RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12886
(326 letters)
>3bix_A Neuroligin-1, neuroligin I; esterase domain, alpha-beta hydrolase,
cell adhesion, cell J glycoprotein, membrane,
postsynaptic cell membrane; HET: NAG; 1.80A {Rattus
norvegicus} PDB: 3biw_A* 3b3q_A* 3be8_A* 2wqz_A* 2xb6_A*
2vh8_A 3bl8_A*
Length = 574
Score = 239 bits (611), Expect = 1e-74
Identities = 83/245 (33%), Positives = 126/245 (51%), Gaps = 38/245 (15%)
Query: 67 VPVFIHG------ASNLFPGHMMAGFYEVVVVTINYRLGALGFLSTGDHNSPGNYGILDQ 120
V V+IHG NL+ G ++A + V+V+T+NYRLG LGFLSTGD + GNYG+LD
Sbjct: 133 VMVYIHGGSYMEGTGNLYDGSVLASYGNVIVITVNYRLGVLGFLSTGDQAAKGNYGLLDL 192
Query: 121 AMALQWIHGNIEHFNGDPNSITLFGPGAGAASAGLLMVNPRT-RNLVRRVIAQLWSIAYF 179
AL+W NI F GDP IT+FG GAG + LL ++ + + L +R IA
Sbjct: 193 IQALRWTSENIGFFGGDPLRITVFGSGAGGSCVNLLTLSHYSEKGLFQRAIA-------- 244
Query: 180 QSGSATADWALIQDRWRVQNTSRLFAQHLGCSFESSWKIVDCLKRGRSSLELGNANFRPQ 239
QSG+A + WA+ ++ +R+ A +GC+ + ++V+CL + + EL + + +P
Sbjct: 245 QSGTALSSWAV---SFQPAKYARILATKVGCNVSDTVELVECL-QKKPYKELVDQDVQPA 300
Query: 240 VGMFAWGPVLDLNFTVPADHWHDGWYQKDWYFTNYTTEEYIRMGSFSRDLAYMTGVTTQE 299
A+GPV+D + +P D + + G F + M GV E
Sbjct: 301 RYHIAFGPVIDGDV-IPDD-----------------PQILMEQGEFL-NYDIMLGVNQGE 341
Query: 300 AAYIV 304
V
Sbjct: 342 GLKFV 346
Score = 35.5 bits (82), Expect = 0.020
Identities = 21/108 (19%), Positives = 33/108 (30%), Gaps = 20/108 (18%)
Query: 43 AQMLSDFLYRAPVDNIVKLLVEKNVPVFI-----HGASNLFPGHMMAG-FYEVVVVTINY 96
+ +D + AP L P + H ++ P A E + Y
Sbjct: 407 LALFTDHQWVAPAVATADLHSNFGSPTYFYAFYHHCQTDQVPAWADAAHGDE-----VPY 461
Query: 97 RLGALGFLSTGDHNSPGNYGILDQAMALQWIH--GNIEHF--NGDPNS 140
LG + P N+ D ++ + N F GDPN
Sbjct: 462 VLGI--PMIGPTELFPCNFSKNDVMLSAVVMTYWTN---FAKTGDPNQ 504
>1ea5_A ACHE, acetylcholinesterase; hydrolase, serine hydrolase,
neurotransmitter cleavage, catalytic triad, alpha/beta
hydrolase; HET: NAG; 1.80A {Torpedo californica} SCOP:
c.69.1.1 PDB: 1ax9_A* 1amn_A* 1cfj_A* 1fss_A* 1gpk_A*
1gpn_A* 1oce_A* 1qid_A 1qie_A 1qif_A 1qig_A 1qih_A
1qii_A 1qij_A 1qik_A 1qim_A 1qti_A* 1vot_A* 1vxo_A*
1vxr_A* ...
Length = 537
Score = 233 bits (595), Expect = 1e-72
Identities = 77/255 (30%), Positives = 124/255 (48%), Gaps = 44/255 (17%)
Query: 65 KNVPV--FIHG--------ASNLFPGHMMAGFYEVVVVTINYRLGALGFLST-GDHNSPG 113
K+ V +I+G +++ G +A EVV+V+++YR+GA GFL+ G +PG
Sbjct: 107 KSTTVMVWIYGGGFYSGSSTLDVYNGKYLAYTEEVVLVSLSYRVGAFGFLALHGSQEAPG 166
Query: 114 NYGILDQAMALQWIHGNIEHFNGDPNSITLFGPGAGAASAGLLMVNPRTRNLVRRVIAQL 173
N G+LDQ MALQW+H NI+ F GDP ++T+FG AG AS G+ +++P +R+L RR I
Sbjct: 167 NVGLLDQRMALQWVHDNIQFFGGDPKTVTIFGESAGGASVGMHILSPGSRDLFRRAIL-- 224
Query: 174 WSIAYFQSGSATADWALIQDRWRVQNTSRLFAQHLGCSFESSWKIVDCLKRGRSSLELGN 233
QSGS WA + + ++L C+ S +++ CL R + EL +
Sbjct: 225 ------QSGSPNCPWA-SVSVAEGRRRAVELGRNLNCNLNSDEELIHCL-REKKPQELID 276
Query: 234 ANFR----PQVGMFAWGPVLDLNFTVPADHWHDGWYQKDWYFTNYTTEEYIRMGSFSRDL 289
+ + F++ PV+D F P E + G+F
Sbjct: 277 VEWNVLPFDSIFRFSFVPVIDGEF-FPTS-----------------LESMLNSGNFK-KT 317
Query: 290 AYMTGVTTQEAAYIV 304
+ GV E ++ +
Sbjct: 318 QILLGVNKDEGSFFL 332
Score = 31.2 bits (71), Expect = 0.51
Identities = 16/114 (14%), Positives = 36/114 (31%), Gaps = 25/114 (21%)
Query: 43 AQMLSDFLYRAPVDNIVKLLVEKNVPVFI-----HGASNLFPGHMMAG-FYEVVVVTINY 96
++ D P+ + V + ++ ++ ++P M YE
Sbjct: 392 DDIVGDHNVICPLMHFVNKYTKFGNGTYLYFFNHRASNLVWPEWMGVIHGYE-------- 443
Query: 97 RLGALGFLSTGDHNSPGNYGILDQAMALQWIH--GNIEHF--NGDPNSITLFGP 146
+ F+ NY ++A++ + +H F G+PN
Sbjct: 444 ----IEFVFGLPLVKELNYTAEEEALSRRIMHYWAT---FAKTGNPNEPHSQES 490
>1p0i_A Cholinesterase; serine hydrolase, butyrate, hydrolase; HET: NAG FUC
MES; 2.00A {Homo sapiens} SCOP: c.69.1.1 PDB: 1p0m_A*
1p0p_A* 1p0q_A* 1xlu_A* 1xlv_A* 1xlw_A* 2wsl_A* 2pm8_A*
3djy_A* 3dkk_A* 2wij_A* 2wif_A* 2wik_A* 2y1k_A* 2j4c_A*
2xmb_A* 2xmc_A* 2xmd_A* 2xmg_A* 2wig_A* ...
