 322 SILEDSLENNEGVPSPMLSIS--------NLTQEQV--QDYVNKTNSHLP----AGKQVE 367
Query: 234 ---FNVHKLYSILTSPKFKREKVVLAGF------LIRKGRVIRTPT--EKWYTPEYMFS- 281
N K +V++G L R + P+ ++ P FS
Sbjct: 368 ISLVN---------GAK----NLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIP---FSE 411
Query: 282 -----GDVY-----P---DYLSGIAYIMSFKVARA--LYNVS-LQLPLLHHED 318
+ + P L + +++ + + +N +Q+P+ D
Sbjct: 412 RKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFD 464
Score = 28.1 bits (62), Expect = 5.9
Identities = 20/110 (18%), Positives = 31/110 (28%), Gaps = 46/110 (41%)
Query: 199 DSYNNLTIASIMMLKFITHRCTHAQYIAKTDDDIYFNVHKLYSIL----TSPKFKREKVV 254
D Y A + + +R D +F +SIL +P +
Sbjct: 1634 DLYKTSKAA-----QDVWNRA-----------DNHFKDTYGFSILDIVINNPV---NLTI 1674
Query: 255 LAGFLIRKGRVIR---------------TPTEKWY------TPEYMFSGD 283
F KG+ IR TEK + + Y F +
Sbjct: 1675 H--FGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSE 1722
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 43.3 bits (101), Expect = 8e-05
Identities = 40/311 (12%), Positives = 97/311 (31%), Gaps = 70/311 (22%)
Query: 35 MYPRSL----HVKGWELSKSRNTSLYVRPQTETVLMCGALVCPPTPLTLLIVVSSAVGNF 90
Y L +V+ + + N L C L+ T V+ +
Sbjct: 242 PYENCLLVLLNVQNAKAWNAFN------------LSCKILL-----TTRFKQVTDFLSAA 284
Query: 91 SMRRAVRETWAKEL-PSQTAVIF--FIGRTENQTLVVSDQIKWYNRLEPPYIAFVVILAR 147
+ + + L P + + ++ Q L ++ N P ++ + R
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSLLLKYLD-CRPQDL--PREVLTTN---PRRLSIIAESIR 338
Query: 148 --VSTWFRIFLLTIQRGNCSSIMSTLPSGKILDEELVDEEQANYQDLV--QEDFVDSYNN 203
++TW + ++I+ + S +L+ E + + L +
Sbjct: 339 DGLATW--DNWKHVNCDKLTTIIES--SLNVLEP---AEYRKMFDRLSVFPPS-A----H 386
Query: 204 LTIASIMML---------KFITHRCTHAQYIAKTDDDIYFNVHKLYSILTSPKFKREKVV 254
+ + ++ + ++ + K + ++ +Y + K + E
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY-LELKVKLENEYA- 444
Query: 255 LAGFLIRKGRVIRTPTEKWYTPEYMFSGDVYPDYLSGIAYIMSFKVARALYNVSLQLPLL 314
+ + ++ + + P+ S D+ P YL Y S + L N+ +
Sbjct: 445 -----LHR-SIV----DHYNIPKTFDSDDLIPPYLDQ--YFYSH-IGHHLKNIEHPERMT 491
Query: 315 HHEDVFITGNF 325
VF+ F
Sbjct: 492 LFRMVFLDFRF 502
Score = 36.0 bits (82), Expect = 0.015
Identities = 30/169 (17%), Positives = 60/169 (35%), Gaps = 40/169 (23%)
Query: 177 LDEELVDEEQANYQDLV---QEDFVDSYNNLTIASIMMLKFITHRCTHAQYIAKTDDDIY 233
+D E E Q Y+D++ ++ FVD+++ + + H I + D
Sbjct: 7 MDFE-TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDH---IIMSKDA-- 60
Query: 234 FNVHKLYSILTSPKFKREKVVLA----------GFL---IRKGRVIRTPTEKWYTPEY-- 278
V + + K+E++V FL I+ + + + Y +
Sbjct: 61 --VSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR 118
Query: 279 MF-SGDVYPDYLSGIAYIMSFKVARALYNVSLQLPLL---HHEDVFITG 323
++ V+ Y V+R + L+ LL ++V I G
Sbjct: 119 LYNDNQVFAKY----------NVSRLQPYLKLRQALLELRPAKNVLIDG 157
Score = 34.1 bits (77), Expect = 0.079
Identities = 58/359 (16%), Positives = 105/359 (29%), Gaps = 118/359 (32%)
Query: 1 MTLVPTYSKFLLGTLISITF---------IYLLYLP-IA---QHQPGMYPRSLHVKGWEL 47
MTL P K LL + L IA + + HV +L
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL 355
Query: 48 SKSRNTSLYVRPQTETVLMCGALVCPPTPLTLLIVVSSAVGNFSMRRAVRETWAKELPSQ 107
