RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12886
(326 letters)
>gnl|CDD|215741 pfam00135, COesterase, Carboxylesterase family.
Length = 510
Score = 216 bits (551), Expect = 3e-66
Identities = 97/263 (36%), Positives = 140/263 (53%), Gaps = 42/263 (15%)
Query: 69 VFIHG--------ASNLFPGHMMAGFYEVVVVTINYRLGALGFLSTGDHNSPGNYGILDQ 120
V+IHG + + + G +A +VVVVTINYRLGALGFLSTGD PGN G+LDQ
Sbjct: 104 VWIHGGGFQSGSASLDDYDGPDLAASEDVVVVTINYRLGALGFLSTGDSELPGNAGLLDQ 163
Query: 121 AMALQWIHGNIEHFNGDPNSITLFGPGAGAASAGLLMVNPRTRNLVRRVIAQLWSIAYFQ 180
+AL+W+ NI F GDP+++TLFG AGAAS LL+++P +R L R I
Sbjct: 164 VLALRWVKDNIAAFGGDPDNVTLFGESAGAASVSLLLLSPASRGLFHRAIL--------M 215
Query: 181 SGSATADWALIQDRWRVQNTSRLFAQHLGCSFESSWK-IVDCLKRGRSSLELGNANFR-- 237
SGSA + WA+ + ++ A+ LGC E S +++CL R +S+ EL +A
Sbjct: 216 SGSALSPWAI---TSNPRQRAKRLAKLLGCPGEDSSAELLECL-RKKSAEELLDAQLLLL 271
Query: 238 PQVGMFAWGPVLDLNFTVPADHWHDGWYQKDWYFTNYTTEEYIRMGSFSRDLAYMTGVTT 297
+VG F +GPV+D +F +P D EE ++ G F+ + + GVT+
Sbjct: 272 EEVGFFPFGPVVDGDF-LPKDP-----------------EELLKSGWFN-KVPLLIGVTS 312
Query: 298 QEAAYIVEVTSMENCYKKELSSI 320
E + + EL +
Sbjct: 313 DEGLLFLAYVLPDPTELSELLNE 335
>gnl|CDD|238191 cd00312, Esterase_lipase, Esterases and lipases (includes fungal
lipases, cholinesterases, etc.) These enzymes act on
carboxylic esters (EC: 3.1.1.-). The catalytic apparatus
involves three residues (catalytic triad): a serine, a
glutamate or aspartate and a histidine.These catalytic
residues are responsible for the nucleophilic attack on
the carbonyl carbon atom of the ester bond. In contrast
with other alpha/beta hydrolase fold family members,
p-nitrobenzyl esterase and acetylcholine esterase have a
Glu instead of Asp at the active site carboxylate.
Length = 493
Score = 189 bits (482), Expect = 3e-56
Identities = 97/248 (39%), Positives = 138/248 (55%), Gaps = 42/248 (16%)
Query: 67 VPVFIHG------ASNLFPGHMMAGFYE-VVVVTINYRLGALGFLSTGDHNSPGNYGILD 119
V V+IHG + +L+PG +A + V+VV+INYRLG LGFLSTGD PGNYG+ D
Sbjct: 97 VMVWIHGGGFMFGSGSLYPGDGLAREGDNVIVVSINYRLGVLGFLSTGDIELPGNYGLKD 156
Query: 120 QAMALQWIHGNIEHFNGDPNSITLFGPGAGAASAGLLMVNPRTRNLVRRVIAQLWSIAYF 179
Q +AL+W+ NI F GDP+S+T+FG AG AS LL+++P ++ L R I+
Sbjct: 157 QRLALKWVQDNIAAFGGDPDSVTIFGESAGGASVSLLLLSPDSKGLFHRAIS-------- 208
Query: 180 QSGSATADWALIQDRWRVQNTSRLFAQHLGCSFESSWKIVDCLKRGRSSLELGNAN---- 235
QSGSA + WA IQ+ R + + A+ LGC+ SS +++DCL R +S+ EL +A
Sbjct: 209 QSGSALSPWA-IQENARGRA--KRLARLLGCNDTSSAELLDCL-RSKSAEELLDATRKLL 264
Query: 236 FRPQVGMFAWGPVLDLNFTVPADHWHDGWYQKDWYFTNYTTEEYIRMGSFSRDLAYMTGV 295
+GPV+D +F +P D EE I+ G F+ + + GV
Sbjct: 265 LFSYSPFLPFGPVVDGDF-IPDD-----------------PEELIKEGKFA-KVPLIIGV 305
Query: 296 TTQEAAYI 303
T E Y
Sbjct: 306 TKDEGGYF 313
>gnl|CDD|225181 COG2272, PnbA, Carboxylesterase type B [Lipid metabolism].