Length = 529
Score = 231 bits (592), Expect = 2e-72
Identities = 77/255 (30%), Positives = 121/255 (47%), Gaps = 44/255 (17%)
Query: 65 KNVPV--FIHG--------ASNLFPGHMMAGFYEVVVVTINYRLGALGFLS-TGDHNSPG 113
KN V +I+G + +++ G +A V+VV++NYR+GALGFL+ G+ +PG
Sbjct: 105 KNATVLIWIYGGGFQTGTSSLHVYDGKFLARVERVIVVSMNYRVGALGFLALPGNPEAPG 164
Query: 114 NYGILDQAMALQWIHGNIEHFNGDPNSITLFGPGAGAASAGLLMVNPRTRNLVRRVIAQL 173
N G+ DQ +ALQW+ NI F G+P S+TLFG AGAAS L +++P + +L R I
Sbjct: 165 NMGLFDQQLALQWVQKNIAAFGGNPKSVTLFGESAGAASVSLHLLSPGSHSLFTRAIL-- 222
Query: 174 WSIAYFQSGSATADWALIQDRWRVQNTSRLFAQHLGCSFESSWKIVDCLKRGRSSLELGN 233
QSGS A WA + + +N + A+ GCS E+ +I+ CL R + E+
Sbjct: 223 ------QSGSFNAPWA-VTSLYEARNRTLNLAKLTGCSRENETEIIKCL-RNKDPQEILL 274
Query: 234 A----NFRPQVGMFAWGPVLDLNFTVPADHWHDGWYQKDWYFTNYTTEEYIRMGSFSRDL 289
+GP +D +F + + + +G F +
Sbjct: 275 NEAFVVPYGTPLSVNFGPTVDGDF-LTDM-----------------PDILLELGQFKK-T 315
Query: 290 AYMTGVTTQEAAYIV 304
+ GV E +
Sbjct: 316 QILVGVNKDEGTAFL 330
Score = 30.8 bits (70), Expect = 0.74
Identities = 7/47 (14%), Positives = 13/47 (27%), Gaps = 5/47 (10%)
Query: 43 AQMLSDFLYRAPVDNIVKLLVEKNVPVFI-----HGASNLFPGHMMA 84
++ D+ + P K E F + +P M
Sbjct: 390 GDVVGDYNFICPALEFTKKFSEWGNNAFFYYFEHRSSKLPWPEWMGV 436
>2bce_A Cholesterol esterase; hydrolase, serine esterase, lipase; 1.60A
{Bos taurus} SCOP: c.69.1.1 PDB: 1akn_A* 1aql_A* 1f6w_A
1jmy_A
Length = 579
Score = 232 bits (594), Expect = 4e-72
Identities = 79/257 (30%), Positives = 118/257 (45%), Gaps = 54/257 (21%)
Query: 69 VFIHG--------------ASNLFPGHMMAGFYEVVVVTINYRLGALGFLSTGDHNSPGN 114
++I+G ++ L+ G +A V+VVT NYR+G LGFLSTGD N PGN
Sbjct: 102 IWIYGGAFLMGASQGANFLSNYLYDGEEIATRGNVIVVTFNYRVGPLGFLSTGDSNLPGN 161
Query: 115 YGILDQAMALQWIHGNIEHFNGDPNSITLFGPGAGAASAGLLMVNPRTRNLVRRVIAQLW 174
YG+ DQ MA+ W+ NIE F GDP+ ITLFG AG AS L ++P + L++R I+
Sbjct: 162 YGLWDQHMAIAWVKRNIEAFGGDPDQITLFGESAGGASVSLQTLSPYNKGLIKRAIS--- 218
Query: 175 SIAYFQSGSATADWALIQDRWRVQNTSRLFAQHLGCSFESSWKIVDCLKRGRSSLELGNA 234
QSG WA+ QD ++ A+ +GC + + K+ CL + L A
Sbjct: 219 -----QSGVGLCPWAIQQD---PLFWAKRIAEKVGCPVDDTSKMAGCL-KITDPRALTLA 269
Query: 235 N-------FRPQVGMFAWGPVLDLNFTVPADHWHDGWYQKDWYFTNYTTEEYIRMGSFSR 287
P++ ++ PV+D +F +P D +
Sbjct: 270 YKLPLGSTEYPKLHYLSFVPVIDGDF-IPDDP-------------------VNLYANA-A 308
Query: 288 DLAYMTGVTTQEAAYIV 304
D+ Y+ G + V
Sbjct: 309 DVDYIAGTNDMDGHLFV 325
>2ha2_A ACHE, acetylcholinesterase; hydrolase fold, serine esterase, homod
glycosylated protein, hydrolase; HET: NAG FUC SCK SCU
P6G; 2.05A {Mus musculus} SCOP: c.69.1.1 PDB: 1j07_A*
1mah_A* 1j06_A* 1n5r_A* 2gyv_A* 2gyw_A* 2h9y_A* 2ha0_A*
2gyu_A* 2ha3_A* 2wls_A* 4a23_A* 2c0q_A* 2jey_A* 2jgm_A*
2whr_A* 2c0p_A* 1ku6_A* 1q84_A* 1q83_A* ...
Length = 543
Score = 225 bits (576), Expect = 7e-70
Identities = 75/255 (29%), Positives = 123/255 (48%), Gaps = 46/255 (18%)
Query: 67 VPVFIHG--------ASNLFPGHMMAGFYEVVVVTINYRLGALGFLS-TGDHNSPGNYGI 117
V ++I+G + +++ G +A V+V++NYR+G GFL+ G +PGN G+
Sbjct: 114 VLIWIYGGGFYSGAASLDVYDGRFLAQVEGAVLVSMNYRVGTFGFLALPGSREAPGNVGL 173
Query: 118 LDQAMALQWIHGNIEHFNGDPNSITLFGPGAGAASAGLLMVNPRTRNLVRRVIAQLWSIA 177
LDQ +ALQW+ NI F GDP S+TLFG AGAAS G+ +++ +R+L R +
Sbjct: 174 LDQRLALQWVQENIAAFGGDPMSVTLFGESAGAASVGMHILSLPSRSLFHRAVL------ 227
Query: 178 YFQSGSATADWALIQDRWRVQNTSRLFAQHLGC----SFESSWKIVDCLKRGRSSLELGN 233
QSG+ WA + + L A+ +GC + + +++ CL R R + +L +
Sbjct: 228 --QSGTPNGPWA-TVSAGEARRRATLLARLVGCPPGGAGGNDTELIACL-RTRPAQDLVD 283
Query: 234 ANFR----PQVGMFAWGPVLDLNFTVPADHWHDGWYQKDWYFTNYTTEEYIRMGSFSRDL 289
+ + F++ PV+D +F + E I G F DL
Sbjct: 284 HEWHVLPQESIFRFSFVPVVDGDF-LSDT-----------------PEALINTGDFQ-DL 324
Query: 290 AYMTGVTTQEAAYIV 304
+ GV E +Y +
Sbjct: 325 QVLVGVVKDEGSYFL 339
Score = 30.8 bits (70), Expect = 0.68
Identities = 7/47 (14%), Positives = 16/47 (34%), Gaps = 5/47 (10%)
Query: 43 AQMLSDFLYRAPVDNIVKLLVEKNVPVFI-----HGASNLFPGHMMA 84
+ ++ D PV + L + V+ ++ +P M
Sbjct: 399 SAVVGDHNVVCPVAQLAGRLAAQGARVYAYIFEHRASTLTWPLWMGV 445
>2h7c_A Liver carboxylesterase 1; enzyme, cholesteryl esterase, hydrolase;
HET: NAG NDG SIA COA; 2.00A {Homo sapiens} SCOP:
c.69.1.1 PDB: 2dqy_A* 2dr0_A* 2dqz_A* 1mx1_A* 1mx5_A*
1mx9_A* 4ab1_A* 1ya4_A* 1yah_A* 1yaj_A* 1ya8_A* 2hrr_A*
2hrq_A* 3k9b_A* 1k4y_A*
Length = 542
Score = 223 bits (569), Expect = 9e-69
Identities = 77/244 (31%), Positives = 112/244 (45%), Gaps = 25/244 (10%)
Query: 67 VPVFIHG------ASNLFPGHMMAGFYEVVVVTINYRLGALGFLSTGDHNSPGNYGILDQ 120
V V+IHG A++ + G +A VVVVTI YRLG GF STGD +S GN+G LDQ
Sbjct: 117 VMVWIHGGGLMVGAASTYDGLALAAHENVVVVTIQYRLGIWGFFSTGDEHSRGNWGHLDQ 176
Query: 121 AMALQWIHGNIEHFNGDPNSITLFGPGAGAASAGLLMVNPRTRNLVRRVIAQLWSIAYFQ 180