+ +SL V E R+ L
Sbjct: 356 TTIIESSLNVLEPAE-----------------------------YRKMF-----DRL--- 378
Query: 108 TAVIFFIGRTEN-----QTLVVSDQIKWYNRLEPPYIAFVVILARVSTWFRIFLLTIQRG 162
+F + L + W++ ++ + V L + S L+ ++
Sbjct: 379 --SVF----PPSAHIPTILL----SLIWFDVIKSDVMVVVNKLHKYS------LV--EKQ 420
Query: 163 NCSSIMSTLPSGKILDEELVDEEQANYQDLVQEDFVDSYNNLTIASIMMLKFITHRCTHA 222
S +S +PS + + ++ E A ++ + VD YN + +
Sbjct: 421 PKESTIS-IPSIYLELKVKLENEYALHRSI-----VDHYN-------------IPKTFDS 461
Query: 223 QYIAKTDDDIYFN---VHKLYSILTSPKFKR-EKVVLA-GFLIRKGRVIRTPTEKWYTPE 277
+ D YF H L +I + V L FL +K IR + W
Sbjct: 462 DDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK---IRHDSTAWNASG 518
Query: 278 YMFS--GDV--YPDYLSG--------IAYIMSF--KVARALYNVS----LQLPLLHHED 318
+ + + Y Y+ + I+ F K+ L L++ L+ ++
Sbjct: 519 SILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDE 577
>2j0a_A Beta-1,3-N-acetylglucosaminyltransferase manic FR;
glycosyltransferase, developmental protein,
transmembrane, G apparatus, notch signaling; 1.8A {Mus
musculus} PDB: 2j0b_A*
Length = 280
Score = 39.4 bits (91), Expect = 0.001
Identities = 23/152 (15%), Positives = 51/152 (33%), Gaps = 17/152 (11%)
Query: 178 DEELVDEEQANYQDLVQEDFVDSYNNLTIASIMMLKFITHRCTHAQYIAKTDDDIYFNVH 237
+E + E + + Q S+ L+ M +F + ++ DDD Y N
Sbjct: 52 PDERLQERLGPHLVVTQCSAEHSHPALSCK--MAAEFDAFLVSGLRWFCHVDDDNYVNPK 109
Query: 238 KLYSILTSPKFKREKVVLAGFLIRKGRVIRTPTEKWYTPEYMFSGDVYPDYLSGIA-YIM 296
L +L F +++ V G + P + V + +G A + +
Sbjct: 110 ALLQLLK--TFPQDRDVYVG-----KPSLNRPIHASELQSKQRTKLVRFWFATGGAGFCI 162
Query: 297 SFKVARALYNVSLQLPLL-------HHEDVFI 321
+ ++A + + + +D +
Sbjct: 163 NRQLALKMVPWASGSHFVDTSALIRLPDDCTV 194
>1uf2_A Core protein P3; virus components, icosahedral virus; 3.50A {Rice
dwarf virus} SCOP: e.28.1.2
Length = 1019
Score = 28.2 bits (62), Expect = 4.9
Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 6/51 (11%)
Query: 276 PEYMFSGDVYPDYLSGIAYIMSFKVARALYNVSLQ------LPLLHHEDVF 320
P+Y + PD+ +G I+ ++ RA+Y+ + H E+VF
Sbjct: 650 PQYQILNEAVPDFFAGGEDILILQLIRAVYDTLSNKLGRNPADIFHLEEVF 700
>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling
protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB:
3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A
Length = 120
Score = 26.1 bits (57), Expect = 8.3
Identities = 7/29 (24%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 254 VLAGFLIRKGRVIRTPTEKWY--TPEYMF 280
+ +GFL R+ + +++ ++ +Y TP ++
Sbjct: 7 IKSGFLERRSKFLKSYSKGYYVLTPNFLH 35
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.138 0.418
Gapped
Lambda K H
0.267 0.0554 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,060,622
Number of extensions: 301303
Number of successful extensions: 686
Number of sequences better than 10.0: 1
Number of HSP's gapped: 679
Number of HSP's successfully gapped: 13
Length of query: 325
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 231
Effective length of database: 4,077,219
Effective search space: 941837589
Effective search space used: 941837589
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (26.1 bits)