Length = 491
Score = 125 bits (316), Expect = 2e-32
Identities = 70/208 (33%), Positives = 101/208 (48%), Gaps = 34/208 (16%)
Query: 64 EKNVPV--FIHG--------ASNLFPGHMMAGFYEVVVVTINYRLGALGFLSTGDHNSP- 112
+ +PV +IHG + L+ G +A +VVVV++NYRLGALGFL ++
Sbjct: 91 AEKLPVMVYIHGGGYIMGSGSEPLYDGSALAARGDVVVVSVNYRLGALGFLDLSSLDTED 150
Query: 113 ---GNYGILDQAMALQWIHGNIEHFNGDPNSITLFGPGAGAASAGLLMVNPRTRNLVRRV 169
N G+LDQ +AL+W+ NIE F GDP ++TLFG AGAAS L+ P + L R
Sbjct: 151 AFASNLGLLDQILALKWVRDNIEAFGGDPQNVTLFGESAGAASILTLLAVPSAKGLFHRA 210
Query: 170 IAQLWSIAYFQSGSATADWALIQDRWRVQNTSRLFAQHLGCSFESSWKIVDCLKRGRSSL 229
IA SG+A+ + R + + FA+ LG + +D L R S+
Sbjct: 211 IA--------LSGAASR----VTSREEAREKAAAFARALGIPEAT----LDKL-RALSAE 253
Query: 230 EL--GNANFR-PQVGMFAWGPVLDLNFT 254
+L G +GPVL +
Sbjct: 254 DLVKARLPLIGRTFGAVPYGPVLGDSLL 281
>gnl|CDD|223730 COG0657, Aes, Esterase/lipase [Lipid metabolism].
Length = 312
Score = 44.5 bits (105), Expect = 3e-05
Identities = 26/107 (24%), Positives = 42/107 (39%), Gaps = 17/107 (15%)
Query: 69 VFIHG--------ASNLFPGHMMAGFYEVVVVTINYRLGALGFLSTGDHNSPGNYGILDQ 120
+++HG ++ +A VVV+++YRL +H P + D
Sbjct: 83 LYLHGGGWVLGSLRTHDALVARLAAAAGAVVVSVDYRLA-------PEHPFPAA--LEDA 133
Query: 121 AMALQWIHGNIEHFNGDPNSITLFGPGAGAASAGLLMVNPRTRNLVR 167
A +W+ N DP+ I + G AG A L + R R L
Sbjct: 134 YAAYRWLRANAAELGIDPSRIAVAGDSAGGHLALALALAARDRGLPL 180
>gnl|CDD|132195 TIGR03151, enACPred_II, putative enoyl-[acyl-carrier-protein]
reductase II. This oxidoreductase of the 2-nitropropane
dioxygenase family (pfam03060) is commonly found in
apparent operons with genes involved in fatty acid
biosynthesis. Furthermore, this genomic context
generally includes the fabG 3-oxoacyl-[ACP] reductase
and lacks the fabI enoyl-[ACP] reductase.
Length = 307
Score = 37.4 bits (87), Expect = 0.008
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 7/50 (14%)
Query: 45 MLSDFLYRAPVDNIVKLLVEKNVPVFIHGASNLFPGHMMAGFYEVVVVTI 94
+LS F VD +V L++E+ VPV GA N PG + E V I
Sbjct: 71 LLSPF-----VDELVDLVIEEKVPVVTTGAGN--PGKYIPRLKENGVKVI 113
>gnl|CDD|219611 pfam07859, Abhydrolase_3, alpha/beta hydrolase fold. This
catalytic domain is found in a very wide range of
enzymes.