AL+W+ NI F G+P S+T+FG AG S +L+++P +NL R I+ +
Sbjct: 177 VAALRWVQDNIASFGGNPGSVTIFGESAGGESVSVLVLSPLAKNLFHRAIS--------E 228
Query: 181 SGSATADWALIQDRWRVQNTSRLFAQHLGCSFESSWKIVDCLKRGRSSLELGNANFRPQV 240
SG A + + V+ + A GC +S +V CL R ++ EL + +
Sbjct: 229 SGVALTSVLV--KKGDVKPLAEQIAITAGCKTTTSAVMVHCL-RQKTEEELLETTLKMKF 285
Query: 241 GMFAWGPVLDLNFTVPADHWHDGWYQKDWYFTNYTTEEYIRMGSFSRDLAYMTGVTTQEA 300
DG T EE +F + YM G+ QE
Sbjct: 286 LSLDL-QGDPRESQPLLGTVIDGM------LLLKTPEELQAERNFH-TVPYMVGINKQEF 337
Query: 301 AYIV 304
+++
Sbjct: 338 GWLI 341
Score = 27.8 bits (62), Expect = 6.1
Identities = 3/28 (10%), Positives = 12/28 (42%)
Query: 43 AQMLSDFLYRAPVDNIVKLLVEKNVPVF 70
+++D ++ P + + + P +
Sbjct: 399 LDLIADVMFGVPSVIVARNHRDAGAPTY 426
>2fj0_A JuvenIle hormone esterase; manduca sexta, alpha-beta hydrolase;
HET: TFC; 2.70A {Trichoplusia NI}
Length = 551
Score = 221 bits (564), Expect = 5e-68
Identities = 59/256 (23%), Positives = 95/256 (37%), Gaps = 32/256 (12%)
Query: 69 VFIHG-------ASNLFPGHMMAGFYEVVVVTINYRLGALGFLSTGDHNSPGNYGILDQA 121
VFIHG + G +V+V+T NYRL GFLS + PGN G+ D
Sbjct: 119 VFIHGGGFAFGSGDSDLHGPEYLVSKDVIVITFNYRLNVYGFLSLNSTSVPGNAGLRDMV 178
Query: 122 MALQWIHGNIEHFNGDPNSITLFGPGAGAASAGLLMVNPRTRNLVRRVIAQLWSIAYFQS 181
L+W+ N F G P+ +TL G AGAA+ +L ++ L RR I S
Sbjct: 179 TLLKWVQRNAHFFGGRPDDVTLMGQSAGAAATHILSLSKAADGLFRRAIL--------MS 230
Query: 182 GSATADWALIQDRWRVQNTSRLFAQHLGCSFESSWKIVDCLKRGRSSLELGNAN--FRPQ 239
G++++ + + ++G + +I L + +L AN Q
Sbjct: 231 GTSSSAFFTTNPVFAQYINKLF-VTNIGITATDPEEIHQKL-IEMPAEKLNEANRFLLEQ 288
Query: 240 VGMFAWGPVLDLNFTVPADHWHDGWYQKDWYFTNYTTEEYIRMGSFSRDLAYMTGVTTQE 299
G+ + PV+ + + E+ I G + + + G T E
Sbjct: 289 FGLTTFFPVV------------ESPINGVTTILDGDPEQLIAKGRG-KHIPLIIGFTDAE 335
Query: 300 AAYIVEVTSMENCYKK 315
+ K
Sbjct: 336 CEIFRRQFEQIDIVSK 351
>1dx4_A ACHE, acetylcholinesterase; hydrolase, serine esterase, synapse,
membrane, nerve, muscle neurotransmitter degradation,
glycoprotein; HET: NAG MAN BMA 760; 2.70A {Drosophila
melanogaster} SCOP: c.69.1.1 PDB: 1qo9_A* 1qon_A*
Length = 585
Score = 213 bits (543), Expect = 1e-64
Identities = 61/279 (21%), Positives = 114/279 (40%), Gaps = 50/279 (17%)
Query: 67 VPVFIHG--------ASNLFPGHMMAGFYEVVVVTINYRLGALGFL-------STGDHNS 111
+ ++I+G +++ +MA V+V + YR+GA GFL S +
Sbjct: 143 ILIWIYGGGFMTGSATLDIYNADIMAAVGNVIVASFQYRVGAFGFLHLAPEMPSEFAEEA 202
Query: 112 PGNYGILDQAMALQWIHGNIEHFNGDPNSITLFGPGAGAASAGLLMVNPRTRNLVRRVIA 171
PGN G+ DQA+A++W+ N F G+P +TLFG AG++S +++P TR LV+R +
Sbjct: 203 PGNVGLWDQALAIRWLKDNAHAFGGNPEWMTLFGESAGSSSVNAQLMSPVTRGLVKRGMM 262
Query: 172 QLWSIAYFQSGSATADWALIQDRWRVQNTSRLFAQHLGCSFE----SSWKIVDCLKRGRS 227
QSG+ A W+ + + C+ + ++ C+ R
Sbjct: 263 --------QSGTMNAPWS-HMTSEKAVEIGKALINDCNCNASMLKTNPAHVMSCM-RSVD 312
Query: 228 SLELGNANFRP--QVGMFAWGPVLDLNFTVPADHWHDGWYQKDWYFTNYTTEEYIRMGSF 285
+ + + + F P +D F +PAD ++
Sbjct: 313 AKTISVQQWNSYSGILSFPSAPTIDGAF-LPAD-----------------PMTLMKTADL 354
Query: 286 SRDLAYMTGVTTQEAAYIVEVTSMENCYKKELSSISSDQ 324
+D + G E Y + ++ K + +++ D+
Sbjct: 355 -KDYDILMGNVRDEGTYFLLYDFIDYFDKDDATALPRDK 392
Score = 29.8 bits (67), Expect = 1.6
Identities = 7/47 (14%), Positives = 17/47 (36%), Gaps = 5/47 (10%)
Query: 43 AQMLSDFLYRAPVDNIVKLLVEKNVPVFI-----HGASNLFPGHMMA 84
+ + D + P + + L E+ V +++L+ M
Sbjct: 432 GRAVGDHFFTCPTNEYAQALAERGASVHYYYFTHRTSTSLWGEWMGV 478
>1qe3_A PNB esterase, para-nitrobenzyl esterase; alpha-beta hydrolase
directed evolution; 1.50A {Bacillus subtilis} SCOP:
c.69.1.1 PDB: 1c7j_A 1c7i_A
Length = 489
Score = 180 bits (460), Expect = 3e-53
Identities = 68/252 (26%), Positives = 107/252 (42%), Gaps = 53/252 (21%)
Query: 69 VFIHG--------ASNLFPGHMMAGFYEVVVVTINYRLGALGFL--STGDHNSPGNYGIL 118
V+IHG + L+ G +A EV+VVT+NYRLG GFL S+ D N G+L
Sbjct: 101 VWIHGGAFYLGAGSEPLYDGSKLAAQGEVIVVTLNYRLGPFGFLHLSSFDEAYSDNLGLL 160
Query: 119 DQAMALQWIHGNIEHFNGDPNSITLFGPGAGAASAGLLMVNPRTRNLVRRVIAQLWSIAY 178
DQA AL+W+ NI F GDP+++T+FG AG S L+ P + L ++ I
Sbjct: 161 DQAAALKWVRENISAFGGDPDNVTVFGESAGGMSIAALLAMPAAKGLFQKAIM------- 213
Query: 179 FQSGSATADWALIQDRWRVQNTSRLFAQHLGCSFESSWKIVDCLKRGRSSLELGNA---- 234
+SG++ + + +T+ F Q LG + +D L ++ +L A
Sbjct: 214 -ESGASRTMT-----KEQAASTAAAFLQVLGINESQ----LDRL-HTVAAEDLLKAADQL 262
Query: 235 --NFRPQVGMFAWGPVLDLNFTVPADHWHDGWYQKDWYFTNYTTEEYIRMGSFSRDLAYM 292
+ + + P LD +P + E+ I G+ + +
Sbjct: 263 RIAEKENIFQLFFQPALDPKT-LPEE-----------------PEKSIAEGAA-SGIPLL 303
Query: 293 TGVTTQEAAYIV 304
G T E
Sbjct: 304 IGTTRDEGYLFF 315
>2ogt_A Thermostable carboxylesterase EST50; alpha/beta hydrolase,
hydrolase; 1.58A {Geobacillus stearothermophilus} PDB:
2ogs_A
Length = 498
Score = 180 bits (458), Expect = 8e-53
