RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12882
         (325 letters)



>d1uf2a_ e.28.1.2 (A:) RDV p3 {Rice dwarf virus [TaxId: 10991]}
          Length = 967

 Score = 28.0 bits (62), Expect = 1.8
 Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 6/51 (11%)

Query: 276 PEYMFSGDVYPDYLSGIAYIMSFKVARALYNVSLQ------LPLLHHEDVF 320
           P+Y    +  PD+ +G   I+  ++ RA+Y+            + H E+VF
Sbjct: 601 PQYQILNEAVPDFFAGGEDILILQLIRAVYDTLSNKLGRNPADIFHLEEVF 651


>d1w1we_ a.4.5.57 (E:) Sister chromatid cohesion protein 1 (SCC1),
           C-terminal domain {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 79

 Score = 24.8 bits (54), Expect = 4.3
 Identities = 9/37 (24%), Positives = 20/37 (54%)

Query: 169 STLPSGKILDEELVDEEQANYQDLVQEDFVDSYNNLT 205
           + +   KIL +EL +E++  + D+++        N+T
Sbjct: 2   AIVQMAKILRKELSEEKEVIFTDVLKSQANTEPENIT 38


>d1jv1a_ c.68.1.5 (A:) UDP-N-acetylglucosamine pyrophosphorylase
           {Human (Homo sapiens), AGX1 [TaxId: 9606]}
          Length = 501

 Score = 26.9 bits (59), Expect = 4.4
 Identities = 25/145 (17%), Positives = 40/145 (27%), Gaps = 12/145 (8%)

Query: 161 RGNCSSIMSTLPSGKILDEELVDEEQANYQDLVQEDFVDSYNNLTIASIMMLKFITHRCT 220
           R   +        G    + L   +      L Q       N   I   +M    T   T
Sbjct: 115 RLGVAYPKGMYDVGLPSRKTLFQIQAERILKLQQVAEKYYGNKCIIPWYIMTSGRTMEST 174

Query: 221 HAQYIAKTDDDIYFNVHKLYSIL----TSPKFKREKVVLAGFLIRKGRVIRTPTEKWYTP 276
              +  K     YF + K   I       P    +  ++   L  K +V   P       
Sbjct: 175 KE-FFTKHK---YFGLKKENVIFFQQGMLPAMSFDGKII---LEEKNKVSMAPDGNGGLY 227

Query: 277 EYMFSGDVYPDYLS-GIAYIMSFKV 300
             + + ++  D    GI  I  + V
Sbjct: 228 RALAAQNIVEDMEQRGIWSIHVYCV 252


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.138    0.418 

Gapped
Lambda     K      H
   0.267   0.0551    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,225,768
Number of extensions: 56654
Number of successful extensions: 152
Number of sequences better than 10.0: 1
Number of HSP's gapped: 152
Number of HSP's successfully gapped: 6
Length of query: 325
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 239
Effective length of database: 1,226,816
Effective search space: 293209024
Effective search space used: 293209024
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.6 bits)