Length = 207
Score = 34.5 bits (80), Expect = 0.039
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 11/63 (17%)
Query: 89 VVVVTINYRLGALGFLSTGDHNSPGNYGILDQAM-ALQWIHGNIEHFNGDPNSITLFGPG 147
VVV+++YRL +H P ++ A AL+W+ + DP+ I + G
Sbjct: 30 AVVVSVDYRLA-------PEHPFPA---AIEDAYAALRWLAEHAWELGADPSRIAVAGDS 79
Query: 148 AGA 150
AG
Sbjct: 80 AGG 82
>gnl|CDD|117609 pfam09043, Lys-AminoMut_A, D-Lysine 5,6-aminomutase alpha subunit.
Members of his family are involved in the 1,2
rearrangement of the terminal amino group of DL-lysine
and of L-beta-lysine, using adenosylcobalamin (AdoCbl)
and pyridoxal-5'-phosphate as cofactors. The structure
is predominantly a PLP-binding TIM barrel domain, with
several additional alpha-helices and beta-strands at the
N and C termini. These helices and strands form an
intertwined accessory clamp structure that wraps around
the sides of the TIM barrel and extends up toward the
Ado ligand of the Cbl cofactor, providing most of the
interactions observed between the protein and the Ado
ligand of the Cbl, suggesting that its role is mainly in
stabilising AdoCbl in the precatalytic resting state.
Length = 509
Score = 32.8 bits (75), Expect = 0.25
Identities = 28/141 (19%), Positives = 58/141 (41%), Gaps = 28/141 (19%)
Query: 40 ISTAQMLSDFLYRAPVDNIVKLLVEKNVPVFIHGASNLFPGHMMAGFYEVVVVTINYRLG 99
++ AQM+ + +AP+ K +P N+F GH+ + +V + +
Sbjct: 350 LAQAQMVREIFPKAPL---------KYMPPTKFMTGNIFKGHVQDALFNMVTIMTGQGIH 400
Query: 100 ALGFLSTGDHNSPGNYGILDQAMALQ---WIHGNIEHFNGDPNSITLFGPGAGAASAGLL 156
LG L+ H + D+A+A++ +I N++ + I F G
Sbjct: 401 LLGMLTEAIHTP----FMSDRALAIENAKYIFNNMKDIGEE---IE-FKEGG-------- 444
Query: 157 MVNPRTRNLVRRVIAQLWSIA 177
++ R + ++ + +A L I
Sbjct: 445 IIQSRAQEVLEKALALLEEIE 465
>gnl|CDD|235272 PRK04296, PRK04296, thymidine kinase; Provisional.
Length = 190
Score = 30.5 bits (70), Expect = 0.87
Identities = 10/43 (23%), Positives = 20/43 (46%), Gaps = 7/43 (16%)
Query: 49 FLYRAPVDNIVKLLVEKNVPVFIHG-----ASNLFPG--HMMA 84
FL + V + ++L + +PV +G F G +++A
Sbjct: 89 FLDKEQVVQLAEVLDDLGIPVICYGLDTDFRGEPFEGSPYLLA 131
>gnl|CDD|238619 cd01294, DHOase, Dihydroorotase (DHOase) catalyzes the reversible
interconversion of carbamoyl aspartate to
dihydroorotate, a key reaction in the pyrimidine
biosynthesis. In contrast to the large polyfunctional
CAD proteins of higher organisms, this group of DHOases
is monofunctional and mainly dimeric.
Length = 335
Score = 30.7 bits (70), Expect = 1.1
Identities = 14/49 (28%), Positives = 17/49 (34%), Gaps = 7/49 (14%)
Query: 270 YFTNYTTEEYIRMGSFSRDL----AYMTGVTTQEAAYIVEVTSMENCYK 314
Y T TT E +R + Y G TT VT +E Y
Sbjct: 72 YLTENTTPEELREAKKKGGIRGVKLYPAGATTNSQG---GVTDLEKIYP 117
>gnl|CDD|239111 cd02620, Peptidase_C1A_CathepsinB, Cathepsin B group; composed of
cathepsin B and similar proteins, including
tubulointerstitial nephritis antigen (TIN-Ag).