Identities = 72/249 (28%), Positives = 97/249 (38%), Gaps = 49/249 (19%)
Query: 69 VFIHG--------ASNLFPGHMMAGFYEVVVVTINYRLGALGFLSTGD-----HNSPGNY 115
+IHG +S + G A +VVVVTINYR+ GFL GD + GN
Sbjct: 103 FWIHGGAFLFGSGSSPWYDGTAFAKHGDVVVVTINYRMNVFGFLHLGDSFGEAYAQAGNL 162
Query: 116 GILDQAMALQWIHGNIEHFNGDPNSITLFGPGAGAASAGLLMVNPRTRNLVRRVIAQLWS 175
GILDQ AL+W+ NI F GDP++IT+FG AGAAS G+L+ P L RR +
Sbjct: 163 GILDQVAALRWVKENIAAFGGDPDNITIFGESAGAASVGVLLSLPEASGLFRRAML---- 218
Query: 176 IAYFQSGSATADWALIQDRWRVQNTSRLFAQHLGCSFESSWKIVDCLKRGRSSLELGNAN 235
QSGS + + G + L + EL A
Sbjct: 219 ----QSGSGSLLLR---SPETAMAMTERILDKAGIRPGD----RERL-LSIPAEELLRAA 266
Query: 236 FRPQVGMFAWGPVLDLNFTVPADHWHDGWYQKDWYFTNYTTEEYIRMGSFSRDLAYMTGV 295
G +GPV+D + E +R G+ + + GV
Sbjct: 267 LSLGPG-VMYGPVVDGRV-LRRH-----------------PIEALRYGAA-SGIPILIGV 306
Query: 296 TTQEAAYIV 304
T E
Sbjct: 307 TKDEYNLFT 315
>1thg_A Lipase; hydrolase(carboxylic esterase); HET: NAG NDG; 1.80A
{Galactomyces geotrichum} SCOP: c.69.1.17
Length = 544
Score = 175 bits (445), Expect = 1e-50
Identities = 67/266 (25%), Positives = 99/266 (37%), Gaps = 58/266 (21%)
Query: 67 VPVFIHG------ASNLFPGHMMAGFYE-----VVVVTINYRLGALGFLSTGDHNSPG-- 113
V V+I+G +S +PG+ VV V+INYR G GFL + G
Sbjct: 124 VMVWIYGGAFVYGSSAAYPGNSYVKESINMGQPVVFVSINYRTGPFGFLGGDAITAEGNT 183
Query: 114 NYGILDQAMALQWIHGNIEHFNGDPNSITLFGPGAGAASAGLLMV------NPRTRNLVR 167
N G+ DQ L+W+ NI +F GDP+ + +FG AGA S ++ + L
Sbjct: 184 NAGLHDQRKGLEWVSDNIANFGGDPDKVMIFGESAGAMSVAHQLIAYGGDNTYNGKKLFH 243
Query: 168 RVIAQLWSIAYFQSGSATADWALIQDRWRVQNTSRLFAQHLGCSFESSWK-IVDCLKRGR 226
I QSG + FAQ+ GC +S ++CL R +
Sbjct: 244 SAIL--------QSGGPLPYHDSSSVGP--DISYNRFAQYAGCDTSASANDTLECL-RSK 292
Query: 227 SSLELGNAN--------FRPQVGMFAWGPVLDLNFTVPADHWHDGWYQKDWYFTNYTTEE 278
SS L +A F +GP D N +P E
Sbjct: 293 SSSVLHDAQNSYDLKDLFGLLPQFLGFGPRPDGNI-IPDA-----------------AYE 334
Query: 279 YIRMGSFSRDLAYMTGVTTQEAAYIV 304
R G +++ + Y++G E
Sbjct: 335 LFRSGRYAK-VPYISGNQEDEGTAFA 359
>1ukc_A ESTA, esterase; fungi, A/B hydrolase fold, acetylcholinesterase, H;
HET: NAG MAN; 2.10A {Aspergillus niger} SCOP: c.69.1.17
Length = 522
Score = 170 bits (432), Expect = 6e-49
Identities = 61/258 (23%), Positives = 96/258 (37%), Gaps = 54/258 (20%)
Query: 67 VPVFIHG------ASNLFPGHMM--AGFYEVVVVTINYRLGALGFLSTGDHNSPG--NYG 116
V +FI G ++ + G + A +V VT NYR+GALGFL++ G N G
Sbjct: 104 VWLFIQGGGYAENSNANYNGTQVIQASDDVIVFVTFNYRVGALGFLASEKVRQNGDLNAG 163
Query: 117 ILDQAMALQWIHGNIEHFNGDPNSITLFGPGAGAASAGLLMVNP--RTRNLVRRVIAQLW 174
+LDQ AL+W+ IE F GDP+ I + G AGA S + + L I
Sbjct: 164 LLDQRKALRWVKQYIEQFGGDPDHIVIHGVSAGAGSVAYHLSAYGGKDEGLFIGAIV--- 220
Query: 175 SIAYFQSGSATADWALIQDRWRVQNTSRLFAQHLGCSFESSWKIVDCLKRGRSSLELGNA 234
+S + ++ F GCS S+ ++CL R + +
Sbjct: 221 -----ESSFWPTQRTV----SEMEFQFERFVNDTGCS--SARDSLECL-REQDIATIQKG 268
Query: 235 N--------FRPQVGMFAWGPVLDLNFTVPADHWHDGWYQKDWYFTNYTTEEYIRMGSFS 286
N + + + PV D + VP + G+F
Sbjct: 269 NTGSPFPGGSSSPLPDWYFLPVTDGSL-VPDE-----------------LYNAFDAGNFI 310
Query: 287 RDLAYMTGVTTQEAAYIV 304
+ + + G T E +
Sbjct: 311 K-VPVLVGDDTDEGSNFA 327
>1llf_A Lipase 3; candida cylindracea cholesterol esterase, sterol ester
acylh hydrolase; HET: NAG F23; 1.40A {Candida
cylindracea} SCOP: c.69.1.17 PDB: 1cle_A* 1lpm_A*
1lpn_A* 1lpo_A* 1lpp_A* 1lps_A* 1crl_A* 1trh_A* 3rar_A*
1gz7_A*
Length = 534
Score = 166 bits (421), Expect = 2e-47
Identities = 58/263 (22%), Positives = 93/263 (35%), Gaps = 57/263 (21%)
Query: 67 VPVFIHG------ASNLFPGHMMAGFYE-----VVVVTINYRLGALGFLSTGDH--NSPG 113
V ++I G + +FP M ++ V +NYR+ + GFL+ D G
Sbjct: 116 VMLWIFGGGFEIGSPTIFPPAQMVTKSVLMGKPIIHVAVNYRVASWGFLAGDDIKAEGSG 175
Query: 114 NYGILDQAMALQWIHGNIEHFNGDPNSITLFGPGAGAASAGLLMVN------PRTRNLVR 167
N G+ DQ + +QW+ NI F GDP+ +T+FG AG+ S ++ + + L R
Sbjct: 176 NAGLKDQRLGMQWVADNIAGFGGDPSKVTIFGESAGSMSVLCHLIWNDGDNTYKGKPLFR 235
Query: 168 RVIAQLWSIAYFQSGSATADWALIQDRWRVQNTSRLFAQHLGCSFESSWKIVDCLKRGRS 227
I QSG+ + LF GC S + CL R S
Sbjct: 236 AGIM--------QSGAMVPSDPVDGTYG--NEIYDLFVSSAGCGSASD--KLACL-RSAS 282
Query: 228 SLELGNAN------FRPQVGMFAWGPVLDLNFTVPADHWHDGWYQKDWYFTNYTTEEYIR 281
S L +A ++ P D + D + +R
Sbjct: 283 SDTLLDATNNTPGFLAYSSLRLSYLPRPDGKN-ITDD-----------------MYKLVR 324
Query: 282 MGSFSRDLAYMTGVTTQEAAYIV 304
G ++ + + G E
Sbjct: 325 DGKYAS-VPVIIGDQNDEGTIFG 346
>1vkh_A Putative serine hydrolase; structural genomics, joint center
structural genomics, JCSG, protein structure initiative,
PS hydrolase; HET: MSE; 1.85A {Saccharomyces cerevisiae}
SCOP: c.69.1.32
Length = 273
Score = 45.8 bits (108), Expect = 7e-06
Identities = 22/157 (14%), Positives = 43/157 (27%), Gaps = 28/157 (17%)
Query: 69 VFIHG-----------ASNLFPGHMMAGFYE--VVVVTINYRLGALGFLSTGDHNSPGNY 115
++IHG N + + E V +I YRL + + +P
Sbjct: 45 IYIHGGAWNDPENTPNDFNQLANTIKSMDTESTVCQYSIEYRL-------SPEITNPR-- 95
Query: 116 GILDQAMALQWIHGNIEHFNGDPNSITLFGPGAGAASAGLLMVNPRTRNLVRRVIAQLWS 175
+ D + + +I + G GA ++ + + AQL
Sbjct: 96 NLYDAVSNITRLVKE-----KGLTNINMVGHSVGATFIWQILAALKDPQE-KMSEAQLQM 149
Query: 176 IAYFQSGSATADWALIQDRWRVQNTSRLFAQHLGCSF 212
+ Q I + + +F
Sbjct: 150 LGLLQIVKRVFLLDGIYSLKELLIEYPEYDCFTRLAF 186
>4e15_A Kynurenine formamidase; alpha/beta hydrolase fold,
hydrolase-hydrolase inhibitor COM; HET: SEB; 1.50A
{Drosophila melanogaster} PDB: 4e14_A* 4e11_A
Length = 303
Score = 44.2 bits (104), Expect = 3e-05
Identities = 20/115 (17%), Positives = 33/115 (28%), Gaps = 23/115 (20%)
Query: 69 VFIHG-----ASNLFPGHMMAGFYE--VVVVTINYRLGALGFLSTGDHNSPGNYGILDQA 121
VF+HG ++ V ++Y L +
Sbjct: 86 VFVHGGYWQEMDMSMSCSIVGPLVRRGYRVAVMDYNL-------CPQVTLEQ--LMTQFT 136
Query: 122 MALQWIHGNIEHFNGDPNSITLFGPGAGAASAGLLMVNPR-----TRNLVRRVIA 171
L WI E +S+T G AGA +++ P +V +I
Sbjct: 137 HFLNWIFDYTE--MTKVSSLTFAGHXAGAHLLAQILMRPNVITAQRSKMVWALIF 189
>3bxp_A Putative lipase/esterase; putative carboxylesterase, structural
genomics, joint center structural genomics, JCSG; HET:
EPE; 1.70A {Lactobacillus plantarum WCFS1} PDB: 3d3n_A*
Length = 277
Score = 43.7 bits (103), Expect = 3e-05
Identities = 14/77 (18%), Positives = 21/77 (27%), Gaps = 7/77 (9%)
Query: 89 VVVVTINYRLGALGFLSTGDHNSPGNYGILDQAMALQWIHGNIEHFNGDPNSITLFGPGA 148
+ V +NY+L S + + + WI + D I L G A
Sbjct: 66 MHTVVLNYQL-------IVGDQSVYPWALQQLGATIDWITTQASAHHVDCQRIILAGFSA 118
Query: 149 GAASAGLLMVNPRTRNL 165
G L
Sbjct: 119 GGHVVATYNGVATQPEL 135
>3bjr_A Putative carboxylesterase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; 2.09A {Lactobacillus plantarum WCFS1}
Length = 283
Score = 42.9 bits (101), Expect = 7e-05
Identities = 16/77 (20%), Positives = 23/77 (29%), Gaps = 7/77 (9%)
Query: 89 VVVVTINYRLGALGFLSTGDHNSPGNYGILDQAMALQWIHGNIEHFNGDPNSITLFGPGA 148
+ Y L D G +LD A+ + + ++ DP IT G
Sbjct: 81 YQAFYLEYTLL-------TDQQPLGLAPVLDLGRAVNLLRQHAAEWHIDPQQITPAGFSV 133
Query: 149 GAASAGLLMVNPRTRNL 165
G L TR
Sbjct: 134 GGHIVALYNDYWATRVA 150
>3hxk_A Sugar hydrolase; alpha-beta protein., structural genomics, PSI-2,
protein structure initiative; 3.20A {Lactococcus lactis
subsp}
Length = 276
Score = 39.8 bits (93), Expect = 6e-04
Identities = 13/72 (18%), Positives = 27/72 (37%), Gaps = 5/72 (6%)
Query: 89 VVVVTINYRLGALGFLSTGDHNSPGNYGILDQAMALQWIHGNIEHFNGDPNSITLFGPGA 148
V+ +NY + + G + + + + + IH N + + +P + L G A
Sbjct: 74 YQVLLLNYTVM-----NKGTNYNFLSQNLEEVQAVFSLIHQNHKEWQINPEQVFLLGCSA 128
Query: 149 GAASAGLLMVNP 160
G A +
Sbjct: 129 GGHLAAWYGNSE 140
>1jkm_A Brefeldin A esterase; serine hydrolase, degradation of brefeldin A,
alpha/beta hydrolase family; 1.85A {Bacillus subtilis}
SCOP: c.69.1.2
Length = 361
Score = 39.4 bits (92), Expect = 0.001
Identities = 23/118 (19%), Positives = 40/118 (33%), Gaps = 24/118 (20%)
Query: 69 VFIHGA-----SNLFPGH-----MMAGFYEVVVVTINYRLGALGFLSTGDHNSPGNYGIL 118
V+ HG + H +A VVV +++R + G H P G+
Sbjct: 113 VYTHGGGMTILTTDNRVHRRWCTDLAAA-GSVVVMVDFRNAWT---AEGHHPFPS--GVE 166
Query: 119 DQAMALQWIHGNIEHFNGDPNSITLFGPGAG---AASAGLLMVNPRTRNLVRRVIAQL 173
D A+ W+ + E + + G G A + LL + R + +
Sbjct: 167 DCLAAVLWVDEHRESLGLSG--VVVQGESGGGNLAIATTLLA---KRRGRLDAIDGVY 219
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.5 bits (86), Expect = 0.006
Identities = 51/357 (14%), Positives = 91/357 (25%), Gaps = 108/357 (30%)
Query: 31 VRDEHNCGSISTAQMLSDFLYRAPVDNIVKLLVEKNVP--------------------VF 70
++ E S+ T + R + N ++ + NV V
Sbjct: 98 IKTEQRQPSMMTRMYIE---QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL 154
Query: 71 IHGASNLFPGHMMAGFYEVVVVTINYR----LGALGF----LSTGDHNSPGNYGILDQAM 122
I G + G + V + F L+ + NSP +L+
Sbjct: 155 IDG---------VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPE--TVLEMLQ 203
Query: 123 ALQW-IHGNIEHFNGDPNSITLFGPGAGAASAGLLMVNPRTRNLVRRVIAQLWS---IAY 178
L + I N + ++I L A LL P L+ V+ + +
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL--VLLNVQNAKAWNA 261
Query: 179 FQSGS----ATADWALIQDRWRVQNTSR-----------------LFAQHLGCSFESSWK 217
F T + D T+ L ++L C
Sbjct: 262 FNLSCKILLTTRFKQVT-DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR------ 314
Query: 218 IVDCLKRGRSSLELGNANFRPQ-VGMFAWGPVLDLNFTVPADHWHDGW--YQKDWY---- 270
L R + N P+ + + A + W D W D
Sbjct: 315 -PQDLPR---EVLTTN----PRRLSIIA------ESIRDGLATW-DNWKHVNCDKLTTII 359
Query: 271 ---FTNYTTEE----YIRMGSFSRDLAYMTGVTT---QEAAYIVEVTSMENCYKKEL 317
E + R+ F T + + + + + +K L
Sbjct: 360 ESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL 416