Cathepsin B is a lysosomal papain-like cysteine
peptidase which is expressed in all tissues and
functions primarily as an exopeptidase through its
carboxydipeptidyl activity. Together with other
cathepsins, it is involved in the degradation of
proteins, proenzyme activation, Ag processing,
metabolism and apoptosis. Cathepsin B has been
implicated in a number of human diseases such as
cancer, rheumatoid arthritis, osteoporosis and
Alzheimer's disease. The unique carboxydipeptidyl
activity of cathepsin B is attributed to the presence
of an occluding loop in its active site which favors
the binding of the C-termini of substrate proteins.
Some members of this group do not possess the occluding
loop. TIN-Ag is an extracellular matrix basement
protein which was originally identified as a target Ag
involved in anti-tubular basement membrane
antibody-mediated interstitial nephritis. It plays a
role in renal tubulogenesis and is defective in
hereditary tubulointerstitial disorders. TIN-Ag is
exclusively expressed in kidney tissues. .
Length = 236
Score = 29.9 bits (68), Expect = 1.6
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 7/33 (21%)
Query: 23 REERS-CIH---VRDEHNCGS---ISTAQMLSD 48
RE+ CI +RD+ NCGS S + SD
Sbjct: 7 REKWPNCISIGEIRDQGNCGSCWAFSAVEAFSD 39
>gnl|CDD|221718 pfam12695, Abhydrolase_5, Alpha/beta hydrolase family. This family
contains a diverse range of alpha/beta hydrolase
enzymes.
Length = 145
Score = 28.9 bits (65), Expect = 1.8
Identities = 21/128 (16%), Positives = 33/128 (25%), Gaps = 31/128 (24%)
Query: 69 VFIHGASNLFPGHMMAGFYE------VVVVTINYRLGALGFLSTGDHNSPGNYGILDQAM 122
V +HG A VV ++Y +G A
Sbjct: 3 VLLHG--AGGDPEAYAPLARALASRGYNVVAVDYPG----------------HGASLGAP 44
Query: 123 ALQWIHGNIEHFNGDPNSITLFGPGAGAASAGLLMVNPRTRNLVRRVIAQLWSIAYFQSG 182
+ + + DP I L G G A LL R+ + L + +
Sbjct: 45 DAEAV---LADAPLDPERIVLVGHSLGGGVALLLA----ARDPRVKAAVVLAAGDPPDAL 97
Query: 183 SATADWAL 190
A +
Sbjct: 98 DDLAKLTV 105
>gnl|CDD|216941 pfam02233, PNTB, NAD(P) transhydrogenase beta subunit. This family
corresponds to the beta subunit of NADP transhydrogenase
in prokaryotes, and either the protein N- or C terminal
in eukaryotes. The domain is often found in conjunction
with pfam01262. Pyridine nucleotide transhydrogenase
catalyzes the reduction of NAD+ to NADPH. A complete
loss of activity occurs upon mutation of Gly314 in E.
coli.
Length = 464
Score = 28.1 bits (63), Expect = 6.7
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 54 PVDNIVKLLVEKNVPV-F-IHGASNLFPGHM 82
PV ++ KLL E+ V V F IH + PGHM
Sbjct: 327 PVADLAKLLEERGVNVRFAIHPVAGRMPGHM 357
>gnl|CDD|235044 PRK02504, PRK02504, NAD(P)H-quinone oxidoreductase subunit 2;
Provisional.
Length = 513
Score = 28.1 bits (63), Expect = 6.7
Identities = 22/76 (28%), Positives = 28/76 (36%), Gaps = 22/76 (28%)
Query: 121 AMALQWIHGNIEHF----NGDPNSITLFGPGAGAASAGLLMVNPRTRNLVRRVIAQLWSI 176
A+ALQW + N F N D SI A + LLM S
Sbjct: 57 ALALQWDNPNPISFLGSFNADNLSIAFRAIIALSTLVTLLM-----------------SW 99
Query: 177 AYF-QSGSATADWALI 191
Y QSG+ ++A I
Sbjct: 100 RYVEQSGTPLGEFAAI 115
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.135 0.430
Gapped
Lambda K H
0.267 0.0695 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,641,456
Number of extensions: 1591599
Number of successful extensions: 1239
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1226
Number of HSP's successfully gapped: 19
Length of query: 326
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 229
Effective length of database: 6,635,264
Effective search space: 1519475456
Effective search space used: 1519475456
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.6 bits)