Score = 34.4 bits (78), Expect = 0.056
Identities = 60/370 (16%), Positives = 97/370 (26%), Gaps = 118/370 (31%)
Query: 36 NCGSI-STAQMLSDFLYRAPVDNIVKLLVEKNVPVFIHGASNLFPGHMMAGFYE---VVV 91
NC S + +ML LY+ + + N+ + IH + + YE +V+
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL 250
Query: 92 --VTINYRLGALGF-----LSTGDHNSPGNYGILDQAMALQWIHGNIEHFNG---DPNSI 141
V A L+T + D A H +++H +
Sbjct: 251 LNVQNAKAWNAFNLSCKILLTTRFKQ------VTDFLSAATTTHISLDHHSMTLTPDEVK 304
Query: 142 TLFGPGAGAASAGL----LMVNPRTRNLVRRVIAQLWSIAYFQSGSATADWALIQDRWRV 197
+L L L NPR ++ + + G AT W D W+
Sbjct: 305 SLLLKYLDCRPQDLPREVLTTNPR-------RLSIIA--ESIRDGLAT--W----DNWKH 349
Query: 198 QNTSRL------FAQHL----------GCS-FESS-----------W---------KIVD 220
N +L L S F S W +V+
Sbjct: 350 VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVN 409
Query: 221 CLKRGRSSLELGNANFRPQVGMFAWGPVLDLNFTVPAD-----H-----------WHDGW 264
L + S +E + P + L V + H D
Sbjct: 410 KLHK-YSLVEKQPKESTISI------PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSD 462
Query: 265 Y----QKDWYFTNY------TTEEYIRMGSFSR---DLAYM------TGVTTQEAAYIVE 305
D YF ++ E RM F D ++ + I+
Sbjct: 463 DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILN 522
Query: 306 VTSMENCYKK 315
YK
Sbjct: 523 TLQQLKFYKP 532
Score = 29.4 bits (65), Expect = 2.1
Identities = 22/158 (13%), Positives = 48/158 (30%), Gaps = 50/158 (31%)
Query: 131 IEHFNGDPNSIT----LFGPGAGAASAGLLMVNPRTRNLVRRVIAQ--------LWS-IA 177
I+H ++++ LF L+ +V++ + + L S I
Sbjct: 51 IDHIIMSKDAVSGTLRLFW---------TLLSKQE--EMVQKFVEEVLRINYKFLMSPIK 99
Query: 178 YFQSGSATADWALIQDRWRVQNTSRLFAQHLGCSFESSWKIVDCLKR------------- 224
Q + I+ R R+ N +++FA++ + K+ L
Sbjct: 100 TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL 159
Query: 225 --GRSSLELGNANFRPQVGMFAWGPVLDLNFTVPADHW 260
G++ + L +F + W
Sbjct: 160 GSGKTWVALDVCLSYKVQCKM--------DFKI---FW 186
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 35.7 bits (81), Expect = 0.007
Identities = 8/34 (23%), Positives = 15/34 (44%), Gaps = 9/34 (26%)
Query: 222 LKRGRSSLELGNANFRPQVGMFAWGPVLDLNFTV 255
LK+ ++SL+L + P L + T+
Sbjct: 22 LKKLQASLKL----YADDS-----APALAIKATM 46
Score = 29.5 bits (65), Expect = 0.95
Identities = 5/21 (23%), Positives = 8/21 (38%), Gaps = 4/21 (19%)
Query: 139 NSITLFGPGAGAASAGLLMVN 159
S+ L+ SA L +
Sbjct: 27 ASLKLYADD----SAPALAIK 43
>3h04_A Uncharacterized protein; protein with unknown function, structural
genomics, MCSG, PS protein structure initiative; 1.90A
{Staphylococcus aureus subsp}
Length = 275
Score = 36.0 bits (83), Expect = 0.010
Identities = 17/108 (15%), Positives = 34/108 (31%), Gaps = 27/108 (25%)
Query: 69 VFIHG------ASNLFPGHMM----AGFYEVVVVTINYRLGALGFLSTGDHNSPGNYGIL 118
V+IHG +N + + ++ ++YRL + + I
Sbjct: 33 VYIHGGGLMFGKANDLSPQYIDILTEHY---DLIQLSYRLL-------PEVSLDC--IIE 80
Query: 119 DQAMALQWIHGNIEHFNGDPNSITLFGPGAGAASAGLLMVNPRTRNLV 166
D + I I FG +GA + L+ + ++
Sbjct: 81 DVYASFDAIQSQY-----SNCPIFTFGRSSGAYLSLLIARDRDIDGVI 123
>1lzl_A Heroin esterase; alpha/beta hydrolase; 1.30A {Rhodococcus SP} SCOP:
c.69.1.2 PDB: 1lzk_A
Length = 323
Score = 36.1 bits (84), Expect = 0.013
Identities = 27/124 (21%), Positives = 38/124 (30%), Gaps = 40/124 (32%)
Query: 69 VFIHG----ASNLFPGH----MMAGFYEVVVVTINYRL-------GALGFLSTGDHNSPG 113
++IHG +A V + YRL G
Sbjct: 83 LWIHGGGFAIGTAESSDPFCVEVARELGFAVANVEYRLAPETTFPGP------------- 129
Query: 114 NYGILDQAM-ALQWIHGNIEHFNGDPNSITLFGPGAG---AASAGLLMVNPRTRNLVRRV 169
++ AL +IH + E DP+ I + G AG AA L R +V V
Sbjct: 130 ----VNDCYAALLYIHAHAEELGIDPSRIAVGGQSAGGGLAAGTVLKA---RDEGVV-PV 181
Query: 170 IAQL 173
Q
Sbjct: 182 AFQF 185
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.6 bits (79), Expect = 0.053
Identities = 33/134 (24%), Positives = 46/134 (34%), Gaps = 41/134 (30%)
Query: 47 SDFLYRAPVDNIVKLLVEKNVPVFIHGASNLFPGHMMAGFYEVVVVTINYRLGALGFLST 106
S L A D I K LV+ NV + P V T + G+ L
Sbjct: 429 SHLLVPA-SDLINKDLVKNNVS--FNAKDIQIP----------VYDTFD---GSD--LRV 470
Query: 107 GDHNSPGNYGILDQA--MALQW---IHGNIEHFNGDPNSITLFGPGAGAASAGLLMVNPR 161
+ I+D + ++W H I FGPG GA+ G+L
Sbjct: 471 LSGSISER--IVDCIIRLPVKWETTTQFKATH-------ILDFGPG-GASGLGVLT---- 516
Query: 162 TRNL----VRRVIA 171
RN VR ++A
Sbjct: 517 HRNKDGTGVRVIVA 530
>3ga7_A Acetyl esterase; phosphoserine, IDP00896, hydrolase, serine
structural genomics, center for structural genomics of
INFE diseases, csgid; HET: SEP MSE; 1.55A {Salmonella
typhimurium}
Length = 326
Score = 33.8 bits (78), Expect = 0.054
Identities = 12/96 (12%), Positives = 32/96 (33%), Gaps = 31/96 (32%)
Query: 89 VVVVTINYRL-------GALGFLSTGDHNSPGNYGILDQAM-ALQWIHGNIEHFNGDPNS 140
V+ I+Y L A+ ++ + + + + ++ +
Sbjct: 119 CTVIGIDYSLSPQARYPQAI-----------------EETVAVCSYFSQHADEYSLNVEK 161
Query: 141 ITLFGPGAG---AASAGLLMVNPRTRNLVRRVIAQL 173
I G AG A ++ L + R +++ + +
Sbjct: 162 IGFAGDSAGAMLALASALWL---RDKHIRCGNVIAI 194
>3qh4_A Esterase LIPW; structural genomics, ssgcid, seattle structural
genomics CEN infectious disease, tuberculosis, O LIPW,
heroin esterase; 1.75A {Mycobacterium marinum}
Length = 317
Score = 33.8 bits (78), Expect = 0.065
Identities = 23/96 (23%), Positives = 31/96 (32%), Gaps = 32/96 (33%)
Query: 89 VVVVTINYRL-------GALGFLSTGDHNSPGNYGILDQAM-ALQWIHGNIEHFNGDPNS 140
VV+++YRL A L A+ L W+ GN D
Sbjct: 117 CAVVSVDYRLAPEHPYPAA-----------------LHDAIEVLTWVVGNATRLGFDARR 159
Query: 141 ITLFGPGAG---AASAGLLMVNPRTRNLVRRVIAQL 173
+ + G AG AA +L VI QL
Sbjct: 160 LAVAGSSAGATLAAGLAHGA---ADGSLP-PVIFQL 191
>1jji_A Carboxylesterase; alpha-beta hydrolase fold, hydrolase; HET: EPE;
2.20A {Archaeoglobus fulgidus} SCOP: c.69.1.2
Length = 311
Score = 33.0 bits (76), Expect = 0.099
Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 15/65 (23%)
Query: 89 VVVVTINYRLGALGFLSTGDHNSPGN-Y-GILDQAM-ALQWIHGNIEHFNGDPNSITLFG 145
VV+++YRL +P + + + A +W+ N E DP+ I + G
Sbjct: 111 STVVSVDYRL------------APEHKFPAAVYDCYDATKWVAENAEELRIDPSKIFVGG 158
Query: 146 PGAGA 150
AG
Sbjct: 159 DSAGG 163
>2c7b_A Carboxylesterase, ESTE1; carboxyesterase, thermophilic enzyme,
hydrolase, HSL, alpha/beta hydrolase fold; 2.3A
{Uncultured archaeon}
Length = 311
Score = 32.6 bits (75), Expect = 0.13
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 18/74 (24%)
Query: 89 VVVVTINYRLGALGFLSTGDHNSPGN-Y-GILDQAM-ALQWIHGNIEHFNGDPNSITLFG 145
VVV+++YRL +P + ++ A AL+W+ + DP+ I + G
Sbjct: 105 SVVVSVDYRL------------APEYKFPTAVEDAYAALKWVADRADELGVDPDRIAVAG 152
Query: 146 PGAG---AASAGLL 156
AG AA +L
Sbjct: 153 DSAGGNLAAVVSIL 166
>2wir_A Pesta, alpha/beta hydrolase fold-3 domain protein; tertiary
alcohol; 2.00A {Pyrobaculum calidifontis} PDB: 2yh2_A
3zwq_A
Length = 313
Score = 32.7 bits (75), Expect = 0.13
Identities = 21/95 (22%), Positives = 34/95 (35%), Gaps = 23/95 (24%)
Query: 67 VPVFIHGA---SNLFPGH-----MMAGFYEVVVVTINYRLGALGFLSTGDHNSPGN-Y-- 115
V+ HG H +A VVV+++YRL +P + +
Sbjct: 78 AVVYYHGGGFVLGSVETHDHVCRRLANLSGAVVVSVDYRL------------APEHKFPA 125
Query: 116 GILDQAMALQWIHGNIEHFNGDPNSITLFGPGAGA 150
+ D A +W+ N + D I + G AG
Sbjct: 126 AVEDAYDAAKWVADNYDKLGVDNGKIAVAGDSAGG 160
>2qru_A Uncharacterized protein; alpha/beta-hydrolase, structural GENO
PSI-2, protein structure initiative, midwest center for
STR genomics, MCSG; 1.65A {Enterococcus faecalis}
Length = 274
Score = 32.1 bits (73), Expect = 0.17
Identities = 15/86 (17%), Positives = 23/86 (26%), Gaps = 17/86 (19%)
Query: 89 VVVVTINYRLGALGFLSTGDHNSPGNYGILDQAM-ALQWIHGNIEHFNGDPNSITLFGPG 147
V+ ++Y L + IL Q ++ S L G
Sbjct: 59 YTVLALDYLLA-------PNTKID---HILRTLTETFQLLNEE----IIQNQSFGLCGRS 104
Query: 148 AGAASAGLLMVNPRTRNLVRRVIAQL 173
AG L +T NL +
Sbjct: 105 AGGYLMLQLTKQLQTLNL--TPQFLV 128
>2hm7_A Carboxylesterase; alpha/beta hydrolase fold, hydrolase; 2.00A
{Alicyclobacillus acidocaldarius} PDB: 1evq_A* 1u4n_A
1qz3_A
Length = 310
Score = 32.2 bits (74), Expect = 0.19
Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 22/91 (24%)
Query: 89 VVVVTINYRLGALGFLSTGDHNSPGN-Y-GILDQAM-ALQWIHGNIEHFNGDPNSITLFG 145
VV +++YRL +P + + ++ A ALQWI F+ DP I + G
Sbjct: 106 AVVFSVDYRL------------APEHKFPAAVEDAYDALQWIAERAADFHLDPARIAVGG 153
Query: 146 PGAG---AASAGLLMVNPRTRNLVRRVIAQL 173
AG AA +L + R + QL
Sbjct: 154 DSAGGNLAAVTSILA---KERGGP-ALAFQL 180
>3pbh_A Procathepsin B; thiol protease, cysteine protease, proenzyme,
papain; 2.50A {Homo sapiens} SCOP: d.3.1.1 PDB: 2pbh_A
1pbh_A 1mir_A
Length = 317
Score = 28.5 bits (64), Expect = 2.7
Identities = 7/22 (31%), Positives = 12/22 (54%), Gaps = 3/22 (13%)
Query: 30 HVRDEHNCGS---ISTAQMLSD 48
+RD+ +CGS + +SD
Sbjct: 82 EIRDQGSCGSCWAFGAVEAISD 103
>4f9d_A Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylas; family 4
carbohydrate esterase, TIM barrel, hydrolase, deace
carbohydrate/sugar binding; HET: MES; 1.90A {Escherichia
coli} PDB: 4f9j_A*
Length = 618
Score = 28.4 bits (63), Expect = 4.0
Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 2/52 (3%)
Query: 237 RPQVGMFAWGPVLDLNFTVPADHWHDGWYQKDWYFTNYTTEEYIRMGSFSRD 288
R V ++AW PV L++ + + E+Y R+ F
Sbjct: 355 RSGVNIYAWMPV--LSWDLDPTLTRVKYLPTGEKKAQIHPEQYHRLSPFDDR 404
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD;
2.72A {Stenotrophomonas maltophilia}
Length = 357
Score = 27.7 bits (62), Expect = 5.0
Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 7/52 (13%)
Query: 126 WIHGNIEHFNGDPNSITLF----GPGAGAASAGLLMVNPRTRNLVRRVIAQL 173
+ G+ P+ ++ G G ASA L+ V R VR+V A
Sbjct: 303 EVDGSGLRALAVPS---VWLLGYGDWNGMASATLIGVTRYAREAVRQVTAYC 351
>3ain_A 303AA long hypothetical esterase; carboxylesterase, thermophilic,
dimer, archaea, R267G, hydro; 1.65A {Sulfolobus
tokodaii} PDB: 3aio_A 3ail_A 3aik_A 3aim_A
Length = 323
Score = 27.6 bits (62), Expect = 5.2
Identities = 23/107 (21%), Positives = 40/107 (37%), Gaps = 37/107 (34%)
Query: 69 VFIHGASNLFPGHMMAGFY-------------EVVVVTINYRLGALGFLSTGDHNSPGN- 114
V+ HG G ++ + V ++++YRL +P N
Sbjct: 94 VYYHGG-----GFVLGDIESYDPLCRAITNSCQCVTISVDYRL------------APENK 136
Query: 115 Y-GILDQAM-ALQWIHGNIEHFNGDPNSITLFGPGAG---AASAGLL 156
+ + + AL+W++ N E F I + G AG AA +L
Sbjct: 137 FPAAVVDSFDALKWVYNNSEKF-NGKYGIAVGGDSAGGNLAAVTAIL 182
>3hhi_A Cathepsin B-like cysteine protease; occluding loop, hydrolase, THIO
protease; HET: 074; 1.60A {Trypanosoma brucei} PDB:
3mor_A*
Length = 325
Score = 27.7 bits (62), Expect = 5.9
Identities = 7/22 (31%), Positives = 12/22 (54%), Gaps = 3/22 (13%)
Query: 30 HVRDEHNCGS---ISTAQMLSD 48
+ D+ CGS ++ A +SD
Sbjct: 90 QIADQSACGSCWAVAAASAMSD 111
>3qsd_A Cathepsin B-like peptidase (C01 family); cysteine peptidase,
digestive tract, hydrolase-hydrolase INH complex; HET:
074; 1.30A {Schistosoma mansoni} PDB: 3s3q_A* 3s3r_A*
Length = 254
Score = 27.2 bits (61), Expect = 6.5
Identities = 7/22 (31%), Positives = 11/22 (50%), Gaps = 3/22 (13%)
Query: 30 HVRDEHNCGS---ISTAQMLSD 48
+RD+ CGS + +SD
Sbjct: 21 TIRDQSRCGSCWAFGAVEAMSD 42
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 27.5 bits (61), Expect = 8.7
Identities = 16/64 (25%), Positives = 22/64 (34%), Gaps = 26/64 (40%)
Query: 89 VVVVTINYRLGALGFLSTGDHNSPGN---------YGILDQA----MALQWIHGNIEHFN 135
V+VVT GF + G+ +G MA WI G I + N
Sbjct: 819 VIVVT--------GF---AEVGPWGSARTRWEMEAFGEFSLEGCVEMA--WIMGFISYHN 865
Query: 136 GDPN 139
G+
Sbjct: 866 GNLK 869
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 27.2 bits (60), Expect = 9.1
Identities = 12/70 (17%), Positives = 25/70 (35%), Gaps = 2/70 (2%)
Query: 12 RSCGQHSQTSGREERSCIHVRDEHNCGSISTAQMLSDFLYRAPVDNIV-KLLVEKNVPVF 70
S G + + I + Q L + D ++ KL+ + ++P+
Sbjct: 794 VSAGGIKRKCQPPQLPPITDAESKTKADQIYCQYEIGVLLNSINDTMIPKLVAD-DIPLI 852
Query: 71 IHGASNLFPG 80
++FPG
Sbjct: 853 QSLLLDVFPG 862
>3cbj_A Cathepsin B; cathepsin B, occluding loop, chagas disease, glyco
hydrolase, lysosome, protease, thiol protease, zymogen,
CYT vesicle; 1.80A {Homo sapiens} PDB: 3cbk_A 1gmy_A*
3ai8_B* 3k9m_A 1the_A* 1cpj_A* 1cte_A 2dcc_A* 2dc6_A*
1ito_A* 2dc8_A* 2dc9_A* 2dca_A* 2dcb_A* 2dc7_A* 2dcd_A*
1qdq_A* 1csb_B* 1huc_B 2ipp_B ...
Length = 266
Score = 26.9 bits (60), Expect = 9.9
Identities = 7/22 (31%), Positives = 12/22 (54%), Gaps = 3/22 (13%)
Query: 30 HVRDEHNCGS---ISTAQMLSD 48
+RD+ +CGS + +SD
Sbjct: 25 EIRDQGSCGSAWAFGAVEAISD 46
>2o7r_A CXE carboxylesterase; alpha/beta hydrolase; 1.40A {Actinidia
eriantha} PDB: 2o7v_A
Length = 338
Score = 27.0 bits (60), Expect = 9.9
Identities = 33/122 (27%), Positives = 49/122 (40%), Gaps = 27/122 (22%)
Query: 69 VFIHG--------ASNLFPGH--MMAGFYEVVVVTINYRLGALGFLSTGDHNSPGNYGIL 118
V+ HG AS +F MA VV+ +++YRL +H P Y
Sbjct: 87 VYFHGGGFILFSAASTIFHDFCCEMAVHAGVVIASVDYRLAP-------EHRLPAAY--- 136
Query: 119 DQAM-ALQWIHGNIEHF---NGDPNSITLFGPGAG---AASAGLLMVNPRTRNLVRRVIA 171
D AM ALQWI + + + D ++ + G AG A AGL L ++
Sbjct: 137 DDAMEALQWIKDSRDEWLTNFADFSNCFIMGESAGGNIAYHAGLRAAAVADELLPLKIKG 196
Query: 172 QL 173
+
Sbjct: 197 LV 198
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI
II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase,
tetramer; 2.30A {Corynebacterium glutamicum}
Length = 344
Score = 26.9 bits (60), Expect = 9.9
Identities = 19/90 (21%), Positives = 31/90 (34%), Gaps = 4/90 (4%)
Query: 67 VPVFIHGASNLFPGHMMAGFYEVVVVTINYRLGALGFLSTGDHNSPGNYGILDQAMALQW 126
V V GA+ Y+ V+VT+ G L + H S G Y DQ +
Sbjct: 190 VEVTATGANVFSQEIAEFNDYDQVIVTLRGSKGELINIVNSRHCSYG-Y---DQRLEAFG 245
Query: 127 IHGNIEHFNGDPNSITLFGPGAGAASAGLL 156
G + N P ++ + + +
Sbjct: 246 SKGMLAADNIRPTTVRKHNAESTEQADPIF 275
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.135 0.430
Gapped
Lambda K H
0.267 0.0565 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,199,321
Number of extensions: 313298
Number of successful extensions: 731
Number of sequences better than 10.0: 1
Number of HSP's gapped: 681
Number of HSP's successfully gapped: 56
Length of query: 326
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 232
Effective length of database: 4,077,219
Effective search space: 945914808
Effective search space used: 945914808
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.1 bits)